Psyllid ID: psy14560

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFLQEGTM
Secondary Structure (PSIPRED)
cccccccccccccccccccEEcccccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHccHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEEcccccccccccccHHcHcHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHccccccEEcccccccEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHcccccccccccccccccEEccccccEEEEcccccccccEccccccHHHHHHHHHHcccccEEEEEEcccEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccEccEEEccccHHHHHHHcccc
Coil and Loop (DISEMBL)
mqqcmivinpspknfyggngivgaqvplgtGIAFAAqykgtggvcfalygdgasnqgqnfeayniaklwgipciyvcenngygmgtsaerssastdyytrgdyipgiwvdgMDVLAVREASKFAVNyassgkgplVLEVVTYrysghsmsdpgtsfrdpiTSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSeltgrrtgcakgkgpisweccakgkggsmhMYAKNFYGGNGIVGAQTLKSLLKSIsgrsyaseatfetkpfklhklsegpsnkvtvTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYsgqvssflqegtm
Flexible Loop (DISEMBL)
MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVnyassgkgplVLEVVTYRYSghsmsdpgtsfRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRrtgcakgkgpiswECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKpfklhklsegpsnkvtvtkQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYsgqvssflqegtm
Low Complexity Region (SEG)
MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFLQEGTM
Disordered region (IsUnstruct)
***CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGT*******STDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG************************ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGR*Y***********************VTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVS********
Disordered Region (DISOPRED)
*QQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCA***************GGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFET******************TKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFLQEGTM
Disordered Region (DISEMBL)
MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGT********TDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFLQEGTM
Disordered Region (DISPRO)
**QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFLQE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFLQEGTM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
P52899	397	Probable pyruvate dehydro	yes	N/A	0.470	0.420	0.664	2e-68
P26267	396	Pyruvate dehydrogenase E1	N/A	N/A	0.473	0.424	0.655	9e-68
P26284	390	Pyruvate dehydrogenase E1	yes	N/A	0.473	0.430	0.655	1e-67
P35486	390	Pyruvate dehydrogenase E1	yes	N/A	0.473	0.430	0.655	1e-67
A7MB35	390	Pyruvate dehydrogenase E1	yes	N/A	0.473	0.430	0.655	1e-67
P08559	390	Pyruvate dehydrogenase E1	no	N/A	0.473	0.430	0.65	2e-67
P29804	389	Pyruvate dehydrogenase E1	yes	N/A	0.473	0.431	0.644	3e-67
Q5R490	390	Pyruvate dehydrogenase E1	yes	N/A	0.473	0.430	0.644	2e-66
A5A6L0	390	Pyruvate dehydrogenase E1	yes	N/A	0.473	0.430	0.644	2e-66
P26268	391	Pyruvate dehydrogenase E1	N/A	N/A	0.509	0.462	0.609	2e-66

>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2 SV=1

 Score =  259 bits (663), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 143/179 (79%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQ PLG G+A A +Y+    VC  LYGDGA+NQGQ FEA N+AKLW +P
Sbjct: 152 KNFYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAANQGQLFEATNMAKLWDLP 211

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
            ++VCENNG+GMGT+AERSSAST+YYTRGDY+PGIWVDGMD+LAVREA+K+A  Y  SGK
Sbjct: 212 VLFVCENNGFGMGTTAERSSASTEYYTRGDYVPGIWVDGMDILAVREATKWAKEYCDSGK 271

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GPL++E+ TYRY GHSMSDPGTS+            RDPIT FK++++ S LAT +ELK
Sbjct: 272 GPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELK 330

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1

>sp|P26267|ODPA_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1

 Score =  257 bits (657), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 145/180 (80%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           +NFYGGNGIVGAQ PLGTGIAFA +Y+    VC  ++GDGA+NQGQ FE+ N+AKLW +P
Sbjct: 154 ENFYGGNGIVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQGQLFESMNMAKLWDLP 213

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
            +YVCENNGYGMGT+A RSSASTDYYTRGDY+PGIWVDGMDVLAVR+A ++A  + ++GK
Sbjct: 214 VLYVCENNGYGMGTAAARSSASTDYYTRGDYVPGIWVDGMDVLAVRQAVRWAKEWCNAGK 273

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           GPL++E+ TYRYSGHSMSDPGTS+            RDPIT FK+K++ + L T DE+KE
Sbjct: 274 GPLMIEMATYRYSGHSMSDPGTSYRTREEVQEVRKTRDPITGFKDKIVTAGLVTEDEIKE 333

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Ascaris suum (taxid: 6253)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P26284|ODPA_RAT Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct: 218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P35486|ODPA_MOUSE Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct: 218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|A7MB35|ODPA_BOVIN Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct: 218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P08559|ODPA_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 277

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P29804|ODPA_PIG Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1

 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 140/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 157 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 216

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           C+++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 217 CVFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 276

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 277 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 336

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R490|ODPA_PONAB Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ F AYN+A LW +P
Sbjct: 158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFGAYNMAALWKLP 217

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 277

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|A5A6L0|ODPA_PANTR Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pan troglodytes GN=PDHA1 PE=2 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 277

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMS PG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 278 GPILMELQTYRYHGHSMSGPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P26268|ODPT_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 149/197 (75%), Gaps = 16/197 (8%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           +NFYGGNGIVGAQ PLGTGIAFA +YK    VC  L+GDGA+NQGQ +E+ N+AKLW +P
Sbjct: 149 ENFYGGNGIVGAQQPLGTGIAFAMKYKKQKNVCITLFGDGATNQGQLYESMNMAKLWELP 208

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
            +YVCENNGYGMGTSA RSSASTDYYTRGDY+PG WVDGMDVLAVR+A ++   + ++GK
Sbjct: 209 VLYVCENNGYGMGTSAARSSASTDYYTRGDYVPGFWVDGMDVLAVRQAIRWGKEWCNAGK 268

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           GPL++E+ TYRY GHSMSDPGTS+            RDPIT FK+K++ + L T DELKE
Sbjct: 269 GPLMIEMATYRYGGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDKIVTAGLVTEDELKE 328

Query: 181 ACAVGMRAVMREQDSII 197
                 + + +E D+ +
Sbjct: 329 VD----KEIRKEVDAAV 341

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Ascaris suum (taxid: 6253)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
193629643	395	PREDICTED: probable pyruvate dehydrogena	0.473	0.425	0.761	4e-77
357611735	399	pyruvate dehydrogenase [Danaus plexippus	0.473	0.421	0.744	4e-76
307193004	379	Probable pyruvate dehydrogenase E1 compo	0.470	0.440	0.737	1e-75
340722783	396	PREDICTED: probable pyruvate dehydrogena	0.470	0.421	0.748	2e-75
340722785	402	PREDICTED: probable pyruvate dehydrogena	0.470	0.415	0.748	2e-75
328725071	341	PREDICTED: probable pyruvate dehydrogena	0.473	0.492	0.744	3e-75
383857291	402	PREDICTED: probable pyruvate dehydrogena	0.473	0.417	0.738	5e-75
350424173	396	PREDICTED: probable pyruvate dehydrogena	0.470	0.421	0.743	7e-75
332020438	396	Putative pyruvate dehydrogenase E1 compo	0.470	0.421	0.726	1e-74
350424176	402	PREDICTED: probable pyruvate dehydrogena	0.470	0.415	0.743	1e-74

>gi|193629643|ref|XP_001950931.1| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Acyrthosiphon pisum]

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 137/180 (76%), Positives = 156/180 (86%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLGTGIA AAQY GTGGVCF LYGDGASNQGQ FEAYN+AKLW +P
Sbjct: 155 KNFYGGNGIVGAQVPLGTGIALAAQYLGTGGVCFTLYGDGASNQGQVFEAYNMAKLWNLP 214

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           C++VCENNGY MGTS+ERS+++T YYTRGDYIPGIWVDGMDVLAVREASKFAV++  +G 
Sbjct: 215 CVFVCENNGYAMGTSSERSASNTSYYTRGDYIPGIWVDGMDVLAVREASKFAVDHCVNGN 274

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           GP++LE VTYRYSGHSMSDPGTS+            RDPITSFKEK+L++ LATVD+LK+
Sbjct: 275 GPILLETVTYRYSGHSMSDPGTSYRTREEIQAVRMTRDPITSFKEKILSTNLATVDDLKK 334

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611735|gb|EHJ67634.1| pyruvate dehydrogenase [Danaus plexippus]

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 134/180 (74%), Positives = 155/180 (86%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y+  GGVCFALYGDGA+NQGQ FEAYN+AKLW +P
Sbjct: 162 KNFYGGNGIVGAQVPLGAGIAFAHKYRNDGGVCFALYGDGAANQGQIFEAYNMAKLWNLP 221

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS ERSSASTDYY+RGDYIPG+WVDGMDV+  REA++FA++Y +SGK
Sbjct: 222 CIFVCENNGYGMGTSVERSSASTDYYSRGDYIPGLWVDGMDVVTTREATRFAIDYCTSGK 281

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           GPLV+E+ TYRYSGHSMSDPGTS+            RDPITSFKEK+L++ LAT D+LKE
Sbjct: 282 GPLVIEMETYRYSGHSMSDPGTSYRTRDEVQAVRQTRDPITSFKEKILSNGLATADQLKE 341

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193004|gb|EFN75992.1| Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Harpegnathos saltator]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 152/179 (84%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y  TGGVC ALYGDGA+NQGQ FE YN+AKLW +P
Sbjct: 140 KNFYGGNGIVGAQVPLGVGIALAHKYLNTGGVCLALYGDGAANQGQVFEVYNMAKLWDVP 199

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS ER+SA+TDYYTRGDY+PGIWVDGMDVLAVREA+KFA++Y +SGK
Sbjct: 200 CIFVCENNGYGMGTSVERASANTDYYTRGDYVPGIWVDGMDVLAVREATKFAIDYCTSGK 259

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GP+V+E VTYRYSGHSMSDPGTS+            RDP+TSFKE++LN+ L T DE+K
Sbjct: 260 GPMVMETVTYRYSGHSMSDPGTSYRTREEVQEVRQTRDPLTSFKERILNANLVTADEIK 318

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722783|ref|XP_003399781.1| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform 1 [Bombus terrestris]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 151/179 (84%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y   GGVC  LYGDGA+NQGQ FE YN+AKLW +P
Sbjct: 157 KNFYGGNGIVGAQVPLGVGIAFANKYMNNGGVCITLYGDGAANQGQVFEVYNMAKLWDVP 216

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS +R+SASTDYYTRGDYIPGIWVDGMDVLAVREA+KFA++Y +SGK
Sbjct: 217 CIFVCENNGYGMGTSVDRASASTDYYTRGDYIPGIWVDGMDVLAVREATKFAIDYCTSGK 276

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GPLVLE VTYRYSGHSMSDPGTS+            RDPIT FKE++LN+ LAT +E+K
Sbjct: 277 GPLVLEAVTYRYSGHSMSDPGTSYRTREEIQEVRQTRDPITGFKERVLNANLATPEEIK 335

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722785|ref|XP_003399782.1| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform 2 [Bombus terrestris]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 151/179 (84%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y   GGVC  LYGDGA+NQGQ FE YN+AKLW +P
Sbjct: 163 KNFYGGNGIVGAQVPLGVGIAFANKYMNNGGVCITLYGDGAANQGQVFEVYNMAKLWDVP 222

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS +R+SASTDYYTRGDYIPGIWVDGMDVLAVREA+KFA++Y +SGK
Sbjct: 223 CIFVCENNGYGMGTSVDRASASTDYYTRGDYIPGIWVDGMDVLAVREATKFAIDYCTSGK 282

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GPLVLE VTYRYSGHSMSDPGTS+            RDPIT FKE++LN+ LAT +E+K
Sbjct: 283 GPLVLEAVTYRYSGHSMSDPGTSYRTREEIQEVRQTRDPITGFKERVLNANLATPEEIK 341

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725071|ref|XP_001949530.2| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like, partial [Acyrthosiphon pisum]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/180 (74%), Positives = 152/180 (84%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA AA+Y GTGGVCF LYGDGA+NQGQ FEAYN++KLW IP
Sbjct: 154 KNFYGGNGIVGAQVPLGAGIALAAKYLGTGGVCFTLYGDGAANQGQVFEAYNMSKLWDIP 213

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
            +YVCENNGYGMGTS+ER+SAS  YYTRGDYIPGIWVDGMDVLAVREA++FA++Y +SGK
Sbjct: 214 VVYVCENNGYGMGTSSERASASVAYYTRGDYIPGIWVDGMDVLAVREAARFAIDYCTSGK 273

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           GPLVLE  TYRYSGHSMSDPGTS+            RDPITSFKEK++ + L  +DELK+
Sbjct: 274 GPLVLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPITSFKEKIIGANLVNIDELKQ 333

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857291|ref|XP_003704138.1| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [Megachile rotundata]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 152/180 (84%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y  TGGVC  LYGDGA+NQGQ FE YN+AKLW +P
Sbjct: 163 KNFYGGNGIVGAQVPLGVGIAFAKKYMNTGGVCVTLYGDGAANQGQVFEVYNMAKLWDVP 222

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS ERSSASTDYYTRGD+IPGIWVDGMDVLA+REA+KFAV++ +SGK
Sbjct: 223 CIFVCENNGYGMGTSVERSSASTDYYTRGDFIPGIWVDGMDVLAMREATKFAVDFCTSGK 282

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           GP++LE VTYRYSGHSMSDPGTS+            RDPIT FKE++LNS L + DE+K+
Sbjct: 283 GPIILEAVTYRYSGHSMSDPGTSYRTREEVQEVRQTRDPITGFKERVLNSNLISQDEIKK 342

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424173|ref|XP_003493711.1| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform 1 [Bombus impatiens]

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 151/179 (84%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y   GGVC  LYGDGA+NQGQ FE YN+AKLW +P
Sbjct: 157 KNFYGGNGIVGAQVPLGVGIAFANKYMNNGGVCVTLYGDGAANQGQVFEVYNMAKLWDVP 216

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS +R+SASTDYYTRGDYIPGIWVDGMDVLAV+EA+KFA++Y +SGK
Sbjct: 217 CIFVCENNGYGMGTSVDRASASTDYYTRGDYIPGIWVDGMDVLAVKEATKFAIDYCTSGK 276

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GPLVLE VTYRYSGHSMSDPGTS+            RDPIT FKE++LN+ LAT +E+K
Sbjct: 277 GPLVLETVTYRYSGHSMSDPGTSYRTREEIQEVRQTRDPITGFKERVLNANLATPEEIK 335

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020438|gb|EGI60858.1| Putative pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Acromyrmex echinatior]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/179 (72%), Positives = 151/179 (84%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y   GGVC  LYGDGA+NQGQ FE YNIAKLW +P
Sbjct: 157 KNFYGGNGIVGAQVPLGVGIAFAQKYLNNGGVCLTLYGDGAANQGQVFEVYNIAKLWDVP 216

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS ER++AST+YYTRGDY+PGIWVDGMDVLAVREA+KFA+++ +SGK
Sbjct: 217 CIFVCENNGYGMGTSVERAAASTEYYTRGDYVPGIWVDGMDVLAVREATKFAIDHCTSGK 276

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GP+++E VTYRYSGHSMSDPGTS+            RDP+TSFKE++LN  LAT DE+K
Sbjct: 277 GPIIMETVTYRYSGHSMSDPGTSYRTREEVQEVRQTRDPLTSFKERILNFNLATADEIK 335

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424176|ref|XP_003493712.1| PREDICTED: probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform 2 [Bombus impatiens]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 151/179 (84%), Gaps = 12/179 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIAFA +Y   GGVC  LYGDGA+NQGQ FE YN+AKLW +P
Sbjct: 163 KNFYGGNGIVGAQVPLGVGIAFANKYMNNGGVCVTLYGDGAANQGQVFEVYNMAKLWDVP 222

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI+VCENNGYGMGTS +R+SASTDYYTRGDYIPGIWVDGMDVLAV+EA+KFA++Y +SGK
Sbjct: 223 CIFVCENNGYGMGTSVDRASASTDYYTRGDYIPGIWVDGMDVLAVKEATKFAIDYCTSGK 282

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELK 179
           GPLVLE VTYRYSGHSMSDPGTS+            RDPIT FKE++LN+ LAT +E+K
Sbjct: 283 GPLVLETVTYRYSGHSMSDPGTSYRTREEIQEVRQTRDPITGFKERVLNANLATPEEIK 341

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
WB|WBGene00011510	414	pdha-1 [Caenorhabditis elegans	0.470	0.403	0.664	1.1e-62
FB|FBgn0028325	443	l(1)G0334 "lethal (1) G0334" [	0.495	0.397	0.642	6.2e-62
UNIPROTKB|Q5F426	399	PDHA1 "Uncharacterized protein	0.504	0.448	0.630	1.6e-61
UNIPROTKB|A7MB35	390	PDHA1 "Pyruvate dehydrogenase	0.473	0.430	0.655	2.1e-61
MGI|MGI:97532	390	Pdha1 "pyruvate dehydrogenase	0.473	0.430	0.655	2.1e-61
RGD|2318086	390	LOC100365902 "pyruvate dehydro	0.473	0.430	0.655	2.1e-61
UNIPROTKB|Q4FZZ4	390	LOC100365902 "RCG36458" [Rattu	0.473	0.430	0.655	2.1e-61
RGD|3286	390	Pdha1 "pyruvate dehydrogenase	0.473	0.430	0.655	2.1e-61
ZFIN|ZDB-GENE-040718-96	400	pdha1b "pyruvate dehydrogenase	0.473	0.42	0.627	3.4e-61
UNIPROTKB|E2RL90	390	PDHA1 "Pyruvate dehydrogenase	0.473	0.430	0.65	4.3e-61

WB|WBGene00011510 pdha-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 119/179 (66%), Positives = 143/179 (79%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQ PLG G+A A +Y+    VC  LYGDGA+NQGQ FEA N+AKLW +P
Sbjct:   169 KNFYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAANQGQLFEATNMAKLWDLP 228

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
              ++VCENNG+GMGT+AERSSAST+YYTRGDY+PGIWVDGMD+LAVREA+K+A  Y  SGK
Sbjct:   229 VLFVCENNGFGMGTTAERSSASTEYYTRGDYVPGIWVDGMDILAVREATKWAKEYCDSGK 288

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELK 179
             GPL++E+ TYRY GHSMSDPGTS+R            DPIT FK++++ S LAT +ELK
Sbjct:   289 GPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELK 347

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

FB|FBgn0028325 l(1)G0334 "lethal (1) G0334" [Drosophila melanogaster (taxid:7227)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 124/193 (64%), Positives = 148/193 (76%)

Query:    14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
             NFYGGNGIVGAQVPLG G+  A +YKG GG+C ALYGDGA+NQGQ FEAYN+A LW +P 
Sbjct:   207 NFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLPV 266

Query:    74 IYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKG 133
             I+VCENN YGMGTS+ER+S +TDYYTRGD +PGIWVDGMDVLAVR A++FA+NY ++  G
Sbjct:   267 IFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATEFAINYVNT-HG 325

Query:   134 PLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKEA 181
             PLV+E  TYRYSGHSMSDPGTS+R            DPITSFKE  +   L T DE+K  
Sbjct:   326 PLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLITTDEVK-- 383

Query:   182 CAVGMRAVMREQD 194
              A+ ++ V +E D
Sbjct:   384 -AIDLK-VRKEVD 394

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q5F426 PDHA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 121/192 (63%), Positives = 145/192 (75%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FE YN+A LW +P
Sbjct:   165 KNFYGGNGIVGAQVPLGAGIALACKYFGKNEVCLTLYGDGAANQGQIFETYNMAALWKLP 224

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMDVL VREA+KFA  Y  +GK
Sbjct:   225 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDVLCVREAAKFAAEYCRAGK 284

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+V+E+ TYRY GHSMSDPG S+R            DPIT  K++M+N+ LA+V+ELKE
Sbjct:   285 GPIVMELQTYRYHGHSMSDPGISYRTREEIQEVRSKSDPITLLKDRMINNNLASVEELKE 344

Query:   181 ACAVGMRAVMRE 192
                V +R  + E
Sbjct:   345 I-DVAVRKEIEE 355

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|A7MB35 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 118/180 (65%), Positives = 140/180 (77%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct:   158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct:   218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct:   278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

MGI|MGI:97532 Pdha1 "pyruvate dehydrogenase E1 alpha 1" [Mus musculus (taxid:10090)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 118/180 (65%), Positives = 140/180 (77%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct:   158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct:   218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct:   278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISO;IMP

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO

GO:0006096 "glycolysis" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP

RGD|2318086 LOC100365902 "pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like" [Rattus norvegicus (taxid:10116)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 118/180 (65%), Positives = 140/180 (77%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct:   158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct:   218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct:   278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q4FZZ4 LOC100365902 "RCG36458" [Rattus norvegicus (taxid:10116)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 118/180 (65%), Positives = 140/180 (77%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct:   158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct:   218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct:   278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

GO:0006096 "glycolysis" evidence=IEA

RGD|3286 Pdha1 "pyruvate dehydrogenase (lipoamide) alpha 1" [Rattus norvegicus (taxid:10116)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 118/180 (65%), Positives = 140/180 (77%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct:   158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA+KFA  Y  SGK
Sbjct:   218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGK 277

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct:   278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISO;ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IDA

GO:0006096 "glycolysis" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

ZFIN|ZDB-GENE-040718-96 pdha1b "pyruvate dehydrogenase (lipoamide) alpha 1b" [Danio rerio (taxid:7955)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 113/180 (62%), Positives = 144/180 (80%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG G+A A QY+G   +C  LYGDGA+NQGQ FE++N+A LW +P
Sbjct:   168 KNFYGGNGIVGAQVPLGAGVALACQYQGKNEICVTLYGDGAANQGQIFESFNMAALWKLP 227

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER+SASTDYY RGD+IPG+ VDGMDVL VREA+KFA +Y  SGK
Sbjct:   228 CIFICENNKYGMGTSVERASASTDYYKRGDFIPGLRVDGMDVLGVREATKFAADYCRSGK 287

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPIT+ K++M++S +A+++E+K+
Sbjct:   288 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPITTLKDRMISSNMASLEEIKD 347

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

UNIPROTKB|E2RL90 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form" [Canis lupus familiaris (taxid:9615)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 117/180 (65%), Positives = 140/180 (77%)

Query:    13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
             KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct:   158 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 217

Query:    73 CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
             CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct:   218 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 277

Query:   133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
             GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct:   278 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

GO:0005739 "mitochondrion" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z5N4	ODPA1_ORYSJ	1, ., 2, ., 4, ., 1	0.5380	0.5070	0.4615	yes	N/A
P52899	ODPA_CAEEL	1, ., 2, ., 4, ., 1	0.6648	0.4704	0.4206	yes	N/A
P29804	ODPA_PIG	1, ., 2, ., 4, ., 1	0.6444	0.4732	0.4318	yes	N/A
P35486	ODPA_MOUSE	1, ., 2, ., 4, ., 1	0.6555	0.4732	0.4307	yes	N/A
Q54C70	ODPA_DICDI	1, ., 2, ., 4, ., 1	0.5786	0.4676	0.4403	yes	N/A
O13366	ODPA_KLULA	1, ., 2, ., 4, ., 1	0.5736	0.5183	0.4466	yes	N/A
P16387	ODPA_YEAST	1, ., 2, ., 4, ., 1	0.6045	0.4647	0.3928	yes	N/A
P52901	ODPA1_ARATH	1, ., 2, ., 4, ., 1	0.5380	0.5070	0.4627	yes	N/A
A5A6L0	ODPA_PANTR	1, ., 2, ., 4, ., 1	0.6444	0.4732	0.4307	yes	N/A
Q10489	ODPA_SCHPO	1, ., 2, ., 4, ., 1	0.6089	0.4704	0.4083	yes	N/A
A7MB35	ODPA_BOVIN	1, ., 2, ., 4, ., 1	0.6555	0.4732	0.4307	yes	N/A
Q5R490	ODPA_PONAB	1, ., 2, ., 4, ., 1	0.6444	0.4732	0.4307	yes	N/A
Q9R9N5	ODPA_RHIME	1, ., 2, ., 4, ., 1	0.5359	0.4732	0.4827	yes	N/A
P26284	ODPA_RAT	1, ., 2, ., 4, ., 1	0.6555	0.4732	0.4307	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	355
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	8e-91
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	2e-84
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	1e-83
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	1e-79
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	7e-70
TIGR03181	341	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E	1e-43
CHL00149	341	CHL00149, odpA, pyruvate dehydrogenase E1 componen	5e-43
PLN02374	433	PLN02374, PLN02374, pyruvate dehydrogenase (acetyl	1e-41
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	1e-28
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	2e-23
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	1e-21
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	3e-18
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	9e-18
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	3e-17
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	4e-13
PLN02374	433	PLN02374, PLN02374, pyruvate dehydrogenase (acetyl	3e-09
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	1e-07
CHL00149	341	CHL00149, odpA, pyruvate dehydrogenase E1 componen	1e-07
cd02016	265	cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate	9e-07
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	2e-06
TIGR00239	929	TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas	2e-05
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	3e-05
COG0567	906	COG0567, SucA, 2-oxoglutarate dehydrogenase comple	5e-05

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  274 bits (703), Expect = 8e-91
 Identities = 101/181 (55%), Positives = 127/181 (70%), Gaps = 12/181 (6%)

Query: 12  PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
            KNFYGG+GIVGAQVPL TG+AFA +Y+G   V    +GDGA+NQGQ +E++N+A LW +
Sbjct: 102 EKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKL 161

Query: 72  PCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASKFAVNYAS 129
           P I+V ENN Y MGT+ ERSS+ TD Y RG+   IPG  VDGMDVLAVREA+K AV  A 
Sbjct: 162 PVIFVIENNLYAMGTAVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERAR 221

Query: 130 SGKGPLVLEVVTYRYSGHSMSDPGT----------SFRDPITSFKEKMLNSELATVDELK 179
           SGKGP++LE+ TYR+ GHSMSDP              RDPI   K +++   +A+ +ELK
Sbjct: 222 SGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELK 281

Query: 180 E 180
           E
Sbjct: 282 E 282

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score =  259 bits (664), Expect = 2e-84
 Identities = 107/179 (59%), Positives = 130/179 (72%), Gaps = 13/179 (7%)

Query: 14  NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
           NFYGG+GIVGAQVPLG G+AFA +Y     V FALYGDGA+NQGQ FEA NIA LW +P 
Sbjct: 132 NFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPV 191

Query: 74  IYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKG 133
           I+VCENN YGMGT+  R++ S  YY RGDY+PG+ VDGMDVLAV++A KFA  +A S  G
Sbjct: 192 IFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NG 250

Query: 134 PLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATVDELKE 180
           P+VLE+ TYRY GHSMSDPG+++            RDPI   ++ +L  ELAT  ELK+
Sbjct: 251 PIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKD 309

Length = 362

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score =  255 bits (654), Expect = 1e-83
 Identities = 100/181 (55%), Positives = 122/181 (67%), Gaps = 14/181 (7%)

Query: 14  NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
            FYGGNGIVGAQVPLG GIA AA+Y+G   V   L+GDGA+NQGQ FEA N A LW +P 
Sbjct: 98  RFYGGNGIVGAQVPLGAGIALAAKYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPV 157

Query: 74  IYVCENNGYGMGTSAERSSASTDYYT--RGDYIPGIWVDGMDVLAVREASKFAVNYASSG 131
           I+VCENN Y + T AERSSAST Y    RG  IPGI VDGMD LAV +A KFA   A +G
Sbjct: 158 IFVCENNQYAISTPAERSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTG 217

Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELK 179
            GP ++E+VTYRY GHSMSD  +++R            DPI   K+ +++  + + +ELK
Sbjct: 218 NGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELK 277

Query: 180 E 180
           E
Sbjct: 278 E 278

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score =  244 bits (626), Expect = 1e-79
 Identities = 84/182 (46%), Positives = 107/182 (58%), Gaps = 13/182 (7%)

Query: 12  PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
            KNF+GGNGIVG QVPL  G A A +Y+G   V    +GDGA+N+G   EA N A LW +
Sbjct: 96  EKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKL 155

Query: 72  PCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASKFAVNYAS 129
           P I+VCENNGY + T   R +A T    R     IPGI VDG DVLAV EA+K AV  A 
Sbjct: 156 PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERAR 215

Query: 130 SGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELATVDEL 178
           +G GP ++E VTYR  GHS SD  + +R           DPI   ++ ++ + + T +EL
Sbjct: 216 AGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEEL 275

Query: 179 KE 180
             
Sbjct: 276 AA 277

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score =  222 bits (567), Expect = 7e-70
 Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 14/190 (7%)

Query: 6   IVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYN 64
           +  +   K F GG+GIVG Q+PL  G A A +Y+GT  GV  A +GDGA+NQG   EA N
Sbjct: 122 MHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALN 181

Query: 65  IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASK 122
            A +W +P ++V ENN Y +     R +A+     R     IPG+ VDG DVLAV EA+K
Sbjct: 182 FAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241

Query: 123 FAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSE 171
            AV  A +G+GP ++E VTYRY GHS SD  + +R           DPI   ++ ++ + 
Sbjct: 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPIVRLRKYLIEAG 301

Query: 172 LATVDELKEA 181
           + + +EL+  
Sbjct: 302 ILSEEELEAI 311

Length = 358

>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  153 bits (389), Expect = 1e-43
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 10  PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW 69
           P   N    N  +G Q     G+A+A + +G   V    +GDG +++G  +EA N A ++
Sbjct: 112 PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVF 171

Query: 70  GIPCIYVCENNGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNY 127
             P ++  +NN + +     + +A+     +     IPG+ VDG DVLAV   +K AV  
Sbjct: 172 KAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231

Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELAT-- 174
           A SG GP ++E VTYR   H+ +D  T +R           DPI   ++ +    L    
Sbjct: 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEE 291

Query: 175 -VDELKEAC 182
             + L+E  
Sbjct: 292 QEEALEEEA 300

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341

>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed

 Score =  151 bits (384), Expect = 5e-43
 Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 23/191 (12%)

Query: 11  SPKNFYGGNGIVGAQVPLGTGIAFAAQY-----KGTG----GVCFALYGDGASNQGQNFE 61
           +P NF GG   +G  +P+  G AF + Y     K         CF  +GDG +N GQ FE
Sbjct: 119 APHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACF--FGDGTTNNGQFFE 176

Query: 62  AYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVRE 119
             N+A LW +P I+V ENN + +G +  RS++  + + + +   +PGI VDGMDVLAVRE
Sbjct: 177 CLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVRE 236

Query: 120 ASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT----------SFRDPITSFKEKMLN 169
            +K AV  A  G GP ++E +TYR+ GHS++DP              RDPI   K  +++
Sbjct: 237 VAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIID 296

Query: 170 SELATVDELKE 180
           +ELA+  EL +
Sbjct: 297 NELASQKELNK 307

Length = 341

>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring)

 Score =  150 bits (380), Expect = 1e-41
 Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 19/188 (10%)

Query: 11  SPKNFYGGNGIVGAQVPLGTGIAFAAQYK-------GTGGVCFALYGDGASNQGQNFEAY 63
              N  GG   +G  +P+ TG AF+++Y+           V  A +GDG  N GQ FE  
Sbjct: 185 KEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECL 244

Query: 64  NIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREAS 121
           N+A LW +P ++V ENN + +G S  R+++  + + +G    +PG+ VDGMDVL VRE +
Sbjct: 245 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVA 304

Query: 122 KFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT----------SFRDPITSFKEKMLNSE 171
           K A+  A  G+GP ++E  TYR+ GHS++DP            + RDPI + K+ ++ + 
Sbjct: 305 KEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKYLIENG 364

Query: 172 LATVDELK 179
           LAT  ELK
Sbjct: 365 LATEAELK 372

Length = 433

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  112 bits (283), Expect = 1e-28
 Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 14/87 (16%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA AVG+ A ++  D +I++YR HG     GV    V++ELTGR TGC            
Sbjct: 41  EAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRETGC------------ 88

Query: 240 AKGKGGSMHMYA--KNFYGGNGIVGAQ 264
           +KGKGGSMHM+   KNFYGG+GIVGAQ
Sbjct: 89  SKGKGGSMHMFDREKNFYGGHGIVGAQ 115

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score = 99.4 bits (248), Expect = 2e-23
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 16/90 (17%)

Query: 179 KEACAVGMRAVMREQDSIISAYRVHGWTYL-MGVSVFGVLSELTGRRTGCAKGKGPISWE 237
           +EA AVGM A + ++D+II+AYR H  T+L  G +V  V +EL GR+ G           
Sbjct: 68  QEAVAVGMEAAITKEDAIITAYRDHC-THLGRGGTVLEVFAELMGRKDG----------- 115

Query: 238 CCAKGKGGSMHMYAK--NFYGGNGIVGAQT 265
            C++GKGGSMH Y K  NFYGG+GIVGAQ 
Sbjct: 116 -CSRGKGGSMHFYKKDANFYGGHGIVGAQV 144

Length = 362

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score = 93.3 bits (233), Expect = 1e-21
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 14/87 (16%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA AVG+ A +R  D +   YR HG     GV +  +L+EL G+ TG             
Sbjct: 35  EAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKETGP------------ 82

Query: 240 AKGKGGSMHM--YAKNFYGGNGIVGAQ 264
            KG+GGSMH+    KNF+GGNGIVG Q
Sbjct: 83  CKGRGGSMHIGDKEKNFFGGNGIVGGQ 109

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 16/89 (17%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA  VG+ A +   D +I  YR HG     GVS+  V++ELTG   G            C
Sbjct: 33  EALQVGIAAALNPGDYVIPTYRDHGNLLARGVSLEQVMAELTGNEAG------------C 80

Query: 240 AKGKGGSMHMYAK----NFYGGNGIVGAQ 264
           +KGKGGSMH Y       FYGGNGIVGAQ
Sbjct: 81  SKGKGGSMHGYYAPKNNRFYGGNGIVGAQ 109

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score = 83.1 bits (206), Expect = 9e-18
 Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 180 EACAVGMRAVMRE-QDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
           EA  VG  A +R  +D I   YR HG     GV +  +++EL G+ TG            
Sbjct: 66  EAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGP----------- 114

Query: 239 CAKGKGGSMHMYAK--NFYGGNGIVGAQ 264
             KG+GGSMH   K   F GG+GIVG Q
Sbjct: 115 -CKGRGGSMHYSDKEKGFLGGSGIVGTQ 141

Length = 358

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 279 ASEATFETK-PFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
               T ET  PFK H   + PS  V  +KQ+ + ++R M  +RR+E +A +LYK K+IRG
Sbjct: 2   TDPITIETPVPFKGHLC-DPPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRG 60

Query: 338 FCHLYSGQ 345
           FCHLY GQ
Sbjct: 61  FCHLYDGQ 68

Length = 362

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 22/40 (55%), Positives = 24/40 (60%)

Query: 306 KQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
           K++ L  YR M  IRR E  AG LY    I GFCHLY GQ
Sbjct: 1   KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQ 40

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring)

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 26/128 (20%)

Query: 179 KEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
           +EA + G   ++++ DS++S YR H      GV    V+SEL G+ TGC           
Sbjct: 124 QEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGC----------- 172

Query: 239 CAKGKGGSMHMYAK--NFYGGNGIVGAQTLKSLLKSISGRSYASEATFETKPFKLHKLSE 296
             +G+GGSMHM++K  N  GG   +G            G   A+ A F +K ++   L E
Sbjct: 173 -CRGQGGSMHMFSKEHNLLGGFAFIG-----------EGIPVATGAAFSSK-YRREVLKE 219

Query: 297 GPSNKVTV 304
              + VT+
Sbjct: 220 ESCDDVTL 227

Length = 433

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 312 YYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
            YR M  IRR +     LY++  I GF HL  GQ
Sbjct: 1   LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQ 34

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 14/86 (16%)

Query: 179 KEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
           +EA + G+  ++ E D + S YR H      GV    V++EL G+ TGC           
Sbjct: 58  QEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGC----------- 106

Query: 239 CAKGKGGSMHMY--AKNFYGGNGIVG 262
            ++G+GGSMH++    NF GG   +G
Sbjct: 107 -SRGRGGSMHIFSAPHNFLGGFAFIG 131

Length = 341

>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 27  PLGTGIAFAAQYKGTGG-----VCFALYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVC 77
           P+  G   A Q     G     +   ++GD A + QG  +E  N++ L G      I++ 
Sbjct: 120 PVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIV 179

Query: 78  ENNGYGMGTSAERSSASTDYYT---RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGP 134
            NN  G  T    S  S+ Y T   +    P   V+G D  AV  A++ A+ Y    K  
Sbjct: 180 VNNQIGFTTDPRDSR-SSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKD 238

Query: 135 LVLEVVTYRYSGHS-MSDPGTSFRDPI 160
           +V+++V YR  GH+ + +P  SF  P+
Sbjct: 239 VVIDLVCYRRHGHNELDEP--SFTQPL 263

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. Length = 265

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 302 VTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
             ++K++ L  YR M  IRR +     L ++  I GF HLY GQ
Sbjct: 22  AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQ 65

Length = 358

>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 48  LYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVCENNGYGMGTSAERSSASTDYYT---R 100
           ++GD A + QG   E  N++KL G      I++  NN  G  T+    + ST Y +   +
Sbjct: 349 IHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGF-TTNPLDARSTPYCSDLAK 407

Query: 101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151
               P   V+  D  AV  A++ AV Y ++ K  + +++V YR  GH+ +D
Sbjct: 408 MIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEAD 458

The 2-oxoglutarate dehydrogenase complex consists of this thiamine pyrophosphate-binding subunit (E1), dihydrolipoamide succinyltransferase (E2), and lipoamide dehydrogenase (E3). The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase [Energy metabolism, TCA cycle]. Length = 929

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 314 RQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
            +M T+RR+E +   LY+ K IRGFCHLY+GQ
Sbjct: 1   YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQ 32

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 31  GIAFAAQ-YKGTGG----VCFALYGDGA-SNQGQNFEAYNIAKLWGI---PCIYVCENNG 81
           G   A Q   G       +   ++GD A + QG   E  N+++L G       ++  NN 
Sbjct: 309 GSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQ 368

Query: 82  YGMGTSAERSSASTDYYT---RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
            G  TS    + ST Y T   +    P   V+  D  AV  A   A+ Y +  K  +V++
Sbjct: 369 IGFTTSP-ADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVID 427

Query: 139 VVTYRYSGHSMSD 151
           +V YR  GH+  D
Sbjct: 428 LVCYRRHGHNEGD 440

Length = 906

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	100.0
KOG0225|consensus	394		100.0
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	100.0
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	100.0
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	100.0
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	100.0
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	100.0
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
KOG1182|consensus	432		100.0
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	99.97
KOG0225|consensus	394		99.93
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.88
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	99.87
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.86
PRK12754	663	transketolase; Reviewed	99.84
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.84
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	99.83
PRK12753	663	transketolase; Reviewed	99.83
PRK05899	624	transketolase; Reviewed	99.83
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.82
PTZ00089	661	transketolase; Provisional	99.82
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.81
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.81
PLN02790	654	transketolase	99.81
COG3959	243	Transketolase, N-terminal subunit [Carbohydrate tr	99.8
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.79
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	99.78
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.78
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.78
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.77
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.77
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.76
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.76
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.76
PF00456	332	Transketolase_N: Transketolase, thiamine diphospha	99.75
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	99.75
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.74
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	99.74
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	99.73
cd02017	386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	99.72
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	99.71
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.71
PRK08327	569	acetolactate synthase catalytic subunit; Validated	99.7
PRK06154	565	hypothetical protein; Provisional	99.7
PRK07524	535	hypothetical protein; Provisional	99.7
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.68
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	99.68
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	99.68
PRK11269	591	glyoxylate carboligase; Provisional	99.68
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	99.67
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.67
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	99.67
KOG0450|consensus	1017		99.67
PRK05858	542	hypothetical protein; Provisional	99.67
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	99.67
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	99.67
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	99.67
PRK12474	518	hypothetical protein; Provisional	99.67
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	99.67
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	99.67
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.67
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	99.67
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	99.66
PRK09124	574	pyruvate dehydrogenase; Provisional	99.66
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	99.66
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.66
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	99.66
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.66
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	99.66
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	99.66
cd02011	227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.65
PRK06163	202	hypothetical protein; Provisional	99.65
PRK08273	597	thiamine pyrophosphate protein; Provisional	99.65
PRK06546	578	pyruvate dehydrogenase; Provisional	99.65
COG0021	663	TktA Transketolase [Carbohydrate transport and met	99.65
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	99.65
PRK06457	549	pyruvate dehydrogenase; Provisional	99.65
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.65
PRK07586	514	hypothetical protein; Validated	99.65
PRK08322	547	acetolactate synthase; Reviewed	99.65
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	99.64
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	99.64
PRK08266	542	hypothetical protein; Provisional	99.64
PRK08155	564	acetolactate synthase catalytic subunit; Validated	99.64
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	99.64
PRK08617	552	acetolactate synthase; Reviewed	99.64
PLN02470	585	acetolactate synthase	99.64
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	99.63
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	99.63
PRK08611	576	pyruvate oxidase; Provisional	99.63
KOG0451|consensus	913		99.63
PLN02573	578	pyruvate decarboxylase	99.63
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	99.63
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	99.63
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	99.63
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	99.63
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	99.62
PRK07064	544	hypothetical protein; Provisional	99.62
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	99.62
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	99.62
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	99.61
PRK06112	578	acetolactate synthase catalytic subunit; Validated	99.61
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	99.61
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.61
PRK07092	530	benzoylformate decarboxylase; Reviewed	99.61
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	99.61
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	99.6
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	99.59
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	99.58
PRK08199	557	thiamine pyrophosphate protein; Validated	99.58
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	99.57
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.57
KOG0523|consensus	632		99.56
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	99.54
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	99.53
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	99.52
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	99.52
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.51
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.49
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	99.49
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.48
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.46
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.45
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.45
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	99.45
PRK05261	785	putative phosphoketolase; Provisional	99.44
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.4
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.37
KOG4166|consensus	675		99.35
KOG1185|consensus	571		99.33
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.31
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	99.31
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	99.26
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	99.25
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	99.23
COG3960	592	Glyoxylate carboligase [General function predictio	99.21
KOG1182|consensus	432		99.02
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	99.02
COG3962	617	Acetolactate synthase [Amino acid transport and me	99.0
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	98.88
KOG1184|consensus	561		98.44
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	98.15
COG1013	294	PorB Pyruvate:ferredoxin oxidoreductase and relate	98.13
PF09364	379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	98.03
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	98.02
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	97.94
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	97.51
cd03377	365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	97.26
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	96.85
COG1165	566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	96.83
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	96.6
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	96.49
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	96.33
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	96.3
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	96.0
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	95.61
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	95.53
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	95.35
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	95.3
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	95.28
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	94.39
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	94.05
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	93.9
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	93.86
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	93.6
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	93.0
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	92.6
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	91.54
PRK08611	576	pyruvate oxidase; Provisional	91.13
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	90.92
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	90.4
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	90.32
PRK06457	549	pyruvate dehydrogenase; Provisional	90.32
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	90.21
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	90.19
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	89.94
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	89.92
PRK07064	544	hypothetical protein; Provisional	89.2
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	88.9
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	88.8
PRK07524	535	hypothetical protein; Provisional	88.58
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	88.49
PRK06112	578	acetolactate synthase catalytic subunit; Validated	88.42
PRK07586	514	hypothetical protein; Validated	88.41
PRK12474	518	hypothetical protein; Provisional	88.11
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	88.09
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	88.05
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	87.88
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	87.65
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	87.39
PF02779	178	Transket_pyr: Transketolase, pyrimidine binding do	87.2
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	86.97
PRK08155	564	acetolactate synthase catalytic subunit; Validated	86.97
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	86.8
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	86.8
PRK08199	557	thiamine pyrophosphate protein; Validated	86.8
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	86.76
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	86.58
PRK08322	547	acetolactate synthase; Reviewed	86.49
PLN02470	585	acetolactate synthase	86.38
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	86.27
PRK09124	574	pyruvate dehydrogenase; Provisional	85.62
PRK11269	591	glyoxylate carboligase; Provisional	85.38
PRK08266	542	hypothetical protein; Provisional	85.1
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	85.02
PTZ00089	661	transketolase; Provisional	84.86
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	84.79
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	84.26
PRK08617	552	acetolactate synthase; Reviewed	84.26
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	84.07
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	84.05
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	84.02
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	83.85
PRK07092	530	benzoylformate decarboxylase; Reviewed	83.63
PRK08273	597	thiamine pyrophosphate protein; Provisional	83.4
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	83.36
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	82.72
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	82.64
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	82.5
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	82.16
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	81.85
PRK05858	542	hypothetical protein; Provisional	81.47
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	80.09

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=5.8e-42  Score=334.01  Aligned_cols=182  Identities=44%  Similarity=0.741  Sum_probs=167.7

Q ss_pred             CCCccccCCcccccchHHHHHHHHHHHhcCCC-CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc
Q psy14560         11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE   89 (355)
Q Consensus        11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~-~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~   89 (355)
                      ...++++.++++|.++|.|+|+|+|.|+++.+ .+++|++|||++++|.|||+||+|+.|+|||||||+||+|+||++..
T Consensus       127 ~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~  206 (358)
T COG1071         127 KEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRS  206 (358)
T ss_pred             cccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchh
Confidence            36788999999999999999999999999954 49999999999999999999999999999999999999999998777


Q ss_pred             ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----------
Q psy14560         90 RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----------  157 (355)
Q Consensus        90 ~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----------  157 (355)
                      .+...+.++.+  |+|+|+++|||+|+.+|++++++|+++||+++||+|||+.|||+.+||++||+..||          
T Consensus       207 ~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~  286 (358)
T COG1071         207 RQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK  286 (358)
T ss_pred             hcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc
Confidence            66655666656  479999999999999999999999999999999999999999999999999988898          


Q ss_pred             -cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcc
Q psy14560        158 -DPITSFKEKMLNSELATVDELKEACAVGMRAVMRE  192 (355)
Q Consensus       158 -DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~  192 (355)
                       |||.+++++|++.|++++++++++.++....+.++
T Consensus       287 ~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea  322 (358)
T COG1071         287 RDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEA  322 (358)
T ss_pred             cChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999988887766653

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=100.00  E-value=1.3e-39  Score=314.83  Aligned_cols=183  Identities=46%  Similarity=0.722  Sum_probs=164.7

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS   91 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~   91 (355)
                      ..++++.++++|.++|+|+|.|+|.|+.+.+.+++|++|||++++|.|||+||+|+.|+|||||||+||+|+++|+...+
T Consensus        93 ~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~  172 (300)
T PF00676_consen   93 GLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQ  172 (300)
T ss_dssp             TTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHH
T ss_pred             cceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCcccc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------
Q psy14560         92 SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------  157 (355)
Q Consensus        92 ~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------  157 (355)
                      .+.++++++  ++|+|+++|||+|+++|++++++|++++|++++|+|||+.|+|+.||+++|++..||            
T Consensus       173 ~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~  252 (300)
T PF00676_consen  173 TASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKR  252 (300)
T ss_dssp             CSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT
T ss_pred             ccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcC
Confidence            888888886  479999999999999999999999999999999999999999999999999888887            


Q ss_pred             cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcccc
Q psy14560        158 DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQD  194 (355)
Q Consensus       158 DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D  194 (355)
                      |||.+|+++|++.|++++++++++.++....+.++-+
T Consensus       253 DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~  289 (300)
T PF00676_consen  253 DPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVE  289 (300)
T ss_dssp             -HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888766655433

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>KOG0225|consensus

Probab=100.00  E-value=3.4e-39  Score=306.27  Aligned_cols=212  Identities=58%  Similarity=0.956  Sum_probs=187.7

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG   83 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~   83 (355)
                      .||++.+   +|+|++|++|.++|.+.|+|+|.|+++.+.+++++.|||+.+||.++|++|+|+.|+||+||||+||.||
T Consensus       152 SMHmy~k---~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yG  228 (394)
T KOG0225|consen  152 SMHMYAK---NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYG  228 (394)
T ss_pred             ceeeecc---cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCc
Confidence            3667666   4999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccCCCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------
Q psy14560         84 MGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------  157 (355)
Q Consensus        84 ~~~~~~~~~~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------  157 (355)
                      |.|+..+....++|.+++.-+|+++|||.|+++|++|.+.|.+++++++||.|+|+.|||+.|||++||.+.||      
T Consensus       229 MGTs~~Rasa~teyykRG~yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq  308 (394)
T KOG0225|consen  229 MGTSAERASASTEYYKRGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQ  308 (394)
T ss_pred             cCcchhhhhcChHHHhccCCCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHH
Confidence            99999988888999999866999999999999999999999999999999999999999999999999999898      


Q ss_pred             ------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccC
Q psy14560        158 ------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGC  227 (355)
Q Consensus       158 ------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~  227 (355)
                            |||..++++|++.++.+++|++++..+...++.++.+. ..+-        .--++.+++..++-+..+.
T Consensus       309 ~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~-A~~~--------p~p~~~eL~~dvy~~~~~~  375 (394)
T KOG0225|consen  309 EVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAF-ATAS--------PEPEPSELFTDVYVKGTGF  375 (394)
T ss_pred             HHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHH-hhcC--------CCCCHHHHHHHhhccCCCc
Confidence                  99999999999999999999999988887777665443 1111        1123455666666655553

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=100.00  E-value=1.4e-37  Score=307.00  Aligned_cols=191  Identities=57%  Similarity=0.941  Sum_probs=175.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY   82 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~   82 (355)
                      ..+|+..+ ..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+||+|+.|+||+||||+||+|
T Consensus       122 gsmH~~~~-~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~  200 (362)
T PLN02269        122 GSMHFYKK-DANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHY  200 (362)
T ss_pred             Ccccccch-hcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCE
Confidence            34565554 78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeccccCCCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----
Q psy14560         83 GMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----  157 (355)
Q Consensus        83 ~~~~~~~~~~~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-----  157 (355)
                      +++++...+...++++++++++|+++|||+|+++|++++++|++++|+ ++|+|||+.|+|+.||+++|++..||     
T Consensus       201 aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~  279 (362)
T PLN02269        201 GMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEI  279 (362)
T ss_pred             eccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHH
Confidence            999988777777889888899999999999999999999999999999 99999999999999999999876686     


Q ss_pred             -------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560        158 -------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS  195 (355)
Q Consensus       158 -------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~  195 (355)
                             |||.+|+++|++.|++++++++++.++....+.++-++
T Consensus       280 ~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~  324 (362)
T PLN02269        280 SGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAK  324 (362)
T ss_pred             HHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                   89999999999999999999999988887776665444

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=1e-36  Score=296.48  Aligned_cols=188  Identities=55%  Similarity=0.892  Sum_probs=172.0

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG   83 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~   83 (355)
                      .+|+..+ ..++.+.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++++||+||||+||+|+
T Consensus        95 ~~h~~~~-~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg  173 (315)
T TIGR03182        95 SMHMFDR-EKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA  173 (315)
T ss_pred             CCCcCch-hhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc
Confidence            4555444 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----
Q psy14560         84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----  157 (355)
Q Consensus        84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----  157 (355)
                      ++++...+...++++++|  +|+++++|||+|+++|++++++|+++++++++|+|||+.|+|+.||+++|++. ||    
T Consensus       174 ~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~-Yr~~~e  252 (315)
T TIGR03182       174 MGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAK-YRSKEE  252 (315)
T ss_pred             ccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccc-cCCHHH
Confidence            998877666678999874  79999999999999999999999999999999999999999999999999874 87    


Q ss_pred             -------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccc
Q psy14560        158 -------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQ  193 (355)
Q Consensus       158 -------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~  193 (355)
                             |||.+|+++|+++|++++++++++.++....+.+.-
T Consensus       253 ~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~  295 (315)
T TIGR03182       253 VEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAV  295 (315)
T ss_pred             HHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   999999999999999999999998888766665543

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=100.00  E-value=2e-36  Score=297.16  Aligned_cols=191  Identities=39%  Similarity=0.683  Sum_probs=171.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcC-------CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEE
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKG-------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIY   75 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~-------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~   75 (355)
                      ..+|+..+ ..++.+++|+||+++|.|+|+|+|.|+.+       ++++|||++|||++++|.+||+||+|++++||+||
T Consensus       112 gs~H~~~~-~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvif  190 (341)
T CHL00149        112 GSMHIFSA-PHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIF  190 (341)
T ss_pred             CCccccch-hcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEE
Confidence            34555554 46777899999999999999999998876       68999999999999999999999999999999999


Q ss_pred             EEEeCCCcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCC
Q psy14560         76 VCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPG  153 (355)
Q Consensus        76 Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~  153 (355)
                      ||+||+|+++++...+...++++++|  +|+++++|||+|+.+|++++++|++++|++++|+|||+.|+|+.||+.+|++
T Consensus       191 vv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~  270 (341)
T CHL00149        191 VVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPD  270 (341)
T ss_pred             EEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCc
Confidence            99999999998876666678899874  7999999999999999999999999999999999999999999999999887


Q ss_pred             ccee-----------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560        154 TSFR-----------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS  195 (355)
Q Consensus       154 ~~YR-----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~  195 (355)
                      . ||           |||.+|+++|+++|++++++++++.++....+.+..++
T Consensus       271 ~-YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~  322 (341)
T CHL00149        271 E-LRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQF  322 (341)
T ss_pred             c-CCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5 88           99999999999999999999998888876666554443

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=100.00  E-value=3.4e-36  Score=289.98  Aligned_cols=187  Identities=47%  Similarity=0.757  Sum_probs=171.7

Q ss_pred             ccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcc
Q psy14560          5 MIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGM   84 (355)
Q Consensus         5 ~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~   84 (355)
                      +|+..+ ..++.+++|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+|++|++++||+||||+||+|++
T Consensus        90 ~h~~~~-~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i  168 (293)
T cd02000          90 MHIGDK-EKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAI  168 (293)
T ss_pred             CCCCch-hcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeec
Confidence            454444 6889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----
Q psy14560         85 GTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----  157 (355)
Q Consensus        85 ~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-----  157 (355)
                      +++.....+.++++++|  +|+++++|||+|++++++++++|+++++++++|+|||+.|+|..||+++|++..||     
T Consensus       169 ~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~  248 (293)
T cd02000         169 STPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEV  248 (293)
T ss_pred             cCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHH
Confidence            98876666678898874  69999999999999999999999999999999999999999999999877777787     


Q ss_pred             ------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcc
Q psy14560        158 ------DPITSFKEKMLNSELATVDELKEACAVGMRAVMRE  192 (355)
Q Consensus       158 ------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~  192 (355)
                            |||.+|+++|++.|++++++++++.++....+.+.
T Consensus       249 ~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a  289 (293)
T cd02000         249 EEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEA  289 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence                  99999999999999999999999999887776654

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=100.00  E-value=9.4e-36  Score=299.51  Aligned_cols=190  Identities=38%  Similarity=0.684  Sum_probs=171.6

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcC-------CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEE
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKG-------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYV   76 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~-------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~V   76 (355)
                      .+|+..+ +.++++.+++||.++|.|+|+|+|.|+++       ++++|||++|||++++|.|||+||+|+.|+||+|||
T Consensus       179 smH~~~~-~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfV  257 (433)
T PLN02374        179 SMHMFSK-EHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV  257 (433)
T ss_pred             cCccCch-hhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEE
Confidence            4566544 67889999999999999999999999875       589999999999999999999999999999999999


Q ss_pred             EEeCCCcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc
Q psy14560         77 CENNGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT  154 (355)
Q Consensus        77 v~NN~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~  154 (355)
                      |+||+|+++++...+...++++++  ++|+++++|||+|+++|++++++|++++|++++|+|||+.|+|+.||+.+|++.
T Consensus       258 V~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~  337 (433)
T PLN02374        258 VENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE  337 (433)
T ss_pred             EeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccc
Confidence            999999998877766667889887  479999999999999999999999999999999999999999999999999875


Q ss_pred             cee-----------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560        155 SFR-----------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS  195 (355)
Q Consensus       155 ~YR-----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~  195 (355)
                       ||           |||.+|+++|+++|++++++++++.++....+.++.++
T Consensus       338 -YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~  388 (433)
T PLN02374        338 -LRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEF  388 (433)
T ss_pred             -cCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             87           99999999999999999999999888887766654443

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=1.1e-35  Score=291.97  Aligned_cols=186  Identities=30%  Similarity=0.483  Sum_probs=171.1

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE   89 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~   89 (355)
                      +...++++.+++||+++|.|+|+|+|.|+.+++++|||++|||++++|.++|+|++|++++||+||||+||+|+++++..
T Consensus       112 ~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~  191 (341)
T TIGR03181       112 PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRS  191 (341)
T ss_pred             chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----------
Q psy14560         90 RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----------  157 (355)
Q Consensus        90 ~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----------  157 (355)
                      .....+|++++|  +|+++++|||+|+.+|++++++|++++++.++|+|||+.|+|+.||+.+|++..||          
T Consensus       192 ~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~~  271 (341)
T TIGR03181       192 KQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRK  271 (341)
T ss_pred             hhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHhc
Confidence            666678998874  79999999999999999999999999999999999999999999999999877787          


Q ss_pred             -cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccc
Q psy14560        158 -DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDS  195 (355)
Q Consensus       158 -DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~  195 (355)
                       |||.+|+++|++.|++++++++++.++....+.++.++
T Consensus       272 ~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~  310 (341)
T TIGR03181       272 KDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE  310 (341)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999998888876666654444

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=5e-33  Score=299.52  Aligned_cols=218  Identities=24%  Similarity=0.275  Sum_probs=183.0

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCC------CeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEeCCCcceee
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTG------GVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCENNGYGMGTS   87 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~------~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~~~~~   87 (355)
                      ..+++|...|+|+|+|+|.|+.+.+      .++|+++||||+ ++|.|+|+||+|+.|++|   +||||+||+|+++|+
T Consensus       312 npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~  391 (924)
T PRK09404        312 NPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTS  391 (924)
T ss_pred             CccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeC
Confidence            3588999999999999999998877      799999999997 899999999999999998   999999999999999


Q ss_pred             ccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee--------
Q psy14560         88 AERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR--------  157 (355)
Q Consensus        88 ~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR--------  157 (355)
                      .....+..+++++|  +|+|+++|||+|+++|++|++.|++++|+++||+|||+.|||+.||+++|++. ||        
T Consensus       392 ~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~  470 (924)
T PRK09404        392 PPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKI  470 (924)
T ss_pred             HHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHH
Confidence            87776666777765  69999999999999999999999999999999999999999999999999875 54        


Q ss_pred             ----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc---------cccccccccc-----------cc----------
Q psy14560        158 ----DPITSFKEKMLNSELATVDELKEACAVGMRAVMR---------EQDSIISAYR-----------VH----------  203 (355)
Q Consensus       158 ----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~---------~~D~v~~~yR-----------~~----------  203 (355)
                          ||+.+|+++|++.|++++++++++.++....+.+         +.++.-..|-           +-          
T Consensus       471 ~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~  550 (924)
T PRK09404        471 KKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKEL  550 (924)
T ss_pred             HhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccccCCCCCHHHHHHH
Confidence                8999999999999999999998777665443322         1122111110           00          


Q ss_pred             ---cceeecCCCHHHHHHHHhcccccCCCCCCCCCc
Q psy14560        204 ---GWTYLMGVSVFGVLSELTGRRTGCAKGKGPISW  236 (355)
Q Consensus       204 ---~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w  236 (355)
                         -..++.++.+++.+.+++.++..+..++.++||
T Consensus       551 ~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw  586 (924)
T PRK09404        551 AEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDW  586 (924)
T ss_pred             HHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCH
Confidence               023467888888999988888777667778999

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=100.00  E-value=1.4e-32  Score=295.14  Aligned_cols=225  Identities=21%  Similarity=0.235  Sum_probs=184.5

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCC------CCeEEEEeCcccc-cccHHHHHHHHHHHcCCCE---EEEEEeCC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGT------GGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPC---IYVCENNG   81 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~------~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPv---i~Vv~NN~   81 (355)
                      ...+.++.++++...|+|+|.|+|.|+++.      +.++||++|||++ ++|.|+|+||+|+.+++|+   ||||+||+
T Consensus       307 ~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq  386 (929)
T TIGR00239       307 HLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ  386 (929)
T ss_pred             eeeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC
Confidence            445677889999999999999999998765      5789999999996 8999999999999999996   99999999


Q ss_pred             CcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee--
Q psy14560         82 YGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR--  157 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR--  157 (355)
                      |+++|+.....+.+.++++|  +|+|+++|||+|+++|++++++|++++|++++|+|||+.|||+.||+++|++..||  
T Consensus       387 yg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~  466 (929)
T TIGR00239       387 IGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPL  466 (929)
T ss_pred             EEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHH
Confidence            99999876666666777765  69999999999999999999999999999999999999999999999999887666  


Q ss_pred             ---------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccccccc------------ccccccc------------
Q psy14560        158 ---------DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSII------------SAYRVHG------------  204 (355)
Q Consensus       158 ---------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D~v~------------~~yR~~~------------  204 (355)
                               ||+.+|+++|++.|++++++++++.++....+.++.++.-            +.+.+..            
T Consensus       467 ~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~  546 (929)
T TIGR00239       467 MYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMK  546 (929)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHH
Confidence                     7999999999999999999998877766444433222210            0111111            


Q ss_pred             ---------ceeecCCCHHHHHHHHhccc-ccCCCCCCCCCc
Q psy14560        205 ---------WTYLMGVSVFGVLSELTGRR-TGCAKGKGPISW  236 (355)
Q Consensus       205 ---------~~~~~g~~~~~~~~~~~g~~-~g~~~~~~~~~w  236 (355)
                               ..++.|+.+++.+.+++..+ .....+++++||
T Consensus       547 ~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~  588 (929)
T TIGR00239       547 RLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDW  588 (929)
T ss_pred             HHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccH
Confidence                     01256777788888887766 444455677998

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>KOG1182|consensus

Probab=100.00  E-value=3.6e-33  Score=263.37  Aligned_cols=184  Identities=28%  Similarity=0.443  Sum_probs=168.2

Q ss_pred             cCCCCCccccCCcccccchHHHHHHHHHHHhcCCC-CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCccee
Q psy14560          8 INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGT   86 (355)
Q Consensus         8 ~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~-~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~   86 (355)
                      ++.+..++..-++++..++|.|+|+|.|.|+.+.+ +++||++|||+.++|.+|.+||+|+....|+||+|-||+|+|||
T Consensus       181 yGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AIST  260 (432)
T KOG1182|consen  181 YGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAIST  260 (432)
T ss_pred             cCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeecc
Confidence            34567788889999999999999999999977654 99999999999999999999999999999999999999999999


Q ss_pred             eccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-------
Q psy14560         87 SAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-------  157 (355)
Q Consensus        87 ~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-------  157 (355)
                      |...+....-++.+  |+|+..++|||+|..+||.|+++|.+.+....+|+|||+.|||..+||++|+.+.||       
T Consensus       261 ptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~  340 (432)
T KOG1182|consen  261 PTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQY  340 (432)
T ss_pred             ccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhh
Confidence            99988887777666  589999999999999999999999999999999999999999999999999999998       


Q ss_pred             -----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        158 -----DPITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       158 -----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                           .||.+|+.++..+|+|+++.-.++.......+|+
T Consensus       341 W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~  379 (432)
T KOG1182|consen  341 WNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLE  379 (432)
T ss_pred             hhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHH
Confidence                 7999999999999999998887777666555554

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=99.97  E-value=1.6e-31  Score=252.77  Aligned_cols=147  Identities=27%  Similarity=0.310  Sum_probs=135.0

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcC-----CCCeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEeCCCc
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG-----TGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCENNGYG   83 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~   83 (355)
                      ..+.++.+++|.++|+|+|+|+|.|+++     .+.++|+++|||++ ++|.|+|+||+|+.+++|   +||||+||+|+
T Consensus       106 ~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g  185 (265)
T cd02016         106 LSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG  185 (265)
T ss_pred             EEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence            4567788999999999999999999987     47899999999995 799999999999999999   99999999999


Q ss_pred             ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCcceecch
Q psy14560         84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRDPI  160 (355)
Q Consensus        84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YRDpI  160 (355)
                      ++|+...+.+.++++++|  +|+|+++|||+|+++|++++++|++++|++++|+|||+.|||+.||++.|++. |+.|+
T Consensus       186 ~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~p~-~t~p~  263 (265)
T cd02016         186 FTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPS-FTQPL  263 (265)
T ss_pred             EEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCCcc-ccCCC
Confidence            999988877777888875  69999999999999999999999999999999999999999999999999875 55543

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>KOG0225|consensus

Probab=99.93  E-value=1.3e-26  Score=220.62  Aligned_cols=79  Identities=57%  Similarity=0.947  Sum_probs=77.1

Q ss_pred             hhccccccccceeecccceecccCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHhhhhhccccccceeccCccccccc
Q psy14560        272 SISGRSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFL  350 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~~~~~~g~~h~~~g~~~~~~  350 (355)
                      .+.+|...+++++++.+|++|+||++|+.++++||||+|+|||+|++|||||++|++|||+|+||||||||+||||++|
T Consensus        24 ~~~~r~~~~~~~~~~~~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvav  102 (394)
T KOG0225|consen   24 LVNTRLVPSDVTFESSPFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAV  102 (394)
T ss_pred             hhccccCcccccccccceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHH
Confidence            7888999999999999999999999999999999999999999999999999999999999999999999999999986

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.88  E-value=7.4e-22  Score=208.99  Aligned_cols=220  Identities=25%  Similarity=0.262  Sum_probs=172.7

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCC------CCeEEEEeCccc-ccccHHHHHHHHHHHcCCC---EEEEEEeCCCcce
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGT------GGVCFALYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVCENNGYGMG   85 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~------~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~~~   85 (355)
                      ..+.++|...-|+.-|+..|.+..-.      ....|+++||++ .++|.++|+||+|..+++|   +|+||.||++|++
T Consensus       615 aaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGft  694 (1228)
T PRK12270        615 AANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFT  694 (1228)
T ss_pred             ecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccc
Confidence            34568999999999999999875321      456889999999 5999999999999999999   9999999999999


Q ss_pred             eeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc-----cee-
Q psy14560         86 TSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT-----SFR-  157 (355)
Q Consensus        86 ~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~-----~YR-  157 (355)
                      |......+.....+.  ++++|+++|||+|+++|.++.+.|+++.+++++|+|||+.|||..||++.|++.     +|+ 
T Consensus       695 T~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~  774 (1228)
T PRK12270        695 TAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDL  774 (1228)
T ss_pred             cCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhh
Confidence            876654443333333  568999999999999999999999999999999999999999999998887666     476 


Q ss_pred             ----c-chhHHHHHHHHhhhhhhhhHHHHHHhhHH-------Hhhc----cccccccccc--------------------
Q psy14560        158 ----D-PITSFKEKMLNSELATVDELKEACAVGMR-------AVMR----EQDSIISAYR--------------------  201 (355)
Q Consensus       158 ----D-pIr~fee~Li~~Gl~t~~e~qEa~qvg~~-------~al~----~~D~v~~~yR--------------------  201 (355)
                          . .-+.|.+.|+.+|.++.++.+++......       ++-+    +.+. .+..+                    
T Consensus       775 i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~-~~~~~~~~~~~~~~~Tav~~~~l~~  853 (1228)
T PRK12270        775 IDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEP-PESVESDQGPPAGVDTAVSAEVLER  853 (1228)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCccccccCCCCCCCCCCHHHHHH
Confidence                2 23678889999999999988766544321       1111    1111 11111                    


Q ss_pred             --cccceeecCCCHHHHHHHHhcccccCCCCCCCCCcc
Q psy14560        202 --VHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWE  237 (355)
Q Consensus       202 --~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~  237 (355)
                        +.-..++.|+.+|+.+..++.++..+.+ ++.|||-
T Consensus       854 i~da~~~~PegFt~Hpkl~~~l~~R~~m~~-~g~iDWa  890 (1228)
T PRK12270        854 IGDAHVNLPEGFTVHPKLKPLLEKRREMAR-EGGIDWA  890 (1228)
T ss_pred             HHHHhccCCCCCccChhhHHHHHHHHHHHh-cCCccHH
Confidence              1113346899999999999999988876 7889995

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=99.87  E-value=1.7e-21  Score=184.30  Aligned_cols=134  Identities=21%  Similarity=0.238  Sum_probs=117.7

Q ss_pred             ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccccC
Q psy14560         14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAERSS   92 (355)
Q Consensus        14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~~~   92 (355)
                      ++..++|+||+++|.|+|+|+|.++.++++.|+|++|||++++|.+||++++|++++|| +++|+.||+|+++.+.....
T Consensus        99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~  178 (255)
T cd02012          99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL  178 (255)
T ss_pred             CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence            66667899999999999999999999999999999999999999999999999999998 88888888899877655555


Q ss_pred             CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560         93 ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus        93 ~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                      ..+++.++  ++|+++++|||+|.+++.+++++|.+.   .++|++|++.|.+..|++..
T Consensus       179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~  235 (255)
T cd02012         179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM  235 (255)
T ss_pred             CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence            56788876  579999999999999999888877642   27899999999999999843

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=99.86  E-value=3e-21  Score=175.99  Aligned_cols=125  Identities=27%  Similarity=0.307  Sum_probs=105.8

Q ss_pred             ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCC
Q psy14560         14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSA   93 (355)
Q Consensus        14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~   93 (355)
                      ++..++|++|.++|+|+|+|+|.|+.+++++|+|++|||++++|.+||+|++|+.+++|+++||+||+|+++++...   
T Consensus        69 ~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~---  145 (195)
T cd02007          69 YDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT---  145 (195)
T ss_pred             CceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC---
Confidence            44567899999999999999999999989999999999999999999999999999999999999999998765441   


Q ss_pred             CccHhhhcCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560         94 STDYYTRGDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG  146 (355)
Q Consensus        94 ~~d~~~~A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G  146 (355)
                      ..+.. .++|+.... |||+|++++.+++++|.    +.++|++|++.|.+.+|
T Consensus       146 ~~~~~-~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g  194 (195)
T cd02007         146 PGNLF-EELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG  194 (195)
T ss_pred             HHHHH-HhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence            11222 257887774 99999999888877653    46799999999987665

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PRK12754 transketolase; Reviewed

Probab=99.84  E-value=3.6e-20  Score=195.69  Aligned_cols=133  Identities=21%  Similarity=0.224  Sum_probs=117.3

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|++|.+++.|+|+|+|.|+.+          -+..|+|++|||++++|.+||++++|+.++|| +|+||+||
T Consensus       106 ~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N  185 (663)
T PRK12754        106 TAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDN  185 (663)
T ss_pred             CCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcC
Confidence            35777889999999999999999999875          37889999999999999999999999999999 78999999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs  148 (355)
                      +++++++..... .+++.++  |+||++++ |||+|++++.+|+++|.+   ..++|++|++.|++.+|.+
T Consensus       186 ~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~  252 (663)
T PRK12754        186 GISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSP  252 (663)
T ss_pred             CCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcc
Confidence            999998887665 4788776  68999999 899999998888776653   2578999999999999876

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.84  E-value=2e-20  Score=195.72  Aligned_cols=129  Identities=24%  Similarity=0.271  Sum_probs=111.2

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc------
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER------   90 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~------   90 (355)
                      ...|+.|.++|+|+|+|+|.|+++.+..|||++|||++++|.+||+||+|+.+++|+|+||+||+|+++++...      
T Consensus       110 ~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~  189 (581)
T PRK12315        110 FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLK  189 (581)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhh
Confidence            36799999999999999999999999999999999999999999999999999999999999999999876531      


Q ss_pred             ---cCCCccHhh--hcCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         91 ---SSASTDYYT--RGDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        91 ---~~~~~d~~~--~A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                         .....++..  .++|++++.| ||+|+.++.+++++|    ++.++|++|++.|+|.+|+..
T Consensus       190 ~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~  250 (581)
T PRK12315        190 ELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQP  250 (581)
T ss_pred             hhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCCh
Confidence               111223333  3689999998 999999998888775    456899999999999999753

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=99.83  E-value=5.5e-20  Score=194.69  Aligned_cols=132  Identities=21%  Similarity=0.272  Sum_probs=115.3

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|++|.++|.|+|+|+|.|+.+          .+..|+|++|||++++|.+||++++|+.++|| +++||+||
T Consensus       102 ~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N  181 (653)
T TIGR00232       102 TAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSN  181 (653)
T ss_pred             CCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            35777889999999999999999999763          37789999999999999999999999999999 88889999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEeeeeCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSG-KGPLVLEVVTYRYSGHS  148 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~R~~GHs  148 (355)
                      +|+++++..... ..++.++  |+||++++| ||+|+.++.+|+++|    ++. ++|++|++.|++.+|.+
T Consensus       182 ~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~  248 (653)
T TIGR00232       182 RISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSP  248 (653)
T ss_pred             Ceeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCc
Confidence            999998877665 4677775  689999999 999999887776655    444 48999999999999986

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK12753 transketolase; Reviewed

Probab=99.83  E-value=6.7e-20  Score=194.19  Aligned_cols=134  Identities=22%  Similarity=0.232  Sum_probs=117.2

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|++|.+++.|+|+|+|.|+.+.          +..|+|++|||++++|.+||++++|+.++|| +|+||+||
T Consensus       106 ~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N  185 (663)
T PRK12753        106 TPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHN  185 (663)
T ss_pred             CCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            456777899999999999999999998642          6889999999999999999999999999998 88899999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      +++++.+..... ..++.++  ++||+++. |||+|+.++++|+++|.+   ..++|++|++.|.+.+|++.
T Consensus       186 ~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~  253 (663)
T PRK12753        186 GISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPN  253 (663)
T ss_pred             CCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCc
Confidence            999998877644 4677665  68999994 999999999999888764   25789999999999999874

>PRK05899 transketolase; Reviewed

Probab=99.83  E-value=6.9e-20  Score=193.31  Aligned_cols=140  Identities=22%  Similarity=0.237  Sum_probs=118.9

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||+++|.|+|+|+|.++.+.          +++|+|++|||++++|.+||+|++|+.++|| +++|++||+
T Consensus       111 ~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~  190 (624)
T PRK05899        111 PGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNR  190 (624)
T ss_pred             CCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            45666789999999999999999987766          8899999999999999999999999999999 788888999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR  157 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR  157 (355)
                      |+++.+... ...+++.++  ++|+++++|||+|++++.+++++|.+    .++|++|++.|.+.+||+..++...|+
T Consensus       191 ~~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H  263 (624)
T PRK05899        191 ISIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH  263 (624)
T ss_pred             Ccccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence            999876553 335788876  57999999999999999888887653    468999999999999998544433354

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=99.82  E-value=3.5e-20  Score=168.78  Aligned_cols=133  Identities=20%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...++.|+||+++|+|+|+++|    .|+++|||++|||++.+. .. +|.||+++++|+++||.||+ 
T Consensus        36 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~r~vv~i~GDG~f~m~-~~-eL~Ta~~~~lpvi~vV~NN~~  109 (196)
T cd02013          36 SYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMS-MM-EIMTAVRHKLPVTAVVFRNRQ  109 (196)
T ss_pred             HhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEECch
Confidence            567788887777777889999999999999988    579999999999998774 33 48999999999999998887 


Q ss_pred             Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |++.....          .....+||.++  |+|+++++|+  +++++.+++++|++.++ .++|+|||+.+.+.
T Consensus       110 yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~-~~~p~liev~v~~~  181 (196)
T cd02013         110 WGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMA-EGKTTVIEIVCDQE  181 (196)
T ss_pred             hHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCC-CCCeEEEEEEeCcc
Confidence            77643211          12235789887  4799999998  58888888888876443 47899999998643

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>PTZ00089 transketolase; Provisional

Probab=99.82  E-value=1.3e-19  Score=192.04  Aligned_cols=137  Identities=21%  Similarity=0.224  Sum_probs=117.8

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|++|.+++.|+|+|+|.|+.+.          +..|+|++|||++++|.+||++++|+.++|| +|+||+||+
T Consensus       109 ~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~  188 (661)
T PTZ00089        109 PGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNK  188 (661)
T ss_pred             CCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            45556789999999999999999998643          7889999999999999999999999999998 889999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceEEE-eCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGIWV-DGM-DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPG  153 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~  153 (355)
                      ++++.+..... ..++.++  ++||+++.| ||+ |+.++++|+++|.+.   .++|++|++.|.+.+||..+++.
T Consensus       189 ~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~  260 (661)
T PTZ00089        189 ITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTE  260 (661)
T ss_pred             cccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCC
Confidence            99988876543 4566665  689999999 999 999999998887643   26899999999999998766543

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=99.81  E-value=5.7e-20  Score=167.99  Aligned_cols=134  Identities=25%  Similarity=0.218  Sum_probs=106.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++.+|+.+...+++|+||+++|.|+|+++|    .|+++|||++|||++++..  .+|.||++++||+++||.||+ 
T Consensus        40 ~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~  113 (202)
T cd02006          40 QMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAY  113 (202)
T ss_pred             HhcCcCCCCeEEccCCccchhhhhHHHHhHHhh----CCCCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCch
Confidence            567788887777777889999999999999998    4799999999999986643  349999999999999999998 


Q ss_pred             Ccceeeccc--------------------cCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         82 YGMGTSAER--------------------SSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        82 ~~~~~~~~~--------------------~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      |++......                    ....+||++.|  +|+++.+|+  +++++.+++++|++.+++.++|+|||+
T Consensus       114 yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev  191 (202)
T cd02006         114 LGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEA  191 (202)
T ss_pred             HHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence            776332100                    00147898874  799999997  578888888888765444688999999


Q ss_pred             Eeeee
Q psy14560        140 VTYRY  144 (355)
Q Consensus       140 ~t~R~  144 (355)
                      .+.+.
T Consensus       192 ~i~~~  196 (202)
T cd02006         192 ILERV  196 (202)
T ss_pred             Eeccc
Confidence            98643

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=99.81  E-value=1.6e-19  Score=160.64  Aligned_cols=127  Identities=20%  Similarity=0.195  Sum_probs=101.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|++....++.|+||+++|+|+|++++    .|+++|||++|||++++.  .++|++|++++||+++||.||+ 
T Consensus        31 ~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~  104 (172)
T cd02004          31 YILRPRKPRHRLDAGTFGTLGVGLGYAIAAALA----RPDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGG  104 (172)
T ss_pred             HHccccCCCcEecCCCCCcccchHHHHHHHHHh----CCCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcc
Confidence            467778888877778889999999999999998    478999999999998764  3569999999999999988876 


Q ss_pred             Ccceeeccc-----------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSAER-----------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~~~-----------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++......           ....+||.++  |+|+++.+|+  +++++.+++++++    +.++|+|||+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i  171 (172)
T cd02004         105 WYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL----ASGKPALINVII  171 (172)
T ss_pred             cccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----HcCCCEEEEEEc
Confidence            887643221           1235788886  5799999998  4777766666654    458999999975

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>PLN02790 transketolase

Probab=99.81  E-value=3e-19  Score=189.16  Aligned_cols=134  Identities=23%  Similarity=0.308  Sum_probs=114.7

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHh-----cCC-----CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQY-----KGT-----GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~-----~~~-----~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|++|.++|.|+|+|+|.|+     .++     +..|+|++|||++++|.+||++++|+.++|| +|+||+||
T Consensus        97 ~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N  176 (654)
T PLN02790         97 TPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDN  176 (654)
T ss_pred             CCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            457778899999999999999999995     343     6889999999999999999999999999998 89999999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEEEeC--CCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIWVDG--MDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG--~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      +|+++++..... ..++.++  ++||+++.|||  +|++++.+|+++|.+.   .++|++|++.|++.+|.+.
T Consensus       177 ~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~  245 (654)
T PLN02790        177 HISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPN  245 (654)
T ss_pred             CccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCcc
Confidence            999998876543 4566665  68999999988  8999888887766532   6789999999999998763

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

Probab=99.80  E-value=3.7e-19  Score=162.44  Aligned_cols=130  Identities=23%  Similarity=0.281  Sum_probs=113.0

Q ss_pred             CCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeecc
Q psy14560         11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAE   89 (355)
Q Consensus        11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~   89 (355)
                      ...++..++|+||.++++|+|+|++.|+++.+..|++++|||.+.+|.+|||+.+|+.|+|. +|.||.-|+..++..+.
T Consensus       110 ~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~  189 (243)
T COG3959         110 KTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETE  189 (243)
T ss_pred             CCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchh
Confidence            34577788999999999999999999999999999999999999999999999999999998 89999989888877766


Q ss_pred             ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         90 RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        90 ~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ...+..++.++  |+||++++|||+|.+++.+|+.++..   ..++|.+|.+.|.+
T Consensus       190 ~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~rP~~IIa~Tvk  242 (243)
T COG3959         190 EIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKGRPTVIIAKTVK  242 (243)
T ss_pred             hccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCCCCeEEEEeccc
Confidence            66666777775  89999999999999998887776532   13489999998863

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.79  E-value=1.1e-18  Score=182.90  Aligned_cols=134  Identities=28%  Similarity=0.237  Sum_probs=112.7

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhc-CCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK-GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER   90 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~-~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~   90 (355)
                      ..++..++|++|.++|.|+|+|+|.|+. +++++|+|++|||++++|.+||+|++|+.+++|+++|++||+|+++.+...
T Consensus       109 ~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~  188 (580)
T PRK05444        109 SEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGA  188 (580)
T ss_pred             CCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchh
Confidence            3567778999999999999999999988 688999999999999999999999999999999999999999998766542


Q ss_pred             c---CCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         91 S---SASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        91 ~---~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      .   ....++.++  ++||+++ .|||+|++++.+++++|.    +.++|++|++.|.+.+|.+.
T Consensus       189 ~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~  249 (580)
T PRK05444        189 LSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAP  249 (580)
T ss_pred             hhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCCh
Confidence            2   112334443  6899999 589999999888776544    45799999999999998763

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=99.78  E-value=1.1e-19  Score=177.93  Aligned_cols=109  Identities=39%  Similarity=0.551  Sum_probs=98.3

Q ss_pred             cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccc-cccccccccccceeecCCCHHHHHHHHhccc
Q psy14560        155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQ-DSIISAYRVHGWTYLMGVSVFGVLSELTGRR  224 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~-D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~  224 (355)
                      +|+  ..+|+|+++++.   +    |++++..+||+.+++...+|+++ ||++|+||+|++.+++|+|+.++|++++|+.
T Consensus        32 ~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~  111 (358)
T COG1071          32 LYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKA  111 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHHHHHHHhccc
Confidence            466  567999998765   2    36788999999999999999966 9999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560        225 TGCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       225 ~g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      +|+||            |||||||+++  +||+|+++|||+|+|||+..-.+.
T Consensus       112 ~g~~k------------Gr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~  152 (358)
T COG1071         112 TGPCK------------GRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALAL  152 (358)
T ss_pred             cCCCC------------CCCCcccccccccccCCCCceecccccHHHHHHHHH
Confidence            99998            9999999986  699999999999999999875554

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=99.78  E-value=1.6e-18  Score=156.32  Aligned_cols=129  Identities=24%  Similarity=0.310  Sum_probs=98.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.....+++|+||+++|.|+|+++|    .|+++||+++|||++++. + .+|.||+++++|+++||.||+ 
T Consensus        33 ~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~  106 (186)
T cd02015          33 QYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA----RPDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGS  106 (186)
T ss_pred             HhcccCCCCeEEeCCCccchhchHHHHHHHHHh----CCCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCc
Confidence            456667776766667789999999999999988    478999999999998764 3 449999999999999999888 


Q ss_pred             Ccceeec----------c-ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------E-RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~-~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          . .....+||.+.  |+|+++.+|++  .+++.+++++    +++.++|+|||+.+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~----a~~~~~p~liev~~~~  175 (186)
T cd02015         107 LGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKE----ALASDGPVLLDVLVDP  175 (186)
T ss_pred             cHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHH----HHhCCCCEEEEEEeCC
Confidence            5543210          0 11134788886  47999999985  5566555554    4457899999999864

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=99.78  E-value=2e-18  Score=154.94  Aligned_cols=129  Identities=16%  Similarity=0.163  Sum_probs=101.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|++....+++|+||+++|.|+|+++|    .|+++||+++|||++.+..  ..|.||+++++|+++||.||+ 
T Consensus        31 ~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~  104 (177)
T cd02010          31 RYYRTYAPNTCLISNGLATMGVALPGAIGAKLV----YPDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNG  104 (177)
T ss_pred             HhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCc
Confidence            466777787777778899999999999999998    4789999999999986643  348999999999999988887 


Q ss_pred             Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         ......+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~  171 (177)
T cd02010         105 YGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERAL----AADGVHVIDCPVDY  171 (177)
T ss_pred             chHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence            7764211         111234688886  5799999997  5778877777765    46899999999864

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=99.77  E-value=6.6e-19  Score=153.68  Aligned_cols=127  Identities=30%  Similarity=0.373  Sum_probs=101.4

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++......++||+++|.|+|+++|    .|+++||+++|||++... . .+|.+|+++++|+++||.||+ 
T Consensus        11 ~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~-~el~ta~~~~~~v~~vv~nN~~   84 (153)
T PF02775_consen   11 QYLRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-L-QELATAVRYGLPVVIVVLNNGG   84 (153)
T ss_dssp             HHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-G-GGHHHHHHTTSSEEEEEEESSB
T ss_pred             HhcCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-c-chhHHHhhccceEEEEEEeCCc
Confidence            567788887777778899999999999999998    589999999999997654 2 338999999999999999998 


Q ss_pred             Ccceeec----------ccc---CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         82 YGMGTSA----------ERS---SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        82 ~~~~~~~----------~~~---~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      |++....          ...   ...+||.+.  ++|+++.+|+..|++++.+++++|+    +.++|+||||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV  153 (153)
T PF02775_consen   85 YGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV  153 (153)
T ss_dssp             SHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred             ceEeccccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence            6663221          111   445788886  5799999998777788888777766    5789999996

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=99.77  E-value=2.5e-18  Score=157.60  Aligned_cols=129  Identities=17%  Similarity=0.131  Sum_probs=101.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...++.|+||+++|+|+|+++|    .|+++||+++|||++.++.  .+|.||+++++|+++||.||+ 
T Consensus        31 ~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~  104 (205)
T cd02003          31 KLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHG  104 (205)
T ss_pred             HhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCc
Confidence            456777887777778899999999999999998    4789999999999987643  349999999999988888887 


Q ss_pred             Ccceeecc-----c------------------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeE
Q psy14560         82 YGMGTSAE-----R------------------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLV  136 (355)
Q Consensus        82 ~~~~~~~~-----~------------------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~l  136 (355)
                      |++.....     .                  ....+||.++  |+|+++.+|+  +++++.+++++|+    +.++|+|
T Consensus       105 ~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~l  178 (205)
T cd02003         105 FGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTV  178 (205)
T ss_pred             cHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEE
Confidence            77532110     0                  0124688887  4799999996  6888877777665    4689999


Q ss_pred             EEEEeee
Q psy14560        137 LEVVTYR  143 (355)
Q Consensus       137 Iev~t~R  143 (355)
                      ||+.+.+
T Consensus       179 IeV~v~~  185 (205)
T cd02003         179 IVIKTDP  185 (205)
T ss_pred             EEEEeec
Confidence            9999865

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=99.76  E-value=2.9e-18  Score=150.50  Aligned_cols=126  Identities=23%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG   83 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~   83 (355)
                      ++....|.......+.|+||+++|.|+|++++.    ++++|++++|||++.+  ..++|++|+++++|+++||.||++.
T Consensus        30 ~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~  103 (168)
T cd00568          30 YLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGY  103 (168)
T ss_pred             heeeCCCCcEEeCCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCcc
Confidence            344456666777888999999999999999984    5889999999999887  4588999999999999999999843


Q ss_pred             ceeecc-----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         84 MGTSAE-----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        84 ~~~~~~-----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      ..+...           .....+|+.++  ++|+++++|++  ++++.+++++    +++.++|+|||+.|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~----a~~~~~p~~i~v~~  168 (168)
T cd00568         104 GTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAE----ALAAGGPALIEVKT  168 (168)
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHH----HHhCCCCEEEEEEC
Confidence            322211           22235688876  47999999985  6666555555    44678999999875

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.76  E-value=4.9e-18  Score=151.52  Aligned_cols=126  Identities=25%  Similarity=0.280  Sum_probs=98.5

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.....++ |+||+++|+|+|+++|.    |+++|+|++|||+++++.  ++|.+|+++++|+++||.||+ 
T Consensus        33 ~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~  105 (178)
T cd02002          33 DQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRG  105 (178)
T ss_pred             HhcccCCCCCeeccCC-ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCcc
Confidence            4566667776666666 99999999999999984    689999999999988764  469999999999999999997 


Q ss_pred             Ccceeecc-----------------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSAE-----------------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~~-----------------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++.....                 .....+|+.++  ++|+++.+|++  ++++.+++++|+    +.++|+|||+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~vi~v~v  178 (178)
T cd02002         106 YGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREAL----AEGGPALIEVVV  178 (178)
T ss_pred             HHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence            88753211                 01124688886  47999999986  777777766665    468999999863

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=99.76  E-value=3e-18  Score=153.55  Aligned_cols=129  Identities=23%  Similarity=0.202  Sum_probs=101.4

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+++...++.|+||+++|+|+|+++|    .++++||+++|||++.++ +.| |.+++++++|+++||.||+ 
T Consensus        34 ~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a----~~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~  107 (178)
T cd02014          34 RHLRMNGKQRFILSGLLATMGNGLPGAIAAKLA----YPDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSD  107 (178)
T ss_pred             HhcccCCCCcEEcCCCCchhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCc
Confidence            567777887888788889999999999999988    478999999999998876 455 8999999999999999997 


Q ss_pred             Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         ......+||.++  |+|+++.+++  +++++.++++++    ++.++|+|||+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a----~~~~~p~liev~~~~  174 (178)
T cd02014         108 LGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEA----LAADGPVVIDVVTDP  174 (178)
T ss_pred             hhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeCC
Confidence            7764211         111234688886  5799999997  466665555554    456899999999864

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2

Probab=99.75  E-value=3.4e-18  Score=167.51  Aligned_cols=134  Identities=25%  Similarity=0.311  Sum_probs=104.9

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|+||.|++.|+|+|+|.|+.+          -+..|+|++|||.+++|.+|||+.+|+.++|. +|+|+.+|
T Consensus       103 ~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N  182 (332)
T PF00456_consen  103 TPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSN  182 (332)
T ss_dssp             STT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEE
T ss_pred             CceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecC
Confidence            44666689999999999999999988632          25789999999999999999999999999999 99999999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      +..+..+..... ..|+.++  |+||.+++| ||+|++++.+|+.+|.+   ..++|++|.+.|...+|.+.
T Consensus       183 ~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~  250 (332)
T PF00456_consen  183 GIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPF  250 (332)
T ss_dssp             SEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTT
T ss_pred             CcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchh
Confidence            988877665433 3566654  789999998 99999998888887643   24789999999998888753

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.75  E-value=7.9e-18  Score=177.32  Aligned_cols=130  Identities=29%  Similarity=0.310  Sum_probs=108.9

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccC----
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSS----   92 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~----   92 (355)
                      .++|++|.++|+|+|+|+|.|+++.+..|+|++|||++++|.+||+++.|+.++||+|+||+||+++++++.....    
T Consensus       108 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~  187 (617)
T TIGR00204       108 FSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLA  187 (617)
T ss_pred             cCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHH
Confidence            3679999999999999999999999999999999999999999999999999999999999999999987654110    


Q ss_pred             -------------------C-Cc---c-Hhhh----------------cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcC
Q psy14560         93 -------------------A-ST---D-YYTR----------------GDYIPGI-WVDGMDVLAVREASKFAVNYASSG  131 (355)
Q Consensus        93 -------------------~-~~---d-~~~~----------------A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~  131 (355)
                                         . .+   + +.++                ++||.++ .|||||+.++.++++.    +++.
T Consensus       188 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~----ak~~  263 (617)
T TIGR00204       188 QLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKN----AKKL  263 (617)
T ss_pred             HhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHH----HhcC
Confidence                               0 00   1 2121                4699888 8999999998888765    4456


Q ss_pred             CCCeEEEEEeeeeCCCCCC
Q psy14560        132 KGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus       132 ~gP~lIev~t~R~~GHs~~  150 (355)
                      ++|++|++.|.+.+|.+..
T Consensus       264 ~~P~~i~~~T~KGkG~~~~  282 (617)
T TIGR00204       264 KGPVFLHIQTKKGKGYKPA  282 (617)
T ss_pred             CCCEEEEEEecCCCCCchh
Confidence            7899999999999997653

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=99.74  E-value=1.8e-17  Score=149.41  Aligned_cols=130  Identities=20%  Similarity=0.106  Sum_probs=100.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|++....+.+|+||+++|.|+|+++|    .|+++||+++|||++.+. +.| |.||+++++|+++||.||+ 
T Consensus        33 ~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala----~~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~  106 (183)
T cd02005          33 LDLKLPKGTRFISQPLWGSIGYSVPAALGAALA----APDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDG  106 (183)
T ss_pred             hhccCCCCCEEEeccchhhHhhhHHHHHHHHHh----CCCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCC
Confidence            456667777777778889999999999999998    478999999999998663 566 8899999999888887776 


Q ss_pred             Ccceeeccc------cCCCccHhhhc--CC----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAER------SSASTDYYTRG--DY----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~~------~~~~~d~~~~A--~G----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++......      ....+||.+.|  +|    +++.+|+  ++.++.++++++++   ..++|+|||+.+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~  175 (183)
T cd02005         107 YTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK  175 (183)
T ss_pred             cEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence            776542211      11246888874  67    7888886  68888777777664   25799999999864

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.74  E-value=8e-18  Score=175.01  Aligned_cols=131  Identities=25%  Similarity=0.352  Sum_probs=106.0

Q ss_pred             CccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560          2 QQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG   81 (355)
Q Consensus         2 ~~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~   81 (355)
                      .+++++..|+++..++++|+||+++|+|||++++    .|+++|||+.|||++++. . ..|.||+++++|+++||.||+
T Consensus       390 a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla----~P~r~Vv~i~GDG~F~m~-~-qEL~Ta~r~~lpv~ivv~nN~  463 (550)
T COG0028         390 ARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLA----APDRKVVAIAGDGGFMMN-G-QELETAVRYGLPVKIVVLNNG  463 (550)
T ss_pred             HHhcccCCCCcEEcCCCCccccchHHHHHHHHhh----CCCCcEEEEEcccHHhcc-H-HHHHHHHHhCCCEEEEEEECC
Confidence            4688899999999999999999999999999998    589999999999998764 2 449999999999999999998


Q ss_pred             -Ccceeeccc----------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 -YGMGTSAER----------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 -~~~~~~~~~----------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                       |++......          .+.++.|.+.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+.
T Consensus       464 ~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~lidv~id~~  533 (550)
T COG0028         464 GYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPVLIDVVVDPE  533 (550)
T ss_pred             ccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence             777543211          1111228776  5799999998  6777777666655    578999999999754

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=99.73  E-value=1.3e-18  Score=172.12  Aligned_cols=109  Identities=40%  Similarity=0.635  Sum_probs=97.3

Q ss_pred             cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560        155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT  225 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~  225 (355)
                      +||  -.+|.|++++.+   +    |.++...+||++++|...+|+++||++++||+|++.+++|+++.++|+|++|+.+
T Consensus        35 ~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~  114 (362)
T PLN02269         35 FFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKD  114 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCC
Confidence            466  456899987654   3    3567789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560        226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      |+|+            |||||||+++  .||+|.++|||+|+|+|+.-..|.
T Consensus       115 g~~~------------GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~  154 (362)
T PLN02269        115 GCSR------------GKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQ  154 (362)
T ss_pred             CCCC------------CCCCcccccchhcCccccCchhhccccHHHHHHHHH
Confidence            9997            9999999986  799999999999999999764443

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E

Probab=99.72  E-value=1.1e-16  Score=158.18  Aligned_cols=132  Identities=20%  Similarity=0.101  Sum_probs=113.2

Q ss_pred             ccccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560         14 NFYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMG   85 (355)
Q Consensus        14 ~~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~   85 (355)
                      ++..++|++|.+++.|+|.|+|.|+       .+.+..|+|++|||.+++|.+||++.+|+.++|. +|+||.+|++++.
T Consensus       112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid  191 (386)
T cd02017         112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD  191 (386)
T ss_pred             CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence            4677889999999999999999997       4467889999999999999999999999999996 9999999999887


Q ss_pred             eecccc-CCCccHhhh--cCCcceEEEe----------------------------------------------------
Q psy14560         86 TSAERS-SASTDYYTR--GDYIPGIWVD----------------------------------------------------  110 (355)
Q Consensus        86 ~~~~~~-~~~~d~~~~--A~G~~~~~Vd----------------------------------------------------  110 (355)
                      .+.... ....++.++  |+||.+++||                                                    
T Consensus       192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~  271 (386)
T cd02017         192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK  271 (386)
T ss_pred             CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence            776653 234677775  7899999998                                                    


Q ss_pred             -----------------CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560        111 -----------------GMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus       111 -----------------G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs  148 (355)
                                       |+|..++.+|+.++.+   ..++|++|.+.|...+|.+
T Consensus       272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~  323 (386)
T cd02017         272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG  323 (386)
T ss_pred             HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence                             9999988888776543   2468999999999888876

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=99.71  E-value=1.9e-17  Score=173.75  Aligned_cols=133  Identities=26%  Similarity=0.220  Sum_probs=105.5

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....+++|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||++++||+++||.||+ 
T Consensus       401 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~pdr~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~iV~NN~~  474 (588)
T TIGR01504       401 QMLHVYKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVALSGDYDFQFMI--EELAVGAQHNIPYIHVLVNNAY  474 (588)
T ss_pred             HhccccCCCcEEeCCccccccchHhHHHhhhhh----CCCCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence            567778887777677889999999999999998    4899999999999987752  349999999999999999888 


Q ss_pred             Ccceeeccc----------cC----------CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         82 YGMGTSAER----------SS----------ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        82 ~~~~~~~~~----------~~----------~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      |++......          ..          .++||++.  |+|+++.+|+  +++++.+++++|++.+++.++|+|||+
T Consensus       475 yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV  552 (588)
T TIGR01504       475 LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEV  552 (588)
T ss_pred             hHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEE
Confidence            876421100          00          13789887  4799999997  588888888888765444689999999


Q ss_pred             Eeee
Q psy14560        140 VTYR  143 (355)
Q Consensus       140 ~t~R  143 (355)
                      .+.+
T Consensus       553 ~i~~  556 (588)
T TIGR01504       553 ILER  556 (588)
T ss_pred             Eecc
Confidence            9853

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=99.71  E-value=4.8e-17  Score=145.56  Aligned_cols=126  Identities=18%  Similarity=0.092  Sum_probs=96.8

Q ss_pred             ccccc-cCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560          3 QCMIV-INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG   81 (355)
Q Consensus         3 ~~~~~-~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~   81 (355)
                      ++++. ..|++.....+.+.||+++|.|+|+++|.     +++||+++|||++.+..  .+|.||+++++|+++||.||+
T Consensus        33 ~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~~--~eL~ta~~~~l~v~ivVlNN~  105 (175)
T cd02009          33 LFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHDL--NGLLLGKQEPLNLTIVVINNN  105 (175)
T ss_pred             HccCccCCCceEEecCCccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHhH--HHHHhccccCCCeEEEEEECC
Confidence            45666 67766666677799999999999999983     78899999999987642  348999999999999999887


Q ss_pred             -Ccceeeccc---------cC---CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 -YGMGTSAER---------SS---ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 -~~~~~~~~~---------~~---~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                       |++......         ..   ..+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+
T Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~v  174 (175)
T cd02009         106 GGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESAL----AQDGPHVIEVKT  174 (175)
T ss_pred             CCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence             775322110         11   24688886  4799999997  6778777777665    468999999976

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=99.70  E-value=8.8e-17  Score=168.05  Aligned_cols=134  Identities=22%  Similarity=0.206  Sum_probs=109.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|..+...+++|+||+++|.|+|+++|    .|+++||+++|||+++++...++|+||+++++|+++||+||+ 
T Consensus       413 ~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~  488 (569)
T PRK08327        413 RQARLNKPGSYFGDGSAGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGG  488 (569)
T ss_pred             HhcCccCCCCeeeCCCCCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcc
Confidence            567777887787777889999999999999987    589999999999998876544569999999999999999996 


Q ss_pred             Ccceeec-----------------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA-----------------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~-----------------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....                 .... +.+||+++  |+|+++.+|+  +++++.+++++|++.++++++|+|||+.+
T Consensus       489 yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v  566 (569)
T PRK08327        489 WLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV  566 (569)
T ss_pred             cccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            8764210                 1111 34688887  4799999997  78999999999998877778899999987


Q ss_pred             e
Q psy14560        142 Y  142 (355)
Q Consensus       142 ~  142 (355)
                      .
T Consensus       567 ~  567 (569)
T PRK08327        567 D  567 (569)
T ss_pred             c
Confidence            4

>PRK06154 hypothetical protein; Provisional

Probab=99.70  E-value=8e-17  Score=168.26  Aligned_cols=132  Identities=22%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|++....+++|+||+++|.|+|+++|    .|+++|||++|||++++..  ..|.||++++||+++||.||+ 
T Consensus       414 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la----~p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~  487 (565)
T PRK06154        414 PFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLA----RPDALVINLWGDAAFGMTG--MDFETAVRERIPILTILLNNFS  487 (565)
T ss_pred             HhCCCCCCCeEEccCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECCc
Confidence            467777887777777789999999999999998    4799999999999987753  349999999999999999998 


Q ss_pred             Ccceeeccc--------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAER--------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~~--------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++......        ....+||+++  |+|+++++|+  +++++.+++++|++.++ .++|+|||+.+.+
T Consensus       488 yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~  556 (565)
T PRK06154        488 MGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE  556 (565)
T ss_pred             cceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence            876432110        1114689887  4799999998  58888888888876432 4679999999854

>PRK07524 hypothetical protein; Provisional

Probab=99.70  E-value=8.3e-17  Score=166.89  Aligned_cols=132  Identities=21%  Similarity=0.181  Sum_probs=104.1

Q ss_pred             ccccccCCCCCcc-ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560          3 QCMIVINPSPKNF-YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~-~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~   81 (355)
                      ++++...|..... .++.|+||+++|.|+|+++|    .|+++|||++|||++++. +.| |.||++++||+++||.||+
T Consensus       389 ~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~  462 (535)
T PRK07524        389 LYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG----APERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNND  462 (535)
T ss_pred             HhcccCCCCceEeCCCCcccccchHHHHHHHHHh----CCCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECC
Confidence            4567777866655 67789999999999999998    489999999999998764 444 9999999999999999985


Q ss_pred             -Ccceee---------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560         82 -YGMGTS---------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG  146 (355)
Q Consensus        82 -~~~~~~---------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G  146 (355)
                       |++...         .......+||.+.  |+|+++.+|+  +++++.+++++++    +.++|+|||+.++|+.+
T Consensus       463 ~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~  533 (535)
T PRK07524        463 GYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA  533 (535)
T ss_pred             chHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence             875421         1112235788887  4799999997  6777777666655    46899999999998765

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=99.68  E-value=2.2e-16  Score=139.19  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=86.6

Q ss_pred             CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc-CCCEEEEEEeCC-CcceeeccccCCCcc
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-GIPCIYVCENNG-YGMGTSAERSSASTD   96 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~-~LPvi~Vv~NN~-~~~~~~~~~~~~~~d   96 (355)
                      +|+||+++|.|+|+++|.    + ++|||+.|||++.+..  .+|.|++++ ++|+++||.||+ |++..........+|
T Consensus        41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d  113 (157)
T cd02001          41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN  113 (157)
T ss_pred             ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence            899999999999999984    3 8899999999975432  238899999 599999998887 776432222223578


Q ss_pred             Hhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         97 YYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        97 ~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      |.+.  |+|+++++|+  +++++.++++++++    .++|+|||+.+.
T Consensus       114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~  155 (157)
T cd02001         114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA  155 (157)
T ss_pred             HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence            9887  4799999986  58888777777664    579999999874

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.68  E-value=1.5e-16  Score=166.29  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|..+...+++|+||+++|+|+|+++|    .|+++||+++|||++.+..  .+|.||++++||+++||.||+ 
T Consensus       404 ~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~eL~Ta~r~~l~v~ivV~NN~~  477 (574)
T PRK07979        404 LYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA----LPEETVVCVTGDGSIQMNI--QELSTALQYELPVLVLNLNNRY  477 (574)
T ss_pred             HhcccCCCCeEEeCCCccchhhHHHHHHHHHHh----CCCCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCch
Confidence            467777887777778889999999999999998    4789999999999987642  349999999999999999998 


Q ss_pred             Ccceeec---------c-ccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------E-RSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~-~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         . ... ..+||.+.  |+|+++++|+  +++++.+++++|++.++ .++|+|||+.+.+
T Consensus       478 yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~  549 (574)
T PRK07979        478 LGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG  549 (574)
T ss_pred             hhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence            7763211         0 111 34789887  4799999997  68888888888876433 3789999999864

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.68  E-value=1.6e-16  Score=166.87  Aligned_cols=129  Identities=19%  Similarity=0.233  Sum_probs=102.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++.+|+.+...+++|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||++++||+++||.||+ 
T Consensus       413 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~  486 (595)
T PRK09107        413 QFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA----HPDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQY  486 (595)
T ss_pred             HhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh----CCCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence            567778887777777889999999999999998    5899999999999987743  349999999999999999998 


Q ss_pred             Ccceeec---------ccc--CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ERS--SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~~--~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         ...  ...+||++.  |+|+++.+|+  +++++.+++++|++    .++|+|||+.+.+
T Consensus       487 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~  555 (595)
T PRK09107        487 MGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN  555 (595)
T ss_pred             cHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence            7763210         111  124789887  5799999996  57787777777653    5789999999864

>PRK11269 glyoxylate carboligase; Provisional

Probab=99.68  E-value=1.1e-16  Score=167.88  Aligned_cols=133  Identities=23%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....+++|+||+++|.|+|+++|    .|+++|||++|||++++.. . +|.||++++||+++||.||+ 
T Consensus       402 ~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~~-~-eL~Ta~~~~lpv~~vV~NN~~  475 (591)
T PRK11269        402 QFLHVYKPRHWINCGQAGPLGWTIPAALGVRAA----DPDRNVVALSGDYDFQFLI-E-ELAVGAQFNLPYIHVLVNNAY  475 (591)
T ss_pred             HhcccCCCCcEEeCCccccccchhhhHHhhhhh----CCCCcEEEEEccchhhcCH-H-HHHHHHHhCCCeEEEEEeCCc
Confidence            466777787777677889999999999999998    4789999999999987643 3 49999999999999999998 


Q ss_pred             Ccceeecc----------cc----------CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         82 YGMGTSAE----------RS----------SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        82 ~~~~~~~~----------~~----------~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      |++.....          ..          ..++||++.  ++|+++.+|+  +++++.+++++|++.+.+.++|+|||+
T Consensus       476 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV  553 (591)
T PRK11269        476 LGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEV  553 (591)
T ss_pred             hhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEE
Confidence            77532110          00          023689887  4799999996  688888888888765545689999999


Q ss_pred             Eeee
Q psy14560        140 VTYR  143 (355)
Q Consensus       140 ~t~R  143 (355)
                      .+.+
T Consensus       554 ~v~~  557 (591)
T PRK11269        554 ILER  557 (591)
T ss_pred             Eecc
Confidence            9864

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=99.67  E-value=1.1e-16  Score=167.87  Aligned_cols=134  Identities=19%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....+++|+||+++|.|+|+++|    .|+++||+++|||++.+. ..| |.||+++++|+++||.||+ 
T Consensus       418 ~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la----~p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~  491 (588)
T PRK07525        418 SYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA----CPDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQ  491 (588)
T ss_pred             HhcccCCCCeEEccccccccccHHHHHHHHHHh----CCCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCch
Confidence            567788888877777889999999999999998    578999999999998775 344 8899999999999998886 


Q ss_pred             Ccceeec----------cccC-CCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS  145 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~  145 (355)
                      |++....          .... ..+||.++|  +|+++++|+  +++++.++++++++.. +.++|+|||+.+.+..
T Consensus       492 y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~  565 (588)
T PRK07525        492 WGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL  565 (588)
T ss_pred             hHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence            7753211          0111 236888874  799999997  6788888888887643 2368999999997544

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.67  E-value=3.8e-16  Score=165.17  Aligned_cols=126  Identities=21%  Similarity=0.239  Sum_probs=102.8

Q ss_pred             cccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc-------ccC
Q psy14560         20 GIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE-------RSS   92 (355)
Q Consensus        20 g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~-------~~~   92 (355)
                      ++-+++++.|+|+|+|.++.++++.|+|++|||++++|.+||++++|+.+++|+++|++||+++++.+..       ...
T Consensus       119 g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~  198 (641)
T PRK12571        119 AHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLR  198 (641)
T ss_pred             CCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHh
Confidence            4346678899999999999999999999999999999999999999999999999999999999877653       111


Q ss_pred             CCccH------------------------------------hh-hcCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCC
Q psy14560         93 ASTDY------------------------------------YT-RGDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGP  134 (355)
Q Consensus        93 ~~~d~------------------------------------~~-~A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP  134 (355)
                      ....+                                    .+ .++||.++ .|||||..++.+|+++|.+.   .++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P  275 (641)
T PRK12571        199 SSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGP  275 (641)
T ss_pred             cCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCC
Confidence            11111                                    11 26799999 79999999888887765421   4789


Q ss_pred             eEEEEEeeeeCCCC
Q psy14560        135 LVLEVVTYRYSGHS  148 (355)
Q Consensus       135 ~lIev~t~R~~GHs  148 (355)
                      ++|++.|...+|.+
T Consensus       276 ~~I~~~T~kGkG~~  289 (641)
T PRK12571        276 VLVHVVTEKGRGYA  289 (641)
T ss_pred             EEEEEEecCccCcc
Confidence            99999999888876

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.67  E-value=1.6e-16  Score=166.65  Aligned_cols=130  Identities=19%  Similarity=0.216  Sum_probs=103.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|    .|+++||+++|||++++..  ..|.||+++++|+++||.||+ 
T Consensus       420 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~Vv~i~GDGsf~m~~--~eL~Ta~r~~lpviivV~NN~~  493 (587)
T PRK06965        420 QFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA----HPDDDVVCITGEGSIQMCI--QELSTCLQYDTPVKIISLNNRY  493 (587)
T ss_pred             HhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEEEEcchhhhcCH--HHHHHHHHcCCCeEEEEEECCc
Confidence            567777887888788889999999999999998    4789999999999987753  349999999999999999998 


Q ss_pred             Ccceeec---------cc-cC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ER-SS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~-~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         .. .. ..+||++.  |+|+++++|+  +..++.+++++|++.   .++|+|||+.+.+
T Consensus       494 ~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~  563 (587)
T PRK06965        494 LGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP  563 (587)
T ss_pred             chHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence            6653211         01 11 34789887  4799999997  577888888877652   3689999999863

>KOG0450|consensus

Probab=99.67  E-value=1.8e-16  Score=162.68  Aligned_cols=219  Identities=20%  Similarity=0.244  Sum_probs=171.3

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcC-----CCCeEEEEeCccc-ccccHHHHHHHHHHHcCCC------EEEEEEeCCCc
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKG-----TGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIP------CIYVCENNGYG   83 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~-----~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LP------vi~Vv~NN~~~   83 (355)
                      ..+.++|...-|+.+|-..|.++..     .+...|.++||++ .++|.++|+|.+   ..||      .|+||.||+.|
T Consensus       370 VANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hl---s~LP~YtT~GTvHvVvNNQIg  446 (1017)
T KOG0450|consen  370 VANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHL---SDLPSYTTGGTVHVVVNNQIG  446 (1017)
T ss_pred             ecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeecc---ccCCCcccCCeEEEEEccccc
Confidence            4567999999999999999988764     3467899999999 589999999987   4566      99999999999


Q ss_pred             ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc-----ce
Q psy14560         84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT-----SF  156 (355)
Q Consensus        84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~-----~Y  156 (355)
                      ++|......+.|...+.|  .++|.++|+++|+++|.-+.+-|.++...++..++|++.+||..||++-|.+.     +|
T Consensus       447 FTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMY  526 (1017)
T KOG0450|consen  447 FTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMY  526 (1017)
T ss_pred             cccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCccccchHHH
Confidence            988766555555555544  59999999999999999999999999999999999999999999999988665     56


Q ss_pred             e------cchhHHHHHHHHhhhhhhhhHHHHHHhh---HHHhhc-ccccccccccccccee-------------------
Q psy14560        157 R------DPITSFKEKMLNSELATVDELKEACAVG---MRAVMR-EQDSIISAYRVHGWTY-------------------  207 (355)
Q Consensus       157 R------DpIr~fee~Li~~Gl~t~~e~qEa~qvg---~~~al~-~~D~v~~~yR~~~~~~-------------------  207 (355)
                      +      ..+..|.++|+..|.+++.+++|.....   ...+.. +.|+....+|++--.-                   
T Consensus       527 k~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~T  606 (1017)
T KOG0450|consen  527 KQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPST  606 (1017)
T ss_pred             HHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCC
Confidence            5      4578999999999999999997665443   333332 3455544445433111                   


Q ss_pred             -----------------ecCCCHHHHHHHHhcccccCCCCCCCCCccc
Q psy14560        208 -----------------LMGVSVFGVLSELTGRRTGCAKGKGPISWEC  238 (355)
Q Consensus       208 -----------------~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~  238 (355)
                                       +.|+.++.-+.+++..+..+-+. .-+||-+
T Consensus       607 gv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal  653 (1017)
T KOG0450|consen  607 GVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWAL  653 (1017)
T ss_pred             CCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHH
Confidence                             35666777777877777666554 5689975

>PRK05858 hypothetical protein; Provisional

Probab=99.67  E-value=2e-16  Score=164.35  Aligned_cols=129  Identities=19%  Similarity=0.140  Sum_probs=102.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...++.|+||+++|.|+|+++|    .|+++||+++|||++++. +. .|.||++++||+++||+||+ 
T Consensus       390 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la----~p~r~vv~i~GDG~f~~~-~~-eL~Ta~~~~lpi~ivV~NN~~  463 (542)
T PRK05858        390 RYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFS-LM-DVDTLVRHNLPVVSVIGNNGI  463 (542)
T ss_pred             HHccccCCCCEEeCCCccccccchhHHHHHHHh----CCCCcEEEEEcCchhcCc-HH-HHHHHHHcCCCEEEEEEeCCc
Confidence            467777887776667789999999999999998    489999999999998764 33 49999999999999999987 


Q ss_pred             Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++.....          ...+.+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       464 y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~~~~  531 (542)
T PRK05858        464 WGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAF----ASGVPYLVNVLTDP  531 (542)
T ss_pred             hhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEECC
Confidence            77632110          11145799887  4799999997  5778877777765    46899999999964

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=99.67  E-value=2.6e-16  Score=167.09  Aligned_cols=221  Identities=22%  Similarity=0.229  Sum_probs=171.3

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCC-----CCeEEEEeCccc-ccccHHHHHHHHHHHcCC---CEEEEEEeCCCccee
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGT-----GGVCFALYGDGA-SNQGQNFEAYNIAKLWGI---PCIYVCENNGYGMGT   86 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~-----~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~L---Pvi~Vv~NN~~~~~~   86 (355)
                      ..+.++|....|+..|.+.|.+....     ....+.++||.+ .++|.+.|+||+....+.   +.+++|.||+.|.+|
T Consensus       294 a~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT  373 (906)
T COG0567         294 AFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT  373 (906)
T ss_pred             cCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC
Confidence            34669999999999999999886533     245679999999 599999999999766555   399999999999988


Q ss_pred             eccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCc-----cee--
Q psy14560         87 SAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGT-----SFR--  157 (355)
Q Consensus        87 ~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~-----~YR--  157 (355)
                      ......+.+...+.|  .++|+++|+|.||+++..+.+-|+++...++++++|++.+||..||++.|.+.     +|.  
T Consensus       374 sp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I  453 (906)
T COG0567         374 SPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKI  453 (906)
T ss_pred             CcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHH
Confidence            744444444444444  48999999999999999999999999999999999999999999999998776     454  


Q ss_pred             ----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhccc----------cc---ccccccccc----------------
Q psy14560        158 ----DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQ----------DS---IISAYRVHG----------------  204 (355)
Q Consensus       158 ----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~----------D~---v~~~yR~~~----------------  204 (355)
                          .+...|.++|++.|.++.++.+++...... .++..          ||   ..+.|+.+.                
T Consensus       454 ~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L  532 (906)
T COG0567         454 KKHPTVRKLYADKLIAEGVISEEEADELVNDYRD-ALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKKTLKEL  532 (906)
T ss_pred             hcCCChhhhHHHHHHhhccccHHHHHHHHHHHHH-HhhhhhhHHhHHHhhhccccccccccCCcccccccccCHHHHHHH
Confidence                455789999999999988888766655421 12111          11   123333333                


Q ss_pred             ----ceeecCCCHHHHHHHHhcccccCCCCCCCCCcc
Q psy14560        205 ----WTYLMGVSVFGVLSELTGRRTGCAKGKGPISWE  237 (355)
Q Consensus       205 ----~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~  237 (355)
                          -.++.|+.+++.+.+++.++.....++.++||-
T Consensus       533 ~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~  569 (906)
T COG0567         533 GKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWG  569 (906)
T ss_pred             HHHhhcCCcceehhHHHHHHHHHHHHHhccccccchh
Confidence                112578889999999998888877778899995

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=99.67  E-value=3.2e-17  Score=161.41  Aligned_cols=108  Identities=29%  Similarity=0.498  Sum_probs=97.6

Q ss_pred             cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560        155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT  225 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~  225 (355)
                      .||  -.+|.|++++.+   +    |.++...+||+++++...+|+++||++|+||+|++.+++|+++..+|+|++|+.+
T Consensus        25 ~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~  104 (341)
T CHL00149         25 LYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKET  104 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCC
Confidence            466  556999997665   3    4567889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560        226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                      |+++            |||||||+++  .+++++++++|.|+|.|+.-.++
T Consensus       105 g~~~------------Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A  143 (341)
T CHL00149        105 GCSR------------GRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQ  143 (341)
T ss_pred             CCCC------------CCCCCccccchhcCccCCChhhhccHHHHHHHHHH
Confidence            9997            9999999986  79999999999999999988655

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.67  E-value=2.4e-16  Score=164.83  Aligned_cols=129  Identities=20%  Similarity=0.234  Sum_probs=101.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|+++|    .|+++||+++|||++++. +.| |.||++++||+++||.||+ 
T Consensus       405 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~  478 (570)
T PRK06725        405 HFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKF  478 (570)
T ss_pred             HhccccCCCeEEccCCcccccchhhHHHhhHhh----cCCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCc
Confidence            356677787777777889999999999999998    578999999999998654 444 9999999999999999998 


Q ss_pred             Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          ......+||+++  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       479 ~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~~p~liev~id~  546 (570)
T PRK06725        479 LGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAF----AHEGPVVVDFCVEE  546 (570)
T ss_pred             cHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            6653211          012235788887  5799999996  6777766666554    46899999999864

>PRK12474 hypothetical protein; Provisional

Probab=99.67  E-value=2.6e-16  Score=162.68  Aligned_cols=126  Identities=16%  Similarity=0.169  Sum_probs=96.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.+...+ .|+||+++|.|+|+++|    .|+++|||++|||++++..  ..|.||++++||+++||.||+ 
T Consensus       373 ~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA----~p~r~vv~i~GDG~f~m~~--qEL~Ta~r~~lpv~iiV~NN~~  445 (518)
T PRK12474        373 MSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVA----APDRKVVCPQGDGGAAYTM--QALWTMARENLDVTVVIFANRS  445 (518)
T ss_pred             HhhcccCCCCEEccC-CCccCccHHHHHHHHHH----CCCCcEEEEEcCchhcchH--HHHHHHHHHCCCcEEEEEcCCc
Confidence            456667776555443 49999999999999998    4899999999999987643  349999999999999999998 


Q ss_pred             Ccceeec---------c------cc--CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA---------E------RS--SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~---------~------~~--~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....         .      ..  .+++||.++  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+
T Consensus       446 y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~----~~~~p~liev~~  518 (518)
T PRK12474        446 YAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAM----AQRGPRLIEAMI  518 (518)
T ss_pred             chHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence            8764311         0      00  113588887  5799999997  4777777777765    468999999863

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=99.67  E-value=3.2e-16  Score=162.68  Aligned_cols=130  Identities=15%  Similarity=0.163  Sum_probs=102.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.....++.|+||+++|.|+|+++|    .|+++||+++|||++++. . .+|.||++++||+++||.||+ 
T Consensus       391 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~~~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpi~ivV~NN~~  464 (539)
T TIGR02418       391 RYFRSYRARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFS-S-MELETAVRLKLNIVHIIWNDNG  464 (539)
T ss_pred             HhcccCCCCceecCCCccccccHHHHHHHHHHh----CCCCcEEEEEcchhhhch-H-HHHHHHHHhCCCeEEEEEECCc
Confidence            456677787777777889999999999999998    478999999999998774 2 349999999999999999887 


Q ss_pred             Ccceeec-----c----ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTSA-----E----RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~~-----~----~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |++....     .    .....+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+.
T Consensus       465 y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~v~~~  532 (539)
T TIGR02418       465 YNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAM----EVEGPVVVDIPVDYS  532 (539)
T ss_pred             chHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence            7763211     1    11235788887  4799999997  5777777777665    467899999998643

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=99.67  E-value=3.3e-17  Score=159.72  Aligned_cols=109  Identities=45%  Similarity=0.686  Sum_probs=97.6

Q ss_pred             cee--cchhHHHHHHHH---hh----hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560        155 SFR--DPITSFKEKMLN---SE----LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT  225 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~G----l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~  225 (355)
                      .||  -.+|.|++++.+   +|    .++...+||+.+++.+.+|+++||++|+||+|++.+++|+++.++|++++|+.+
T Consensus         7 ~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~   86 (315)
T TIGR03182         7 LYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRAT   86 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCC
Confidence            466  456899998664   44    355789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560        226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      |+|+            |||||||+.+  .|+++.++++|.|+|.|+.-..+.
T Consensus        87 g~~~------------Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~  126 (315)
T TIGR03182        87 GCSK------------GKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFAN  126 (315)
T ss_pred             CCCC------------CCCCCCCcCchhhCcccCcCcccccccHHHHHHHHH
Confidence            9997            9999999986  799999999999999999886655

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=99.67  E-value=7.1e-16  Score=138.73  Aligned_cols=113  Identities=21%  Similarity=0.193  Sum_probs=85.8

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCC-CcceeeccccC-CC
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNG-YGMGTSAERSS-AS   94 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~-~~~~~~~~~~~-~~   94 (355)
                      .+|+||+++|.|+|+++|.    + ++|||++|||++.+..  .+|.+++++++ |+++||.||+ |++........ ..
T Consensus        40 ~~g~mG~~lp~AiGaala~----~-~~vv~i~GDG~f~m~~--~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~  112 (179)
T cd03372          40 MLGSMGLASSIGLGLALAQ----P-RKVIVIDGDGSLLMNL--GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKK  112 (179)
T ss_pred             cccchhhHHHHHHHHHhcC----C-CcEEEEECCcHHHhCH--HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCC
Confidence            3899999999999999984    4 7899999999985432  34888999995 6877776665 88754322112 25


Q ss_pred             ccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         95 TDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        95 ~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      +||.++  ++|+++.+|++ +++++.+++++++      ++|+|||+.+.+.
T Consensus       113 ~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~  157 (179)
T cd03372         113 TDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPG  157 (179)
T ss_pred             CCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCC
Confidence            788887  47999999986 6777766666654      6899999999643

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=99.67  E-value=3.7e-16  Score=163.55  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=102.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...++.|+||+++|.|+|+++|    .|+++||+++|||++++. . .+|.|++++++|+++||.||+ 
T Consensus       391 ~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~-~-~eL~Tavr~~lpi~~VV~NN~~  464 (575)
T TIGR02720       391 RHLKMTPKNKWITSNLFATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMT-M-QDLLTQVQYHLPVINIVFSNCT  464 (575)
T ss_pred             HhCCcCCCCeEEcCCCcchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhh-H-HHHHHHHHhCCCeEEEEEeCCc
Confidence            567777787777677789999999999999998    579999999999998774 3 349999999999999988887 


Q ss_pred             Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      |++....         ......+||+++  |+|+++.+|+  +.+++.++++++++ . +.++|+|||+.+.
T Consensus       465 yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~  532 (575)
T TIGR02720       465 YGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKIT  532 (575)
T ss_pred             cHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeC
Confidence            8863211         111235788887  4799999997  57788888887765 2 4688999999985

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=99.66  E-value=3.6e-16  Score=163.69  Aligned_cols=132  Identities=22%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|+++|    .|+++|||++|||++++..  .+|.||++++||+++||.||+ 
T Consensus       413 ~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~  486 (579)
T TIGR03457       413 SYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA----APDRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQ  486 (579)
T ss_pred             HhcCcCCCCeEEcCCccccccchHHHHHhhhhh----CCCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcc
Confidence            577888887777777889999999999999998    5789999999999987753  349999999999999999887 


Q ss_pred             Ccceeec----------cccCCC-ccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSSAS-TDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~~~-~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          ...... +||.+.  |+|+++++|+  +++++.+++++|++.. +.++|+|||+.+.+
T Consensus       487 yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~  558 (579)
T TIGR03457       487 WGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR  558 (579)
T ss_pred             hHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence            7763211          011222 589887  4799999997  6888988888887643 35789999999964

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=99.66  E-value=5.5e-16  Score=162.11  Aligned_cols=129  Identities=21%  Similarity=0.187  Sum_probs=100.8

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++....|+.+...++.|+||+++|.|+|+++|    .|+++||+++||||+++. .. +|.||++++||+++||.||+ 
T Consensus       391 ~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la----~p~r~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~  464 (574)
T PRK09124        391 RYLKMNGKRRLLGSFNHGSMANAMPQALGAQAA----HPGRQVVALSGDGGFSML-MG-DFLSLVQLKLPVKIVVFNNSV  464 (574)
T ss_pred             HhcccCCCCeEEecCCcccccchHHHHHHHHHh----CCCCeEEEEecCcHHhcc-HH-HHHHHHHhCCCeEEEEEeCCc
Confidence            455666776666667889999999999999998    478999999999998664 23 39999999999999999887 


Q ss_pred             Ccceee---------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTS---------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~---------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++...         .......+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       465 ~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~i~~  531 (574)
T PRK09124        465 LGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAF----AHDGPALVDVVTAK  531 (574)
T ss_pred             cccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            776421         0111234689887  4799999997  5778877777765    45789999999864

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.66  E-value=4e-16  Score=163.17  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=102.1

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++.+|+.+...+++|+||+++|+|+|+++|    .|+++||+++|||++.+..  ..|.||++++||+++||.||+ 
T Consensus       404 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpv~~vV~NN~~  477 (572)
T PRK08979        404 LYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA----MPDETVVCVTGDGSIQMNI--QELSTALQYDIPVKIINLNNRF  477 (572)
T ss_pred             HhcCcCCCCeEEccCCcccccchhhHHHhhhhh----CCCCeEEEEEcchHhhccH--HHHHHHHHcCCCeEEEEEeCCc
Confidence            466777887777777889999999999999998    4789999999999987752  349999999999999999888 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ..+||++.  |+|+++.+|+  +++++.+++++|++.   .++|+|||+.+.+
T Consensus       478 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~  547 (572)
T PRK08979        478 LGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE  547 (572)
T ss_pred             cHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence            7764311          0111 24789887  4799999997  577887777776641   3789999999864

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=99.66  E-value=8.8e-16  Score=139.25  Aligned_cols=115  Identities=20%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCC-CcceeeccccCCCcc
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNG-YGMGTSAERSSASTD   96 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~-~~~~~~~~~~~~~~d   96 (355)
                      +|+||+++|.|+|+++|    .|+++|||++|||++.+.  .++|.+++++++ |+++||.||+ |++..........+|
T Consensus        47 ~g~mG~~lpaAiGaala----~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d  120 (188)
T cd03371          47 VGSMGHASQIALGIALA----RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS  120 (188)
T ss_pred             cCccccHHHHHHHHHHh----CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence            49999999999999998    478999999999997653  245999999997 6888888887 766422111223478


Q ss_pred             Hhhhc--CCcce-EEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560         97 YYTRG--DYIPG-IWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS  145 (355)
Q Consensus        97 ~~~~A--~G~~~-~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~  145 (355)
                      |.+.|  +|+++ .+|+  ++.++.+++++|+    +.++|+|||+.+.+..
T Consensus       121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~~~~~~  166 (188)
T cd03371         121 LPAIAKACGYRAVYEVP--SLEELVAALAKAL----AADGPAFIEVKVRPGS  166 (188)
T ss_pred             HHHHHHHcCCceEEecC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCC
Confidence            88874  79987 5786  6888877777765    4578999999997544

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.66  E-value=5.1e-16  Score=162.37  Aligned_cols=130  Identities=18%  Similarity=0.237  Sum_probs=102.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|    .|+++||+++|||++++..  ..|.||++++||+++||.||+ 
T Consensus       406 ~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~~--~eL~Ta~r~~lpv~ivV~NN~~  479 (574)
T PRK06466        406 QYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA----FPDQDVACVTGEGSIQMNI--QELSTCLQYGLPVKIINLNNGA  479 (574)
T ss_pred             HhccccCCCcEEcCCCcchhhchHHHHHHHHHh----CCCCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence            567777887777778889999999999999998    4799999999999987642  349999999999999999887 


Q ss_pred             Ccceeec---------c-cc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------E-RS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~-~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         . .. ...+||.+.  |+|+++.+|+  +++++.+++++|++.   .++|+|||+.+.+
T Consensus       480 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~  549 (574)
T PRK06466        480 LGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR  549 (574)
T ss_pred             cHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence            7763211         0 11 124788887  4799999997  577887777776642   2789999999864

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=99.66  E-value=9e-16  Score=137.62  Aligned_cols=116  Identities=20%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-----
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER-----   90 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~-----   90 (355)
                      .++|+||+++|.|+|+++|.    |+++||+++|||++.+.. .++|.+|+++++|+++||.||+ |++......     
T Consensus        48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~  122 (178)
T cd02008          48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK  122 (178)
T ss_pred             cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence            46899999999999999984    689999999999986532 4669999999999999998887 665332111     


Q ss_pred             ----cCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         91 ----SSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        91 ----~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                          ....+||.++  ++|+++++| +..|..++.+++++|+    +.++|+||++..
T Consensus       123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~----~~~gp~lI~v~~  176 (178)
T cd02008         123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEAL----AVPGVSVIIAKR  176 (178)
T ss_pred             cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence                1123688886  479999999 5566655556666655    468999999864

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.66  E-value=1.1e-15  Score=160.54  Aligned_cols=137  Identities=22%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcce------e
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG------T   86 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~------~   86 (355)
                      .+...++|++|.+|++|+|+|+|.++++.+..|+|++|||++++|..||||+.|+..+-++|+|++||+..+.      .
T Consensus       170 ~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g  249 (641)
T PLN02234        170 EHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDG  249 (641)
T ss_pred             CCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCC
Confidence            3555678999999999999999999999999999999999999999999999999777779999999987321      1


Q ss_pred             eccccCC----------C-----ccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560         87 SAERSSA----------S-----TDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus        87 ~~~~~~~----------~-----~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs  148 (355)
                      +......          .     .+...+  ++||.++ .|||||.+++.++++++.+  ....+|++|.+.|.+.+|.+
T Consensus       250 ~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~--~~~~~P~vI~~~T~KGkGv~  327 (641)
T PLN02234        250 PTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKS--TKTIGPVLIHVVTEKGRGYP  327 (641)
T ss_pred             CCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHh--cCCCCCEEEEEEEecCCCcc
Confidence            1111000          0     122222  6799999 9999999999888876532  12358999999999999887


Q ss_pred             CCC
Q psy14560        149 MSD  151 (355)
Q Consensus       149 ~~D  151 (355)
                      ..+
T Consensus       328 ~~E  330 (641)
T PLN02234        328 YAE  330 (641)
T ss_pred             hhh
Confidence            543

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=99.66  E-value=4e-16  Score=162.05  Aligned_cols=128  Identities=14%  Similarity=0.034  Sum_probs=99.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....++.|+||+++|.|+|+++|    .|+++|||++|||++++..  .+|.||+++++|+++||+||+ 
T Consensus       387 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~~--~EL~Ta~~~~lpi~~vV~NN~~  460 (539)
T TIGR03393       387 ADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA----CPNRRVILLIGDGSAQLTI--QELGSMLRDKQHPIILVLNNEG  460 (539)
T ss_pred             hhccCCCCCeEEechhhhhhhhHHHHHHHHHhc----CCCCCeEEEEcCcHHHhHH--HHHHHHHHcCCCCEEEEEeCCc
Confidence            456666776666677889999999999999998    5899999999999987742  449999999999999998887 


Q ss_pred             Ccceeecc------ccCCCccHhhhc--CCcc----eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         82 YGMGTSAE------RSSASTDYYTRG--DYIP----GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        82 ~~~~~~~~------~~~~~~d~~~~A--~G~~----~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      |++.....      .....+||.+.|  +|++    +++|+  +.+++.+++++|+    +.++|+|||+.+.
T Consensus       461 y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i~  527 (539)
T TIGR03393       461 YTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVLP  527 (539)
T ss_pred             eEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh----ccCCeEEEEEEcC
Confidence            87643211      112347888874  6775    78996  5777766666654    5689999999885

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

Probab=99.65  E-value=5.1e-16  Score=144.11  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=99.9

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHH---HHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQN---FEAYNIAKLWGIP-CIYVCENNGYGMG   85 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~---~EaL~~Aa~~~LP-vi~Vv~NN~~~~~   85 (355)
                      +...++...+|.||++++.|+|+++    ++++.+|+|++|||++++|.+   |++..++..+++. |+.|+.||+|.++
T Consensus        52 ~~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~  127 (227)
T cd02011          52 PETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIS  127 (227)
T ss_pred             ccCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCccc
Confidence            4566788889999999999999975    478999999999999999986   8888888888888 8888889999999


Q ss_pred             eecccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHH
Q psy14560         86 TSAERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYAS  129 (355)
Q Consensus        86 ~~~~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar  129 (355)
                      ++.... .+..++.++  ++|++.+.|||+|++++++++++|+++++
T Consensus       128 ~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~  174 (227)
T cd02011         128 NPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAI  174 (227)
T ss_pred             CCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence            988754 345677776  68999999999999999999998888654

This enzyme requires divalent magnesium ions and TPP for activity.

>PRK06163 hypothetical protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=140.34  Aligned_cols=114  Identities=23%  Similarity=0.280  Sum_probs=88.2

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc-CCCEEEEEEeCC-Ccceeecc-ccCCC
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-GIPCIYVCENNG-YGMGTSAE-RSSAS   94 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~-~LPvi~Vv~NN~-~~~~~~~~-~~~~~   94 (355)
                      .+|+||+++|+|+|+++|    .|+++|||++|||++++..  ..|.|++++ ++|+++||.||+ |++..... .....
T Consensus        55 ~~GsMG~glpaAiGaalA----~p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~  128 (202)
T PRK06163         55 MLGSMGLAFPIALGVALA----QPKRRVIALEGDGSLLMQL--GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQT  128 (202)
T ss_pred             eecccccHHHHHHHHHHh----CCCCeEEEEEcchHHHHHH--HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCC
Confidence            379999999999999998    4889999999999976532  348899887 689999999996 87632211 11234


Q ss_pred             ccHhhh--cCCcc-eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         95 TDYYTR--GDYIP-GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        95 ~d~~~~--A~G~~-~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      +||.+.  |+|++ +++|+  +..++..++++++    +.++|+|||+.+.+
T Consensus       129 ~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~  174 (202)
T PRK06163        129 VDVVAIARGAGLENSHWAA--DEAHFEALVDQAL----SGPGPSFIAVRIDD  174 (202)
T ss_pred             CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            789887  47998 67886  6778877777765    45899999999864

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=99.65  E-value=6.8e-16  Score=162.22  Aligned_cols=130  Identities=24%  Similarity=0.187  Sum_probs=101.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc-----CCCEEEEE
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW-----GIPCIYVC   77 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~-----~LPvi~Vv   77 (355)
                      +++++..|......+++|+||+++|.|+|+++|    .|+++|||++|||++++....| |.||+++     +||+++||
T Consensus       398 ~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV  472 (597)
T PRK08273        398 RDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA----HPDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLV  472 (597)
T ss_pred             HhCCCCCCCeEEecCccccccchHHHHHHHHHh----CCCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEE
Confidence            456677777777778889999999999999998    4799999999999986642233 8999999     89999999


Q ss_pred             EeCC-Ccceeec------------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         78 ENNG-YGMGTSA------------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        78 ~NN~-~~~~~~~------------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      +||+ |++....            ....+.+||.+.  ++|+++++|+  +++++.+++++|+    +.++|+|||+.+.
T Consensus       473 ~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~~~  546 (597)
T PRK08273        473 LNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEAL----AADRPVVLEVKTD  546 (597)
T ss_pred             EeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence            9997 7653211            011134678887  4799999997  5777777777665    4589999999986


Q ss_pred             e
Q psy14560        143 R  143 (355)
Q Consensus       143 R  143 (355)
                      +
T Consensus       547 ~  547 (597)
T PRK08273        547 P  547 (597)
T ss_pred             C
Confidence            4

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=99.65  E-value=8.2e-16  Score=161.08  Aligned_cols=129  Identities=24%  Similarity=0.234  Sum_probs=99.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++....|+.....+..|+||+++|.|+|+++|    .|+++|||++|||+++++ ..| |.||+++++|+++||+||+ 
T Consensus       391 ~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la----~p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~  464 (578)
T PRK06546        391 RYITPNGRRRVIGSFRHGSMANALPHAIGAQLA----DPGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNST  464 (578)
T ss_pred             HhcCCCCCceEEccCCcccccchhHHHHHHHHh----CCCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCc
Confidence            345555565555566789999999999999998    478999999999998764 334 8999999999999999998 


Q ss_pred             Ccceee---------ccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTS---------AERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~---------~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++...         .......+||.++|  +|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       465 ~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~  531 (578)
T PRK06546        465 LGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAF----AHPGPALVDVVTDP  531 (578)
T ss_pred             cccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            676320         01123457898874  799999997  6888877777765    46899999999864

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.4e-15  Score=156.46  Aligned_cols=134  Identities=22%  Similarity=0.231  Sum_probs=113.2

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhc-----CC-----CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK-----GT-----GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~-----~~-----~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      +.++..++|+||+|++.|+|.|+|.+..     +|     |.-++|++|||.+++|..+|+..+|..++|. +|++..+|
T Consensus       108 t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N  187 (663)
T COG0021         108 TPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSN  187 (663)
T ss_pred             CCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCC
Confidence            4567788999999999999999998763     22     4689999999999999999999999999998 77788899


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      +++|.......+ ..|..+|  |+||.++ .+||+|++++.+|+++|.+   ..++|++|+|+|.-.+|-..
T Consensus       188 ~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~  255 (663)
T COG0021         188 DISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPN  255 (663)
T ss_pred             CceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCC
Confidence            999987766655 5778776  8999999 7799999998888777654   26799999999987766544

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.65  E-value=7.2e-16  Score=163.18  Aligned_cols=136  Identities=23%  Similarity=0.265  Sum_probs=105.9

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cc-------
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GM-------   84 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~-------   84 (355)
                      .+..-++|++|.+++.|+|+|+|.++++.+..|+|++|||++++|.+||+|+.|+.+++|+++||+||++ ++       
T Consensus       137 ~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s  216 (677)
T PLN02582        137 EYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDG  216 (677)
T ss_pred             CCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCC
Confidence            3445678999999999999999999999999999999999999999999999999999999999999986 33       


Q ss_pred             -eeecccc-------CCCc---------------------cHhh------------------hcCCcceE-EEeCCCHHH
Q psy14560         85 -GTSAERS-------SAST---------------------DYYT------------------RGDYIPGI-WVDGMDVLA  116 (355)
Q Consensus        85 -~~~~~~~-------~~~~---------------------d~~~------------------~A~G~~~~-~VdG~D~~~  116 (355)
                       +......       ...+                     .+.+                  .++|+.++ .|||||..+
T Consensus       217 ~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~  296 (677)
T PLN02582        217 PAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDD  296 (677)
T ss_pred             CCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHH
Confidence             1111000       0000                     0100                  13689977 999999998


Q ss_pred             HHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560        117 VREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus       117 v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                      +.++++++.+.  ..++|++|++.|.+.+|+...
T Consensus       297 L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a  328 (677)
T PLN02582        297 LVTILREVKST--KTTGPVLIHVVTEKGRGYPYA  328 (677)
T ss_pred             HHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence            88887766431  126899999999999988754

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=99.65  E-value=8.1e-16  Score=160.07  Aligned_cols=129  Identities=20%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCC-CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGT-GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~   81 (355)
                      ++++...|+.....++.|+||+++|.|+|+++|    .| +++|||++|||++.+..  .+|.||++++||+++||.||+
T Consensus       379 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~~Vv~i~GDGsf~~~~--~eL~Ta~~~~lpi~ivV~NN~  452 (549)
T PRK06457        379 RHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA----VENKRQVISFVGDGGFTMTM--MELITAKKYDLPVKIIIYNNS  452 (549)
T ss_pred             HhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc----CCCCCeEEEEEcccHHhhhH--HHHHHHHHHCCCeEEEEEECC
Confidence            456666776667677889999999999999998    46 89999999999986642  348999999999999999887


Q ss_pred             -Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 -YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 -~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                       |++....         ......+||.+.  ++|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       453 ~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~  520 (549)
T PRK06457        453 KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL----NTKGPAVLDAIVDP  520 (549)
T ss_pred             ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence             7753210         111235789887  4799999997  5778877777765    46889999999864

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=99.65  E-value=1e-15  Score=138.00  Aligned_cols=111  Identities=25%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcC-CCEEEEEEeCC-CcceeeccccC-CCc
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWG-IPCIYVCENNG-YGMGTSAERSS-AST   95 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~-LPvi~Vv~NN~-~~~~~~~~~~~-~~~   95 (355)
                      +|+||+++|+|+|+++|    . +++|||++|||++.++.  ++|.+|++++ +|+++||.||+ |++........ ..+
T Consensus        41 ~gsmG~~lpaAiGa~la----~-~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~  113 (181)
T TIGR03846        41 LGSMGLASSIGLGLALA----T-DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT  113 (181)
T ss_pred             ccccccHHHHHHHHHHc----C-CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence            79999999999999998    3 78899999999987643  4589999999 59999999888 77753211111 257


Q ss_pred             cHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         96 DYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        96 d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ||++.  |+|+++.+ |+  +++++.++++ +    ++.++|+|||+.+.+
T Consensus       114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a----~~~~~p~li~v~~~~  157 (181)
T TIGR03846       114 DLELVAKAAGIRNVEKVA--DEEELRDALK-A----LAMKGPTFIHVKVKP  157 (181)
T ss_pred             CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-H----HcCCCCEEEEEEeCC
Confidence            88886  47999988 75  5777766664 4    346899999999863

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>PRK07586 hypothetical protein; Validated

Probab=99.65  E-value=6.6e-16  Score=159.34  Aligned_cols=126  Identities=22%  Similarity=0.229  Sum_probs=95.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+++.... .|+||+++|.|+|+++|    .|+++|||++|||++++..  .+|.||++++||+++||.||+ 
T Consensus       369 ~~~~~~~~~~~~~~~-~g~mG~~lpaaiGa~lA----~p~r~Vv~i~GDGsf~m~~--~EL~Ta~~~~lpv~ivV~NN~~  441 (514)
T PRK07586        369 PATAGAAPHDWLTLT-GGAIGQGLPLATGAAVA----CPDRKVLALQGDGSAMYTI--QALWTQARENLDVTTVIFANRA  441 (514)
T ss_pred             HhccccCCCCEEccC-CcccccHHHHHHHHHHh----CCCCeEEEEEechHHHhHH--HHHHHHHHcCCCCEEEEEeCch
Confidence            456667776665443 49999999999999998    4799999999999987742  459999999999999998887 


Q ss_pred             Ccceeec-----c----------ccC--CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA-----E----------RSS--ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~-----~----------~~~--~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....     .          ...  +.+||.+.  |+|+++++|+  ++.++.+++++|+    +.++|+|||+.+
T Consensus       442 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~----~~~~p~liev~~  514 (514)
T PRK07586        442 YAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL----AEPGPHLIEAVV  514 (514)
T ss_pred             hHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence            8764210     0          011  23688887  4799999997  5777766666655    468999999863

>PRK08322 acetolactate synthase; Reviewed

Probab=99.65  E-value=9.9e-16  Score=159.10  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=101.4

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.....++.|+||+++|.|+|+++|    .|+++||+++|||++.+..  .+|.||+++++|+++||.||+ 
T Consensus       389 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~iiV~NN~~  462 (547)
T PRK08322        389 RNYRAYEPNTCLLDNALATMGAGLPSAIAAKLV----HPDRKVLAVCGDGGFMMNS--QELETAVRLGLPLVVLILNDNA  462 (547)
T ss_pred             HhcccCCCCCEEcCCCcccccchhHHHHHHHHh----CCCCcEEEEEcchhHhccH--HHHHHHHHhCCCeEEEEEeCCC
Confidence            456677787777777889999999999999998    4889999999999987643  349999999999999998887 


Q ss_pred             Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         ......+||.+.  ++|+++++|+  +++++.+++++++    +.++|+|||+.+.+
T Consensus       463 ~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~  529 (547)
T PRK08322        463 YGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEAL----AQPGVHVIDCPVDY  529 (547)
T ss_pred             cchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            7764210         111235789887  4799999997  5778877777765    45899999999864

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.64  E-value=8.2e-16  Score=160.74  Aligned_cols=130  Identities=22%  Similarity=0.245  Sum_probs=101.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|    .|+++||+++|||++.+..  ++|.||+++++|+++||.||+ 
T Consensus       404 ~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lpv~~vV~NN~~  477 (574)
T PRK06882        404 LHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFA----HPEATVVCVTGDGSIQMNI--QELSTAKQYDIPVVIVSLNNRF  477 (574)
T ss_pred             HhccccCCCcEEeCCCcccccchhHHHHHHHhh----cCCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEECch
Confidence            456777787777777889999999999999998    4788999999999987752  559999999999999999998 


Q ss_pred             Ccceeec----------ccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          ... ...+||.++  |+|+++++|+  +.+++.+++++|++.   .++|+|||+.+.+
T Consensus       478 ~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~  547 (574)
T PRK06882        478 LGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE  547 (574)
T ss_pred             hHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence            6643210          111 124688886  5799999997  577777777776642   3789999999974

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=99.64  E-value=1.2e-16  Score=154.25  Aligned_cols=106  Identities=40%  Similarity=0.608  Sum_probs=96.2

Q ss_pred             cchhHHHHHHHH---hh----hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccCCCC
Q psy14560        158 DPITSFKEKMLN---SE----LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKG  230 (355)
Q Consensus       158 DpIr~fee~Li~---~G----l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~  230 (355)
                      -.+|.|++++.+   +|    .+....+||+.+++...+|++.||++++||+|++.+++|+++.++|+|++|+.+|+++ 
T Consensus         6 ~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~-   84 (293)
T cd02000           6 VLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKETGPCK-   84 (293)
T ss_pred             HHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCC-
Confidence            356899998765   33    3677899999999999999999999999999999999999999999999999999987 


Q ss_pred             CCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560        231 KGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       231 ~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                                 |||||||+.+  .|+++.++++|.|+|.|+...++.
T Consensus        85 -----------G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~  120 (293)
T cd02000          85 -----------GRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL  120 (293)
T ss_pred             -----------CCCCCCCCCchhcCccccccccccchhHHHHHHHHH
Confidence                       9999999986  799999999999999999886664

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>PRK08266 hypothetical protein; Provisional

Probab=99.64  E-value=9.7e-16  Score=159.09  Aligned_cols=131  Identities=24%  Similarity=0.270  Sum_probs=100.9

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      ++++..|+.....+..|+||+++|.|+|++++    .|+++|||++|||+++++  .++|.||++++||+++||.||+ |
T Consensus       386 ~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y  459 (542)
T PRK08266        386 AFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAY  459 (542)
T ss_pred             hcccCCCCcEEeCCCCcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcc
Confidence            45566676665666789999999999999887    578999999999998886  2569999999999999999886 8


Q ss_pred             cceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560         83 GMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG  146 (355)
Q Consensus        83 ~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G  146 (355)
                      ++.....          .....+||.++  |+|+++++|+.  .+++.+++++++    +.++|+|||+.++|...
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev~i~~~~~  529 (542)
T PRK08266        460 GNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDS--PEELRAALEAAL----AHGGPVLIEVPVPRGSE  529 (542)
T ss_pred             hHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCcEEEEEEecCCCC
Confidence            7642111          11234688887  47999999984  667766666654    46789999999986543

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=99.64  E-value=1.3e-15  Score=158.93  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=102.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|    .|+++||+++|||++++. +.| |.||+++++|+++||.||+ 
T Consensus       402 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la----~~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~  475 (564)
T PRK08155        402 QAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALA----NPERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEA  475 (564)
T ss_pred             HhccccCCCeEEeCCCcccccchhHHHHHHHHh----CCCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCc
Confidence            467777887777777889999999999999998    478999999999998774 455 8999999999999999998 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ..+||++.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       476 ~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~~~~  544 (564)
T PRK08155        476 LGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAI----NRPGPALIHVRIDA  544 (564)
T ss_pred             ccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            8774321          0111 34688887  4799999997  4677777666665    46789999999864

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.64  E-value=7.5e-16  Score=162.48  Aligned_cols=126  Identities=19%  Similarity=0.226  Sum_probs=98.0

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      +++ ..|+++...+++|+||+++|.|+|+++|    .|+++||+++|||++++. .. .|.||++++||+++||+||+ |
T Consensus       419 ~~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~-~~-eL~Ta~r~~lpvi~vV~NN~~~  491 (616)
T PRK07418        419 FLR-NGPRRWISSAGLGTMGFGMPAAMGVKVA----LPDEEVICIAGDASFLMN-IQ-ELGTLAQYGINVKTVIINNGWQ  491 (616)
T ss_pred             hhh-cCCCeEEcCCCccccccHHHHHHHHHHh----CCCCcEEEEEcchHhhhh-HH-HHHHHHHhCCCeEEEEEECCcc
Confidence            444 4576666667889999999999999998    489999999999998764 23 49999999999999999998 6


Q ss_pred             cceeecc----------ccC--CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         83 GMGTSAE----------RSS--ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        83 ~~~~~~~----------~~~--~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ++.....          ...  ..+||++.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.
T Consensus       492 g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~----~~~~p~lIeV~i~  559 (616)
T PRK07418        492 GMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEAL----AHDGPVLIDVHVR  559 (616)
T ss_pred             hHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence            6532110          011  24788887  4799999997  6777777776665    4678999999985

>PRK08617 acetolactate synthase; Reviewed

Probab=99.64  E-value=1.1e-15  Score=159.07  Aligned_cols=130  Identities=17%  Similarity=0.206  Sum_probs=101.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+...+.++.|+||+++|.|+|+++|    .|+++|||++|||++++..  .+|.||+++++|+++||.||+ 
T Consensus       397 ~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~  470 (552)
T PRK08617        397 RYFRSYEPRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSA--MELETAVRLKLNIVHIIWNDGH  470 (552)
T ss_pred             HhccccCCCeEEecCccccccccccHHHhhHhh----cCCCcEEEEEechHHhhhH--HHHHHHHHhCCCeEEEEEECCc
Confidence            456667787777777889999999999999998    4889999999999987643  349999999999999999887 


Q ss_pred             Ccceeec-----c----ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTSA-----E----RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~~-----~----~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |++....     .    .....+||.+.|  +|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+.
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~~  538 (552)
T PRK08617        471 YNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDYS  538 (552)
T ss_pred             cchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEeccc
Confidence            7763211     0    112347888874  799999997  5777777776665    467899999998753

>PLN02470 acetolactate synthase

Probab=99.64  E-value=1.1e-15  Score=160.22  Aligned_cols=129  Identities=23%  Similarity=0.283  Sum_probs=101.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|+++|    .|+++|||++|||++++..  .+|.||++++||+++||.||+ 
T Consensus       409 ~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~  482 (585)
T PLN02470        409 QWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQH  482 (585)
T ss_pred             HhcccCCCCeEEcCCccccccchHHHHHHHHHh----CCCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence            466777887777778889999999999999998    4789999999999987753  349999999999999999887 


Q ss_pred             Ccceeec----------cccCC--------CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA----------ERSSA--------STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~----------~~~~~--------~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....          .....        .+||.+.  |+|+++.+|+  +++++.+++++|++    .++|+|||+.+
T Consensus       483 yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i  556 (585)
T PLN02470        483 LGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIV  556 (585)
T ss_pred             chHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence            7653210          00111        2688887  4799999997  57788777777653    57899999998


Q ss_pred             ee
Q psy14560        142 YR  143 (355)
Q Consensus       142 ~R  143 (355)
                      .+
T Consensus       557 ~~  558 (585)
T PLN02470        557 PH  558 (585)
T ss_pred             CC
Confidence            64

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.63  E-value=1.5e-15  Score=158.54  Aligned_cols=129  Identities=24%  Similarity=0.283  Sum_probs=101.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++.+|.++...+++|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||+++++|+++||.||+ 
T Consensus       397 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~  470 (561)
T PRK06048        397 QYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGY  470 (561)
T ss_pred             HhcccCCCCeEEeCCCccccccHHHHHHHHHHh----CCCCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCc
Confidence            466677787777777789999999999999998    4789999999999987753  349999999999999999887 


Q ss_pred             Ccceeec----------ccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          ... .+.+||.+.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       471 y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~----~~~~p~liev~~~~  539 (561)
T PRK06048        471 LGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAV----ASDRPVVIDFIVEC  539 (561)
T ss_pred             cHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            7653210          011 135789887  4799999997  4777777777665    46899999999864

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=99.63  E-value=1.5e-15  Score=158.72  Aligned_cols=129  Identities=22%  Similarity=0.193  Sum_probs=100.8

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|.+....++.|+||+++|.|+|+++|    .|+++||+++|||++.+..  .+|.||++++||+++||.||+ 
T Consensus       404 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~  477 (572)
T PRK06456        404 VFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRT  477 (572)
T ss_pred             HhcCcCCCCcEEcCCCcccccchhHHHHHHHHh----CCCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCc
Confidence            345667787777777889999999999999998    4789999999999976653  349999999999999999998 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ..+||.+.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       478 yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~  546 (572)
T PRK06456        478 LGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAI----KEDIPAVIRVPVDK  546 (572)
T ss_pred             hHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence            7764311          0011 24688887  4799999996  5777777766655    46899999999975

>PRK08611 pyruvate oxidase; Provisional

Probab=99.63  E-value=1.6e-15  Score=158.86  Aligned_cols=129  Identities=16%  Similarity=0.137  Sum_probs=100.5

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|.......+.|+||+++|.|+|++++    .|+++||+++|||++.+. . .+|.||+++++|+++||.||+ 
T Consensus       391 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la----~p~~~Vv~i~GDGsf~m~-~-~eL~Ta~r~~l~~iivV~NN~~  464 (576)
T PRK08611        391 RYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFSMV-M-QDFVTAVKYKLPIVVVVLNNQQ  464 (576)
T ss_pred             hcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHh----CCCCcEEEEEcccHHhhh-H-HHHHHHHHhCCCeEEEEEeCCc
Confidence            466777776666667789999999999999998    478999999999998774 2 448999999999999998887 


Q ss_pred             Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         ......+||.+.  ++|+++.+|+  +++++.+++++++    +.++|+|||+.+.+
T Consensus       465 ~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~vd~  531 (576)
T PRK08611        465 LAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEAL----AQDKPVIIDVYVDP  531 (576)
T ss_pred             chHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            7753210         112235789887  4799999996  5777777766655    46899999999964

>KOG0451|consensus

Probab=99.63  E-value=1.1e-15  Score=153.94  Aligned_cols=182  Identities=19%  Similarity=0.215  Sum_probs=148.1

Q ss_pred             ccCCCCCccccCCcccccchHHHHHHHHHHHhcC------C--------CCeEEEEeCccc-ccccHHHHHHHHHHHc--
Q psy14560          7 VINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKG------T--------GGVCFALYGDGA-SNQGQNFEAYNIAKLW--   69 (355)
Q Consensus         7 ~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~------~--------~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~--   69 (355)
                      ...+-...+.++.+++....|+|+|-+.+++...      |        ....|.++||++ .++|.++|+++++-..  
T Consensus       270 ~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHF  349 (913)
T KOG0451|consen  270 LGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHF  349 (913)
T ss_pred             cCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCce
Confidence            3445555667788999999999999999877542      2        224567889999 5899999999985322  


Q ss_pred             CCC-EEEEEEeCCCcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560         70 GIP-CIYVCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG  146 (355)
Q Consensus        70 ~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G  146 (355)
                      ++- -+++|.||+.+++++..+..+....+++|  .++|+++|+|.||++|.+|.+-|+++-|++++.++|++.++|..|
T Consensus       350 rvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwg  429 (913)
T KOG0451|consen  350 RVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWG  429 (913)
T ss_pred             eecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhc
Confidence            222 79999999999999887776655555554  599999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCc-----cee-----c-chhHHHHHHHHhhhhhhhhHHHHHHhhHHH
Q psy14560        147 HSMSDPGT-----SFR-----D-PITSFKEKMLNSELATVDELKEACAVGMRA  188 (355)
Q Consensus       147 Hs~~D~~~-----~YR-----D-pIr~fee~Li~~Gl~t~~e~qEa~qvg~~~  188 (355)
                      |++-|++.     +|+     . .-+.|.++|++.|++++++..|+.++..+.
T Consensus       430 Hnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~  482 (913)
T KOG0451|consen  430 HNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKY  482 (913)
T ss_pred             cccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            99988776     343     2 226788999999999999999999887544

>PLN02573 pyruvate decarboxylase

Probab=99.63  E-value=1.4e-15  Score=159.48  Aligned_cols=124  Identities=19%  Similarity=0.081  Sum_probs=95.4

Q ss_pred             CCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceee
Q psy14560          9 NPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTS   87 (355)
Q Consensus         9 ~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~   87 (355)
                      .+......+++|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||++++||+++||.||+ |++...
T Consensus       417 ~~~~~~~~~~~gsmG~glpaaiGa~lA----~p~r~vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~vV~NN~~yg~~~~  490 (578)
T PLN02573        417 EGCGYEFQMQYGSIGWSVGATLGYAQA----APDKRVIACIGDGSFQVTA--QDVSTMIRCGQKSIIFLINNGGYTIEVE  490 (578)
T ss_pred             CCCeEEeecchhhhhhhhhHHHHHHHh----CCCCceEEEEeccHHHhHH--HHHHHHHHcCCCCEEEEEeCCceeEEEe
Confidence            343444567789999999999999998    4789999999999987743  349999999999999999888 887542


Q ss_pred             cc----ccCCCccHhhhc--CC-----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         88 AE----RSSASTDYYTRG--DY-----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        88 ~~----~~~~~~d~~~~A--~G-----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ..    .....+||.++|  +|     +++.+|+  +++++.+++++|++.  +.++|+|||+.+.
T Consensus       491 ~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~  552 (578)
T PLN02573        491 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH  552 (578)
T ss_pred             ecccCccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence            21    112347888874  43     8899998  477887777777632  2588999999885

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.63  E-value=1.8e-15  Score=158.03  Aligned_cols=129  Identities=24%  Similarity=0.210  Sum_probs=101.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|+++|    .|+++|||++|||++++. ..| |.||++++||+++||.||+ 
T Consensus       397 ~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~  470 (563)
T PRK08527        397 QFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA----VPDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNF  470 (563)
T ss_pred             HhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCc
Confidence            466777887777778889999999999999998    478899999999998774 344 9999999999999999887 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ..+||.++  ++|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       471 ~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lieV~v~~  539 (563)
T PRK08527        471 LGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEAL----ESDKVALIDVKIDR  539 (563)
T ss_pred             chhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence            6653211          0111 24688887  4799999997  5777777766665    46889999999975

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=99.63  E-value=1.8e-15  Score=157.29  Aligned_cols=129  Identities=22%  Similarity=0.239  Sum_probs=101.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...++.|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||+++++|+++||.||+ 
T Consensus       384 ~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~  457 (548)
T PRK08978        384 QHMRFTRPENFITSSGLGTMGFGLPAAIGAQVA----RPDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQR  457 (548)
T ss_pred             HhcccCCCCeEEeCCchhhhhchHHHHHHHHHh----CCCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence            466777887777777889999999999999998    4789999999999987643  349999999999999999887 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ..+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~id~  526 (548)
T PRK08978        458 LGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLL----NSEGPYLLHVSIDE  526 (548)
T ss_pred             cHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            7653211          0111 34788887  4799999996  5777777766665    46789999999975

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=99.63  E-value=2.2e-16  Score=159.50  Aligned_cols=108  Identities=31%  Similarity=0.519  Sum_probs=96.7

Q ss_pred             cee--cchhHHHHHHHH---h----hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560        155 SFR--DPITSFKEKMLN---S----ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRT  225 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~----Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~  225 (355)
                      +||  -.+|.|++++.+   +    |.++...+||+++++...+|+++||++++||+|++.+++|+++.++|+|++|+.+
T Consensus        91 lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~  170 (433)
T PLN02374         91 LYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKAT  170 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHcCCCC
Confidence            466  456999998765   2    3466788999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560        226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                      |+++            |||||||+.+  +|+++.+++||.|+|+|+.--++
T Consensus       171 g~~~------------GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A  209 (433)
T PLN02374        171 GCCR------------GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFS  209 (433)
T ss_pred             CCCC------------CCCCcCccCchhhCCCCCceeccCchhHHHHHHHH
Confidence            9987            9999999986  79999999999999999976444

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=99.63  E-value=1.4e-15  Score=158.55  Aligned_cols=129  Identities=24%  Similarity=0.295  Sum_probs=100.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|    .|+++||+++|||++.+. +. +|.||+++++|+++||.||+ 
T Consensus       395 ~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la----~~~~~vv~~~GDG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~  468 (558)
T TIGR00118       395 QFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA----KPESTVICITGDGSFQMN-LQ-ELSTAVQYDIPVKILILNNRY  468 (558)
T ss_pred             HhcccCCCCeEEeCCccccccchhhHHHhhhhh----CCCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEeCCc
Confidence            466777787777777889999999999999988    478999999999998774 33 49999999999999999998 


Q ss_pred             Ccceee----------cc-ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTS----------AE-RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~----------~~-~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++...          .. .....+||.++  |+|+++++|+.  ++++.+++++|+    +.++|+|||+.+.+
T Consensus       469 ~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~----~~~~p~liev~~~~  537 (558)
T TIGR00118       469 LGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEAL----SSNEPVLLDVVVDK  537 (558)
T ss_pred             hHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            554320          01 11124789887  47999999985  677777777665    35899999999964

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=99.62  E-value=2.2e-15  Score=156.94  Aligned_cols=128  Identities=21%  Similarity=0.180  Sum_probs=99.4

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....+++|+||+++|.|+|+++|     ++++||+++|||++++.. .| |.||+++++|+++||.||+ 
T Consensus       400 ~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~~-~E-L~Ta~r~~l~v~~vV~NN~~  472 (554)
T TIGR03254       400 NVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFSG-ME-VETICRYNLPVCVVIFNNGG  472 (554)
T ss_pred             HhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhcccH-HH-HHHHHHcCCCEEEEEEeChh
Confidence            356778887777777789999999999999997     378999999999987753 33 9999999999999999998 


Q ss_pred             Ccce--e------eccccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMG--T------SAERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~--~------~~~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |...  .      ...... +.+||+++  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~id~  539 (554)
T TIGR03254       473 IYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL----ASGKPTLINAVIDP  539 (554)
T ss_pred             hhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence            4211  0      001111 35788887  5799999997  5778877777765    45789999999864

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK07064 hypothetical protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=157.51  Aligned_cols=127  Identities=20%  Similarity=0.257  Sum_probs=97.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+..... +.|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||++++||+++||.||+ 
T Consensus       389 ~~~~~~~p~~~~~~-~~g~mG~~lpaAiGa~lA----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~  461 (544)
T PRK07064        389 RLLPIFEPRANVHA-LGGGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLNL--GELATAVQENANMVIVLMNDGG  461 (544)
T ss_pred             HhcCccCCCceecc-CCCccccccchhhhhhhh----CcCCcEEEEEcchHhhhhH--HHHHHHHHhCCCeEEEEEeCCh
Confidence            45667777554443 348999999999999998    4789999999999987643  349999999999999999887 


Q ss_pred             Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      |++....          ......+||.+.  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.++
T Consensus       462 yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~~~  528 (544)
T PRK07064        462 YGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREAL----AKEGPVLVEVDML  528 (544)
T ss_pred             hHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEcc
Confidence            7764211          112235789887  4799999997  5777777777665    4678999999985

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=99.62  E-value=2.6e-15  Score=140.78  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER   90 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~   90 (355)
                      ..+.+..++||+++|.|+|++++    .|+++|||+.|||++ .++ + .+|.+|+++++|+++||.||+ |++......
T Consensus        55 ~~~~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~-~-~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~  128 (235)
T cd03376          55 HVAFENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG-F-QALSGAAERGHDILYICYDNEAYMNTGIQRS  128 (235)
T ss_pred             ehhhcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH-H-HHHHHHHHcCCCeEEEEECCcccccCCCCCC
Confidence            44445568999999999998766    589999999999995 554 3 449999999999999999998 774211000


Q ss_pred             ---------------------cCCCccHhhhc--CCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         91 ---------------------SSASTDYYTRG--DYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        91 ---------------------~~~~~d~~~~A--~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                                           ....+||.++|  +|++++. ++-.+++++.+++++|++    .++|+|||+.+.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~  200 (235)
T cd03376         129 GSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSP  200 (235)
T ss_pred             CCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence                                 11336888874  6988863 455678888887777764    578999999764

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=99.62  E-value=4.6e-15  Score=135.02  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=86.9

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc---
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER---   90 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~---   90 (355)
                      ....++||+++|+|+|+++|    .|+++||++.|||+ ++++ . .+|.+|+++++|+++||.||+ |++......   
T Consensus        47 ~~~~g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~-~-~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~  120 (193)
T cd03375          47 YGFHTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIG-G-NHFIHAARRNIDITVIVHNNQIYGLTKGQASPTT  120 (193)
T ss_pred             cchhhhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhcc-H-HHHHHHHHhCCCeEEEEEcCcccccCCCccCCCC
Confidence            33458999999999999998    58999999999999 4443 2 348999999999999999998 776432110   


Q ss_pred             -------------cCCCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         91 -------------SSASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        91 -------------~~~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                                   ..+.+||.+.|  +|++++ ++.-.++.++.+++++|++    .++|+|||+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~~  184 (193)
T cd03375         121 PEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSP  184 (193)
T ss_pred             CCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEECC
Confidence                         00135787764  688885 2233478888888887764    588999999753

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=99.61  E-value=2.4e-15  Score=157.78  Aligned_cols=126  Identities=17%  Similarity=0.256  Sum_probs=96.6

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      +++. .|+++...++.|+||+++|.|+|+++|    .|+++||+++|||++++..  .+|.||+++++|+++||.||+ |
T Consensus       415 ~~~~-~~~~~~~~~~~g~mG~glpaaiGaala----~p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~~~~vV~NN~~y  487 (585)
T CHL00099        415 FLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQMNL--QELGTIAQYNLPIKIIIINNKWQ  487 (585)
T ss_pred             hccC-CCCcEEcCccccchhhhHHHHHHHHHh----CCCCeEEEEEcchhhhhhH--HHHHHHHHhCCCeEEEEEECCcc
Confidence            4443 466666677889999999999999998    4789999999999987642  349999999999999999998 6


Q ss_pred             cceeec---------c-c--cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         83 GMGTSA---------E-R--SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        83 ~~~~~~---------~-~--~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ++....         . .  ....+||.++  |+|+++.+|+  +++++.+++++|+    +.++|+|||+.+.
T Consensus       488 ~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~v~  555 (585)
T CHL00099        488 GMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEAL----DYDGPVLIDCQVI  555 (585)
T ss_pred             hHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEEC
Confidence            653211         0 0  1124688886  5799999997  4777766666655    4689999999996

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=99.61  E-value=2.3e-15  Score=157.58  Aligned_cols=129  Identities=26%  Similarity=0.316  Sum_probs=96.1

Q ss_pred             ccccccCCCC-CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560          3 QCMIVINPSP-KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG   81 (355)
Q Consensus         3 ~~~~~~~p~~-~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~   81 (355)
                      ++++...|.. +...+++|+||+++|.|+|+++|    .|+++|||++|||++++  ..+.|++|+++++|+++||.||+
T Consensus       419 ~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~  492 (578)
T PRK06112        419 NFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNG  492 (578)
T ss_pred             HhcCccCCCceEECCCCccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCC
Confidence            3444445542 33345679999999999999987    57899999999999865  34669999999999999999998


Q ss_pred             -Ccceeeccc----------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 -YGMGTSAER----------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 -~~~~~~~~~----------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                       |++......          ....+||.++  ++|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       493 ~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~  561 (578)
T PRK06112        493 ILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIEVITDP  561 (578)
T ss_pred             ccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence             665332110          1124688887  4799999997  4667766666654    46899999999864

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=99.61  E-value=1.9e-15  Score=157.91  Aligned_cols=128  Identities=21%  Similarity=0.242  Sum_probs=100.1

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++.+|.++...+++|+||+++|.|+|+++|    .|+++||+++|||++++..  ..|.||+++++|+++||.||+ 
T Consensus       401 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~  474 (566)
T PRK07282        401 QYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHS  474 (566)
T ss_pred             HhcccCCCCcEecCCccccccchhhHhheehee----cCCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCC
Confidence            467777887777777889999999999999998    5899999999999987643  349999999999999999887 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ..+||++.  |+|+++.+|+  ++.++.++++ ++    ..++|+|||+.+.+
T Consensus       475 y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~----~~~~p~lIeV~v~~  542 (566)
T PRK07282        475 LGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI----TEDVPMLIEVDISR  542 (566)
T ss_pred             chHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh----cCCCCEEEEEEeCC
Confidence            7764311          1112 35789887  4799999997  5677766664 22    34789999999864

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.61  E-value=8.4e-15  Score=156.39  Aligned_cols=131  Identities=18%  Similarity=0.065  Sum_probs=111.2

Q ss_pred             cccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560         15 FYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT   86 (355)
Q Consensus        15 ~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~   86 (355)
                      +..++|+||.|++.|+|.|++.|+       ...+..|+|++|||.++||++||++.+|++++|. +++||.+|...+..
T Consensus       184 ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG  263 (885)
T TIGR00759       184 WQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDG  263 (885)
T ss_pred             EEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence            555789999999999999999996       5578899999999999999999999999999998 99999999988877


Q ss_pred             eccccCC-CccHhhh--cCCcceEEE------------------------------------------------------
Q psy14560         87 SAERSSA-STDYYTR--GDYIPGIWV------------------------------------------------------  109 (355)
Q Consensus        87 ~~~~~~~-~~d~~~~--A~G~~~~~V------------------------------------------------------  109 (355)
                      +...... ..++.++  |+||.++.|                                                      
T Consensus       264 ~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~  343 (885)
T TIGR00759       264 PVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKA  343 (885)
T ss_pred             ccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHH
Confidence            6654322 2455553  789999999                                                      


Q ss_pred             ---------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560        110 ---------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus       110 ---------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs  148 (355)
                                     +|||+.+|++|+..|.+.   .++|++|.+.|...+|.+
T Consensus       344 lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~  394 (885)
T TIGR00759       344 LVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMG  394 (885)
T ss_pred             HhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence                           599999999998877642   357999999999888765

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=99.61  E-value=2e-15  Score=156.45  Aligned_cols=126  Identities=24%  Similarity=0.301  Sum_probs=96.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|.++.. ..+|+||+++|.|+|++++    .|+++|||++|||+++++.  ++|++|+++++|+++||.||+ 
T Consensus       391 ~~~~~~~~~~~~~-~~~g~mG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~  463 (530)
T PRK07092        391 EHLPMRRQGSFYT-MASGGLGYGLPAAVGVALA----QPGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGR  463 (530)
T ss_pred             HhcCcCCCCceEc-cCCCcccchHHHHHHHHHh----CCCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChH
Confidence            5666666755543 3469999999999999998    4789999999999988763  669999999999999999998 


Q ss_pred             Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....          .......||.++  ++|+++.+|+  ++.++.+++++    +++.++|+|||+.+
T Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~----a~~~~~p~liev~~  529 (530)
T PRK07092        464 YGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALAR----ALAADGPVLVEVEV  529 (530)
T ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHH----HHhCCCCEEEEEEc
Confidence            8764211          112235788887  4799999998  46666555555    44578999999986

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=99.61  E-value=2.3e-15  Score=158.69  Aligned_cols=130  Identities=22%  Similarity=0.244  Sum_probs=101.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|    .|+++|||++|||++.+..  .+|.||++++||+++||.||+ 
T Consensus       430 ~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~ivV~NN~~  503 (612)
T PRK07789        430 QFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG----RPDKEVWAIDGDGCFQMTN--QELATCAIEGIPIKVALINNGN  503 (612)
T ss_pred             HhcccCCCCeEEcCCCcccccchhhhHHhhhcc----CCCCcEEEEEcchhhhccH--HHHHHHHHcCCCeEEEEEECCc
Confidence            467777887777777889999999999999998    4789999999999987642  349999999999999999887 


Q ss_pred             Ccceeec----------cccC-----CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-----ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-----~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          ....     ..+||.+.  |+|+++++|+  +++++.+++++|++.   .++|+|||+.+.+
T Consensus       504 ~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~  577 (612)
T PRK07789        504 LGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK  577 (612)
T ss_pred             hHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence            7753210          0011     13689887  4799999997  577887777777642   3689999999964

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=99.60  E-value=3.6e-15  Score=155.90  Aligned_cols=129  Identities=24%  Similarity=0.304  Sum_probs=101.1

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|+++|    .|+++||+++|||++.+. +.| |+||+++++|+++||.||+ 
T Consensus       407 ~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala----~p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~  480 (571)
T PRK07710        407 QYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA----KPDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEA  480 (571)
T ss_pred             HhcccCCCCeEEcCCCcccccchHHHHHHHHHh----CCCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECch
Confidence            467777887777777889999999999999998    478999999999998764 444 9999999999999999887 


Q ss_pred             Ccceeec-----c------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA-----E------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~-----~------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....     .      .....+||++.  |+|+++.+|+.  .+++.+++++|+    +.++|+|||+.+.+
T Consensus       481 ~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lieV~vd~  549 (571)
T PRK07710        481 LGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDD--ELEAKEQLQHAI----ELQEPVVIDCRVLQ  549 (571)
T ss_pred             HHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence            7763211     0      11134788887  47999999974  666666665554    56899999999974

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=99.59  E-value=8.3e-15  Score=153.16  Aligned_cols=128  Identities=21%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....+++|+||+++|.|+|+++|     ++++||+++|||++++. ..| |.||+++++|+++||+||+ 
T Consensus       407 ~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~  479 (569)
T PRK09259        407 NIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGG  479 (569)
T ss_pred             HhcccCCCCceEeCCCCccccccHHHHHHHHhc-----CCCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChh
Confidence            456777887776677789999999999999998     37889999999998774 233 9999999999999999998 


Q ss_pred             C--ccee------e-cccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 Y--GMGT------S-AERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~--~~~~------~-~~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |  ....      . .... .+.+||+++  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~id~  547 (569)
T PRK09259        480 IYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAI----ASGKPTLINVVIDP  547 (569)
T ss_pred             HHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEECC
Confidence            3  1100      0 0011 135789887  4799999997  5778877777765    35889999999864

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=99.58  E-value=6.7e-15  Score=154.40  Aligned_cols=129  Identities=20%  Similarity=0.228  Sum_probs=99.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++.+..|..+...+++|+||+++|.|+|+++|    .|+++||+++|||++.+.. . +|.||+++++|+++||.||+ 
T Consensus       402 ~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la----~p~~~Vv~i~GDGsf~m~~-~-eL~Ta~~~~lpv~~vV~NN~~  475 (586)
T PRK06276        402 HFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVA----KPDANVIAITGDGGFLMNS-Q-ELATIAEYDIPVVICIFDNRT  475 (586)
T ss_pred             HhcccCCCCeEEcCCCccccccchhHHHhhhhh----cCCCcEEEEEcchHhhccH-H-HHHHHHHhCCCeEEEEEeCCc
Confidence            456667776666666779999999999999998    4788999999999987652 3 39999999999999999888 


Q ss_pred             Ccceeec----------cccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          .... ...||.+.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+.+
T Consensus       476 ~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~~  544 (586)
T PRK06276        476 LGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAI----KSGEPYLLDIIIDP  544 (586)
T ss_pred             hHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence            7753211          0111 24688887  4799999996  5778877777765    35789999999864

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=99.58  E-value=7.4e-15  Score=153.09  Aligned_cols=128  Identities=18%  Similarity=0.175  Sum_probs=96.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+... ....|+||+++|.|+|++++    .|+++|||++|||++++..  .+|.+|+++++|+++||.||+ 
T Consensus       399 ~~~~~~~~~~~~-~~~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~~vv~nN~~  471 (557)
T PRK08199        399 RFFRFRRYRTQL-APTSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNG--QELATAVQYGLPIIVIVVNNGM  471 (557)
T ss_pred             HhcCcCCCCeEE-CCCCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCc
Confidence            455666663333 34579999999999999988    5789999999999987632  559999999999999999998 


Q ss_pred             Ccceeec----------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA----------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~----------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....          ......+||.+.  ++|+++.+|+  +++++.+++++++    +.++|+|||+.+.+
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~v~~~~  539 (557)
T PRK08199        472 YGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIEIRIDP  539 (557)
T ss_pred             chHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCH
Confidence            7753211          011234688887  4799999998  4666666666554    46899999999864

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=99.57  E-value=1.3e-14  Score=136.08  Aligned_cols=118  Identities=14%  Similarity=0.070  Sum_probs=86.0

Q ss_pred             CCcccccchHHHHHHHHHHH-hcCCCCeEEEEeCccccc-ccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc----
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQ-YKGTGGVCFALYGDGASN-QGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER----   90 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k-~~~~~~~vv~~~GDGa~~-~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~----   90 (355)
                      +.|+||+++|.|+|++++.- ...|+++|||+.|||++. ++ +.| +.++.++++|+++||.||+ |++......    
T Consensus        62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~  139 (237)
T cd02018          62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP  139 (237)
T ss_pred             CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence            45999999999999988711 113789999999999864 33 233 6788899999999999998 665321110    


Q ss_pred             ------------cCCCccHhhhc--CCcceEE---EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         91 ------------SSASTDYYTRG--DYIPGIW---VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        91 ------------~~~~~d~~~~A--~G~~~~~---VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                                  ....+||++.|  +|+++++   |+  +++++.+++++|++   +.++|+|||+.+.
T Consensus       140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~  203 (237)
T cd02018         140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTP  203 (237)
T ss_pred             CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence                        12346898874  7999985   54  57777777777653   2688999999864

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=99.57  E-value=2.2e-14  Score=154.59  Aligned_cols=131  Identities=18%  Similarity=0.160  Sum_probs=110.0

Q ss_pred             cccCCcccccchHHHHHHHHHHHhc-------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560         15 FYGGNGIVGAQVPLGTGIAFAAQYK-------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT   86 (355)
Q Consensus        15 ~~~~~g~lG~~lp~AiGaA~A~k~~-------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~   86 (355)
                      +..++|+||.|++.|+|.|++.|+.       ..+..|+|++|||.++||++||++.+|++++|. +|+||.+|...+..
T Consensus       184 ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG  263 (889)
T TIGR03186       184 WQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG  263 (889)
T ss_pred             eEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Confidence            5557899999999999999998843       236889999999999999999999999999998 99999999988877


Q ss_pred             eccccCC-CccHhhh--cCCcceEEE------------------------------------------------------
Q psy14560         87 SAERSSA-STDYYTR--GDYIPGIWV------------------------------------------------------  109 (355)
Q Consensus        87 ~~~~~~~-~~d~~~~--A~G~~~~~V------------------------------------------------------  109 (355)
                      +...... ..++.++  |+||.+++|                                                      
T Consensus       264 ~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~  343 (889)
T TIGR03186       264 PVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAA  343 (889)
T ss_pred             ccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHH
Confidence            6654222 3466664  789999999                                                      


Q ss_pred             ---------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560        110 ---------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus       110 ---------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs  148 (355)
                                     +|||+.+|++|+.+|.+.   .++|++|.+.|...+|-+
T Consensus       344 lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTvIla~TvkG~G~~  394 (889)
T TIGR03186       344 LVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGMG  394 (889)
T ss_pred             HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence                           599999999999887642   468999999999777743

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>KOG0523|consensus

Probab=99.56  E-value=3e-14  Score=145.35  Aligned_cols=133  Identities=23%  Similarity=0.323  Sum_probs=111.8

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCC-CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceee
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGT-GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTS   87 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~   87 (355)
                      |+..++.-++|++|++++.|+|+|++.|+.+. +..|+|++|||++++|..||++++|..++|. +|+|..||+.+++.+
T Consensus       108 ~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~  187 (632)
T KOG0523|consen  108 PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGA  187 (632)
T ss_pred             ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCC
Confidence            44556677889999999999999999998877 8899999999999999999999999999999 666666777999877


Q ss_pred             ccccCCCccHhh-h--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCC
Q psy14560         88 AERSSASTDYYT-R--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSG  146 (355)
Q Consensus        88 ~~~~~~~~d~~~-~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~G  146 (355)
                      ....+ ..|+.+ +  |+||.+..|||.|.+++.+++.+|..   ..++|+.|-+.|...+|
T Consensus       188 t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t~~g~G  245 (632)
T KOG0523|consen  188 TSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATTFIGRG  245 (632)
T ss_pred             Ccccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeeeeeecC
Confidence            66554 356655 3  68999999999999988888888762   35789999999876655

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=99.54  E-value=3.2e-14  Score=147.93  Aligned_cols=121  Identities=19%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA   88 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~   88 (355)
                      |..+...+.+|+||+++|.|+|+++|.    + +++|+++|||++++. .. .|.||++++||+++||.||+ |++....
T Consensus       393 ~~~~~~~~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~-EL~Ta~r~~lpv~~vV~NN~~y~~~~~~  465 (535)
T TIGR03394       393 DAGLMAPGYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GW-ELGNCRRLGIDPIVILFNNASWEMLRVF  465 (535)
T ss_pred             CCcEECcCccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HH-HHHHHHHcCCCcEEEEEECCccceeehh
Confidence            445555667899999999999999983    3 445789999998774 23 49999999999999999887 8875422


Q ss_pred             c-----ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         89 E-----RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        89 ~-----~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .     .....+||.++  |+|+++.+|+  +++++.+++++|++   ..++|+|||+.+.
T Consensus       466 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~  521 (535)
T TIGR03394       466 QPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAMLP  521 (535)
T ss_pred             ccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEECC
Confidence            1     12235788886  5799999997  57788777777664   2355899999885

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=99.53  E-value=1.4e-14  Score=151.27  Aligned_cols=126  Identities=20%  Similarity=0.107  Sum_probs=93.2

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      +++...|.+.....+.+.||+++|.|+|+++|     ++++|||++|||++++..  .+|.||+++++|+++||.||+ |
T Consensus       409 ~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~  481 (568)
T PRK07449        409 FGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGG  481 (568)
T ss_pred             ccCcCCCceEEecCCccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCC
Confidence            44445553344345568899999999999987     488899999999987642  338999999999999999998 6


Q ss_pred             cceeec---c---------ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         83 GMGTSA---E---------RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        83 ~~~~~~---~---------~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ++....   .         .....+||+++|  +|+++.+|+  +++++.+++++|+    +.++|+|||+.+.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~id  549 (568)
T PRK07449        482 GIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKTN  549 (568)
T ss_pred             ccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence            642110   0         011246888874  799999996  5777777777665    4689999999885

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=99.52  E-value=8.5e-14  Score=133.43  Aligned_cols=111  Identities=22%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             cccccchHHHHHHHHHHHhcCCCCeEEEEeCccccc-ccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-------
Q psy14560         20 GIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASN-QGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER-------   90 (355)
Q Consensus        20 g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~-~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~-------   90 (355)
                      +++|.++|+|+|+++|    .|++.||++.|||++. .|..  .+.+|+++++|+++||.||+ |++......       
T Consensus        68 ~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g~~--el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~  141 (277)
T PRK09628         68 TTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIGGN--HTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM  141 (277)
T ss_pred             eccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhhHH--HHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence            5899999999999998    5899999999999964 3432  26779999999999999998 777431110       


Q ss_pred             ---------cCCCccHhhh--cCCcceE---EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         91 ---------SSASTDYYTR--GDYIPGI---WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        91 ---------~~~~~d~~~~--A~G~~~~---~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                               ..+..|+.+.  |+|++++   +|+  +++++.+++++|+    +.+||+|||+.+.
T Consensus       142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al----~~~Gp~lIeV~~~  201 (277)
T PRK09628        142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGF----SHKGFSFFDVFSN  201 (277)
T ss_pred             eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHH----hCCCCEEEEEcCC
Confidence                     0122466876  4698875   554  6888877777766    4689999999764

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=99.52  E-value=1.6e-13  Score=148.31  Aligned_cols=131  Identities=21%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             cccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560         15 FYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT   86 (355)
Q Consensus        15 ~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~   86 (355)
                      +.-++|+||.|++.|+|.|++.|+       ...++.|+|++|||.+.+|+.||++.+|++++|. +++||.+|...+..
T Consensus       198 ~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG  277 (896)
T PRK13012        198 WQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDG  277 (896)
T ss_pred             EecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccC
Confidence            445789999999999999999883       4567899999999999999999999999999998 99999999988876


Q ss_pred             eccccCC-CccHhhh--cCCcceEEE--------------------------e---------------------------
Q psy14560         87 SAERSSA-STDYYTR--GDYIPGIWV--------------------------D---------------------------  110 (355)
Q Consensus        87 ~~~~~~~-~~d~~~~--A~G~~~~~V--------------------------d---------------------------  110 (355)
                      +...... ..++.++  |+||.++.|                          |                           
T Consensus       278 ~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~  357 (896)
T PRK13012        278 PVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAA  357 (896)
T ss_pred             ccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHH
Confidence            6654322 2455554  789999999                          8                           


Q ss_pred             ----------------CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC
Q psy14560        111 ----------------GMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus       111 ----------------G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs  148 (355)
                                      |||+.+|++|+..|.+.   .++|++|.+.|...+|-+
T Consensus       358 lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~  408 (896)
T PRK13012        358 LVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYGMG  408 (896)
T ss_pred             HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence                            99999999999877642   457999999999887754

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=99.51  E-value=1.7e-13  Score=132.71  Aligned_cols=140  Identities=21%  Similarity=0.225  Sum_probs=96.7

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc------
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE------   89 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~------   89 (355)
                      ..+++|.++|+|+|+++|    .|+++||++.|||++ +.|.  ..|.+|+++++|+++||.||+ |++.....      
T Consensus        68 ~~g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~  141 (301)
T PRK05778         68 LHTLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE  141 (301)
T ss_pred             cchhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence            348899999999999998    589999999999995 4543  238899999999999999998 77643211      


Q ss_pred             ----------ccCCCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee--eeCCCCCCCCCc
Q psy14560         90 ----------RSSASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY--RYSGHSMSDPGT  154 (355)
Q Consensus        90 ----------~~~~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~--R~~GHs~~D~~~  154 (355)
                                .....+|+.+.|  +|+.++ +..-.++.++.+++++|+    +.+||+|||+.+.  .+.+....+.  
T Consensus       142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~----~~~GpalIeV~~~C~~~~~~~~~~~--  215 (301)
T PRK05778        142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI----SHKGFAFIDVLSPCVTFNGRNTSTK--  215 (301)
T ss_pred             CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCCcCCccc--
Confidence                      001235787764  688876 334457888877777766    4689999998642  2232222110  


Q ss_pred             ceecchhHHHHHHHH
Q psy14560        155 SFRDPITSFKEKMLN  169 (355)
Q Consensus       155 ~YRDpIr~fee~Li~  169 (355)
                      .+.+++..|+++...
T Consensus       216 ~~~~~~~~~~~~~~~  230 (301)
T PRK05778        216 SPAYMREYYKKRVYK  230 (301)
T ss_pred             CHHHHHHHHHhhcEE
Confidence            122556677776654

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.49  E-value=2.5e-13  Score=130.25  Aligned_cols=116  Identities=17%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCccccc-ccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-----
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASN-QGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE-----   89 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~-~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~-----   89 (355)
                      +..+.||.++|+|+|+++|    +|+++||++.|||++. .|.  ..|.+|+++++|+++||.||+ |++.....     
T Consensus        57 ~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~--~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~  130 (280)
T PRK11869         57 GFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGG--NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTL  130 (280)
T ss_pred             CCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcH--HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCC
Confidence            4457799999999999888    5899999999999964 322  238999999999999999998 77532111     


Q ss_pred             -----------ccCCCccHhhhc--CCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         90 -----------RSSASTDYYTRG--DYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        90 -----------~~~~~~d~~~~A--~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                                 ......|+.++|  +|++++.. +-.++.++.+++++|++    .+||+|||+.+.
T Consensus       131 ~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p  193 (280)
T PRK11869        131 KGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP  193 (280)
T ss_pred             CCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence                       011235788764  69998763 24578888877777764    689999999753

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=99.49  E-value=2.2e-13  Score=131.12  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=82.4

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-----
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER-----   90 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~-----   90 (355)
                      ..+.||.++|+|+|+++|    .|+++||++.|||++ .+|.  ..|.+|+++++|+++||.||+ |++......     
T Consensus        51 ~~t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~  124 (287)
T TIGR02177        51 FHGLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK  124 (287)
T ss_pred             cccccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence            335689999999999998    589999999999995 3553  238999999999999999998 776432110     


Q ss_pred             ---c----------CCCccHhhhcCCc--ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         91 ---S----------SASTDYYTRGDYI--PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        91 ---~----------~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                         .          ..++++.++|.|+  .+.. ...++.++.+++++|+    +.+||+|||+.+
T Consensus       125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al----~~~GpslIeV~~  185 (287)
T TIGR02177       125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAI----NHKGYALVDILQ  185 (287)
T ss_pred             CcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence               0          0134455666554  3333 2357888877777776    468999999975

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=99.48  E-value=4.1e-13  Score=133.21  Aligned_cols=114  Identities=23%  Similarity=0.153  Sum_probs=86.4

Q ss_pred             CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCC-CcceeeccccCCCcc
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNG-YGMGTSAERSSASTD   96 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~-~~~~~~~~~~~~~~d   96 (355)
                      .|+||+++|+|+|+++|    .|+++|||+.|||++.+..  .+|.+++++++ |+++||.||+ |+............|
T Consensus       220 ~GsMG~a~p~AlG~ala----~p~r~Vv~i~GDGsflm~~--~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d  293 (361)
T TIGR03297       220 VGSMGHASQIALGLALA----RPDQRVVCLDGDGAALMHM--GGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLD  293 (361)
T ss_pred             echhhhHHHHHHHHHHH----CCCCCEEEEEChHHHHHHH--HHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCC
Confidence            59999999999999998    4789999999999975432  34889999996 7999999998 654322222223578


Q ss_pred             Hhhhc--CCc-ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         97 YYTRG--DYI-PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        97 ~~~~A--~G~-~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |.+.|  +|+ .+++|+  +.+++.+++++++    +.++|+|||+.+...
T Consensus       294 ~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~----~~~gp~lIeV~v~~g  338 (361)
T TIGR03297       294 FAQIAKACGYAKVYEVS--TLEELETALTAAS----SANGPRLIEVKVRPG  338 (361)
T ss_pred             HHHHHHHCCCceEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCC
Confidence            88874  686 466764  6888877777764    457899999998643

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=99.46  E-value=3.7e-13  Score=129.63  Aligned_cols=113  Identities=22%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             CcccccchHHHHHHHHHHHhcCCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-------
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE-------   89 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~-------   89 (355)
                      .++||.++|+|+|+++|    .|+++||++.|||+ ++.|.-  .|.+|+++++|+++||.||+ |++.....       
T Consensus        68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~~--eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g  141 (286)
T PRK11867         68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGGN--HFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG  141 (286)
T ss_pred             hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCHH--HHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence            38999999999999998    58999999999996 666542  38899999999999999998 77643211       


Q ss_pred             cc-----C----CCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         90 RS-----S----ASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        90 ~~-----~----~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      ..     .    ...|+.++|  .|+..+ ++...++.++.+++++|+    +.++|+|||+.+
T Consensus       142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al----~~~Gp~lIev~~  201 (286)
T PRK11867        142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI----NHKGFSFVEILQ  201 (286)
T ss_pred             cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence            00     0    124666665  466655 334457888877777766    468999999975

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.45  E-value=6.6e-13  Score=127.34  Aligned_cols=116  Identities=24%  Similarity=0.308  Sum_probs=87.5

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcc-cccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecccc--
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDG-ASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERS--   91 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDG-a~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~--   91 (355)
                      ....+++|.++|+|+|+++|    .|+++||++.||| ++..|.  ..|.+|+++++|+++||.||+ |++...+...  
T Consensus        55 ~~~~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t  128 (279)
T PRK11866         55 YGIHGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTT  128 (279)
T ss_pred             CCcccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCC
Confidence            34578899999999999998    5899999999999 576664  238999999999999999998 7764311100  


Q ss_pred             --------C--C----CccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         92 --------S--A----STDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        92 --------~--~----~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                              .  .    ..|+.+.|  +|++.+ +.+..++.++.+++++|+    +.+||+|||+..
T Consensus       129 ~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al----~~~Gps~I~v~~  191 (279)
T PRK11866        129 PRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAI----KHKGFSFIDVLS  191 (279)
T ss_pred             CCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence                    0  0    12777764  688766 445568888877777766    468999999975

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=99.45  E-value=1.2e-12  Score=141.43  Aligned_cols=129  Identities=21%  Similarity=0.134  Sum_probs=108.1

Q ss_pred             ccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceee
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTS   87 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~   87 (355)
                      ...+++||.|++.|+|.|++.|+       ...+..|+|++|||.+.||+.||++.+|++++|. +++||..|...+..+
T Consensus       191 ~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~  270 (891)
T PRK09405        191 QFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGP  270 (891)
T ss_pred             ecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCc
Confidence            34569999999999999999984       4457899999999999999999999999999998 999999999888766


Q ss_pred             ccccCC-CccHhhh--cCCcceEEE--------------------------e----------------------------
Q psy14560         88 AERSSA-STDYYTR--GDYIPGIWV--------------------------D----------------------------  110 (355)
Q Consensus        88 ~~~~~~-~~d~~~~--A~G~~~~~V--------------------------d----------------------------  110 (355)
                      +..... ..++.++  |+||.++.|                          |                            
T Consensus       271 v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~l  350 (891)
T PRK09405        271 VRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKAL  350 (891)
T ss_pred             cccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHH
Confidence            654221 2455554  789999999                          4                            


Q ss_pred             ---------------CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCC
Q psy14560        111 ---------------GMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGH  147 (355)
Q Consensus       111 ---------------G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GH  147 (355)
                                     |||+.+|++|+..|.+.   .++|++|.+.|...+|.
T Consensus       351 v~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~  399 (891)
T PRK09405        351 VADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGM  399 (891)
T ss_pred             HhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCCEEEEEeceecCCC
Confidence                           99999999999877642   36799999999988876

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=99.45  E-value=6.1e-13  Score=125.33  Aligned_cols=120  Identities=28%  Similarity=0.349  Sum_probs=85.1

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc-------
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER-------   90 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~-------   90 (355)
                      +.|+-+.++++|+|.|.|+.+.+++..||+++||||+..|+.+||||.|...+-++|+|++||+++|+.....       
T Consensus       109 ~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~  188 (270)
T PF13292_consen  109 GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSK  188 (270)
T ss_dssp             --SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---
T ss_pred             cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHh
Confidence            4589999999999999999999999999999999999999999999999999999999999999888643210       


Q ss_pred             cCCC--------------------ccHhhh--------------cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCe
Q psy14560         91 SSAS--------------------TDYYTR--------------GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPL  135 (355)
Q Consensus        91 ~~~~--------------------~d~~~~--------------A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~  135 (355)
                      ....                    ..+.++              ..|+.++ .|||+|..++.++++.    +++-++|+
T Consensus       189 l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~----~K~~~gPv  264 (270)
T PF13292_consen  189 LRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLEN----AKDIDGPV  264 (270)
T ss_dssp             ----------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHH----HCCSSSEE
T ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHH----HhcCCCCE
Confidence            0000                    001111              1267776 8999999887766655    55679999


Q ss_pred             EEEEEe
Q psy14560        136 VLEVVT  141 (355)
Q Consensus       136 lIev~t  141 (355)
                      ||++.|
T Consensus       265 llHV~T  270 (270)
T PF13292_consen  265 LLHVIT  270 (270)
T ss_dssp             EEEEE-
T ss_pred             EEEEeC
Confidence            999976

>PRK05261 putative phosphoketolase; Provisional

Probab=99.44  E-value=7.7e-13  Score=141.19  Aligned_cols=133  Identities=17%  Similarity=0.207  Sum_probs=107.9

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHH---HHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQN---FEAYNIAKLWGIP-CIYVCENNGYGMG   85 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~---~EaL~~Aa~~~LP-vi~Vv~NN~~~~~   85 (355)
                      |...++....|.||++++.|+|+|+.    +++..|+|++|||++++|.+   |++.+++..+++. |+.|+.+|+|+++
T Consensus       132 ~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is  207 (785)
T PRK05261        132 PETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIA  207 (785)
T ss_pred             CCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCC
Confidence            55678888899999999999999975    57899999999999999874   7777777777776 7788889999999


Q ss_pred             eeccccC-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHH-----------HcC---CCCe--EEEEEeeeeCC
Q psy14560         86 TSAERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYA-----------SSG---KGPL--VLEVVTYRYSG  146 (355)
Q Consensus        86 ~~~~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~a-----------r~~---~gP~--lIev~t~R~~G  146 (355)
                      .+..... ...++.++  |+|++.+.|||+|+.++.+++++|++.+           |.+   .+|.  +|.++|....|
T Consensus       208 ~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g  287 (785)
T PRK05261        208 NPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWT  287 (785)
T ss_pred             CCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCC
Confidence            8877543 34677775  6899999999999999998876666543           334   5899  99999986544

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=99.40  E-value=1.7e-12  Score=133.28  Aligned_cols=129  Identities=26%  Similarity=0.289  Sum_probs=102.8

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHH-HcCCCEEEEEEeCCCcceeeccc------
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK-LWGIPCIYVCENNGYGMGTSAER------   90 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa-~~~LPvi~Vv~NN~~~~~~~~~~------   90 (355)
                      ..|+-+.++++|+|+|.|+.+.+.++.||+++||||++-|+.+||||.|. ..+-|+|+|++||+++|+.+...      
T Consensus       113 ~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~  192 (627)
T COG1154         113 GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLA  192 (627)
T ss_pred             ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHH
Confidence            45889999999999999999999999999999999999999999999998 55578999999999998754321      


Q ss_pred             -cCCC------------------c---cHhhh----------------cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcC
Q psy14560         91 -SSAS------------------T---DYYTR----------------GDYIPGI-WVDGMDVLAVREASKFAVNYASSG  131 (355)
Q Consensus        91 -~~~~------------------~---d~~~~----------------A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~  131 (355)
                       ....                  +   ++.++                ..|+.++ .+||||.+++..+++.    +++.
T Consensus       193 ~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~----~kd~  268 (627)
T COG1154         193 RLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKN----AKDL  268 (627)
T ss_pred             HHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHH----HhcC
Confidence             0000                  0   11111                1266766 8899999988777665    5567


Q ss_pred             CCCeEEEEEeeeeCCCCCC
Q psy14560        132 KGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus       132 ~gP~lIev~t~R~~GHs~~  150 (355)
                      ++|+|+++.|...+|+..+
T Consensus       269 ~gPvllHv~T~KGKGY~pA  287 (627)
T COG1154         269 KGPVLLHVVTKKGKGYKPA  287 (627)
T ss_pred             CCCEEEEEEecCCCCCChh
Confidence            9999999999999988764

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.37  E-value=5.6e-12  Score=121.82  Aligned_cols=124  Identities=16%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCC-CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTG-GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS   91 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~-~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~   91 (355)
                      .+++..+.++|.++|+|.|+++|.+..+++ ..|++++|||++..+.+ |+|+.|+.+++|+++||.||++.++|-....
T Consensus        62 ~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S  140 (300)
T PRK11864         62 LTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRS  140 (300)
T ss_pred             ccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCC
Confidence            355666789999999999999998876554 45666999999877765 9999999999999999999997654322111


Q ss_pred             -----------------CCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         92 -----------------SASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        92 -----------------~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                                       ...-|+.++  +.|++.+ +++-.|+.++.+++++|++    .+||.+|++..
T Consensus       141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s  206 (300)
T PRK11864        141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA  206 (300)
T ss_pred             CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence                             112355554  5688876 7788899998888888774    68999999865

>KOG4166|consensus

Probab=99.35  E-value=8.6e-13  Score=130.26  Aligned_cols=129  Identities=21%  Similarity=0.225  Sum_probs=103.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      |+|....|+++..+|+.|+||+++|+|||+..|    .|+.+||-+-||+++.+. +.| |.++.+.++||.+++.||. 
T Consensus       507 qfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNee  580 (675)
T KOG4166|consen  507 QFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEE  580 (675)
T ss_pred             HHhcccCccceeecCCccccccCcchhhccccc----CcccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchh
Confidence            677888999999999999999999999999988    699999999999998764 233 9999999999999999998 


Q ss_pred             Ccceeecc----------ccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAE----------RSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~----------~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      .|+.+.+.          ...-+|+|.++|  .|+++.+|..  -+++    +++++...+.+||+|+|+.+..
T Consensus       581 qGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV~K--~edL----~~k~keflsTkGPvLleV~v~~  648 (675)
T KOG4166|consen  581 QGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRVTK--KEDL----REKIKEFLSTKGPVLLEVIVPH  648 (675)
T ss_pred             hhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchheeeh--HHHH----HHHHHHHhCCCCCeEEEEEccC
Confidence            56644321          112368999884  6999999974  3444    4455555678999999998753

>KOG1185|consensus

Probab=99.33  E-value=9.5e-12  Score=124.64  Aligned_cols=129  Identities=21%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC--
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG--   81 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~--   81 (355)
                      .++...|+.+.-.|.+|+||-|++.|+++|++    .|++.|+|+.||++++... .| +.|+++|+|||++||.||+  
T Consensus       414 ~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfSa-ME-~ET~vR~~Lpvv~vV~NN~Gi  487 (571)
T KOG1185|consen  414 LLPPRGPRRRLDAGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFSA-ME-LETFVRYKLPVVIVVGNNNGI  487 (571)
T ss_pred             hccCCCcccccCCccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcch-hh-HHHHHHhcCCeEEEEecCCcc
Confidence            34567788888888999999999999998887    5999999999999986643 33 8899999999999998765  


Q ss_pred             CcceeeccccC---------------CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAERSS---------------ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~~~~---------------~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ||.......+.               .+.+|.+.  |+|..++.|+  .++++..+++++.+   .+++|+||++...+
T Consensus       488 yg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p  561 (571)
T KOG1185|consen  488 YGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP  561 (571)
T ss_pred             cccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence            66644322111               12345443  6799999998  68888888887764   46799999998754

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.31  E-value=1e-11  Score=130.83  Aligned_cols=116  Identities=16%  Similarity=0.052  Sum_probs=86.4

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc-----
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER-----   90 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~-----   90 (355)
                      ..+++||+++|.|+|+++|    .|+++||+++|||++...... +|.+|+++++|+++||.||+ |++......     
T Consensus       400 ~~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~~-eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~  474 (595)
T TIGR03336       400 DTTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGIP-GLINAVYNKANITVVILDNRITAMTGHQPNPGTGV  474 (595)
T ss_pred             ceeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCHH-HHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCC
Confidence            3468999999999999988    578999999999998653223 48899999999999999887 776432111     


Q ss_pred             -----cCCCccHhhh--cCCcceEEEeCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         91 -----SSASTDYYTR--GDYIPGIWVDGM-DVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        91 -----~~~~~d~~~~--A~G~~~~~VdG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                           ...++||.+.  ++|+++.+|+.. |..++.+++++++    +.++|++|++..
T Consensus       475 ~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~----~~~gp~li~v~~  529 (595)
T TIGR03336       475 TGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAAL----AAEGVSVIIAKQ  529 (595)
T ss_pred             CCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHH----hcCCCEEEEEcc
Confidence                 1124678876  479999988653 4455566666655    468999999864

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=99.31  E-value=5.6e-12  Score=145.72  Aligned_cols=127  Identities=15%  Similarity=0.083  Sum_probs=94.9

Q ss_pred             cccccCCCCCc-cccCCccccc--chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHc--CCCEEEEEE
Q psy14560          4 CMIVINPSPKN-FYGGNGIVGA--QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW--GIPCIYVCE   78 (355)
Q Consensus         4 ~~~~~~p~~~~-~~~~~g~lG~--~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~--~LPvi~Vv~   78 (355)
                      +++...|+... +.++.|+||+  ++|.|+|+++|.     +++|+|++|||++.+..  .+|.||+++  ++|+++||.
T Consensus       742 ~~~~~~p~~~i~~~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~~--~EL~Ta~r~~~~lpi~iVV~  814 (1655)
T PLN02980        742 MLSAELPCQWIQVAGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHDT--NGLSILSQRIARKPMTILVI  814 (1655)
T ss_pred             ccccccccccceEEecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhhh--hHHHHhhcccCCCCEEEEEE
Confidence            34456676666 3678899999  599999999883     78999999999986642  349999984  999999999


Q ss_pred             eCC-Ccceeec------c-----c---cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         79 NNG-YGMGTSA------E-----R---SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        79 NN~-~~~~~~~------~-----~---~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      ||+ |++....      .     .   ...++||.+.  |+|+++.+|+  +++++.+++++|.    +.++|+||||.|
T Consensus       815 NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t  888 (1655)
T PLN02980        815 NNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVES  888 (1655)
T ss_pred             eCCCcHhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEec
Confidence            988 5553211      0     0   0124688886  4799999997  5777777666555    468999999999


Q ss_pred             ee
Q psy14560        142 YR  143 (355)
Q Consensus       142 ~R  143 (355)
                      .|
T Consensus       889 ~~  890 (1655)
T PLN02980        889 SI  890 (1655)
T ss_pred             Ch
Confidence            65

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.26  E-value=2.8e-11  Score=128.14  Aligned_cols=126  Identities=19%  Similarity=0.232  Sum_probs=98.5

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee--------cc
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS--------AE   89 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~--------~~   89 (355)
                      +.|+-+.++++|+|+|.|+.+.+.+..||+++||||++.|+.+|+||.|...+-++|+|++||+++++.+        ..
T Consensus       187 ~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG  266 (701)
T PLN02225        187 GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASIS  266 (701)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccc
Confidence            4589999999999999999999999999999999999999999999999999999999999999998766        11


Q ss_pred             cc-------CCC-----------------c----cH-hh-----------------hcCCcceE-EEeCCCHHHHHHHHH
Q psy14560         90 RS-------SAS-----------------T----DY-YT-----------------RGDYIPGI-WVDGMDVLAVREASK  122 (355)
Q Consensus        90 ~~-------~~~-----------------~----d~-~~-----------------~A~G~~~~-~VdG~D~~~v~~a~~  122 (355)
                      ..       ..+                 +    .+ .+                 ...|+.++ .|||||.+++.++++
T Consensus       267 ~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~  346 (701)
T PLN02225        267 ALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLR  346 (701)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHH
Confidence            00       000                 0    00 00                 01266666 889999999888877


Q ss_pred             HHHHHHHcCCCCeEEEEEeeeeC
Q psy14560        123 FAVNYASSGKGPLVLEVVTYRYS  145 (355)
Q Consensus       123 ~Al~~ar~~~gP~lIev~t~R~~  145 (355)
                      ++.+.  ...+|+||++.|...+
T Consensus       347 ~~k~~--~~~~PvlvHv~T~KGk  367 (701)
T PLN02225        347 EVSSL--DSMGPVLVHVITEENR  367 (701)
T ss_pred             HHHcC--CCCCCEEEEEEecCCC
Confidence            76432  1249999999997443

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=99.25  E-value=2.5e-12  Score=124.74  Aligned_cols=102  Identities=25%  Similarity=0.374  Sum_probs=83.2

Q ss_pred             chhHHHHHHHH-------hhhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccCCCCC
Q psy14560        159 PITSFKEKMLN-------SELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGK  231 (355)
Q Consensus       159 pIr~fee~Li~-------~Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~  231 (355)
                      .+++|++.+..       .|++....+||+.+++...+++++||++++||+|+..+++|+++.++|++++|+..      
T Consensus         5 ~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~------   78 (300)
T PF00676_consen    5 LIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAK------   78 (300)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTT------
T ss_pred             HHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCccc------
Confidence            45777776543       23578888999999999999999999999999999999999999999999999984      


Q ss_pred             CCCCcccccCCCCcccc---CCc--ccccccccccCCchhhhhhhhhccc
Q psy14560        232 GPISWECCAKGKGGSMH---MYA--KNFYGGNGIVGAQTLKSLLKSISGR  276 (355)
Q Consensus       232 ~~~~w~~~~~G~gg~~h---~~~--~~~~~~~~~vg~~~~~a~~~~~~~~  276 (355)
                                |.||++|   ..+  .+|++.++|||+|+|+|+....|.+
T Consensus        79 ----------g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k  118 (300)
T PF00676_consen   79 ----------GHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIK  118 (300)
T ss_dssp             ----------STTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHH
T ss_pred             ----------CCCCCccccccccccceeeeccccccccCccccchhHhhh
Confidence                      5555566   334  4699999999999999998755543

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=99.23  E-value=3.6e-12  Score=125.71  Aligned_cols=102  Identities=23%  Similarity=0.220  Sum_probs=86.9

Q ss_pred             cee--cchhHHHHHHHH---h---hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---S---ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~---Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      +||  -.+|.|++++.+   +   |++....+||+++++.+.+|+++||++++||+|++.+++|+++..+|++++|+.+|
T Consensus        29 ~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g  108 (341)
T TIGR03181        29 LYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERG  108 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcC
Confidence            466  456999998765   2   35677788999999999999999999999999999999999999999999998876


Q ss_pred             CCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhcc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      .+.                   ..++|++|.+++||+|+|.|+.-.++.
T Consensus       109 ~~~-------------------~~~~~~~g~~~~vG~~lp~AiGaAla~  138 (341)
T TIGR03181       109 SWD-------------------PEGVNILPPNIPIGTQYLHAAGVAYAL  138 (341)
T ss_pred             CCC-------------------chhcCccCCCchHhcchhHHHhHHHHH
Confidence            421                   134799999999999999999886554

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=99.21  E-value=1.8e-11  Score=118.07  Aligned_cols=152  Identities=26%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY   82 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~   82 (355)
                      |+++++.|+.+...+..|++||.+|+|+|...|    .|++.+|++.||-.++.  ..|.|...++++||.|+|+.||.|
T Consensus       402 qflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfqf--mieelavgaq~k~pyihv~vnnay  475 (592)
T COG3960         402 QFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQF--LIEELAVGAQFKIPYIHVLVNNAY  475 (592)
T ss_pred             hhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHHH--HHHHHhhhhcccCceEEEEecchH
Confidence            789999999999999999999999999999876    69999999999999876  568899999999999999999996


Q ss_pred             -cceeeccc--------cCC------------CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         83 -GMGTSAER--------SSA------------STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        83 -~~~~~~~~--------~~~------------~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                       |......+        +..            ..|..+.  +.|++.++|-  ++.++..|+++|..-+.+..-|+++|+
T Consensus       476 lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~  553 (592)
T COG3960         476 LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEV  553 (592)
T ss_pred             HHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeeh
Confidence             33221111        110            1122222  3478889986  688999999999888888999999999


Q ss_pred             EeeeeCCCCCCCCCcceecchhHHHHH
Q psy14560        140 VTYRYSGHSMSDPGTSFRDPITSFKEK  166 (355)
Q Consensus       140 ~t~R~~GHs~~D~~~~YRDpIr~fee~  166 (355)
                      ...|...-++...-    |-+..|++.
T Consensus       554 ilervtnismgtei----~~v~efedl  576 (592)
T COG3960         554 ILERVTNISMGTEI----DNVMEFEDL  576 (592)
T ss_pred             HHHHhhcccccchh----hhhhhHHHH
Confidence            88877655554321    566667653

>KOG1182|consensus

Probab=99.02  E-value=1.1e-10  Score=111.46  Aligned_cols=90  Identities=20%  Similarity=0.237  Sum_probs=83.1

Q ss_pred             hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhcccccCCCCCCCCCcccccCCCCccccCCc
Q psy14560        172 LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGSMHMYA  251 (355)
Q Consensus       172 l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~~~~G~gg~~h~~~  251 (355)
                      +|...-++|+..++.+++|++.|.|++.||+-|..+|||.++..++.+.+|+..+..|            ||++|+|+..
T Consensus       116 FYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gk------------GrQMPvHyGs  183 (432)
T KOG1182|consen  116 FYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGK------------GRQMPVHYGS  183 (432)
T ss_pred             EEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCcccccc------------ccccccccCc
Confidence            4667778999999999999999999999999999999999999999999999998876            9999999986


Q ss_pred             --ccccccccccCCchhhhhhhhh
Q psy14560        252 --KNFYGGNGIVGAQTLKSLLKSI  273 (355)
Q Consensus       252 --~~~~~~~~~vg~~~~~a~~~~~  273 (355)
                        .||+..++|+.+|+|+||.-.+
T Consensus       184 ~elnf~tissplatqlpqAvGaaY  207 (432)
T KOG1182|consen  184 KELNFVTISSPLATQLPQAVGAAY  207 (432)
T ss_pred             cccceEEecchhhhccchhhhhhh
Confidence              6999999999999999996533

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.02  E-value=9.9e-09  Score=99.40  Aligned_cols=123  Identities=19%  Similarity=0.104  Sum_probs=93.2

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE-   89 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~-   89 (355)
                      +.+....+.+|.+.+.|.|++.|.+..+++..||++.|||++ ..|.  ++|.-|...+.++++||.||. |+.+.-+. 
T Consensus        62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~--~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S  139 (299)
T PRK11865         62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF--QSLSGAMERGHNILYLMYDNEAYMNTGIQRS  139 (299)
T ss_pred             cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH--HHHHHHHHcCCCeEEEEECCccccCCCCCCC
Confidence            445566788999999999999998776778899999999995 4443  668899999999999999998 65421110 


Q ss_pred             ---------------c-----cCCCccHhhhc--CCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         90 ---------------R-----SSASTDYYTRG--DYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        90 ---------------~-----~~~~~d~~~~A--~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                                     .     .....|+..++  .|++++ +++-.++.++.+++++|++    .+||.||++..
T Consensus       140 ~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s  210 (299)
T PRK11865        140 GSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ  210 (299)
T ss_pred             CCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence                           0     11123566554  788877 6677799998888887764    68999999964

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=99.00  E-value=1.1e-09  Score=109.50  Aligned_cols=131  Identities=17%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             CCccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeC
Q psy14560          1 MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN   80 (355)
Q Consensus         1 ~~~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN   80 (355)
                      +|+.|+...|.+..+.-++++||+-+..++|+++|    .|++.|++++||||..+  .+..|.|+..++..+++|+.||
T Consensus       425 LhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN  498 (617)
T COG3962         425 LHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDN  498 (617)
T ss_pred             HHHHhccCCCCceeeeecccccccccccccccccC----CCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECC
Confidence            35678888898888888999999999999998855    78999999999999765  4556999999999999999988


Q ss_pred             C-Ccceeec------------------cccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         81 G-YGMGTSA------------------ERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        81 ~-~~~~~~~------------------~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      . ||-..+.                  +......||++.|  +|+...+|.  +.+++    +.|++.+++..+++||++
T Consensus       499 ~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL----~aAL~~Ak~~~~ttvi~I  572 (617)
T COG3962         499 RGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEEL----EAALADAKASDRTTVIVI  572 (617)
T ss_pred             CCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHH----HHHHHHHHhCCCCEEEEE
Confidence            6 6532111                  0123446888864  699999996  56665    455566677899999999


Q ss_pred             Eeee
Q psy14560        140 VTYR  143 (355)
Q Consensus       140 ~t~R  143 (355)
                      .|..
T Consensus       573 ~t~P  576 (617)
T COG3962         573 DTDP  576 (617)
T ss_pred             ecCC
Confidence            8864

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=98.88  E-value=5.7e-09  Score=105.96  Aligned_cols=117  Identities=21%  Similarity=0.228  Sum_probs=78.2

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccccC-C
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAERSS-A   93 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~~~-~   93 (355)
                      .+-+|++|+.+|+++|+++|.    +++.+|.|+||||++.. +.| +.+-.+++|| +|||++||+|-+........ +
T Consensus       407 Q~lWGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~  480 (557)
T COG3961         407 QPLWGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAP  480 (557)
T ss_pred             ccchhhcccccHhhhhhhhcC----CCccEEEEEcCchhhhh-HHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcC
Confidence            446899999999999999995    78999999999998774 344 8889999997 66666777787755433211 1


Q ss_pred             -----CccHhhh--cCC---cce-EEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         94 -----STDYYTR--GDY---IPG-IWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        94 -----~~d~~~~--A~G---~~~-~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                           .=|+.++  ++|   ... .++.  ..+++..+++.+.+   ..+++.+|||...+
T Consensus       481 YNdI~~Wd~~~l~~afg~~~~~~~~~~~--~~~~l~~~~~~~~~---~~~~i~lIEv~lp~  536 (557)
T COG3961         481 YNDIQSWDYTALPEAFGAKNGEAKFRAT--TGEELALALDVAFA---NNDRIRLIEVMLPV  536 (557)
T ss_pred             cccccccchhhhhhhcCCCCceEEEeec--ChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence                 1134443  444   333 3443  23344444444332   35689999998864

>KOG1184|consensus

Probab=98.44  E-value=1.3e-06  Score=88.92  Aligned_cols=117  Identities=22%  Similarity=0.184  Sum_probs=78.2

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccccC--
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAERSS--   92 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~~~--   92 (355)
                      ...+|++|+.+|+++|+++|.    ++++|+.|+|||+++... .| +.++.+++|| ++|++.||+|-+........  
T Consensus       411 q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlTv-Qe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn  484 (561)
T KOG1184|consen  411 QMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLTV-QE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN  484 (561)
T ss_pred             EEEEeeccccchhhhhhhhcc----CCceEEEEecCccceeeH-HH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence            446799999999999999995    679999999999987753 44 8899999999 45555555687754332211  


Q ss_pred             --CCccHhhh--cCC-----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         93 --ASTDYYTR--GDY-----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        93 --~~~d~~~~--A~G-----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                        .+=||.++  |+|     ....+|-  ...+..++.+.+..  .+.++|.+|||...
T Consensus       485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l~  539 (561)
T KOG1184|consen  485 DIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVILP  539 (561)
T ss_pred             ccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEecC
Confidence              11245443  442     3334442  23355566666552  24567999999874

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=98.15  E-value=1.6e-06  Score=82.74  Aligned_cols=92  Identities=12%  Similarity=0.050  Sum_probs=76.7

Q ss_pred             hhhhhhhHHHHHHhhHHHhhcc------ccccccc-cccccceee--cCCCHHHHHHHHhcccc---cCCCCCCCCCccc
Q psy14560        171 ELATVDELKEACAVGMRAVMRE------QDSIISA-YRVHGWTYL--MGVSVFGVLSELTGRRT---GCAKGKGPISWEC  238 (355)
Q Consensus       171 Gl~t~~e~qEa~qvg~~~al~~------~D~v~~~-yR~~~~~~~--~g~~~~~~~~~~~g~~~---g~~~~~~~~~w~~  238 (355)
                      +.++ .+++|....+...+++.      .|++++. ||++...|+  .|.|+.++|+|++|+.+   +.+.         
T Consensus        13 krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~---------   82 (265)
T cd02016          13 KRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEG---------   82 (265)
T ss_pred             eEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCC---------
Confidence            3344 78899999998888887      6999999 999999999  99999999999999876   4332         


Q ss_pred             ccCCCCccccCCc-------------ccccccccccCCchhhhhhhhhcc
Q psy14560        239 CAKGKGGSMHMYA-------------KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       239 ~~~G~gg~~h~~~-------------~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                         |++.++|+..             .++++.+++||+|+|+|+....|.
T Consensus        83 ---~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~  129 (265)
T cd02016          83 ---SGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAK  129 (265)
T ss_pred             ---CCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHH
Confidence               7788888853             267899999999999999874443

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]

Probab=98.13  E-value=3.6e-05  Score=74.71  Aligned_cols=115  Identities=22%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Cccee-------e
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGT-------S   87 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~-------~   87 (355)
                      ...+.-|-.++.|.|+.+|.    ++..||++.|||. ...|--+  |.-+.+.+..|++||.||. |+.+.       +
T Consensus        67 ~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp  140 (294)
T COG1013          67 WVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTTP  140 (294)
T ss_pred             ceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence            34567788999999999985    6779999999996 5666433  7778889999999999998 66532       1


Q ss_pred             cc---------ccC-CCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         88 AE---------RSS-ASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        88 ~~---------~~~-~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      ..         ... ..-|...+  ++|.+++ ++.--++.++.+.+++|++    .+||.||++-+
T Consensus       141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~s  203 (294)
T COG1013         141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLS  203 (294)
T ss_pred             CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEec
Confidence            11         100 11144444  4687766 6666678888777777665    57999999864

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=98.03  E-value=1.3e-05  Score=78.85  Aligned_cols=98  Identities=21%  Similarity=0.364  Sum_probs=62.7

Q ss_pred             CcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-----C-----EEEEEEeCCCcceeec
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-----P-----CIYVCENNGYGMGTSA   88 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-----P-----vi~Vv~NN~~~~~~~~   88 (355)
                      -|-||++++.|.|+++-    +||-+|+|++|||.+.+|.      +|+.|..     |     |+=|+.=|+|-|+.++
T Consensus       139 GGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pT  208 (379)
T PF09364_consen  139 GGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDGAVLPILHLNGYKISNPT  208 (379)
T ss_dssp             -SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-
T ss_pred             CcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCc------ccccccccceeCcccCceeeceEEecCccccCCe
Confidence            47789999999888875    6999999999999998875      3444421     2     6666666999887654


Q ss_pred             ccc-CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHH
Q psy14560         89 ERS-SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVN  126 (355)
Q Consensus        89 ~~~-~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~  126 (355)
                      -.. .+..++.+.  ++|+..+.|+|.|+.++...+..+++
T Consensus       209 il~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald  249 (379)
T PF09364_consen  209 ILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALD  249 (379)
T ss_dssp             HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHH
T ss_pred             EeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHH
Confidence            321 122344443  68999999999999888765544443

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=98.02  E-value=5.6e-06  Score=90.96  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHh------hcccccccc-ccccccceee--cCCCHHHHHHHHhccc-
Q psy14560        158 DPITSFKEKMLNS---ELATVDELKEACAVGMRAV------MREQDSIIS-AYRVHGWTYL--MGVSVFGVLSELTGRR-  224 (355)
Q Consensus       158 DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~a------l~~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~~g~~-  224 (355)
                      -.++.||+.|.+.   +-.-..+++|+...+...+      +...|++++ +||+|+..|+  +|.|+..+|+|++|+. 
T Consensus       199 ~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~  278 (924)
T PRK09404        199 TAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHG  278 (924)
T ss_pred             HHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCC
Confidence            3458898888662   1122478899999888774      447799999 6999999999  5999999999999986 


Q ss_pred             ------ccCCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhcc
Q psy14560        225 ------TGCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       225 ------~g~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                            +|..|  --+.......|+||+||+....   ..+++|++.|+|+....|.
T Consensus       279 ~~~~~~~Gdvk--yHlG~~~~~~g~gg~mhi~l~~---npShleav~Pva~G~A~A~  330 (924)
T PRK09404        279 PDEVLGSGDVK--YHLGFSSDRETDGGEVHLSLAF---NPSHLEIVNPVVEGSVRAR  330 (924)
T ss_pred             CCCCCCCCCcc--cccCccccccCCCCeeEeeccC---CccccccccCeehhHHHHH
Confidence                  22221  0011111123889999986532   3388999999999875543

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=97.94  E-value=0.00013  Score=76.88  Aligned_cols=63  Identities=19%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             CcccccchHHHHHHHHHHHhc-------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         19 NGIVGAQVPLGTGIAFAAQYK-------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        19 ~g~lG~~lp~AiGaA~A~k~~-------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      +.+||-|.-.|+=.|.-.|+-       .++..|+||+|||.+.+++..+++..|++++|. ++|||+=|.
T Consensus       191 TvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNl  261 (887)
T COG2609         191 TVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNL  261 (887)
T ss_pred             cccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecch
Confidence            467888887888777777663       368899999999999999999999999999998 888888664

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=97.51  E-value=0.00038  Score=72.89  Aligned_cols=113  Identities=23%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeecccc---
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERS---   91 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~---   91 (355)
                      ..+-.||.++++|-|++++.     .+.+|+++|||.+ ..|.  .+|..|+..+.+++++|.+|.+ +|+..+..-   
T Consensus       425 d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~  497 (640)
T COG4231         425 DTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTG  497 (640)
T ss_pred             hhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcc
Confidence            34456888888888888763     3889999999995 5554  3488899999999999999996 443221110   


Q ss_pred             -------CCCccHhh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560         92 -------SASTDYYT--RGDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus        92 -------~~~~d~~~--~A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~  140 (355)
                             ....++.+  ++.|+..+ +||-.|..++.+++++|+    +..+|.+|-..
T Consensus       498 ~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keal----e~~gpsViiak  552 (640)
T COG4231         498 VAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEAL----EVPGPSVIIAK  552 (640)
T ss_pred             cccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHh----cCCCceEEEEc
Confidence                   01122333  35677766 445567777666666655    57889998764

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes

Probab=97.26  E-value=0.0019  Score=64.28  Aligned_cols=93  Identities=13%  Similarity=0.057  Sum_probs=63.2

Q ss_pred             CeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Cccee-------ecc---------ccCCCccHhhh--cC
Q psy14560         43 GVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGT-------SAE---------RSSASTDYYTR--GD  102 (355)
Q Consensus        43 ~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~-------~~~---------~~~~~~d~~~~--A~  102 (355)
                      ..||++.|||. ...|--  .|.-|...+.+|++||.||. |+.+.       +..         .....-|+...  ++
T Consensus       152 ~~v~v~gGDG~~ydIG~~--~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~  229 (365)
T cd03377         152 KSVWIIGGDGWAYDIGYG--GLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY  229 (365)
T ss_pred             cceEEEecchhhhccchh--hHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence            58999999997 345432  26667778999999999998 66531       111         11112345444  46


Q ss_pred             CcceE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560        103 YIPGI-WVD-GMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus       103 G~~~~-~Vd-G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |.+++ ++. +.++.++.+++++|++    .+||.+|++-.
T Consensus       230 g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s  266 (365)
T cd03377         230 GNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS  266 (365)
T ss_pred             CCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence            87776 554 3588888888888774    59999999965

This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=96.85  E-value=0.00094  Score=70.68  Aligned_cols=83  Identities=11%  Similarity=-0.039  Sum_probs=65.9

Q ss_pred             hhhhhhHHHHHHhhHHHhhc---cccccc--cccccccceeecCCCHHHHHHHHhcccccCCCCCCCCCcccccCCCCcc
Q psy14560        172 LATVDELKEACAVGMRAVMR---EQDSII--SAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECCAKGKGGS  246 (355)
Q Consensus       172 l~t~~e~qEa~qvg~~~al~---~~D~v~--~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~~~~~~w~~~~~G~gg~  246 (355)
                      .+.+.-++  ++.+.+..+.   +.|+++  +.||+|++.+.+|.++...+.+++|+.+|+++            +++ |
T Consensus        41 h~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~------------~~~-s  105 (581)
T PRK12315         41 HVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTN------------PEE-S  105 (581)
T ss_pred             CcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCC------------CCC-C
Confidence            45555556  5555566666   789999  99999999999999999999999999999987            777 4


Q ss_pred             ccCCcccccccccccCCchhhhhhhhhc
Q psy14560        247 MHMYAKNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       247 ~h~~~~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                      +|..     ..++++|++++.|+.-.+|
T Consensus       106 ~~~~-----~~~g~~~~~ls~A~G~A~A  128 (581)
T PRK12315        106 EHDF-----FTVGHTSTSIALATGLAKA  128 (581)
T ss_pred             CCCC-----cCCCcHHHHHHHHHHHHHH
Confidence            4531     3778899999999875433

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]

Probab=96.83  E-value=0.0024  Score=66.20  Aligned_cols=110  Identities=25%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             cccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeC-CCcceeecc---------cc
Q psy14560         22 VGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN-GYGMGTSAE---------RS   91 (355)
Q Consensus        22 lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN-~~~~~~~~~---------~~   91 (355)
                      +-+.++.|+|++.|.     .+++|.++||=|+-.-.  -+|........|+++|+.|| +-||-....         ..
T Consensus       424 IDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~  496 (566)
T COG1165         424 IDGTVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERL  496 (566)
T ss_pred             cchhHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHh
Confidence            345677899999874     56799999999952110  12445566677866666555 455522111         11


Q ss_pred             C---CCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         92 S---ASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        92 ~---~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      +   ...||...+  ||+.+.+++.  ..++.+++..    +-...|-.|||++|.|-
T Consensus       497 F~tPh~ldF~~la~~y~l~y~~~~s--~~~l~~~~~~----~~~~~g~~viEvkt~r~  548 (566)
T COG1165         497 FGTPHGLDFAHLAATYGLEYHRPQS--WDELGEALDQ----AWRRSGTTVIEVKTDRS  548 (566)
T ss_pred             cCCCCCCCHHHHHHHhCccccccCc--HHHHHHHHhh----hccCCCcEEEEEecChh
Confidence            1   124666654  6888888764  5555554444    44457799999999863

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.0054  Score=65.07  Aligned_cols=100  Identities=16%  Similarity=0.238  Sum_probs=65.9

Q ss_pred             CCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHH----cCCC----EEEEEEeCCC
Q psy14560         11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKL----WGIP----CIYVCENNGY   82 (355)
Q Consensus        11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~----~~LP----vi~Vv~NN~~   82 (355)
                      ...+...--|.||+++..|.|+++=    .||-+++|++|||....|.    +.++-.    ++-+    ++=|..=|+|
T Consensus       144 etPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dGavLPIL~lNGy  215 (793)
T COG3957         144 ETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDGAVLPILHLNGY  215 (793)
T ss_pred             CCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCc----cccccccccccCccccCceeeEEEecce
Confidence            3344444558899999999998874    6999999999999654443    222211    1222    5556666999


Q ss_pred             cceeeccccC-CCccHhhh--cCCcceEEEeCCCHHHHH
Q psy14560         83 GMGTSAERSS-ASTDYYTR--GDYIPGIWVDGMDVLAVR  118 (355)
Q Consensus        83 ~~~~~~~~~~-~~~d~~~~--A~G~~~~~VdG~D~~~v~  118 (355)
                      .|+.+.-... +..++.+.  ++|..-+-|+|.|+.+.-
T Consensus       216 kI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~h  254 (793)
T COG3957         216 KIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMH  254 (793)
T ss_pred             eccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhh
Confidence            9976543222 23344443  679999999998988743

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=96.49  E-value=0.033  Score=47.65  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEe-CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALY-GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI  104 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~-GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~  104 (355)
                      ..+|.|++++    +. ..+++.. |.|..+   ..+.+..|...++|+++++.+........ . .....+.......+
T Consensus        48 ~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~-~-~~q~~~~~~~~~~~  117 (154)
T cd06586          48 AGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAK-Q-TFQSMFDLGMYRSI  117 (154)
T ss_pred             HHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhcc-C-cccccCHHHHHHHh
Confidence            3446666655    33 4444444 888753   34567788888999999997665321111 1 01112222222344


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~  140 (355)
                      +...+--.++.+..+.+.+|++.+...+||++|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip  153 (154)
T cd06586         118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP  153 (154)
T ss_pred             hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence            444333356778888888998888878899999863

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=96.33  E-value=0.022  Score=64.44  Aligned_cols=118  Identities=16%  Similarity=0.005  Sum_probs=78.7

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccc--cC
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAER--SS   92 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~--~~   92 (355)
                      -++..||+....++|.+-.    .+++.||.++|||.+ ..|..  +|.-|+..+.+++++|.+|.. +|+..+..  ..
T Consensus       478 ~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~  551 (1165)
T PRK09193        478 STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGL  551 (1165)
T ss_pred             CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCc
Confidence            4567799999999998775    245779999999994 66653  478888899999999998884 55433221  12


Q ss_pred             CCccHhhh--cCCcceEEEeCCCHHHHHHH--------------HHHHHHHHHcCCCCeEEEEE
Q psy14560         93 ASTDYYTR--GDYIPGIWVDGMDVLAVREA--------------SKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus        93 ~~~d~~~~--A~G~~~~~VdG~D~~~v~~a--------------~~~Al~~ar~~~gP~lIev~  140 (355)
                      +.+++...  |.|+.-+.|-..|+......              ++...+..|+.+|+++|...
T Consensus       552 ~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~  615 (1165)
T PRK09193        552 SVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD  615 (1165)
T ss_pred             chhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence            33555553  67988776654556555332              33333333467888888764

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=96.30  E-value=0.021  Score=64.78  Aligned_cols=113  Identities=19%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             CCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCc
Q psy14560         18 GNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSAST   95 (355)
Q Consensus        18 ~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~   95 (355)
                      ++-.||+....++|.+-+.    .++.+|+++|||.+ ..|..  +|.-|+..+.+++++|.+|.. +|+..+.. ....
T Consensus       466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~-~g~i  538 (1159)
T PRK13030        466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPV-DGSI  538 (1159)
T ss_pred             eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCC-CCCC
Confidence            4567999999999988762    45679999999994 66653  588888899999999999984 55433221 1122


Q ss_pred             cHhh-----hcCCcceEEEeCCCHHH-----H-----------HHHHHHHHHHHHcCCCCeEEEEE
Q psy14560         96 DYYT-----RGDYIPGIWVDGMDVLA-----V-----------REASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus        96 d~~~-----~A~G~~~~~VdG~D~~~-----v-----------~~a~~~Al~~ar~~~gP~lIev~  140 (355)
                      ++.+     +|.|+.-+.|-..|+..     +           .+++++++   ++.+||++|...
T Consensus       539 ~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~~  601 (1159)
T PRK13030        539 SVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIYD  601 (1159)
T ss_pred             CHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence            3333     26798877664445544     2           23334433   357788888764

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=96.00  E-value=0.032  Score=63.14  Aligned_cols=117  Identities=17%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccc-cccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCC
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSAS   94 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~   94 (355)
                      .++..||......+|.+-.    .+++.+|.++|||.+ ..|..  +|..|+..+.+++++|.+|.. +|+..+.. ...
T Consensus       492 ~~~~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQp~-~G~  564 (1186)
T PRK13029        492 EGFSQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQPV-DGV  564 (1186)
T ss_pred             ceeeccCcchhhheeeccc----CCCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCCCC-CCc
Confidence            3456789988889998765    235679999999994 66653  488888899999999999884 55432221 112


Q ss_pred             ccHhh-----hcCCcceEEEeCCCHHHHH--------------HHHHHHHHHHHcCCCCeEEEEE
Q psy14560         95 TDYYT-----RGDYIPGIWVDGMDVLAVR--------------EASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus        95 ~d~~~-----~A~G~~~~~VdG~D~~~v~--------------~a~~~Al~~ar~~~gP~lIev~  140 (355)
                      .++..     +|.|+.-+.|-..|+....              +.++...+..|+.+|+++|...
T Consensus       565 ~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~  629 (1186)
T PRK13029        565 LTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD  629 (1186)
T ss_pred             CCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence            23333     3678877755333453332              2233333333467888888764

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=95.61  E-value=0.15  Score=44.03  Aligned_cols=103  Identities=23%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--  101 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--  101 (355)
                      ..+|.|.+++.     +++.++++  |=|..+   ..++|..|...++|+|++..+-..........+  ..|.....  
T Consensus        47 ~~~A~g~~~~~-----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~  116 (155)
T cd07035          47 VGMADGYARAT-----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRP  116 (155)
T ss_pred             HHHHHHHHHHH-----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHH
Confidence            34555665552     33333333  344333   346788888899999999876542211111111  12222221  


Q ss_pred             CCcceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEE
Q psy14560        102 DYIPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVV  140 (355)
Q Consensus       102 ~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~  140 (355)
                      .--...+++  +++++.+.+.+|++.+... ++|+.|++.
T Consensus       117 ~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~ip  154 (155)
T cd07035         117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDLP  154 (155)
T ss_pred             HhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence            112355664  6788999999999999877 789999873

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=95.53  E-value=0.28  Score=43.29  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=67.4

Q ss_pred             ccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHH-HcCCCEEEEEEeCCC-cceeeccccCCCccHhhh
Q psy14560         23 GAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK-LWGIPCIYVCENNGY-GMGTSAERSSASTDYYTR  100 (355)
Q Consensus        23 G~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa-~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~  100 (355)
                      +.+..+|.|..++     .++.++|+.+=|-   |...-+|..|. ..++|+++++..-+. +-..+  .+.....+.+.
T Consensus        44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~--~q~~~g~~~~~  113 (157)
T TIGR03845        44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEKIP--AQIPMGRATPK  113 (157)
T ss_pred             HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCc--cccchhhhhHH
Confidence            4555556666644     4566788877773   34556688888 899999999954442 11100  00000111111


Q ss_pred             ---cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560        101 ---GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus       101 ---A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~  140 (355)
                         ..+++...++  +++++ +++++|++.+.+.++|+.|-+.
T Consensus       114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~  153 (157)
T TIGR03845       114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD  153 (157)
T ss_pred             HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence               1366788885  47889 9999999999999999998764

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=95.35  E-value=0.28  Score=42.57  Aligned_cols=88  Identities=17%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc-ceeeccccCCCccHhhhc-CC--cceEEEeCCCHHHHHH
Q psy14560         44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG-MGTSAERSSASTDYYTRG-DY--IPGIWVDGMDVLAVRE  119 (355)
Q Consensus        44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~A-~G--~~~~~VdG~D~~~v~~  119 (355)
                      .+++..|-|..+.   ...|..|...+.|+|+|+-+-... ...+ ..  ...++.... .+  ....++  .+++++.+
T Consensus        67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  138 (160)
T cd07034          67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLP-KP--DQSDLMAARYGGHPWPVLAP--SSVQEAFD  138 (160)
T ss_pred             EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCC-Cc--CcHHHHHHHhCCCCEEEEeC--CCHHHHHH
Confidence            5556667777543   345777888899999999765532 1111 00  011121211 12  444455  47899999


Q ss_pred             HHHHHHHHHHcCCCCeEEEE
Q psy14560        120 ASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       120 a~~~Al~~ar~~~gP~lIev  139 (355)
                      .+++|++.++..++|++|-+
T Consensus       139 ~~~~A~~~a~~~~~Pv~l~~  158 (160)
T cd07034         139 LALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             HHHHHHHHHHHhCCCEEEEc
Confidence            99999999999889999864

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=95.30  E-value=0.077  Score=60.63  Aligned_cols=94  Identities=15%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             CeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccce-------eeccc---------cCCCccHhhh--cC
Q psy14560         43 GVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMG-------TSAER---------SSASTDYYTR--GD  102 (355)
Q Consensus        43 ~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~-------~~~~~---------~~~~~d~~~~--A~  102 (355)
                      ..||++.|||. ...|--  .|..+...+.+|.+||.||. |+.+       +|...         ....-|+...  ++
T Consensus       952 ~sv~~~~GDG~~~diG~~--~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176       952 KSVWIIGGDGWAYDIGYG--GLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred             ceeEEEecchhhhccCcc--chHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence            47999999997 344421  26677778999999999998 6542       22111         1112244444  46


Q ss_pred             CcceE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        103 YIPGI-WVD-GMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       103 G~~~~-~Vd-G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      |.+++ ++. +.++.++.+++.+|+    +.+||.+|++-+.
T Consensus      1030 g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~p 1067 (1165)
T TIGR02176      1030 GYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYSP 1067 (1165)
T ss_pred             CCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEECC
Confidence            87776 665 568888888888776    4689999999653

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=95.28  E-value=0.23  Score=43.98  Aligned_cols=104  Identities=18%  Similarity=0.080  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--Ccc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G~~  105 (355)
                      +|-|.+.+.   +.-..+++..|=|.++.   .-++..|...++|+|+|.-+-.......  ......|......  --.
T Consensus        53 mA~gyar~t---g~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~  124 (164)
T cd07039          53 AASAEAKLT---GKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVAVY  124 (164)
T ss_pred             HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhhcE
Confidence            344555442   22233444446666543   3457778889999999987655321110  0111123333222  223


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      ..+++  +++++.+++++|++.++..+||+.|++..
T Consensus       125 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~  158 (164)
T cd07039         125 NETVT--SPEQLPELLDRAIRTAIAKRGVAVLILPG  158 (164)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence            45665  68889999999999988888999999864

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=94.39  E-value=0.24  Score=43.83  Aligned_cols=106  Identities=21%  Similarity=0.122  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh--c
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR--G  101 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~--A  101 (355)
                      .-+|.|.+++.     +++.+|+.  |=|.++.   .-+|..|...++|+|+|+-+-..........+ ...|....  .
T Consensus        52 ~~~A~g~ar~~-----g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~  122 (172)
T PF02776_consen   52 AFMADGYARAT-----GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRP  122 (172)
T ss_dssp             HHHHHHHHHHH-----SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGG
T ss_pred             HHHHHHHHHhh-----ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcc
Confidence            34566666552     45555555  3444433   33566788899999999987663221111111 11233332  2


Q ss_pred             CCcceEEEeCCCHHHHHHHHHHHHHHH-HcCCCCeEEEEEee
Q psy14560        102 DYIPGIWVDGMDVLAVREASKFAVNYA-SSGKGPLVLEVVTY  142 (355)
Q Consensus       102 ~G~~~~~VdG~D~~~v~~a~~~Al~~a-r~~~gP~lIev~t~  142 (355)
                      ..-...+++  +++++.+++++|++.+ ...++|+.|++...
T Consensus       123 ~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d  162 (172)
T PF02776_consen  123 VTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQD  162 (172)
T ss_dssp             GSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred             ccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence            233466775  5778889999999988 67789999999753

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=94.05  E-value=0.82  Score=40.29  Aligned_cols=92  Identities=10%  Similarity=0.063  Sum_probs=55.8

Q ss_pred             eEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcc-eeec--cccC--CC-ccHhhhcC--CcceEEEeCCC
Q psy14560         44 VCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGM-GTSA--ERSS--AS-TDYYTRGD--YIPGIWVDGMD  113 (355)
Q Consensus        44 ~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~-~~~~--~~~~--~~-~d~~~~A~--G~~~~~VdG~D  113 (355)
                      +.+|++  |=|.++   ..-+|..|...+.|+|+|.-+..... ....  ....  .. .|......  --...+|.  +
T Consensus        60 ~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~  134 (162)
T cd07038          60 LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--D  134 (162)
T ss_pred             CEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--C
Confidence            555554  455444   23457788889999999997654221 1100  0000  00 12222222  22345664  6


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560        114 VLAVREASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus       114 ~~~v~~a~~~Al~~ar~~~gP~lIev~  140 (355)
                      ++++.+++++|++.+..++||+.|++.
T Consensus       135 ~~~i~~~v~~A~~~a~s~~gPV~l~iP  161 (162)
T cd07038         135 PENAAEEIDRVLRTALRESRPVYIEIP  161 (162)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence            788999999999999998899999874

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=93.90  E-value=0.53  Score=47.38  Aligned_cols=116  Identities=20%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHh--hhc
Q psy14560         24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYY--TRG  101 (355)
Q Consensus        24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~--~~A  101 (355)
                      .++.+|+|++++      +.++++.+-=+++.-  .+|.+.+++-.++|+|+++.+... .++.........|+.  ..+
T Consensus        59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~l--m~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~~  129 (376)
T PRK08659         59 ASMAAVIGASWA------GAKAMTATSGPGFSL--MQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARWG  129 (376)
T ss_pred             HHHHHHHhHHhh------CCCeEeecCCCcHHH--HHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhcc
Confidence            456678888887      444555544444333  357788888889999998887542 111111111112332  222


Q ss_pred             -CC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560        102 -DY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus       102 -~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                       .| .+-+.+.-.|+.+.++....|.+.+.+.+-|+++-...  +.+|+..
T Consensus       130 ~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~~  178 (376)
T PRK08659        130 THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE--VVGHMRE  178 (376)
T ss_pred             cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech--HhhCCcc
Confidence             22 44455566789999999999999988888899997776  3777753

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=93.86  E-value=0.11  Score=57.89  Aligned_cols=73  Identities=14%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             ccccccccc-cccccceee--cCCCHHHHHHHHhccccc-CCCCCCCCCcccccCCCCcc-ccCCc-------------c
Q psy14560        191 REQDSIISA-YRVHGWTYL--MGVSVFGVLSELTGRRTG-CAKGKGPISWECCAKGKGGS-MHMYA-------------K  252 (355)
Q Consensus       191 ~~~D~v~~~-yR~~~~~~~--~g~~~~~~~~~~~g~~~g-~~~~~~~~~w~~~~~G~gg~-~h~~~-------------~  252 (355)
                      .-.|++++. ||++...|+  .|.|+..+|+|+.|+..+ .+.            |+|.. .|+..             .
T Consensus       241 gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~------------g~gdvKyHlg~~~~~~~~~~~~~~~  308 (929)
T TIGR00239       241 GTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPD------------GTGDVKYHMGRFSSDFTTDGKLVHL  308 (929)
T ss_pred             CCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccC------------CCCCcCccCCCcccccccCCCccee
Confidence            345999998 999999999  999999999999997665 232            67776 77762             3


Q ss_pred             cccccccccCCchhhhhhhhhcc
Q psy14560        253 NFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       253 ~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      .+++.+++++++.|+++.+..|.
T Consensus       309 ~l~~npSHLeav~Pva~G~ArA~  331 (929)
T TIGR00239       309 ALAFNPSHLEIVSPVVIGSTRAR  331 (929)
T ss_pred             eecCCCcccccccchhhhHHHHH
Confidence            67889999999999999885543

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=93.60  E-value=0.59  Score=46.62  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccH--hhh-
Q psy14560         24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDY--YTR-  100 (355)
Q Consensus        24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~--~~~-  100 (355)
                      .++.+|+|++++      +.++++.+-|.++.-  .+|.|..|+-..+|+++++.+=. +-++.. .+....|.  +.+ 
T Consensus        59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~  128 (352)
T PRK07119         59 AAINMVYGAAAT------GKRVMTSSSSPGISL--KQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKG  128 (352)
T ss_pred             HHHHHHHHHHhh------CCCEEeecCcchHHH--HHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhc
Confidence            356778898887      566888887777655  56889999999999888887643 211111 11111122  222 


Q ss_pred             -cCC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        101 -GDY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       101 -A~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                       +.| .+....+-.|+.++++....|.+.+.+..-|+++-...  +.+|+.
T Consensus       129 ~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~  177 (352)
T PRK07119        129 GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDG--VLGQMM  177 (352)
T ss_pred             CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcch--hhhCce
Confidence             222 34445566789999999999999888888899997766  356764

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=93.00  E-value=0.09  Score=51.34  Aligned_cols=63  Identities=13%  Similarity=-0.041  Sum_probs=54.9

Q ss_pred             ccccccceeecCCCHH-HHHHHHhcccc------cCCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhh
Q psy14560        199 AYRVHGWTYLMGVSVF-GVLSELTGRRT------GCAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLK  271 (355)
Q Consensus       199 ~yR~~~~~~~~g~~~~-~~~~~~~g~~~------g~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~  271 (355)
                      -||+|++....|.++. ..+.+.+|+.+      ||+.            +.+|++|+...++.+.++++|+++++|..-
T Consensus        14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~------------~~~g~~p~~~~~~~~i~~~~G~~~~~A~G~   81 (300)
T PRK11864         14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCST------------VIQGDTPKSPLTVPVLHTAFAATAAVASGI   81 (300)
T ss_pred             ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccc------------eecCCCCcccccccceeehhhChHHHHHHH
Confidence            5899999999999998 99999999887      7776            888888887789999999999999998875


Q ss_pred             hh
Q psy14560        272 SI  273 (355)
Q Consensus       272 ~~  273 (355)
                      ..
T Consensus        82 a~   83 (300)
T PRK11864         82 EE   83 (300)
T ss_pred             HH
Confidence            33

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=92.60  E-value=0.95  Score=40.14  Aligned_cols=101  Identities=18%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--  103 (355)
                      +|-|.+.+     .+++.+|++  |=|..+.   .-++..|-..+.|+|+|+.+-..........+  ..|......-  
T Consensus        50 mAdgyar~-----sg~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~vt  119 (162)
T cd07037          50 FALGLAKA-----SGRPVAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGANQ--TIDQVGLFGDYV  119 (162)
T ss_pred             HHHHHHHh-----hCCCEEEEECCchHHHHH---hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCc--ccchhhhcccee
Confidence            45555554     234455444  5555442   34577788899999999876442211111111  1122221111  


Q ss_pred             cceEEEeCCCHHH------HHHHHHHHHHHHHcCC-CCeEEEEE
Q psy14560        104 IPGIWVDGMDVLA------VREASKFAVNYASSGK-GPLVLEVV  140 (355)
Q Consensus       104 ~~~~~VdG~D~~~------v~~a~~~Al~~ar~~~-gP~lIev~  140 (355)
                      -...+|.  ++++      +.+++++|+..++..+ ||++|++.
T Consensus       120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP  161 (162)
T cd07037         120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP  161 (162)
T ss_pred             eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence            1233443  3344      7788899998888764 89999874

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=91.54  E-value=0.88  Score=45.59  Aligned_cols=113  Identities=18%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             cccchHHHHHHHHHHHhcCCCCeEEEEeCcccccc-cHHHHHHHHHHHcCCCEEEEEEeCC-Ccce-eeccccCCCccHh
Q psy14560         22 VGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQ-GQNFEAYNIAKLWGIPCIYVCENNG-YGMG-TSAERSSASTDYY   98 (355)
Q Consensus        22 lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~-G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~-~~~~~~~~~~d~~   98 (355)
                      =|.++++|.|+.+|     .+++.++++=-.+... -.-..+|.....|++|++++|..-+ ++.- .+..  .......
T Consensus        35 E~~av~iaaG~~la-----tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh--~~~G~~t  107 (361)
T TIGR03297        35 EGAAVGLAAGAYLA-----TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQH--VKQGRIT  107 (361)
T ss_pred             chHHHHHHHHHHHh-----cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchh--hHHhHHH
Confidence            57788888888887     2344444542222211 0111123334668999999987655 3211 1111  0001111


Q ss_pred             h---hcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         99 T---RGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        99 ~---~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .   .+.+++...++. +.++..+++.+|++.+.+.++|+.+-+.-.
T Consensus       108 ~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~  153 (361)
T TIGR03297       108 LSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVVRKG  153 (361)
T ss_pred             HHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEEccc
Confidence            1   146999999853 566788899999999999999999887643

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK08611 pyruvate oxidase; Provisional

Probab=91.13  E-value=1.9  Score=45.65  Aligned_cols=105  Identities=17%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+.+.   +.-..+++..|=|.++.   .-++..|-..++|+|+|.-+-.........  +...|.......+  .
T Consensus        58 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~--~q~~d~~~l~~~itk~  129 (576)
T PRK08611         58 AAAAYAKLT---GKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTDF--FQEVNLEKMFEDVAVY  129 (576)
T ss_pred             HHHHHHHHh---CCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCCC--ccccCHHHHhhcccce
Confidence            455555442   22233444457777653   245777888999999998765532211111  1112333332222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ..+|+  +++++.+++++|++.+...+||+.|++...
T Consensus       130 ~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D  164 (576)
T PRK08611        130 NHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPDD  164 (576)
T ss_pred             eEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence            34554  688899999999998888889999999754

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=90.92  E-value=2.5  Score=36.84  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHH-HHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYN-IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP  105 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~-~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~  105 (355)
                      +.|.|+|+.    + .+++++..  ..+.. ..++.|. .++.+++|+++++...+++............++.-. ..+|
T Consensus        53 g~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~-~~iP  123 (156)
T cd07033          53 GIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALL-RAIP  123 (156)
T ss_pred             HHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHh-cCCC
Confidence            345555543    3 55666666  33332 3344454 889999999998886554432111111122233222 2445


Q ss_pred             eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      ++.| .=.|+.++...++.|++    .++|++|-+
T Consensus       124 g~~v~~Ps~~~~~~~ll~~a~~----~~~P~~irl  154 (156)
T cd07033         124 NMTVLRPADANETAAALEAALE----YDGPVYIRL  154 (156)
T ss_pred             CCEEEecCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence            4433 23467777777776664    467998843

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=90.40  E-value=1.5  Score=46.54  Aligned_cols=114  Identities=18%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCcc--Hhhhc-
Q psy14560         25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTD--YYTRG-  101 (355)
Q Consensus        25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d--~~~~A-  101 (355)
                      ++.+|+|+++|      +..+++.+-=.+++-  ..|.|.+|+-..+|+|+++.|-. +.++.........|  +...+ 
T Consensus       249 A~~~a~GAs~a------G~Ra~taTSg~Gl~l--m~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~  319 (562)
T TIGR03710       249 AINMAIGASYA------GARAMTATSGPGFAL--MTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGG  319 (562)
T ss_pred             HHHHHHhHHhc------CCceeecCCCCChhH--hHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCC
Confidence            46678888887      444555554444433  46889999999999888887664 22221111111122  22222 


Q ss_pred             CC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        102 DY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       102 ~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      .| .+.+.+.-.|+.++++...+|.+.+.+..-|+++-....  .+|+.
T Consensus       320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~--l~~~~  366 (562)
T TIGR03710       320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQY--LANSY  366 (562)
T ss_pred             CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechH--HhCCc
Confidence            11 334455566899999999999999988889999977664  35553

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=90.32  E-value=0.82  Score=42.94  Aligned_cols=110  Identities=19%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC---cceeeccccCCCccHh-hh
Q psy14560         25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY---GMGTSAERSSASTDYY-TR  100 (355)
Q Consensus        25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~---~~~~~~~~~~~~~d~~-~~  100 (355)
                      .+.+++|++++     ..+...+.-|-|= +.  ..|.|-+++-.++|+++++.|-..   |+++...    ..|+. .+
T Consensus        48 A~~~~~GAs~a-----G~ra~t~ts~~Gl-~l--m~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~----q~D~~~~~  115 (230)
T PF01855_consen   48 AMEAAIGASAA-----GARAMTATSGPGL-NL--MAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPE----QDDLMAAR  115 (230)
T ss_dssp             HHHHHHHHHHT-----T--EEEEEECCHH-HH--HCCCHHHHHHTT--EEEEEEEB---SSSB--SB-----SHHHHHTT
T ss_pred             HHHHHHHHHhc-----CCceEEeecCCcc-cc--cHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCC----hhHHHHHH
Confidence            45667888876     2233344444443 21  235578889999999888887542   2222211    12222 23


Q ss_pred             cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       101 A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      -.|+..+..  .|+.+.++....|.+.+.+..-|+++-....+ ..|+.
T Consensus       116 d~~~~vl~p--~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~-~sh~~  161 (230)
T PF01855_consen  116 DSGWIVLAP--SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL-CSHSR  161 (230)
T ss_dssp             TSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC-CTC-E
T ss_pred             hcCeEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEechhh-hcCcc
Confidence            346665544  47889999999999988888999999776643 23554

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=90.32  E-value=2.8  Score=44.01  Aligned_cols=105  Identities=14%  Similarity=0.046  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP--  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~--  105 (355)
                      +|.|.+.+.   +.-..+++..|=|.++.   .-++..|-.-+.|+|+|+-+-.........  +...|.......+.  
T Consensus        54 mAdgyar~t---gkpgv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q~~d~~~l~~~vtk~  125 (549)
T PRK06457         54 AASVEAKIT---GKPSACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESDMIGHDY--FQEVNLTKLFDDVAVF  125 (549)
T ss_pred             HHHHHHHHh---CCCeEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCccccCCCc--ccccchhhhhccceeE
Confidence            345555442   22233444457776553   345777888999999998754322111111  11123333222222  


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ..+|.  +++++.+++++|++.+...+||+.|++..+
T Consensus       126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D  160 (549)
T PRK06457        126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLPVD  160 (549)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence            33453  678899999999998888889999999754

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=90.21  E-value=1.8  Score=45.84  Aligned_cols=105  Identities=23%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.|.+   .+.-.++++..|=|+++-   ...|.+|-.-+.|+|.|.-.=.....  ....+-..|...+...+  .
T Consensus        54 mAdgyar~---TGkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~~~~~--g~~afQe~D~~~l~~p~tk~  125 (550)
T COG0028          54 AADGYARA---TGKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVPTSLI--GTDAFQEVDQVGLFRPITKY  125 (550)
T ss_pred             HHHHHHHH---cCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcccccc--CcchhhhcchhhHhhhhhee
Confidence            45555544   345566777788888753   34578888999999998762111110  00111112343333222  3


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      .++|.  +++++.+.+++|++.|.+++ ||++|++..+
T Consensus       126 ~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D  161 (550)
T COG0028         126 NFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPKD  161 (550)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence            45664  68999999999999999877 9999999754

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=90.19  E-value=1.9  Score=43.48  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC---CcceeeccccCCCccHhhhc
Q psy14560         25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG---YGMGTSAERSSASTDYYTRG  101 (355)
Q Consensus        25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~---~~~~~~~~~~~~~~d~~~~A  101 (355)
                      ++.+|+|+++|      +.++++.+-=+++.-  .+|.+.+++-.++|+++++.+-.   -|+  +.............+
T Consensus        59 A~~~a~GAs~a------G~Ra~taTSg~G~~l--m~E~~~~a~~~e~P~V~~~~~R~GpstG~--p~~~~q~D~~~~~~~  128 (375)
T PRK09627         59 GISVALGASMS------GVKSMTASSGPGISL--KAEQIGLGFIAEIPLVIVNVMRGGPSTGL--PTRVAQGDVNQAKNP  128 (375)
T ss_pred             HHHHHHHHHhh------CCCEEeecCCchHHH--HhhHHHHHHhccCCEEEEEeccCCCcCCC--CCccchHHHHHHhcC
Confidence            46678888887      444555554444333  34778999999999988777643   222  221111112222222


Q ss_pred             -CC-cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560        102 -DY-IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus       102 -~G-~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                       +| .+-+.+.-.|+.++++...+|.+.+.+..-|+++-...  +.+|+..
T Consensus       129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~--~lsh~~~  177 (375)
T PRK09627        129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE--TVGHMYG  177 (375)
T ss_pred             CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch--HHhCCee
Confidence             22 33345566789999999999999988888899997766  3577653

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=89.94  E-value=2.7  Score=44.13  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHH
Q psy14560         43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREA  120 (355)
Q Consensus        43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a  120 (355)
                      .++++..|=|.++.   .-++..|-.-++|||+|.-.............+...|.......  -...+|+  +++++.++
T Consensus        67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~  141 (554)
T TIGR03254        67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG  141 (554)
T ss_pred             EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence            34444557777653   23577888899999999875543210000111111233332222  2345665  68899999


Q ss_pred             HHHHHHHHHcC-CCCeEEEEEee
Q psy14560        121 SKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       121 ~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      +++|++.++++ .||+.|++..+
T Consensus       142 i~rA~~~A~~~~pGPV~l~iP~D  164 (554)
T TIGR03254       142 IARAIRTAVSGRPGGVYLDLPAA  164 (554)
T ss_pred             HHHHHHHHhcCCCCcEEEEcCHH
Confidence            99999988875 48999998753

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=89.92  E-value=3  Score=42.28  Aligned_cols=112  Identities=15%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhh-hcCC
Q psy14560         25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYT-RGDY  103 (355)
Q Consensus        25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~-~A~G  103 (355)
                      ++.+|+|+++|      +..+++.+-=.+++-  .+|.|.+|+-.++|+|+++.|-...  ++........|+.. +--|
T Consensus        61 A~~~aiGAs~a------GaRa~TaTSg~Gl~l--m~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~g  130 (390)
T PRK08366         61 AMAACIGASAA------GARAFTATSAQGLAL--MHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDTG  130 (390)
T ss_pred             HHHHHHHHHhh------CCCeEeeeCcccHHH--HhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhcC
Confidence            56778898887      445565554444433  4588999999999988887743322  22221111123221 2235


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      +-.  .-..|+.+.++....|.+.+.+..-|+++-....+ ..|..
T Consensus       131 ~i~--~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~-~sh~~  173 (390)
T PRK08366        131 WMQ--FYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFI-LSHTY  173 (390)
T ss_pred             EEE--EeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcc-ccccc
Confidence            533  33368889999889999988888899999876543 44543

>PRK07064 hypothetical protein; Provisional

Probab=89.20  E-value=3.1  Score=43.53  Aligned_cols=107  Identities=20%  Similarity=0.151  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcCCc--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYI--  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~G~--  104 (355)
                      +|.|.+.+.   +.-.++++..|=|.++.   .-++..|-.-+.|||+++-+-. ..+...........|.......+  
T Consensus        56 ~A~gyar~t---g~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk  129 (544)
T PRK07064         56 MADAHARVS---GGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK  129 (544)
T ss_pred             HHHHHHHhc---CCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence            455555442   22234445557777653   3457778889999999987422 11110000000112333332221  


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ...+|+  +++++.+++++|++.+... .||+.|++..+
T Consensus       130 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d  166 (544)
T PRK07064        130 AAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPID  166 (544)
T ss_pred             eEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence            244564  6888999999999988876 79999999753

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=88.90  E-value=3.8  Score=43.35  Aligned_cols=91  Identities=18%  Similarity=0.111  Sum_probs=55.4

Q ss_pred             eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcCCcc--eEEEeCCCHHHHHHH
Q psy14560         44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGDYIP--GIWVDGMDVLAVREA  120 (355)
Q Consensus        44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~G~~--~~~VdG~D~~~v~~a  120 (355)
                      ++++..|=|.++.   .-+|..|-..+.|||+|.-.-. .....   ..+...|.......+-  ..+|  .+++++.+.
T Consensus        67 v~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~~---~~~Q~~d~~~l~~~vtk~~~~v--~~~~~~~~~  138 (579)
T TIGR03457        67 MVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIGL---GGFQEADQLPMFQEFTKYQGHV--RHPSRMAEV  138 (579)
T ss_pred             EEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCCC---CCCcccchhhhhhcceeEEEec--CCHHHHHHH
Confidence            3444457777653   2357778889999999974322 11100   0011113222222222  3344  468899999


Q ss_pred             HHHHHHHHHcCCCCeEEEEEee
Q psy14560        121 SKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       121 ~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      +++|++.+...+||+.|++...
T Consensus       139 i~~A~~~A~~~~GPV~l~iP~D  160 (579)
T TIGR03457       139 LNRCFERAWREMGPAQLNIPRD  160 (579)
T ss_pred             HHHHHHHHhcCCCCEEEEeCcc
Confidence            9999999998889999999753

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=88.80  E-value=4.3  Score=42.78  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHHH
Q psy14560         44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREAS  121 (355)
Q Consensus        44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a~  121 (355)
                      ++++..|=|.++.   .-++..|...++|||+|+-.-...........+...|.......  -...+|+  +++++.+.+
T Consensus        75 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~~i  149 (569)
T PRK09259         75 VCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVN--RAEDIGIGV  149 (569)
T ss_pred             EEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcC--CHHHHHHHH
Confidence            3444447777653   23577888899999999875432210000001111233322222  1244554  688999999


Q ss_pred             HHHHHHHHcC-CCCeEEEEEee
Q psy14560        122 KFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       122 ~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ++|++.|..+ .||+.|++..+
T Consensus       150 ~~A~~~A~~~~~GPV~l~iP~D  171 (569)
T PRK09259        150 ARAIRTAVSGRPGGVYLDLPAK  171 (569)
T ss_pred             HHHHHHhhhCCCCcEEEEeCHH
Confidence            9999998875 58999999743

>PRK07524 hypothetical protein; Provisional

Probab=88.58  E-value=3.4  Score=43.13  Aligned_cols=94  Identities=18%  Similarity=0.092  Sum_probs=57.2

Q ss_pred             eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec-cccCCCccHhhhcCC--cceEEEeCCCHHHHHHH
Q psy14560         44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA-ERSSASTDYYTRGDY--IPGIWVDGMDVLAVREA  120 (355)
Q Consensus        44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~-~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a  120 (355)
                      .+++..|=|.++.   .-++..|-.-++|||++.-.......... .......|.......  -...+|+  +++++.+.
T Consensus        67 v~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~~  141 (535)
T PRK07524         67 VCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPEV  141 (535)
T ss_pred             EEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHHH
Confidence            4444556666543   34577888899999999875442111000 000111233333222  2334554  68899999


Q ss_pred             HHHHHHHHHcC-CCCeEEEEEee
Q psy14560        121 SKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       121 ~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      +++|++.+++. .||+.|++..+
T Consensus       142 l~~A~~~A~~~~~GPV~l~iP~D  164 (535)
T PRK07524        142 LARAFAVFDSARPRPVHIEIPLD  164 (535)
T ss_pred             HHHHHHHHhcCCCCcEEEEeCHh
Confidence            99999999876 69999999754

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=88.49  E-value=4  Score=43.24  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.+.+.   +.-.++++..|=|.++.   .-++..|-..++|||+|.-.=.........  +...|.......+  .
T Consensus        58 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~--~q~~d~~~l~~~~tk~  129 (588)
T PRK07525         58 MADGYTRVT---GRMGMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIGQGG--FQEAEQMPMFEDMTKY  129 (588)
T ss_pred             HHHHHHHHh---CCCEEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCCCCC--CcccchhhhhhhheeE
Confidence            455555442   22234444557777653   235777888999999998422211000000  1011222222222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ..+|  .+++++.+++++|++.++...||+.|++...
T Consensus       130 ~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D  164 (588)
T PRK07525        130 QEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIPRD  164 (588)
T ss_pred             EEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence            3344  4688999999999999999999999999754

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=88.42  E-value=5.3  Score=42.19  Aligned_cols=105  Identities=18%  Similarity=0.095  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+.+.   +.-.++++..|=|+++.   .-+|..|-..++|||+|.-+=.......  ......|.......+  .
T Consensus        64 ~Adgyar~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Q~~d~~~l~~~vtk~  135 (578)
T PRK06112         64 MADGYARVS---GKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDR--NAFQELDHIALFQSCTKW  135 (578)
T ss_pred             HHHHHHHHh---CCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhhccccce
Confidence            344555442   22233444446666543   3457778889999999986432111000  001112333322222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++.+.+++|++.++.+ .||+.|++...
T Consensus       136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D  171 (578)
T PRK06112        136 VRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPAD  171 (578)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence            34554  6888999999999988886 48999999754

>PRK07586 hypothetical protein; Validated

Probab=88.41  E-value=4  Score=42.34  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.|...   +.-.++++..|=|.++-   .-++..|-.-+.|||+|.-+-.......  ...-..|.......+  .
T Consensus        54 mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk~  125 (514)
T PRK07586         54 AADGYARMA---GKPAATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATYHRKY--DAPLTSDIEALARPVSGW  125 (514)
T ss_pred             HHHHHHHHH---CCCEEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchhccCC--Ccccccchhhhhccccce
Confidence            455555442   22233444557776542   2346678889999999987543211100  001112333333222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|.  +++++.+++++|++.++.+ .||+.|++..+
T Consensus       126 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D  161 (514)
T PRK07586        126 VRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD  161 (514)
T ss_pred             eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence            34554  6888999999999999886 69999999764

>PRK12474 hypothetical protein; Provisional

Probab=88.11  E-value=4.2  Score=42.34  Aligned_cols=105  Identities=17%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.+.+.   +.-..+++..|=|.++-   .-++..|-.-+.|||+|+-.........  ..+-..|.......+  .
T Consensus        58 mAdgYaR~t---g~~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk~  129 (518)
T PRK12474         58 AADGYGRIA---GKPAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSRW  129 (518)
T ss_pred             HHHHHHHHh---CCCEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccce
Confidence            455555542   22333455557776643   2346677888999999987543211100  000112343333222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..+|  .+++++.+++++|++.+.+++ ||++|++..+
T Consensus       130 ~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D  165 (518)
T PRK12474        130 VHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPAD  165 (518)
T ss_pred             eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence            3344  478899999999999888765 8999999754

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=88.09  E-value=3.9  Score=43.06  Aligned_cols=103  Identities=18%  Similarity=0.140  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhcCCCCeEEE--EeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc-
Q psy14560         28 LGTGIAFAAQYKGTGGVCFA--LYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI-  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~--~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~-  104 (355)
                      +|.|.+..     .+++.+|  ..|=|.++.   .-++..|-..+.|||+|.-.-.......  ..+...|.......+ 
T Consensus        58 ~Adgyar~-----tg~~gv~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t  127 (572)
T PRK06456         58 AADGYARA-----SGVPGVCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT  127 (572)
T ss_pred             HHHHHHHh-----hCCCEEEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence            45555544     2344444  457777653   2457778889999999986533221100  001111222222222 


Q ss_pred             -ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        105 -PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       105 -~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                       ...+|  .+++++.+++.+|++.++.++ ||+.|++..+
T Consensus       128 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D  165 (572)
T PRK06456        128 KYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD  165 (572)
T ss_pred             eeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence             23455  478889999999999888865 9999999753

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=88.05  E-value=4.3  Score=42.85  Aligned_cols=105  Identities=25%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.+...   +.-.++++..|=|.++.   .-++..|-.-+.|||+|.-.-.........  +-..|.......+  .
T Consensus        57 mAdgyar~t---g~~gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q~~d~~~l~~~itk~  128 (574)
T PRK06466         57 MADGYARAT---GKTGVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTLIGEDA--FQETDMVGISRPIVKH  128 (574)
T ss_pred             HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCCc--ccccchhhhhhcccee
Confidence            455555542   22234444557777653   345778888999999998754422111100  1112333332222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++..++++|+..++.+ .||+.|++...
T Consensus       129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06466        129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD  164 (574)
T ss_pred             EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence            34554  6888999999999998887 49999999765

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=87.88  E-value=5.7  Score=42.19  Aligned_cols=94  Identities=14%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHH
Q psy14560         42 GGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAV  117 (355)
Q Consensus        42 ~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v  117 (355)
                      +++.+|+  .|=|.++.   .-+|..|-..+.|||+|.-.-.........  +...|.......+  ...+|.  +++++
T Consensus        66 g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~D~~~~~~~vtk~~~~v~--~~~~i  138 (588)
T TIGR01504        66 GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIAAIAKPVSKMAVTVR--EAALV  138 (588)
T ss_pred             CCeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccCHHHHhhhhceEEEEcC--CHHHH
Confidence            3455554  46666543   235777888999999998654422211111  1112333332222  234554  68899


Q ss_pred             HHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        118 REASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       118 ~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      .+++++|++.++.++ ||+.|++..+
T Consensus       139 ~~~i~~A~~~A~~~~~GPV~l~iP~D  164 (588)
T TIGR01504       139 PRVLQQAFHLMRSGRPGPVLIDLPFD  164 (588)
T ss_pred             HHHHHHHHHHHccCCCCeEEEEeCcc
Confidence            999999999888764 8999999764

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=87.65  E-value=3.5  Score=43.23  Aligned_cols=106  Identities=20%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec---cccCCCc-cHhhhcCCc
Q psy14560         29 GTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA---ERSSAST-DYYTRGDYI  104 (355)
Q Consensus        29 AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~---~~~~~~~-d~~~~A~G~  104 (355)
                      |-|.|.+.   +.-.++++..|=|.++.   .-++..|...++|||+|.-+-........   ..+.... +.......+
T Consensus        54 Adgyar~t---g~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  127 (535)
T TIGR03394        54 ADAAARYR---GTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEV  127 (535)
T ss_pred             HhHHHHhh---CCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhh
Confidence            55555442   22334455557777653   23577788899999999865432110000   0011001 222322222


Q ss_pred             --ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        105 --PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       105 --~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                        ...+|.  +++++.+++++|++.++..+||+.|++..+
T Consensus       128 tk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D  165 (535)
T TIGR03394       128 TCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD  165 (535)
T ss_pred             eEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence              233453  577888888999988888889999999865

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=87.39  E-value=4.1  Score=43.03  Aligned_cols=105  Identities=22%  Similarity=0.277  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.+...   +.-..+++..|=|.++.   .-++..|-..+.|||+|.-+-.......  ..+...|.......+  .
T Consensus        57 mAdgYar~t---g~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~~tk~  128 (574)
T PRK07979         57 MADGLARAT---GEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIGY--DAFQECDMVGISRPVVKH  128 (574)
T ss_pred             HHHHHHHHh---CCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccCC--CCCceecHHHHhhcccce
Confidence            455555442   22344555557777653   2357778889999999986533211110  011112333332222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..+|+  +++++..++++|++.++..+ ||+.|++..+
T Consensus       129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D  164 (574)
T PRK07979        129 SFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD  164 (574)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence            44564  78899999999999888874 9999999764

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2

Probab=87.20  E-value=6.1  Score=35.12  Aligned_cols=106  Identities=17%  Similarity=0.170  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHhcCC-CCeEEEEeCcccc-cccHHHHHHH-HHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc-
Q psy14560         26 VPLGTGIAFAAQYKGT-GGVCFALYGDGAS-NQGQNFEAYN-IAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG-  101 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~-~~G~~~EaL~-~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A-  101 (355)
                      ++.|.|+|++    ++ ..+++..++|=.. .+-...+.+. ..+..++|+. |+..-+++.+.......+..|..-+. 
T Consensus        61 vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~  135 (178)
T PF02779_consen   61 VGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRS  135 (178)
T ss_dssp             HHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHT
T ss_pred             cceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccccccccccc
Confidence            4556676665    43 4555566666443 1123444444 6778899999 66665544332222223333443332 


Q ss_pred             C-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEE
Q psy14560        102 D-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus       102 ~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~  140 (355)
                      . |+..+.-  .|+.++..+++.+++.  +.++|++|-..
T Consensus       136 iPg~~v~~P--sd~~e~~~~l~~a~~~--~~~~P~~ir~~  171 (178)
T PF02779_consen  136 IPGMKVVVP--SDPAEAKGLLRAAIRR--ESDGPVYIREP  171 (178)
T ss_dssp             STTEEEEE---SSHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred             ccccccccC--CCHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence            2 4444432  4777777777766642  25789998654

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=86.97  E-value=5.3  Score=42.63  Aligned_cols=91  Identities=25%  Similarity=0.350  Sum_probs=56.2

Q ss_pred             eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc-ceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHHHHH
Q psy14560         44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG-MGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAVREA  120 (355)
Q Consensus        44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a  120 (355)
                      ++++..|=|.++.   .-+|..|..-+.|||+|.-+-... +..   ..+...|.......+  ...+|+  +++++.++
T Consensus        88 v~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~~~  159 (616)
T PRK07418         88 VCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGT---DAFQETDIFGITLPIVKHSYVVR--DPSDMARI  159 (616)
T ss_pred             EEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC---CCcccccHHHHhhhcceeEEEeC--CHHHHHHH
Confidence            3444447777653   235778888999999998743311 110   011112333322222  234554  68899999


Q ss_pred             HHHHHHHHHcCC-CCeEEEEEee
Q psy14560        121 SKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       121 ~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      +++|++.|.+.+ ||+.|++..+
T Consensus       160 l~~A~~~A~~~~~GPv~l~iP~D  182 (616)
T PRK07418        160 VAEAFHIASSGRPGPVLIDIPKD  182 (616)
T ss_pred             HHHHHHHHhcCCCCcEEEecchh
Confidence            999999998876 9999998753

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=86.97  E-value=5.4  Score=42.00  Aligned_cols=103  Identities=24%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc-
Q psy14560         28 LGTGIAFAAQYKGTGGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI-  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~-  104 (355)
                      +|.|.+.+     .+++.+|+  .|=|.++.   .-++..|-..+.|||+|.-.-.......  ..+...|.......+ 
T Consensus        66 ~Adgyar~-----tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t  135 (564)
T PRK08155         66 IAQGMART-----TGKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT  135 (564)
T ss_pred             HHHHHHHH-----cCCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence            45555554     23444444  46776543   2457778889999999986433211100  001111222222222 


Q ss_pred             -ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        105 -PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       105 -~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                       ...+|+  +++++...+++|++.++.. .||+.|++..+
T Consensus       136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D  173 (564)
T PRK08155        136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD  173 (564)
T ss_pred             eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence             234554  7889999999999998887 49999999754

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=86.80  E-value=5.6  Score=42.12  Aligned_cols=105  Identities=24%  Similarity=0.238  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|-|.+...   +.-..+++..|=|.++.   .-++..|-..+.|||+|+-.-......  .......|.......  -.
T Consensus        67 mAdgyar~t---g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk~  138 (570)
T PRK06725         67 AAEGYARAS---GKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVTKH  138 (570)
T ss_pred             HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhcccee
Confidence            455555542   22234444557776543   245677778899999998643322110  011111233333222  22


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..+|+  +++++.+.+++|++.++..+ ||+.|++..+
T Consensus       139 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D  174 (570)
T PRK06725        139 NYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD  174 (570)
T ss_pred             EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence            34554  68899999999999998874 9999999754

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=86.80  E-value=3.8  Score=41.68  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhh-hcC
Q psy14560         24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYT-RGD  102 (355)
Q Consensus        24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~-~A~  102 (355)
                      .++.+++|++++      +.++++.+-=.+++-  .+|.|.+|+-.++|+++++.+-...-.  .......+|+.. +.-
T Consensus        67 ~A~~~~~GAs~a------GaRa~TaTS~~Gl~l--m~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i~~d~~D~~~~r~~  136 (407)
T PRK09622         67 AAMSACVGAAAA------GGRVATATSSQGLAL--MVEVLYQASGMRLPIVLNLVNRALAAP--LNVNGDHSDMYLSRDS  136 (407)
T ss_pred             HHHHHHHHHHhh------CcCEEeecCcchHHH--HhhHHHHHHHhhCCEEEEEeccccCCC--cCCCchHHHHHHHhcC
Confidence            346678888887      444555553333332  457899999999998888887664321  111111233322 223


Q ss_pred             CcceEEEeCCCHHHHHHHHHHHHHHHHcC--CCCeEEEEEeeeeCCCC
Q psy14560        103 YIPGIWVDGMDVLAVREASKFAVNYASSG--KGPLVLEVVTYRYSGHS  148 (355)
Q Consensus       103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~~--~gP~lIev~t~R~~GHs  148 (355)
                      |+..  +.-.++.++++....|.+.+.+.  .-|+++-.... ..+|+
T Consensus       137 g~iv--l~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~-~~sh~  181 (407)
T PRK09622        137 GWIS--LCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGF-LCSHT  181 (407)
T ss_pred             CeEE--EeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechh-hhhCc
Confidence            5444  44568999999999999888665  78999877653 34664

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=86.80  E-value=4.5  Score=42.52  Aligned_cols=105  Identities=22%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+.+.   +.-..+++..|=|.++.   .-++..|-..+.|||+|.-.=.........  ....|.......+  .
T Consensus        61 ~Adgyar~t---g~~gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~l~~~~tk~  132 (557)
T PRK08199         61 MAEAYGKLT---GRPGICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARDFREREA--FQEIDYRRMFGPMAKW  132 (557)
T ss_pred             HHHHHHHhc---CCCEEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCc--ccccCHHHhhhhhhce
Confidence            355555442   22233444447777653   345777888999999998643211100000  1111222222121  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|  .+++++.+++++|++.+... .||+.|++..+
T Consensus       133 ~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d  168 (557)
T PRK08199        133 VAEI--DDAARIPELVSRAFHVATSGRPGPVVLALPED  168 (557)
T ss_pred             eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence            3355  47889999999999998887 48999999754

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=86.76  E-value=5.2  Score=41.93  Aligned_cols=105  Identities=24%  Similarity=0.263  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+...   +.-..+++..|=|.++.   .-++..|-.-++|||++.-.-.........  ....|.......+  .
T Consensus        53 ~Adgyar~s---g~~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~tk~  124 (548)
T PRK08978         53 AAIGYARAT---GKVGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIGTDA--FQEIDVLGLSLACTKH  124 (548)
T ss_pred             HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCC--CcccchhccccCceee
Confidence            345555442   22233444446766653   345777888999999998643321100000  0111222222222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++..++++|++.++.. .||+.|++...
T Consensus       125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  160 (548)
T PRK08978        125 SFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPKD  160 (548)
T ss_pred             EEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence            44664  6889999999999988886 49999999753

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=86.58  E-value=6.5  Score=41.94  Aligned_cols=105  Identities=25%  Similarity=0.324  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+.+.   +.-..+++..|=|.++.   .-++..|-.-++|||+|.-.-.......  ..+...|.......+  .
T Consensus        84 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~d~~~l~~~~tk~  155 (612)
T PRK07789         84 AAEGYAQAT---GRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGT--DAFQEADIVGITMPITKH  155 (612)
T ss_pred             HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC--CcCcccchhhhhhcceeE
Confidence            445555442   22233444456666553   3457778888999999986433211100  011112333332222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++.+++++|+..++.+ .||+.|++..+
T Consensus       156 s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D  191 (612)
T PRK07789        156 NFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPKD  191 (612)
T ss_pred             EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence            33554  7889999999999988876 58999999754

>PRK08322 acetolactate synthase; Reviewed

Probab=86.49  E-value=5.4  Score=41.72  Aligned_cols=105  Identities=19%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+.+.   +.-..+++..|=|.++.   .-++..|-.-++|+|+|.-+=.......  ..+...|.......+  .
T Consensus        53 ~A~gyar~t---g~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~  124 (547)
T PRK08322         53 MAATYGRLT---GKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDVVAMMAPLTKW  124 (547)
T ss_pred             HHHHHHHhh---CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCC--CccccccHHHHhhhheeE
Confidence            455555442   22223344446666543   2457778889999999986433211111  011112333322221  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++.+++++|++.+... .||+.|++...
T Consensus       125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  160 (547)
T PRK08322        125 TRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED  160 (547)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence            34554  6889999999999998886 48999999754

>PLN02470 acetolactate synthase

Probab=86.38  E-value=5.7  Score=42.08  Aligned_cols=105  Identities=27%  Similarity=0.281  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+...   +.-..+++..|=|.++-   .-++..|-.-+.|||+|.-.-......  ...+...|.......+  .
T Consensus        66 ~Adgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~  137 (585)
T PLN02470         66 AAEGYAKAS---GKVGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSITKH  137 (585)
T ss_pred             HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhheEE
Confidence            455555542   22234445557777653   245777888999999998644321100  0011112222222221  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..+|+  +++++.+++++|++.++.++ ||+.|++..+
T Consensus       138 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D  173 (585)
T PLN02470        138 NYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPKD  173 (585)
T ss_pred             EEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence            34553  78899999999999998875 9999999754

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=86.27  E-value=5.8  Score=41.87  Aligned_cols=106  Identities=20%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--  104 (355)
                      -+|.|.+.+.   +.-.++++..|=|.++.   .-++..|-.-++|||+|.-.-.........  .-..|.......+  
T Consensus        67 ~~A~gyar~t---g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~--~q~~d~~~l~~~~tk  138 (571)
T PRK07710         67 HAAEGYARIS---GKPGVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATSVIGSDA--FQEADIMGITMPVTK  138 (571)
T ss_pred             HHHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCccccCCCC--ccccchhhhhhcccc
Confidence            3455555442   22233444446766543   245677778899999998754422111000  1111332222221  


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ...+|  .+++++...+++|++.++.+ .||+.|++..+
T Consensus       139 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D  175 (571)
T PRK07710        139 HNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPKD  175 (571)
T ss_pred             eEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence            23455  46888999999999988877 49999999764

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=85.62  E-value=7.3  Score=41.12  Aligned_cols=103  Identities=13%  Similarity=-0.044  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc-
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI-  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~-  104 (355)
                      +|.|.+.+     .+++.||+.  |=|.++-   .-++..|..-++|+|+|.-+-.........  +...|.......+ 
T Consensus        56 ~Adgyar~-----tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~--~Q~~d~~~l~~~it  125 (574)
T PRK09124         56 AAGAEAQL-----TGELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGY--FQETHPQELFRECS  125 (574)
T ss_pred             HHHHHHHh-----hCCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCCC--ccccChhhhcccce
Confidence            45555544     245566654  5555542   234677778899999998753321110000  1111222222222 


Q ss_pred             -ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        105 -PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       105 -~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                       ...+|+  +++++.+++++|++.+...+||+.|++..+
T Consensus       126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D  162 (574)
T PRK09124        126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLPGD  162 (574)
T ss_pred             eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence             233454  678888889999998888889999998643

>PRK11269 glyoxylate carboligase; Provisional

Probab=85.38  E-value=7.3  Score=41.32  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=56.1

Q ss_pred             EEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--ceEEEeCCCHHHHHHHHH
Q psy14560         45 CFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLAVREASK  122 (355)
Q Consensus        45 vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~v~~a~~  122 (355)
                      +++..|=|.++.   .-++..|-.-+.|||+|.-+-.........  +...|.......+  ...+|  .+++++.++++
T Consensus        72 ~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~d~~~l~~~itk~s~~v--~~~~~~~~~i~  144 (591)
T PRK11269         72 CIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIESIAKPVTKWAVTV--REPALVPRVFQ  144 (591)
T ss_pred             EEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccChhhHhhcceeEEEEc--CCHHHHHHHHH
Confidence            344447766653   235777888999999998754422111111  1112333332222  23455  46888999999


Q ss_pred             HHHHHHHcCC-CCeEEEEEee
Q psy14560        123 FAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       123 ~Al~~ar~~~-gP~lIev~t~  142 (355)
                      +|++.++..+ ||+.|++..+
T Consensus       145 ~A~~~A~~~~~GPV~l~iP~D  165 (591)
T PRK11269        145 QAFHLMRSGRPGPVLIDLPFD  165 (591)
T ss_pred             HHHHHHhhCCCCeEEEEeChh
Confidence            9999998764 8999999754

>PRK08266 hypothetical protein; Provisional

Probab=85.10  E-value=6.7  Score=41.02  Aligned_cols=106  Identities=19%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccC-CCccHhhhcCC--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSS-ASTDYYTRGDY--  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~-~~~d~~~~A~G--  103 (355)
                      +|.|.+...   +.-..+++..|=|.++.   .-++..|-.-+.|+|+|+-.=. ..... ...+. ...|.......  
T Consensus        58 ~A~gyar~t---g~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~-~~~~~~~~~d~~~~~~~~t  130 (542)
T PRK08266         58 MAFGYARST---GRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGK-GRGHLHEMPDQLATLRSFT  130 (542)
T ss_pred             HHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccC-CCCcceecccHhhHHhhhc
Confidence            455555442   22223344457777653   2457778889999999986422 11110 00000 01233332221  


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      -...+|+  +++++.+++++|++.++.. .||+.|++..+
T Consensus       131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d  168 (542)
T PRK08266        131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD  168 (542)
T ss_pred             ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence            2345664  5788899999999888774 68999999764

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=85.02  E-value=7.7  Score=41.05  Aligned_cols=92  Identities=17%  Similarity=0.155  Sum_probs=55.6

Q ss_pred             CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCccHhhhcCCcc--eEEEeCCCHHHHHH
Q psy14560         43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSASTDYYTRGDYIP--GIWVDGMDVLAVRE  119 (355)
Q Consensus        43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~A~G~~--~~~VdG~D~~~v~~  119 (355)
                      ..+++..|=|.++-   .-++..|-..++|||+|.-.-.. .....   .+...|.......+-  ..+|.  +++++.+
T Consensus        65 gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~id~~~~~~~vtk~~~~v~--~~~~~~~  136 (575)
T TIGR02720        65 GVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMNMD---TFQEMNENPIYADVAVYNRTAM--TAESLPH  136 (575)
T ss_pred             eEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CcceechhhhhhhcceEEEEeC--CHHHHHH
Confidence            34444557766543   23577788899999999875432 11110   011112222222222  23443  5778888


Q ss_pred             HHHHHHHHHHcCCCCeEEEEEee
Q psy14560        120 ASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       120 a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .+++|++.+...+||+.|++..+
T Consensus       137 ~i~~A~~~A~~~~GPV~l~iP~D  159 (575)
T TIGR02720       137 VIDEAIRRAYAHNGVAVVTIPVD  159 (575)
T ss_pred             HHHHHHHHHhhCCCCEEEEECcc
Confidence            89999988888899999999765

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PTZ00089 transketolase; Provisional

Probab=84.86  E-value=5.8  Score=42.92  Aligned_cols=92  Identities=20%  Similarity=0.165  Sum_probs=57.6

Q ss_pred             CCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcceEEE-eCCCHHHHHHH
Q psy14560         42 GGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWV-DGMDVLAVREA  120 (355)
Q Consensus        42 ~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~~~V-dG~D~~~v~~a  120 (355)
                      -+++++.+.  .+.+ -.++.+..++..++||+||....+.+.+.......+..|++-+ ..+|.+.| .=.|..++..+
T Consensus       428 ~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~l-R~iPn~~V~~PaD~~E~~~~  503 (661)
T PTZ00089        428 FIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALL-RATPNLLVIRPADGTETSGA  503 (661)
T ss_pred             CeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHH-hcCCCcEEEecCCHHHHHHH
Confidence            356666653  4544 6777899999999999999998887654333333333454432 13444433 12467777776


Q ss_pred             HHHHHHHHHcCCCCeEEEEE
Q psy14560        121 SKFAVNYASSGKGPLVLEVV  140 (355)
Q Consensus       121 ~~~Al~~ar~~~gP~lIev~  140 (355)
                      ++.|++   ..++|+.|-..
T Consensus       504 l~~al~---~~~gP~~irl~  520 (661)
T PTZ00089        504 YALALA---NAKTPTILCLS  520 (661)
T ss_pred             HHHHHH---cCCCCEEEEec
Confidence            666653   35689998543

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=84.79  E-value=6.3  Score=39.59  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             ccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee-ccccCCCccHhh-h
Q psy14560         23 GAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS-AERSSASTDYYT-R  100 (355)
Q Consensus        23 G~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~-~~~~~~~~d~~~-~  100 (355)
                      ..++..++|++++     .-+..-...|.|-+-   .+|.|..|+-..+|+++++.+........ ...  ...|+.. +
T Consensus        57 ~~a~s~v~GA~~a-----Gar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r  126 (365)
T COG0674          57 IGAISAVIGASYA-----GARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAAR  126 (365)
T ss_pred             HHHHHHHHHHHhh-----CcceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHH
Confidence            3567778898887     334455556666543   35789999999999999988877433211 111  1123322 2


Q ss_pred             cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        101 GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       101 A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      --|++-+...  |+.+.+...-.|.+.|.+..-|+++-..-.
T Consensus       127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~  166 (365)
T COG0674         127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGF  166 (365)
T ss_pred             ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence            2377777665  677777777778888877778988865543

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=84.26  E-value=7.4  Score=41.25  Aligned_cols=106  Identities=21%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--c
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--I  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~  104 (355)
                      -+|.|.+.+.   +.-..+++..|=|.++.   .-++..|-..+.|||+|.-.-......  .......|.......  -
T Consensus        52 ~~Adgyar~t---g~~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~tk  123 (586)
T PRK06276         52 HAADGYARAS---GKVGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPITK  123 (586)
T ss_pred             HHHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhhcc
Confidence            3455555542   22233444456776653   245777888999999998532211100  000111133232222  2


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ...+|+  +++++..++++|++.|... .||+.|++..+
T Consensus       124 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D  160 (586)
T PRK06276        124 HNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD  160 (586)
T ss_pred             eEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence            234554  6788999999999998876 48999999754

>PRK08617 acetolactate synthase; Reviewed

Probab=84.26  E-value=7.4  Score=40.82  Aligned_cols=94  Identities=20%  Similarity=0.064  Sum_probs=55.9

Q ss_pred             CCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHH
Q psy14560         42 GGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAV  117 (355)
Q Consensus        42 ~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v  117 (355)
                      +++.+|+  .|=|.++.   .-++..|-.-+.|||+|.-...........  +...|.......  -...+|+  +++++
T Consensus        66 g~~gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~~--~q~~d~~~l~~~~tk~~~~v~--~~~~~  138 (552)
T PRK08617         66 GKPGVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKRT--HQSMDNVALFRPITKYSAEVQ--DPDNL  138 (552)
T ss_pred             CCCEEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCCC--ccccchhhhhhhhcceEEEeC--CHHHH
Confidence            4444444  47777653   235777888999999998643311100000  111122222112  1244554  68899


Q ss_pred             HHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        118 REASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       118 ~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      .+++++|++.+... .||+.|++..+
T Consensus       139 ~~~i~~A~~~a~~~~~GPV~l~iP~d  164 (552)
T PRK08617        139 SEVLANAFRAAESGRPGAAFVSLPQD  164 (552)
T ss_pred             HHHHHHHHHHHccCCCCcEEEeChhh
Confidence            99999999988876 48999999754

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=84.07  E-value=8  Score=40.77  Aligned_cols=92  Identities=17%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cceEEEeCCCHHHHHHHH
Q psy14560         44 VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREAS  121 (355)
Q Consensus        44 ~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~~~~VdG~D~~~v~~a~  121 (355)
                      ++++..|=|.++.   .-++..|-..+.|||+|.-.-.........  ....|.......  -...+|.  +++++...+
T Consensus        70 v~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~--~q~~d~~~l~~~vtk~s~~v~--~~~~~~~~l  142 (574)
T PRK06882         70 CVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTDA--FQECDMLGISRPVVKHSFIVK--NAEDIPSTI  142 (574)
T ss_pred             EEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccchhhhhhcccceEEEeC--CHHHHHHHH
Confidence            3444447766543   235677888999999998654322110000  111233322222  1244564  688889999


Q ss_pred             HHHHHHHHcC-CCCeEEEEEee
Q psy14560        122 KFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       122 ~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ++|++.++.. .||+.|++...
T Consensus       143 ~~A~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06882        143 KKAFYIASTGRPGPVVIDIPKD  164 (574)
T ss_pred             HHHHHHHhcCCCCCEEEecCHH
Confidence            9999888775 59999999764

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=84.05  E-value=6.6  Score=41.77  Aligned_cols=105  Identities=23%  Similarity=0.232  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.+...   +.-..+++..|=|.++.   .-++..|-..+.|||+|.-+-.......  ..+...|.......+  .
T Consensus        64 mAdgyar~t---g~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~  135 (595)
T PRK09107         64 AAEGYARST---GKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH  135 (595)
T ss_pred             HHHHHHHHh---CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE
Confidence            455555432   22233444457777653   2357778889999999987544221110  011112322222221  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++.+++++|++.++.. .||+.|++..+
T Consensus       136 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D  171 (595)
T PRK09107        136 NWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPKD  171 (595)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence            33554  6889999999999999887 49999998754

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=84.02  E-value=8.8  Score=40.56  Aligned_cols=105  Identities=24%  Similarity=0.298  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|-|.+...   +.-.++++..|=|.++.   .-++..|-..+.|||+|.-.-......  ...+...|.......+  .
T Consensus        57 mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~  128 (572)
T PRK08979         57 MADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVVKH  128 (572)
T ss_pred             HHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhceeE
Confidence            455555542   22233333447776553   234677778899999997643321100  0011112333322222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..+|+  +++++...+++|++.|+.++ ||+.|++..+
T Consensus       129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D  164 (572)
T PRK08979        129 SFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD  164 (572)
T ss_pred             EEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence            34554  68899999999999988865 9999998754

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=83.85  E-value=9.3  Score=39.94  Aligned_cols=93  Identities=23%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             CeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc--eEEEeCCCHHHHHHH
Q psy14560         43 GVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP--GIWVDGMDVLAVREA  120 (355)
Q Consensus        43 ~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~--~~~VdG~D~~~v~~a  120 (355)
                      ..+++..|=|.++-   .-++..|-..+.|+|+|+-.-.......  ..+...|.......+.  ..++  .+++++.+.
T Consensus        63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~  135 (539)
T TIGR02418        63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRADLLK--LTHQSMDNVALFRPITKYSAEV--QDPDALSEV  135 (539)
T ss_pred             eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCccccccc--Ccccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence            33444456666543   3457778889999999987433111000  0111122222222222  2344  478899999


Q ss_pred             HHHHHHHHHcC-CCCeEEEEEee
Q psy14560        121 SKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       121 ~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      +++|++.++.. .||+.|++..+
T Consensus       136 ~~~A~~~a~~~~~GPV~l~iP~d  158 (539)
T TIGR02418       136 VANAFRAAESGKPGAAFVSLPQD  158 (539)
T ss_pred             HHHHHHHHhcCCCCCEEEEcChh
Confidence            99999888876 48999999764

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=83.63  E-value=10  Score=39.54  Aligned_cols=106  Identities=15%  Similarity=0.023  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+.+.   +.-..+++..|=|.++   ..-++..|-.-+.|||+|.-.-.+........+ ...|.......+  .
T Consensus        63 ~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~  135 (530)
T PRK07092         63 MADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW  135 (530)
T ss_pred             HHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence            455555542   2223333344666653   234577888899999988764332211000000 111222221111  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..+|  .+++++.+++++|++.++..+ ||+.|++..+
T Consensus       136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d  171 (530)
T PRK07092        136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD  171 (530)
T ss_pred             eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence            3344  468899999999999888874 7999999754

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=83.40  E-value=5.4  Score=42.42  Aligned_cols=105  Identities=18%  Similarity=0.106  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc---
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI---  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~---  104 (355)
                      +|-|.+.+.   +.-..+++..|=|+++.   .-++..|-.-++|||+|.-+=.....  ....+...|.......+   
T Consensus        57 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~k  128 (597)
T PRK08273         57 MAVAHAKFT---GEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAGA  128 (597)
T ss_pred             HHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHHH
Confidence            455555442   22233444457777653   23567788899999999853221100  00011112222222222   


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ...+|+  +++++.+++++|++.+...+||+.|++..+
T Consensus       129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D  164 (597)
T PRK08273        129 FVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND  164 (597)
T ss_pred             HeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence            234554  688899999999999988889999999765

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=83.36  E-value=9.8  Score=39.95  Aligned_cols=105  Identities=21%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|.|.+...   +.-..+++..|=|.++-   .-++..|-.-++|||+|.-.-.......  ......|.......  ..
T Consensus        54 ~Adgyar~t---g~~gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~  125 (558)
T TIGR00118        54 AADGYARAS---GKVGVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTSLIGS--DAFQEADILGITMPITKH  125 (558)
T ss_pred             HHHHHHHHh---CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCccccCC--CCCcccChhhhhcCccce
Confidence            455555442   22234455557776543   3457778889999999986422111000  00111133332222  23


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|+  +++++.+.+++|++.+... .||+.|++..+
T Consensus       126 ~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d  161 (558)
T TIGR00118       126 SFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPKD  161 (558)
T ss_pred             eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence            45664  6888999999999988887 48999999754

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=82.72  E-value=8.5  Score=41.62  Aligned_cols=77  Identities=22%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCe
Q psy14560         58 QNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPL  135 (355)
Q Consensus        58 ~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~  135 (355)
                      -.++++..++..++||++|....+++.+.......+..|++-. +. |+..++-  .|..++..+++.|++   ..++|+
T Consensus       434 r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~P--aD~~E~~~~~~~a~~---~~~gP~  508 (653)
T TIGR00232       434 YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRP--CDGNETAAAWKYALE---SQDGPT  508 (653)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh---cCCCcE
Confidence            5567888899999999999988887654332233333444432 22 4444432  367777777776663   357899


Q ss_pred             EEEE
Q psy14560        136 VLEV  139 (355)
Q Consensus       136 lIev  139 (355)
                      +|-.
T Consensus       509 ~irl  512 (653)
T TIGR00232       509 ALIL  512 (653)
T ss_pred             EEEE
Confidence            8844

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=82.64  E-value=9.1  Score=41.11  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG  106 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~  106 (355)
                      +.|.|+|++     .-+++++++.  .+.+-.+-...+-++..++||++++...++. ...........|++-. ..+|+
T Consensus       366 g~AaGlA~~-----G~~Pvv~~~a--~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~l-r~iPg  436 (617)
T TIGR00204       366 TFAAGMAIE-----GYKPFVAIYS--TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISYL-RCIPN  436 (617)
T ss_pred             HHHHHHHHC-----CCEEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHHH-hcCCC
Confidence            345565542     3466666653  3444222233466788999999998877653 1111122222344332 24454


Q ss_pred             EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      ++| .=.|+.++..+++.|++   ..++|++|-.
T Consensus       437 l~V~~Psd~~e~~~~l~~a~~---~~~~Pv~ir~  467 (617)
T TIGR00204       437 MVIMAPSDENELRQMLYTGYH---YDDGPIAVRY  467 (617)
T ss_pred             cEEEeeCCHHHHHHHHHHHHh---CCCCCEEEEE
Confidence            433 22467777777776663   2348998844

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=82.50  E-value=12  Score=39.49  Aligned_cols=105  Identities=25%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.+...   +.-..+++..|=|.++.   .-+|..|-.-+.|||+|.-.-......  .......|.......+  .
T Consensus        60 ~Adgyar~t---g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~  131 (561)
T PRK06048         60 AADGYARAT---GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPITKH  131 (561)
T ss_pred             HHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcceE
Confidence            455555442   22233444557777653   245777888999999997532211100  0001112333322222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|.  +++++.+++++|++.++.. .||+.|++..+
T Consensus       132 s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d  167 (561)
T PRK06048        132 NYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPKD  167 (561)
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence            34554  6888999999999988876 58999999753

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=82.16  E-value=12  Score=39.63  Aligned_cols=104  Identities=20%  Similarity=0.240  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCccHhhhcCC--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSASTDYYTRGDY--I  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~A~G--~  104 (355)
                      +|-|.+...   +.-..+++..|=|.++.   .-++..|-..++|||+|.-+-.. .....   .+...|.......  .
T Consensus        63 ~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~itk  133 (566)
T PRK07282         63 EAEGYAKST---GKLGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD---AFQEADIVGITMPITK  133 (566)
T ss_pred             HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC---CccccChhchhcCCCc
Confidence            445555432   22334455557777653   23567777889999999875432 11110   0111122222211  1


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ...+|+  +++++.+++++|++.++.++ ||+.|++..+
T Consensus       134 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D  170 (566)
T PRK07282        134 YNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPKD  170 (566)
T ss_pred             eeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence            234554  68889999999999998864 9999998754

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=81.85  E-value=14  Score=37.59  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=69.5

Q ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHh-hhcC
Q psy14560         24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYY-TRGD  102 (355)
Q Consensus        24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~-~~A~  102 (355)
                      .++.+++|++++      +..+++.+-=.+++-  .+|.|..|+-.++|+++++.|=..+.  +........|+. .+..
T Consensus        61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~l--m~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~~~rd~  130 (394)
T PRK08367         61 SAISACVGASAA------GVRTFTATASQGLAL--MHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTISQRDT  130 (394)
T ss_pred             HHHHHHHHHHhh------CCCeEeeeccchHHH--HhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHHhcccc
Confidence            356678888887      444555553333322  45789999999999999885543332  222111112322 2223


Q ss_pred             CcceEEEeCCCHHHHHHHHHHHHHHHHc--CCCCeEEEEEeeeeCCCCC
Q psy14560        103 YIPGIWVDGMDVLAVREASKFAVNYASS--GKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~--~~gP~lIev~t~R~~GHs~  149 (355)
                      |+-.+.  ..|+.++++....|.+.+.+  ..-|+++-....+ .+|+.
T Consensus       131 g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~-~sH~~  176 (394)
T PRK08367        131 GWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFI-LTHTV  176 (394)
T ss_pred             CeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhh-hcCcc
Confidence            544433  36888999888888888874  3469999877754 56654

>PRK05858 hypothetical protein; Provisional

Probab=81.47  E-value=11  Score=39.39  Aligned_cols=103  Identities=14%  Similarity=0.005  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--  103 (355)
                      +|.|.+.+     .+++.+|++  |=|.++.   .-++..|..-+.|||+|.-+-..........+  ..|.......  
T Consensus        57 ~AdGyar~-----tg~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t  126 (542)
T PRK05858         57 AAEAWAKL-----TRVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT  126 (542)
T ss_pred             HHHHHHHh-----cCCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence            45555544     234444444  5555543   34577888899999988754332110000011  1122222211  


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      -...+|+  +++++.+.+++|++.+... .||+.|++..+
T Consensus       127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  164 (542)
T PRK05858        127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPMD  164 (542)
T ss_pred             ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence            2344554  5788999999999888775 58999998753

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=80.09  E-value=15  Score=38.93  Aligned_cols=105  Identities=23%  Similarity=0.244  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|-|.+.+.   +.-..+++..|=|.++.   .-++..|-..++|||+|.-.=......  ...+...|.......  -.
T Consensus        74 ~AdgYar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk~  145 (587)
T PRK06965         74 AADGYARAT---GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIVKH  145 (587)
T ss_pred             HHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCcce
Confidence            455555542   22223444446666543   235677888899999997532111000  000111233222221  12


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ..+|.  +++++.+.+++|++.++.+ .||+.|++..+
T Consensus       146 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D  181 (587)
T PRK06965        146 NFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD  181 (587)
T ss_pred             eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence            44554  6888999999999999887 49999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
3exi_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		3e-68
3exi_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-18
3exe_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		3e-68
3exe_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-18
2ozl_A	365	Human Pyruvate Dehydrogenase S264e Variant Length =		7e-68
2ozl_A	365	Human Pyruvate Dehydrogenase S264e Variant Length =		8e-19
3exf_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		1e-67
3exf_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-18
3exh_C	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		4e-67
3exh_C	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-18
1ni4_A	365	Human Pyruvate Dehydrogenase Length = 365		3e-64
1ni4_A	365	Human Pyruvate Dehydrogenase Length = 365		2e-17
1w85_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1		2e-20
3duf_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-20
3dva_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		5e-20
1w88_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1(		6e-20
1um9_A	367	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		5e-19
2bfe_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		4e-14
2bff_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		1e-13
1dtw_A	400	Human Branched-Chain Alpha-Keto Acid Dehydrogenase		1e-13
2j9f_A	400	Human Branched-Chain Alpha-Ketoacid Dehydrogenase-		1e-13
1x7y_A	400	Crystal Structure Of The Human Mitochondrial Branch		3e-13
1x7z_A	400	Crystal Structure Of The Human Mitochondrial Branch		3e-13
1x7x_A	400	Crystal Structure Of The Human Mitochondrial Branch		3e-13
1x7w_A	400	Crystal Structure Of The Human Mitochondrial Branch		3e-13
1x80_A	400	Crystal Structure Of The Human Mitochondrial Branch		3e-13
2bfc_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		6e-13
2bfd_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		6e-13
1v16_A	400	Crosstalk Between Cofactor Binding And The Phosphor		6e-13
2bfb_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		7e-13
2bp7_A	410	New Crystal Form Of The Pseudomonas Putida Branched		8e-13
1olu_A	400	Roles Of His291-Alpha And His146-Beta' In The Reduc		2e-12
1qs0_A	407	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		3e-12
1v1m_A	400	Crosstalk Between Cofactor Binding And The Phosphor		7e-12
1v11_A	400	Crosstalk Between Cofactor Binding And The Phosphor		2e-11
2jgd_A	933	E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length =		3e-04
2jgd_B	933	E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length =		3e-04
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		3e-04
2xta_A	868	Crystal Structure Of The Suca Domain Of Mycobacteri		4e-04

>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382

Iteration: 1
 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 210 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329

>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
           +A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+IRG
Sbjct: 22  FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
           FCHL  GQ
Sbjct: 82  FCHLCDGQ 89

>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 140/180 (77%), Gaps = 12/180 (6%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 210 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329

>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
           +A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+IRG
Sbjct: 22  FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
           FCHL  GQ
Sbjct: 82  FCHLCDGQ 89

>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365

Iteration: 1
 Score =  254 bits (648), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 12/180 (6%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 192
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 193 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 252
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GH MSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 253 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 312

>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 277 SYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIR 336
           S+A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+IR
Sbjct: 4   SFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIR 63
Query: 337 GFCHLYSGQ 345
           GFCHL  GQ
Sbjct: 64  GFCHLCDGQ 72

>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 140/180 (77%), Gaps = 12/180 (6%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGT+ ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 210 CIFICENNRYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GHSMSDPG ++R            DPI   K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329

>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
           +A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+IRG
Sbjct: 22  FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
           FCHL  GQ
Sbjct: 82  FCHLCDGQ 89

>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  251 bits (641), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 114/180 (63%), Positives = 139/180 (77%), Gaps = 12/180 (6%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 150 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 209
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGT+ ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 210 CIFICENNRYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 269
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GH MSDPG ++R            DPI   K++M+NS LA+V+ELKE
Sbjct: 270 GPILMELQTYRYHGHXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 329

>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
           +A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+IRG
Sbjct: 22  FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 81
Query: 338 FCHLYSGQ 345
           FCHL  GQ
Sbjct: 82  FCHLCDGQ 89

>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365

Iteration: 1
 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/180 (62%), Positives = 134/180 (74%), Gaps = 12/180 (6%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN A LW +P
Sbjct: 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLP 192
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YG GTS ER++ASTDYY RGD+IPG+ VDG D+L VREA++FA  Y  SGK
Sbjct: 193 CIFICENNRYGXGTSVERAAASTDYYKRGDFIPGLRVDGXDILCVREATRFAAAYCRSGK 252
Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP++ E+ TYRY GHS SDPG S+R            DPI   K++ +NS LA+V+ELKE
Sbjct: 253 GPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLASVEELKE 312

>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 277 SYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIR 336
           S+A++ATFE K   LH+L EGP     +T++D L YYR  QT+RR E  A  LYK+K+IR
Sbjct: 4   SFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRXXQTVRRXELKADQLYKQKIIR 63
Query: 337 GFCHLYSGQ 345
           GFCHL  GQ
Sbjct: 64  GFCHLCDGQ 72

>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 21  IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
           I+GAQ     G+A   + +G   V     GDG ++QG  +E  N A  +  P I+V +NN
Sbjct: 143 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN 202
Query: 81  GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
            + + T  E+ + +     +     IPGI VDGMD LAV  A K A   A +G+GP ++E
Sbjct: 203 RFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 262
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
            + +RY  H+MS       D  T ++ K L +E A  D L
Sbjct: 263 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 296

>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 21  IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
           I+GAQ     G+A   + +G   V     GDG ++QG  +E  N A  +  P I+V +NN
Sbjct: 144 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN 203
Query: 81  GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
            + + T  E+ + +     +     IPGI VDGMD LAV  A K A   A +G+GP ++E
Sbjct: 204 RFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 263
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
            + +RY  H+MS       D  T ++ K L +E A  D L
Sbjct: 264 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 297

>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 21  IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
           I+GAQ     G+A   + +G   V     GDG ++QG  +E  N A  +  P I+V +NN
Sbjct: 144 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN 203
Query: 81  GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
            +   T  E+ + +     +     IPGI VDGMD LAV  A K A   A +G+GP ++E
Sbjct: 204 RFAASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 263
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
            + +RY  H+MS       D  T ++ K L +E A  D L
Sbjct: 264 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 297

>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 21  IVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENN 80
           I+GAQ     G+A   + +G   V     GDG ++QG  ++  N A  +  P I+V +NN
Sbjct: 143 IIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNN 202
Query: 81  GYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE 138
            + + T  E+ + +     +     IPGI VDGMD LAV  A K A   A +G+GP ++E
Sbjct: 203 RFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIE 262
Query: 139 VVTYRYSGHSMSDPGTSFRDPITSFKEKMLNSELATVDEL 178
            + +RY  H+MS       D  T ++ K L +E A  D L
Sbjct: 263 TLCFRYGPHTMSG------DDPTRYRSKELENEWAKKDPL 296

>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 14  NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
           NF+     + + VP   G A + +   TG V    +GDGA+++G  +   N A + G P 
Sbjct: 138 NFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPA 197
Query: 74  IYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSG 131
           +++ ENN Y +       + S     +     IPG  VDGMDVLA     K AV  A  G
Sbjct: 198 VFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRG 257
Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFK 164
           +GP ++E+  YRY  HS +D  + +R           DPI  F+
Sbjct: 258 EGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFR 301

>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   HS SD  ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAFR 301

>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   HS SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAYR 301

>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   HS SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAYR 301

>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   HS SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHSTSDDSSAYR 301

>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   H+ SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHNTSDDSSAYR 301

>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   H  SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHDTSDDSSAYR 301

>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   H  SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHETSDDSSAYR 301

>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   H  SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHQTSDDSSAYR 301

>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR   H  SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHHXTSDDSSAYR 301

>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR    S SD  ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301

>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR    S SD  ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301

>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR    S SD  ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301

>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR    S SD  ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAFR 301

>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 14/182 (7%)
Query: 2   QQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFE 61
           +Q  I+ +     F+  +G +  Q     G A A+  KG   +  A  GDGA+ +     
Sbjct: 164 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 223
Query: 62  AYNIAKLWGIPCIYVCENNGYGMGT-SAERSSASTDYYTRGDY--IPGIWVDGMDVLAVR 118
           A   A ++  P I    NN + + T  A     ST +  RG    I  + VDG D +AV 
Sbjct: 224 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVY 283
Query: 119 EASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKM 167
            AS++A   A  G GP ++E VTYR   HS SD  + +R           DPI   K+ +
Sbjct: 284 AASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHL 343
Query: 168 LN 169
           + 
Sbjct: 344 IK 345

>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR    S SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSDDSSAYR 301

>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
Query: 15  FYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCI 74
           F+  +G +  Q     G A A+  KG   +  A  GDGA+ +     A   A ++  P I
Sbjct: 176 FFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVI 235
Query: 75  YVCENNGYGMGT-SAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYASSG 131
               NN + + T  A     ST +  RG    I  + VDG D +AV  AS++A   A  G
Sbjct: 236 LNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRG 295
Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKML 168
            GP ++E VTYR   HS SD  + +R           DPI   K+ ++
Sbjct: 296 LGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLI 343

>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TYR    S S   ++FR
Sbjct: 272 AVAENQPFLIEAMTYRIGHASTSADSSAFR 301

>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P
Sbjct: 155 RHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECP 214
Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG-----IWVDGMDVLAVREASKFAVNY 127
            I+ C NNGY + T             RG   PG     I VDG DV AV  A+K A   
Sbjct: 215 IIFFCRNNGYAISTPTSEQYRGDGIAARG---PGYGIMSIRVDGNDVFAVYNATKEARRR 271
Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSFR 157
           A +   P ++E +TY     S SD  +++R
Sbjct: 272 AVAENQPFLIEAMTYAIGHASTSDDSSAYR 301

>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 48  LYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYTR-GD 102
           ++GD A + QG   E  N++K  G      + +  NN  G  TS    + ST Y T  G 
Sbjct: 354 IHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGK 413
Query: 103 YI--PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRD-- 158
            +  P   V+  D  AV   ++ A+++ ++ K  + +++V YR  GH+ +D  ++ +   
Sbjct: 414 MVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLM 473
Query: 159 ---------PITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYR---VHGWT 206
                    P   + +K+   ++AT+++  E   +  R  +   D +++ +R   +H +T
Sbjct: 474 YQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL-YRDALDAGDCVVAEWRPMNMHSFT 532
Query: 207 Y 207
           +
Sbjct: 533 W 533

>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 48  LYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYTR-GD 102
           ++GD A + QG   E  N++K  G      + +  NN  G  TS    + ST Y T  G 
Sbjct: 354 IHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGK 413
Query: 103 YI--PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRD-- 158
            +  P   V+  D  AV   ++ A+++ ++ K  + +++V YR  GH+ +D  ++ +   
Sbjct: 414 MVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLM 473
Query: 159 ---------PITSFKEKMLNSELATVDELKEACAVGMRAVMREQDSIISAYR---VHGWT 206
                    P   + +K+   ++AT+++  E   +  R  +   D +++ +R   +H +T
Sbjct: 474 YQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL-YRDALDAGDCVVAEWRPMNMHSFT 532
Query: 207 Y 207
           +
Sbjct: 533 W 533

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 44  VCFALYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYT 99
           V   L+GD A + QG   E  N+A L G      I++  NN  G  T+A   S S++Y T
Sbjct: 524 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPTDSRSSEYCT 582
Query: 100 RGDYI---PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151
               +   P   V+G D  A    ++ AV++  + K  +V++++ YR  GH+  D
Sbjct: 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 637

>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex With Acetyl-Coa (Triclinic Form) Length = 868

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 44  VCFALYGDGA-SNQGQNFEAYNIAKLWGIPC---IYVCENNGYGMGTSAERSSASTDYYT 99
           V   L+GD A + QG   E  N+A L G      I++  NN  G  T+A   S S++Y T
Sbjct: 279 VPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPTDSRSSEYCT 337
Query: 100 RGDYI---PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD 151
               +   P   V+G D  A    ++ AV++  + K  +V++++ YR  GH+  D
Sbjct: 338 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 392

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	1e-103
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	7e-35
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	2e-27
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	4e-60
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	1e-10
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	5e-55
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	2e-07
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	1e-50
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	2e-08
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	1e-50
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	3e-08

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score =  308 bits (791), Expect = e-103
 Identities = 116/180 (64%), Positives = 139/180 (77%), Gaps = 12/180 (6%)

Query: 13  KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP 72
           KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ FEAYN+A LW +P
Sbjct: 133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLP 192

Query: 73  CIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGK 132
           CI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA++FA  Y  SGK
Sbjct: 193 CIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGK 252

Query: 133 GPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELKE 180
           GP+++E+ TYRY GH MSDPG S+R            DPI   K++M+NS LA+V+ELKE
Sbjct: 253 GPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 312

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score =  130 bits (328), Expect = 7e-35
 Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 12/85 (14%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EAC VG+ A +   D +I+AYR HG+T+  G+SV  +L+ELTGR+ GC            
Sbjct: 73  EACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGC------------ 120

Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQ 264
           AKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 121 AKGKGGSMHMYAKNFYGGNGIVGAQ 145

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score =  109 bits (275), Expect = 2e-27
 Identities = 39/70 (55%), Positives = 50/70 (71%)

Query: 276 RSYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVI 335
            S+A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+I
Sbjct: 3   GSFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKII 62

Query: 336 RGFCHLYSGQ 345
           RGFCHL  GQ
Sbjct: 63  RGFCHLCDGQ 72

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367

 Score =  196 bits (501), Expect = 4e-60
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 8   INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
                 NF+     + + VP   G A + +   TG V    +GDGA+++G  +   N A 
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191

Query: 68  LWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD-Y-IPGIWVDGMDVLAVREASKFAV 125
           + G P +++ ENN Y +       + S     +   + IPG  VDGMDVLA     K AV
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV 251

Query: 126 NYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELAT 174
             A  G+GP ++E+  YRY  HS +D  + +R           DPI  F+  +    L  
Sbjct: 252 ERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWN 311

Query: 175 VDELKE 180
            +  ++
Sbjct: 312 EEWEED 317

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 180 EACAVGMRAVMR-EQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
           EA  V +   +R   D +   YR HG    +G+ +  +L ++   +              
Sbjct: 74  EAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKAD------------ 121

Query: 239 CAKGKGGSMHMYAK--NFYGGNGIVGAQTL 266
             KG+    H  +K  NF+     + +   
Sbjct: 122 PNKGRQMPEHPGSKALNFFTVASPIASHVP 151

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368

 Score =  183 bits (466), Expect = 5e-55
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 10  PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW 69
           P   N      I+GAQ     G+A   + +G   V     GDG ++QG  +E  N A  +
Sbjct: 132 PEGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAF 191

Query: 70  GIPCIYVCENNGYGMGTSAERSSASTDYYTRGD-Y-IPGIWVDGMDVLAVREASKFAVNY 127
             P I+V +NN + + T  E+ + +     +     IPGI VDGMD LAV  A K A   
Sbjct: 192 KAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARER 251

Query: 128 ASSGKGPLVLEVVTYRYSGHSMS--DPGT----------SFRDPITSFKEKMLNSELATV 175
           A +G+GP ++E + +RY  H+MS  DP            + +DP+  F++ +    L + 
Sbjct: 252 AINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSE 311

Query: 176 DELKE 180
           +E   
Sbjct: 312 EEENN 316

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 19/87 (21%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA  +     + ++D I+  YR        G+ ++       G                 
Sbjct: 82  EASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGH---------------- 125

Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQTL 266
               G  +     N      I+GAQ +
Sbjct: 126 --FHGNQIP-EGVNVLPPQIIIGAQYI 149

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407

 Score =  173 bits (440), Expect = 1e-50
 Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 14/201 (6%)

Query: 8   INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
            +     F+  +G +  Q     G A A+  KG   +  A  GDGA+ +     A   A 
Sbjct: 169 YSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAH 228

Query: 68  LWGIPCIYVCENNGYGMGTSAERSSASTD-YYTRGD-Y-IPGIWVDGMDVLAVREASKFA 124
           ++  P I    NN + + T    +   +  +  RG    I  + VDG D +AV  AS++A
Sbjct: 229 VYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288

Query: 125 VNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELA 173
              A  G GP ++E VTYR   HS SD  + +R           DPI   K+ ++     
Sbjct: 289 AERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHW 348

Query: 174 TVDELKEACAVGMRAVMREQD 194
           + +E +   A    AV+  Q 
Sbjct: 349 SEEEHQATTAEFEAAVIAAQK 369

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 14/89 (15%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA   G    +   D     YR         VS+  ++ +L                   
Sbjct: 112 EAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERD------------P 159

Query: 240 AKGKGGSMHMYAK--NFYGGNGIVGAQTL 266
            KG+   +    +   F+  +G +  Q +
Sbjct: 160 LKGRQLPIMYSVREAGFFTISGNLATQFV 188

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400

 Score =  172 bits (439), Expect = 1e-50
 Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 14/188 (7%)

Query: 8   INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAK 67
                ++F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A 
Sbjct: 150 YGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAA 209

Query: 68  LWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD-Y-IPGIWVDGMDVLAVREASKFAV 125
               P I+ C NNGY + T             RG  Y I  I VDG DV AV  A+K A 
Sbjct: 210 TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEAR 269

Query: 126 NYASSGKGPLVLEVVTYRYSGHSMSDPGTSFRD------------PITSFKEKMLNSELA 173
             A +   P ++E +TYR    S SD  ++FR             PI+  +  +L+    
Sbjct: 270 RRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWW 329

Query: 174 TVDELKEA 181
             ++ K  
Sbjct: 330 DEEQEKAW 337

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 14/89 (15%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           E   VG  A +   D +    R  G        +   +++  G  +              
Sbjct: 93  EGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD------------L 140

Query: 240 AKGKGGSMHMYAK--NFYGGNGIVGAQTL 266
            KG+   +H   K  +F   +  +  Q  
Sbjct: 141 GKGRQMPVHYGCKERHFVTISSPLATQIP 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	100.0
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	100.0
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	100.0
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	100.0
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	100.0
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	99.97
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.96
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	99.95
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	99.87
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	99.87
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	99.86
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	99.86
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	99.86
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	99.85
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	99.85
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	99.85
3uk1_A	711	Transketolase; structural genomics, seattle struct	99.85
3l84_A	632	Transketolase; TKT, structural genomics, center fo	99.85
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	99.84
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	99.83
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	99.83
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	99.83
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	99.74
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	99.7
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	99.68
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	99.65
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	99.65
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	99.65
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	99.64
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	99.64
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	99.64
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	99.64
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	99.64
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	99.63
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	99.63
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	99.63
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	99.61
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	99.6
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	99.59
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	99.57
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	99.57
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	99.56
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	99.5
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.48
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.39
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	99.27
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.27
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	99.21
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	98.92
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	98.87
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	98.81
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	98.35
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	98.34
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	98.25
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	91.67
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	90.61
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	90.48
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	90.46
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	90.27
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	90.23
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	89.49
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	89.12
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	88.55
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	88.33
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	87.53
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	87.5
3l84_A	632	Transketolase; TKT, structural genomics, center fo	86.74
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	86.57
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	86.4
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	86.36
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	86.33
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	86.14
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	85.92
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	85.7
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	85.55
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	84.95
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	84.46
3uk1_A	711	Transketolase; structural genomics, seattle struct	84.0
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	83.74
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	83.66
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	83.62
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	83.34
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	82.19
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	81.33

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=100.00  E-value=1.2e-36  Score=299.99  Aligned_cols=179  Identities=65%  Similarity=1.173  Sum_probs=165.4

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSS   92 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~   92 (355)
                      .++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+|++++||+||||+||+|+++++.....
T Consensus       133 ~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~  212 (365)
T 2ozl_A          133 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA  212 (365)
T ss_dssp             TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHC
T ss_pred             cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCccccc
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999998776666


Q ss_pred             CCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------cch
Q psy14560         93 ASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------DPI  160 (355)
Q Consensus        93 ~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------DpI  160 (355)
                      ..++|+++|+|+++++|||+|+++|++++++|+++++++++|+|||+.|+|..||+++||+..||            |||
T Consensus       213 ~~~~~~~ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi  292 (365)
T 2ozl_A          213 ASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPI  292 (365)
T ss_dssp             SCCCGGGTTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHH
T ss_pred             CCCCHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHH
Confidence            67889989999999999999999999999999999999999999999999999999999877687            899


Q ss_pred             hHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        161 TSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       161 r~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                      .+|+++|+++|++++++++++.++....+.+
T Consensus       293 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~  323 (365)
T 2ozl_A          293 MLLKDRMVNSNLASVEELKEIDVEVRKEIED  323 (365)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887776554443

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=100.00  E-value=1.2e-35  Score=293.18  Aligned_cols=182  Identities=30%  Similarity=0.497  Sum_probs=163.0

Q ss_pred             CCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccc
Q psy14560         11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAER   90 (355)
Q Consensus        11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~   90 (355)
                      ...++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.++|+|++|++++||+||||+||+|+++++...
T Consensus       133 ~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~  212 (368)
T 1w85_A          133 EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEK  212 (368)
T ss_dssp             TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGG
T ss_pred             cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceecccc
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCC-CCCCCccee----------
Q psy14560         91 SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHS-MSDPGTSFR----------  157 (355)
Q Consensus        91 ~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs-~~D~~~~YR----------  157 (355)
                      ..+.++++++  |+|+++++|||+|+++|++++++|++++|++++|+|||+.|+|..||+ ++|++..||          
T Consensus       213 ~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~  292 (368)
T 1w85_A          213 QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK  292 (368)
T ss_dssp             TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc
Confidence            6677889887  479999999999999999999999999999999999999999999999 988788887          


Q ss_pred             -cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcc
Q psy14560        158 -DPITSFKEKMLNSELATVDELKEACAVGMRAVMRE  192 (355)
Q Consensus       158 -DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~  192 (355)
                       |||.+|+++|++.|++++++++++.++....+.++
T Consensus       293 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a  328 (368)
T 1w85_A          293 KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEA  328 (368)
T ss_dssp             TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999988887776555543

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=100.00  E-value=2.4e-35  Score=294.38  Aligned_cols=180  Identities=31%  Similarity=0.427  Sum_probs=165.2

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS   91 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~   91 (355)
                      ..++.+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.++|+|++|++|+||+||||+||+|+++++....
T Consensus       173 ~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~  252 (407)
T 1qs0_A          173 EAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIA  252 (407)
T ss_dssp             GGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGG
T ss_pred             ccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             C-CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----------
Q psy14560         92 S-ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------  157 (355)
Q Consensus        92 ~-~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-----------  157 (355)
                      . ..++++++  |+|+++++|||+|+++|++++++|++++|++++|+|||+.|+|..||+++|++..||           
T Consensus       253 ~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~~  332 (407)
T 1qs0_A          253 GGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG  332 (407)
T ss_dssp             TTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTC
T ss_pred             cCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhcC
Confidence            5 46788876  589999999999999999999999999999999999999999999999999888887           


Q ss_pred             cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        158 DPITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       158 DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                      |||.+|+++|++.|++++++++++.++....+.+
T Consensus       333 DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~  366 (407)
T 1qs0_A          333 DPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA  366 (407)
T ss_dssp             CHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887776544443

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=100.00  E-value=4.2e-34  Score=284.96  Aligned_cols=174  Identities=29%  Similarity=0.471  Sum_probs=151.0

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS   91 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~   91 (355)
                      ..++.+++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.+||+|++|++++||+|+||+||+|+++++....
T Consensus       154 ~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~  233 (400)
T 2bfd_A          154 ERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ  233 (400)
T ss_dssp             TTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGT
T ss_pred             ccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeeccccc
Confidence            35577888999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------
Q psy14560         92 SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------  157 (355)
Q Consensus        92 ~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------  157 (355)
                      .+.++++++  |+|+++++|||+|+++|++|+++|++++|++++|+|||+.|+|..||+++|++..||            
T Consensus       234 ~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~  313 (400)
T 2bfd_A          234 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQD  313 (400)
T ss_dssp             CSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------C
T ss_pred             CCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcC
Confidence            777889887  479999999999999999999999999999999999999999999999998877787            


Q ss_pred             cchhHHHHHHHHhhhhhhhhHHHHHHhh
Q psy14560        158 DPITSFKEKMLNSELATVDELKEACAVG  185 (355)
Q Consensus       158 DpIr~fee~Li~~Gl~t~~e~qEa~qvg  185 (355)
                      |||.+|+++|++.|++++++.+++.++.
T Consensus       314 dPl~~~~~~L~~~g~~~~~~~~~i~~~~  341 (400)
T 2bfd_A          314 HPISRLRHYLLSQGWWDEEQEKAWRKQS  341 (400)
T ss_dssp             CHHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence            6999999999999999988887554443

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=100.00  E-value=1.8e-33  Score=277.49  Aligned_cols=180  Identities=31%  Similarity=0.476  Sum_probs=164.2

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS   91 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~   91 (355)
                      ..++.+.+|++|.++|.|+|+|+|.|+++++++|||++|||++++|.++|+|++|+++++|+|+||.||+|+++++....
T Consensus       136 ~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~  215 (367)
T 1umd_A          136 ALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQ  215 (367)
T ss_dssp             TTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHH
T ss_pred             ccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhc
Confidence            45677789999999999999999999999999999999999999999999999999999999999999999998887666


Q ss_pred             CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee-----------c
Q psy14560         92 SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------D  158 (355)
Q Consensus        92 ~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR-----------D  158 (355)
                      .+.+++.++  |+|+++++|||+|+.+|++++++|+++++++++|+|||+.|+|..||+.+|++..||           |
T Consensus       216 ~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~~d  295 (367)
T 1umd_A          216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKD  295 (367)
T ss_dssp             CSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHHcCC
Confidence            666788887  479999999999999999999999999999999999999999999999999888887           9


Q ss_pred             chhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        159 PITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       159 pIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                      ||.+|+++|+++|++++++++++.++....+.+
T Consensus       296 Pi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~  328 (367)
T 1umd_A          296 PIPRFRRFLEARGLWNEEWEEDVREEIRAELER  328 (367)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998777766544433

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=99.97  E-value=3.2e-31  Score=285.25  Aligned_cols=174  Identities=24%  Similarity=0.221  Sum_probs=153.8

Q ss_pred             ccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEe
Q psy14560         14 NFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCEN   79 (355)
Q Consensus        14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~N   79 (355)
                      ++.+.+++||+++|+|+|+|+|.|+.+          .+.+++|++|||++ ++|.+||+||+|+.++||   +||||+|
T Consensus       239 ~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~N  318 (868)
T 2yic_A          239 SLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVN  318 (868)
T ss_dssp             EECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEE
T ss_pred             eecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEc
Confidence            455678999999999999999999864          56799999999995 899999999999999999   9999999


Q ss_pred             CCCcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560         80 NGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR  157 (355)
Q Consensus        80 N~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR  157 (355)
                      |+|+++++.....+.+++.++  ++|+++++|||+|+++|++|+++|++++|++++|+|||+.|+|..||+++|++..|+
T Consensus       319 N~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~  398 (868)
T 2yic_A          319 NQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ  398 (868)
T ss_dssp             CSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC
T ss_pred             CCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCC
Confidence            999999875544444566665  579999999999999999999999999999999999999999999999999887554


Q ss_pred             -----------cchhHHHHHHHHhhhhhhhhHHHHHHhhHH
Q psy14560        158 -----------DPITSFKEKMLNSELATVDELKEACAVGMR  187 (355)
Q Consensus       158 -----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~  187 (355)
                                 ||+.+|+++|+++|++++++.+++.++...
T Consensus       399 p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~  439 (868)
T 2yic_A          399 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQG  439 (868)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                       899999999999999999998777665533

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.96  E-value=2.1e-30  Score=284.95  Aligned_cols=172  Identities=24%  Similarity=0.235  Sum_probs=152.9

Q ss_pred             ccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCccc-ccccHHHHHHHHHHHcCCC---EEEEEEe
Q psy14560         14 NFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIP---CIYVCEN   79 (355)
Q Consensus        14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LP---vi~Vv~N   79 (355)
                      ++.+.+|+||.++|+|+|+|+|.|+.+          .+..++|++|||+ +++|.+||+||+|+.++||   +||||+|
T Consensus       484 ~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~N  563 (1113)
T 2xt6_A          484 SLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVN  563 (1113)
T ss_dssp             EECCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEE
T ss_pred             eecCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEe
Confidence            455678999999999999999999865          5789999999999 5999999999999999999   9999999


Q ss_pred             CCCcceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560         80 NGYGMGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR  157 (355)
Q Consensus        80 N~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR  157 (355)
                      |+|+++++.....+.+++.++  ++|+++++|||+|+++|++|+++|++++|++++|+|||+.|+|..||+++|++..|+
T Consensus       564 N~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~  643 (1113)
T 2xt6_A          564 NQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ  643 (1113)
T ss_dssp             CSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC
T ss_pred             CCcccccCccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCC
Confidence            999999875534344455555  579999999999999999999999999999999999999999999999999887554


Q ss_pred             -----------cchhHHHHHHHHhhhhhhhhHHHHHHhh
Q psy14560        158 -----------DPITSFKEKMLNSELATVDELKEACAVG  185 (355)
Q Consensus       158 -----------DpIr~fee~Li~~Gl~t~~e~qEa~qvg  185 (355)
                                 ||+.+|+++|+++|++++++++++.++.
T Consensus       644 ~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~  682 (1113)
T 2xt6_A          644 PYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDY  682 (1113)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                       8999999999999999999997766554

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=99.95  E-value=2.6e-28  Score=264.09  Aligned_cols=175  Identities=20%  Similarity=0.215  Sum_probs=137.4

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcC-----CCCeEEEEeCcccc-cccHHHHHHHHHHHcCCC---EEEEEEeCCCccee
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKG-----TGGVCFALYGDGAS-NQGQNFEAYNIAKLWGIP---CIYVCENNGYGMGT   86 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~-----~~~~vv~~~GDGa~-~~G~~~EaL~~Aa~~~LP---vi~Vv~NN~~~~~~   86 (355)
                      ....+++|.++|+|+|+|+|.++.+     .+..+||++|||++ ++|.+||+||+|+.+++|   +|+||+||+|++++
T Consensus       317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist  396 (933)
T 2jgd_A          317 AFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTT  396 (933)
T ss_dssp             CCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred             cccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccC
Confidence            4567899999999999999999874     67899999999997 999999999999999999   99999999999999


Q ss_pred             -eccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------
Q psy14560         87 -SAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------  157 (355)
Q Consensus        87 -~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------  157 (355)
                       +.......+++.++  ++|+|+++|||+|+++|++++++|+++++++++|+|||+.|+|..||+.+|++. ||      
T Consensus       397 ~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~-yr~~~e~~  475 (933)
T 2jgd_A          397 SNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPS-ATQPLMYQ  475 (933)
T ss_dssp             ----------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHH
T ss_pred             CCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchh-hCCHHHHH
Confidence             77765555677766  479999999999999999999999999999999999999999999999998764 64      


Q ss_pred             ------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        158 ------DPITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       158 ------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                            ||+.+|+++|+++|++++++.+++.++....+.+
T Consensus       476 ~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~  515 (933)
T 2jgd_A          476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDA  515 (933)
T ss_dssp             HHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence                  8999999999999999999998888776555443

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=99.87  E-value=3e-22  Score=210.56  Aligned_cols=139  Identities=21%  Similarity=0.249  Sum_probs=121.7

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||+++|.|+|+|+|.++.+          +++.|+|++|||++++|.+||+|++|++++|| +|+||+||+
T Consensus       111 ~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~  190 (651)
T 2e6k_A          111 PGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNR  190 (651)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred             CCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCC
Confidence            4677789999999999999999988654          68999999999999999999999999999999 999999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR  157 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR  157 (355)
                      |+++.+..... .+|+.++  |+||+++ +|||+|++++++++++|.+    .++|+||++.|++.+||+.+|+ ..|+
T Consensus       191 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~-~~~H  263 (651)
T 2e6k_A          191 ISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDS-AKAH  263 (651)
T ss_dssp             EETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTS-GGGT
T ss_pred             ccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccccccc-cccc
Confidence            99988776655 5788876  6899999 9999999999988888764    6789999999999999995444 3454

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=99.87  E-value=4.1e-22  Score=210.47  Aligned_cols=139  Identities=18%  Similarity=0.180  Sum_probs=121.5

Q ss_pred             CCCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEe
Q psy14560         11 SPKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCEN   79 (355)
Q Consensus        11 ~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~N   79 (355)
                      ...++..++|+||+++|.|+|+|+|.++.+          .++.|+|++|||++++|.+||+|++|+.++|| +|+||+|
T Consensus       107 ~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~n  186 (680)
T 1gpu_A          107 ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDD  186 (680)
T ss_dssp             TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEEC
Confidence            355777889999999999999999988653          38899999999999999999999999999999 9999999


Q ss_pred             CCCcceeeccccCCCccHhhh--cCCcceE-EEeCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCC
Q psy14560         80 NGYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGM-DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPG  153 (355)
Q Consensus        80 N~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~  153 (355)
                      |+|+++.+..... .+|+.++  |+||+++ +|||+ |++++++++++|.+   ..++|+||++.|++.+||+.+|+.
T Consensus       187 N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~  260 (680)
T 1gpu_A          187 NKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSH  260 (680)
T ss_dssp             CSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSG
T ss_pred             CCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCC
Confidence            9999988766543 5788876  5799999 99999 99999988888764   357899999999999999977653

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=99.86  E-value=1.3e-21  Score=206.26  Aligned_cols=137  Identities=20%  Similarity=0.214  Sum_probs=119.4

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|+||+++|.|+|+|+|.++.+          .++.|+|++|||++++|.+||+|++|+.++|| +|+||+||
T Consensus       106 ~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN  185 (669)
T 2r8o_A          106 TAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDN  185 (669)
T ss_dssp             STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             CCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECC
Confidence            45778889999999999999999988653          37899999999999999999999999999999 99999999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC-CCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM-SDP  152 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~-~D~  152 (355)
                      +|+++.+..... .+|+.++  |+||+++ +|||+|++++.+++++|.+   ..++|+||++.|++..||+. +++
T Consensus       186 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~  257 (669)
T 2r8o_A          186 GISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGT  257 (669)
T ss_dssp             SEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTS
T ss_pred             CcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCC
Confidence            999988766543 4688776  6899999 9999999999988888764   35789999999999999984 443

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=99.86  E-value=9.4e-22  Score=207.73  Aligned_cols=135  Identities=18%  Similarity=0.152  Sum_probs=118.9

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhc-------------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEE
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK-------------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVC   77 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~-------------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv   77 (355)
                      ..++..++|++|+++|.|+|+|+|.|+.             ..++.|+|++|||++++|.+||++++|+.++|| +|+||
T Consensus       125 ~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~  204 (700)
T 3rim_A          125 TPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFY  204 (700)
T ss_dssp             BTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEE
Confidence            3467778899999999999999999974             457899999999999999999999999999998 99999


Q ss_pred             EeCCCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560         78 ENNGYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus        78 ~NN~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                      +||+|+++.+..... ..++.++  |+||++++| ||+|+++|++|+++|.+   ..++|+||++.|++.+||+..
T Consensus       205 d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~  276 (700)
T 3rim_A          205 DRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNL  276 (700)
T ss_dssp             EECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTT
T ss_pred             ECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCcc
Confidence            999999998876543 5778776  579999999 99999999888887653   368999999999999999853

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.86  E-value=1.6e-21  Score=205.72  Aligned_cols=136  Identities=19%  Similarity=0.160  Sum_probs=120.0

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||+++|.|+|+|+|.++.+          .++.|+|++|||++++|.+||++++|++++|| +|+||+||+
T Consensus       109 pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~  188 (673)
T 1r9j_A          109 PGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNY  188 (673)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            4667789999999999999999998654          58899999999999999999999999999999 999999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceE-EEeC-CCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDG-MDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDP  152 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG-~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~  152 (355)
                      |+++.+..... .+|+.++  |+||+++ +||| +|++++++|+++|.+   ..++|+||++.|.+.+||+.++.
T Consensus       189 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~  259 (673)
T 1r9j_A          189 ISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGT  259 (673)
T ss_dssp             BCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTS
T ss_pred             Cccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCC
Confidence            99988776655 5788876  6899999 9999 999999998887754   36899999999999999985543

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=99.85  E-value=2.4e-21  Score=202.57  Aligned_cols=139  Identities=21%  Similarity=0.266  Sum_probs=117.2

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCC-CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCcceeeccc
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT-GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGTSAER   90 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~-~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~~~~~   90 (355)
                      .++..++|+||+++|+|+|+|+|.++.+. ++.|+|++|||++++|.+||+|++|+.++|| +++|++||+|+++.+...
T Consensus       114 ~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~  193 (616)
T 3mos_A          114 AFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPL  193 (616)
T ss_dssp             TTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTT
T ss_pred             CcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCccc
Confidence            34556789999999999999999886544 6899999999999999999999999999998 777888999999877665


Q ss_pred             cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee
Q psy14560         91 SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR  157 (355)
Q Consensus        91 ~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR  157 (355)
                      ....+++.++  |+||++++|||+|++++.++++++      .++|+||++.|+|.+||+..+++..+.
T Consensus       194 ~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~~~H  256 (616)
T 3mos_A          194 QHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKESWH  256 (616)
T ss_dssp             TTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCSSCT
T ss_pred             ccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCchhhc
Confidence            5555678776  589999999999999888877432      578999999999999998655444444

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=99.85  E-value=2.6e-21  Score=203.66  Aligned_cols=133  Identities=21%  Similarity=0.226  Sum_probs=110.9

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||+++|+|+|+|+|.++.+.          ++.|+|++|||++++|.++|+|++|++++|| +|+|++||+
T Consensus       109 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~  188 (663)
T 3kom_A          109 PGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNN  188 (663)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC
T ss_pred             CCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCC
Confidence            35556889999999999999999986543          7899999999999999999999999999999 889999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEeeeeCCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASS-GKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~R~~GHs~~  150 (355)
                      |+++.+..... .+|+.++  |+||+++ +|||+|++++.+|+++|.    + .++|+||++.|++.+||+..
T Consensus       189 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~----~~~~~P~lI~~~T~kg~G~~~~  256 (663)
T 3kom_A          189 ISIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAH----SQQQKPTLICCKTVIGFGSPEK  256 (663)
T ss_dssp             -----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH----HCSSSCEEEEEECCTTTTCTTT
T ss_pred             cccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHH----hcCCCCEEEEEecccccccCCC
Confidence            99987766543 5788886  6899999 999999998887776654    4 58999999999999999854

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.85  E-value=4.8e-21  Score=202.16  Aligned_cols=135  Identities=22%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|+||+++|.|+|+|+|.++.+          +++.|+|++|||++++|.+||+|++|++++|| +|+|++||
T Consensus       119 ~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN  198 (675)
T 1itz_A          119 TPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDN  198 (675)
T ss_dssp             CTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             CCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECC
Confidence            34667788999999999999999998765          78999999999999999999999999999995 99999999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceE-EEeCC-CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGI-WVDGM-DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~-D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                      +|+++.+..... .+|+.++  |+||+++ +|||+ |++++.+|+++|.+   ..++|+||++.|.+..||+..
T Consensus       199 ~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~  268 (675)
T 1itz_A          199 HISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNK  268 (675)
T ss_dssp             SEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTT
T ss_pred             CccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccc
Confidence            999988776544 6788876  6899999 99999 99999888877653   257899999999999999853

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=99.85  E-value=3.4e-21  Score=203.92  Aligned_cols=133  Identities=20%  Similarity=0.206  Sum_probs=108.2

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||+++|+|+|+|+|.++.+.          ++.|+|++|||++++|.++|+|++|++++|| +|+|++||+
T Consensus       148 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~  227 (711)
T 3uk1_A          148 PGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNG  227 (711)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCC
Confidence            35557889999999999999999986542          7899999999999999999999999999999 999999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceEE-EeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGIW-VDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMS  150 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~-VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~  150 (355)
                      |+++.+..... .+|+.++  |+||++++ |||+|++++.+|+++|    ++.++|+||++.|++.+||+..
T Consensus       228 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A----~~~~~P~lI~v~T~kG~G~~~~  294 (711)
T 3uk1_A          228 ISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKA----KRSDKPSLICCKTRIGNGAATK  294 (711)
T ss_dssp             EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH----TTCSSCEEEEEEC---------
T ss_pred             cccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH----HhCCCCEEEEEccccccCCCCC
Confidence            99987766553 5788886  58999998 9999999887777665    4578999999999999999753

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=99.85  E-value=3.4e-21  Score=201.71  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=117.1

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcC-------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCc
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKG-------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYG   83 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~-------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~   83 (355)
                      ..++..++|+||+++|.|+|+|+|.++.+       .++.|+|++|||++++|.+||+|++|++++|| +|+|++||+|+
T Consensus       106 ~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~  185 (632)
T 3l84_A          106 TLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNIS  185 (632)
T ss_dssp             STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred             CCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence            45667788999999999999999998764       38999999999999999999999999999998 99999999999


Q ss_pred             ceeeccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCC
Q psy14560         84 MGTSAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD  151 (355)
Q Consensus        84 ~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D  151 (355)
                      ++.+..... .+|+.++  |+||++++|||+|++++.+|+++|    ++.++|+||++.|.+.+||+..+
T Consensus       186 i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A----~~~~~P~lI~v~T~kG~G~~~~e  250 (632)
T 3l84_A          186 IEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQA----KKSTKPCLIIAKTTIAKGAGELE  250 (632)
T ss_dssp             TTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHH----HTCSSCEEEEEECCTTTTCGGGT
T ss_pred             cccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHH----HhCCCCEEEEEeeEeeecCCCCC
Confidence            987766543 5788876  689999999999999887776665    45789999999999999998533

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=99.84  E-value=1.6e-20  Score=196.55  Aligned_cols=130  Identities=26%  Similarity=0.257  Sum_probs=103.6

Q ss_pred             ccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCC--
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSA--   93 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~--   93 (355)
                      ..++|+||+++|+|+|+|+|.++++++++|||++|||++++|.+||+|++|+++++|+|+||+||+|+++.+...+..  
T Consensus       117 ~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~  196 (621)
T 2o1s_A          117 VLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHL  196 (621)
T ss_dssp             CSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC--------------
T ss_pred             ccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHH
Confidence            345899999999999999999999999999999999999999999999999999999999999999998866432110  


Q ss_pred             --------------------------------CccH-------hh--hcCCcceE-EEeCCCHHHHHHHHHHHHHHHHcC
Q psy14560         94 --------------------------------STDY-------YT--RGDYIPGI-WVDGMDVLAVREASKFAVNYASSG  131 (355)
Q Consensus        94 --------------------------------~~d~-------~~--~A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~  131 (355)
                                                      ..++       .+  .++|++++ +|||+|++++.+++++|.    +.
T Consensus       197 ~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~  272 (621)
T 2o1s_A          197 AQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR----DL  272 (621)
T ss_dssp             ------------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH----HS
T ss_pred             HhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH----Hc
Confidence                                            0011       22  25799999 999999999888887765    35


Q ss_pred             CCCeEEEEEeeeeCCCCC
Q psy14560        132 KGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       132 ~gP~lIev~t~R~~GHs~  149 (355)
                      ++|+||++.|++.+||+.
T Consensus       273 ~gP~lI~v~t~kg~G~~~  290 (621)
T 2o1s_A          273 KGPQFLHIMTKKGRGYEP  290 (621)
T ss_dssp             CSEEEEEEECCCTTCCCC
T ss_pred             CCCEEEEEEEecccCCCh
Confidence            899999999999999984

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=99.83  E-value=7.6e-21  Score=198.03  Aligned_cols=165  Identities=12%  Similarity=0.150  Sum_probs=123.1

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|..+...++.|+||+++|.|+|++++    .++++|||++|||+++++  +++|++|+++++|+++||.||+ 
T Consensus       403 ~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala----~~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~  476 (603)
T 4feg_A          403 RHLKLTPSNRHITSNLFATMGVGIPGAIAAKLN----YPERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQ  476 (603)
T ss_dssp             HHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred             HhceeCCCCceecCcccccccchhHHHhhHHHh----CCCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCc
Confidence            345666676666667789999999999999998    468899999999998775  5669999999999999999887 


Q ss_pred             Cccee----------eccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe---eeeCC
Q psy14560         82 YGMGT----------SAERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT---YRYSG  146 (355)
Q Consensus        82 ~~~~~----------~~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t---~R~~G  146 (355)
                      |++..          ........+||.++  |+|+++++|++  ++++.+++++|++  .+.+||+|||+.|   +|...
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~  552 (603)
T 4feg_A          477 YGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNK--IEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPA  552 (603)
T ss_dssp             CHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECB--GGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCT
T ss_pred             hHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCc
Confidence            87632          11122345788887  57999999985  4456555555432  1678999999999   44557


Q ss_pred             CCCCCCCccee-------------cchhHHHHHHHHhhhhhhhh
Q psy14560        147 HSMSDPGTSFR-------------DPITSFKEKMLNSELATVDE  177 (355)
Q Consensus       147 Hs~~D~~~~YR-------------DpIr~fee~Li~~Gl~t~~e  177 (355)
                      |...|+...|+             ||+..|+++|.++|++++++
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~g~~~~~~  596 (603)
T 4feg_A          553 EKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLKQFGLDDLQH  596 (603)
T ss_dssp             TSCCCCTTTSCHHHHHHHHHHHTCTTCCCHHHHHHHTTC-----
T ss_pred             ccchhhhhhhhHHHHHHHHhhCCcccCCchHHHHHHcCCchhhh
Confidence            77766665553             88999999999999877654

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=99.83  E-value=1.1e-20  Score=198.06  Aligned_cols=131  Identities=20%  Similarity=0.166  Sum_probs=109.8

Q ss_pred             ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecccc--
Q psy14560         14 NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERS--   91 (355)
Q Consensus        14 ~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~--   91 (355)
                      +...++|+||+++|+|+|+|+|.|+++++++|||++|||++++|.++|+|++|+++++|+|+||+||+|+++++....  
T Consensus       117 ~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~  196 (629)
T 2o1x_A          117 HDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNK  196 (629)
T ss_dssp             TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHH
T ss_pred             CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHH
Confidence            456778999999999999999999999999999999999999999999999999999999999999999987654311  


Q ss_pred             -CC-----------------------C---------ccHh---------hh--cCCcceE-EEeCCCHHHHHHHHHHHHH
Q psy14560         92 -SA-----------------------S---------TDYY---------TR--GDYIPGI-WVDGMDVLAVREASKFAVN  126 (355)
Q Consensus        92 -~~-----------------------~---------~d~~---------~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~  126 (355)
                       ..                       .         +++.         ++  ++|++++ +|||+|++++.+++++|  
T Consensus       197 ~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A--  274 (629)
T 2o1x_A          197 FMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERL--  274 (629)
T ss_dssp             HC---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHH--
T ss_pred             HHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHH--
Confidence             00                       0         1322         43  5799999 99999999887777665  


Q ss_pred             HHHcCCCCeEEEEEeeeeCCCC
Q psy14560        127 YASSGKGPLVLEVVTYRYSGHS  148 (355)
Q Consensus       127 ~ar~~~gP~lIev~t~R~~GHs  148 (355)
                        ++.++|+||++.|++.+||+
T Consensus       275 --~~~~~P~lI~v~t~kg~G~~  294 (629)
T 2o1x_A          275 --VDLDGPTILHIVTTKGKGLS  294 (629)
T ss_dssp             --TTSSSEEEEEEECCTTTTCH
T ss_pred             --HhcCCCEEEEEEEecCCCCC
Confidence              45689999999999999886

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=99.83  E-value=2.2e-20  Score=197.26  Aligned_cols=135  Identities=24%  Similarity=0.265  Sum_probs=115.1

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCC----------CCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGT----------GGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~----------~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|+||+++|.|+|+|+|.++.+.          ++.|+|++|||++++|.++|+|++|++++|| +|+|++||
T Consensus       132 ~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN  211 (690)
T 3m49_A          132 TAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSN  211 (690)
T ss_dssp             STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             CCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECC
Confidence            345566889999999999999999986542          8899999999999999999999999999998 88899999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEEE-eCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEeeeeCCCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIWV-DGMDVLAVREASKFAVNYASS-GKGPLVLEVVTYRYSGHSMSD  151 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~V-dG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~R~~GHs~~D  151 (355)
                      +|+++.+.... ..+|+.++  |+||++++| ||+|++++.+|+++|    ++ .++|+||++.|.+.+|++..+
T Consensus       212 ~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a----~~~~~~P~lI~v~T~kG~G~~~~~  281 (690)
T 3m49_A          212 DISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEA----KADEKRPTLIEVRTTIGFGSPNKS  281 (690)
T ss_dssp             SBCSSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHH----HHCCSSCEEEEEECCTTTTCTTTT
T ss_pred             Ceecccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHH----HhcCCCCEEEEEEeecccccCccc
Confidence            99998776543 34788876  579999999 999999888776654    44 689999999999999997533

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=99.74  E-value=5.9e-18  Score=182.69  Aligned_cols=132  Identities=17%  Similarity=0.059  Sum_probs=114.3

Q ss_pred             cccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCCCccee
Q psy14560         15 FYGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNGYGMGT   86 (355)
Q Consensus        15 ~~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~~   86 (355)
                      +..++|+||.+++.|+|+|++.|+       .++++.|+|++|||++++|++||+|++|+.++|| +|+||+||+++++.
T Consensus       187 ~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~  266 (886)
T 2qtc_A          187 WQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDG  266 (886)
T ss_dssp             CCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred             ccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCC
Confidence            556789999999999999999998       7789999999999999999999999999999997 99999999999987


Q ss_pred             eccccC-CCccHhhh--cCCcceEEE------------------------------------------------------
Q psy14560         87 SAERSS-ASTDYYTR--GDYIPGIWV------------------------------------------------------  109 (355)
Q Consensus        87 ~~~~~~-~~~d~~~~--A~G~~~~~V------------------------------------------------------  109 (355)
                      +..... ...++.++  ++||++++|                                                      
T Consensus       267 ~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~  346 (886)
T 2qtc_A          267 PVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAA  346 (886)
T ss_dssp             BSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHT
T ss_pred             CccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHH
Confidence            765421 23455554  679999988                                                      


Q ss_pred             ---------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        110 ---------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       110 ---------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                                     ||||+.+|++|+++|.+.   .++|+||++.|.+.+||+.
T Consensus       347 l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~  398 (886)
T 2qtc_A          347 LVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGD  398 (886)
T ss_dssp             TTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTT
T ss_pred             HHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccch
Confidence                           699999999999887653   3589999999999999973

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=99.70  E-value=3.3e-17  Score=170.13  Aligned_cols=133  Identities=15%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...++.|+||+++|.|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       396 ~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~  469 (590)
T 1v5e_A          396 RHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTE  469 (590)
T ss_dssp             GTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSS
T ss_pred             HhcccCCCCeEEcCCCCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCc
Confidence            5666677765555567899999999999999984    68899999999998775  4779999999999888888775 


Q ss_pred             Ccceeecccc---------CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTSAERS---------SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~~~~~---------~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |++.......         ...+||.++  ++|+++++|+  +++++.+++++|++..+. ++|+|||+.|++.
T Consensus       470 ~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~  540 (590)
T 1v5e_A          470 YAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQD  540 (590)
T ss_dssp             CTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSC
T ss_pred             hHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence            8886532211         234788887  5799999997  578899999988876554 7899999999864

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=99.68  E-value=3.6e-17  Score=170.51  Aligned_cols=135  Identities=24%  Similarity=0.210  Sum_probs=107.9

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|.|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       425 ~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~  498 (616)
T 2pan_A          425 QMLHVFKDRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAY  498 (616)
T ss_dssp             HHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred             HhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCc
Confidence            3466677877777788899999999999999984    68999999999998775  4679999999999988888886 


Q ss_pred             Ccceeecc--------------c--cCC----CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560         82 YGMGTSAE--------------R--SSA----STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus        82 ~~~~~~~~--------------~--~~~----~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      |++.....              .  ...    .+||.++  ++|+++++|+  +++++.+++++|++++++.++|+|||+
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev  576 (616)
T 2pan_A          499 LGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEV  576 (616)
T ss_dssp             CHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             chHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEE
Confidence            87743210              0  011    2688876  5799999997  467888999998887766789999999


Q ss_pred             EeeeeC
Q psy14560        140 VTYRYS  145 (355)
Q Consensus       140 ~t~R~~  145 (355)
                      .|+|..
T Consensus       577 ~~~~~~  582 (616)
T 2pan_A          577 ILERVT  582 (616)
T ss_dssp             EBCSCC
T ss_pred             Eecccc
Confidence            998654

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=99.65  E-value=1.2e-16  Score=165.16  Aligned_cols=129  Identities=16%  Similarity=0.155  Sum_probs=101.1

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.+...++.|+||+++|.|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       403 ~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~  476 (566)
T 1ozh_A          403 RYLYTFRARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNG  476 (566)
T ss_dssp             HTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSB
T ss_pred             HhcccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCc
Confidence            3555666766666777899999999999999984    68999999999998774  4569999999999998888886 


Q ss_pred             Ccceeecc---------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAE---------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~---------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++.....         .....+||.++  ++|+++++|++  ++++.+++++|+    +.++|+|||+.|+|
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~liev~~~~  543 (566)
T 1ozh_A          477 YNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVES--AEALEPTLRAAM----DVDGPAVVAIPVDY  543 (566)
T ss_dssp             CHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCS--GGGHHHHHHHHH----HSSSCEEEEEEBCC
T ss_pred             hhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence            88754321         22334788886  57999999984  566666666654    46899999999975

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=99.65  E-value=9e-17  Score=158.18  Aligned_cols=74  Identities=53%  Similarity=0.925  Sum_probs=70.3

Q ss_pred             cccccceeecccceecccCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHhhhhhccccccceeccCccccccc
Q psy14560        277 SYASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFL  350 (355)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~~~~~~g~~h~~~g~~~~~~  350 (355)
                      +|+++++|++++||||+|+++|+....+|+|+++++||+|.++|+||+++.+||++|+|+||||+|.||||+.|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~v   77 (365)
T 2ozl_A            4 SFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV   77 (365)
T ss_dssp             CCCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHH
T ss_pred             ccccccccccCccccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999764

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=99.65  E-value=1.3e-16  Score=164.57  Aligned_cols=129  Identities=20%  Similarity=0.210  Sum_probs=101.5

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      ++.+..|.++...++.|+||+++|.|+|+++|.|  +++++|||++|||+++++  +++|++|+++++|+++||.||+ |
T Consensus       403 ~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~  478 (563)
T 2uz1_A          403 VMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSW  478 (563)
T ss_dssp             HHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBC
T ss_pred             hccccCCCeEECCCCCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcc
Confidence            4566667666666678999999999999999975  578999999999998775  4579999999999888888775 8


Q ss_pred             cceeecc-------cc----CCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         83 GMGTSAE-------RS----SASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        83 ~~~~~~~-------~~----~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ++.....       ..    ...+||.++  ++|+++++|+  +++++.+++++|+    +.++|+|||+.|+
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~  545 (563)
T 2uz1_A          479 GATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQAL----AHNRPACINVAVA  545 (563)
T ss_dssp             HHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HSSSCEEEEEECC
T ss_pred             hHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----HCCCCEEEEEEec
Confidence            8754321       11    134688886  5799999997  5777777776665    4689999999997

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=99.64  E-value=8.1e-17  Score=164.79  Aligned_cols=128  Identities=28%  Similarity=0.421  Sum_probs=98.7

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|..+....+ |+||+++|.|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       385 ~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~  457 (528)
T 1q6z_A          385 QRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGT  457 (528)
T ss_dssp             HHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSB
T ss_pred             HhccccCCCcEECCCC-ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCc
Confidence            3456666755555556 99999999999999984    67899999999998876  5789999999999999998886 


Q ss_pred             Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++.....          .....+||.++  ++|+++++|++  .+++.++    ++++++.++|+|||+.|.+
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~a----l~~a~~~~gp~liev~~~~  525 (528)
T 1q6z_A          458 YGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADN--LEQLKGS----LQEALSAKGPVLIEVSTVS  525 (528)
T ss_dssp             CHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESS--HHHHHHH----HHHHHTCSSCEEEEEEBCC
T ss_pred             chHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHH----HHHHHHCCCcEEEEEEecC
Confidence            88754321          11134688886  46999999985  5555555    4455567899999999875

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=99.64  E-value=2.2e-16  Score=166.76  Aligned_cols=131  Identities=25%  Similarity=0.262  Sum_probs=103.5

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|+|+|+++|    .+++.|||++|||+++++  +++|++|+++++|+++||.||+ 
T Consensus       496 ~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA----~p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~  569 (677)
T 1t9b_A          496 QHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVA----KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEE  569 (677)
T ss_dssp             HHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHH----CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSS
T ss_pred             HhcccCCCCeEEeCCCcchhhchHHHHHHHHHh----CCCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCC
Confidence            356677787877788889999999999999998    478999999999998764  3559999999999888888776 


Q ss_pred             Ccceeecc----------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560         82 YGMGTSAE----------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS  145 (355)
Q Consensus        82 ~~~~~~~~----------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~  145 (355)
                      |++.....          .....+||.++  ++|+++++|+  +.+++.+++++|+    +.++|+|||+.|++..
T Consensus       570 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~~  639 (677)
T 1t9b_A          570 QGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKKV  639 (677)
T ss_dssp             CHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSSC
T ss_pred             chhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHH----HCCCcEEEEEEecCCc
Confidence            88754211          11235788887  5799999996  5777777766655    4689999999998653

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=99.64  E-value=1.8e-16  Score=163.87  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+++...+++|+||+++|.|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       419 ~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~  492 (573)
T 2iht_A          419 LFARADQPFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDT  492 (573)
T ss_dssp             HHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSB
T ss_pred             HhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCc
Confidence            3456666766666667899999999999999984    68899999999998775  4679999999999888888776 


Q ss_pred             Ccceeec---------c--ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------E--RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~--~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         .  .....+||.++  ++|+++++|+  +.+++.+++++|    ++.++|+|||+.|.|
T Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~  561 (573)
T 2iht_A          493 NGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKG----AELGRPFLIEVPVNY  561 (573)
T ss_dssp             CHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHH----HTSSSCEEEEEEBCC
T ss_pred             chhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEECCC
Confidence            8875532         1  22334788886  5799999997  566766666555    457899999999986

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=99.64  E-value=1.1e-16  Score=164.99  Aligned_cols=134  Identities=16%  Similarity=0.054  Sum_probs=101.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+.+...+++|+||+++|.|+|+++|.+.++.+++|||++|||+++++  +++|++|+++++|+++||.||+ 
T Consensus       396 ~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~  473 (563)
T 2vk8_A          396 NQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDG  473 (563)
T ss_dssp             GGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSS
T ss_pred             hhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCc
Confidence            3455555655555678899999999999999998877778999999999998764  4669999999999888888776 


Q ss_pred             Ccceeecc------ccCCCccHhhh--cCCcc---eEEEeCCCHHHHHHHHH-HHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSAE------RSSASTDYYTR--GDYIP---GIWVDGMDVLAVREASK-FAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~~------~~~~~~d~~~~--A~G~~---~~~VdG~D~~~v~~a~~-~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++.....      .....+||.++  |+|++   +++|++  .+++.++++ ++++   ..++|+|||+.|++
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~--~~el~~al~~~a~~---~~~~p~liev~~~~  542 (563)
T 2vk8_A          474 YTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVAT--TGEWDKLTQDKSFN---DNSKIRMIEVMLPV  542 (563)
T ss_dssp             CHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEECB--HHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred             chhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEecC--HHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence            88754221      11234688876  57999   999984  667666655 4432   23479999999973

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=99.64  E-value=4.2e-16  Score=161.72  Aligned_cols=131  Identities=21%  Similarity=0.231  Sum_probs=102.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...+++|+||+++|+|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       409 ~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~  482 (590)
T 1ybh_A          409 QFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQH  482 (590)
T ss_dssp             HSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSB
T ss_pred             HhcccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCc
Confidence            4566777877777778899999999999999984    68899999999998765  4579999999999888888775 


Q ss_pred             Ccceeec----------cccC--------CCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA----------ERSS--------ASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~----------~~~~--------~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....          ....        ..+||.++  ++|+++++|+  +++++.+++++|+    +.++|+|||+.|
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~  556 (590)
T 1ybh_A          483 LGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML----DTPGPYLLDVIC  556 (590)
T ss_dssp             CHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH----HSSSCEEEEEEC
T ss_pred             chHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEe
Confidence            8775321          0111        14688876  5799999997  5777766666655    468999999999


Q ss_pred             eeeC
Q psy14560        142 YRYS  145 (355)
Q Consensus       142 ~R~~  145 (355)
                      ++..
T Consensus       557 ~~~~  560 (590)
T 1ybh_A          557 PHQE  560 (590)
T ss_dssp             CTTC
T ss_pred             cCCc
Confidence            8654

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=99.63  E-value=1.6e-16  Score=164.91  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=102.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|.++....+.|+||+++|.|+|+++|.    ++++|||++|||++.++  +++|++|+++++|+++||.||+ 
T Consensus       407 ~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~  480 (589)
T 2pgn_A          407 GGAILQRPRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNES  480 (589)
T ss_dssp             HHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred             HhcccCCCCcEECCCCcchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCC
Confidence            3556667766665667899999999999999984    68899999999998775  4789999999999888888887 


Q ss_pred             Ccceeecc---------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeC
Q psy14560         82 YGMGTSAE---------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYS  145 (355)
Q Consensus        82 ~~~~~~~~---------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~  145 (355)
                      |++.....         .....+||.++  ++|+++++|++  .+++.+++++|++    .++|+|||+.|++..
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~gp~liev~~~~~~  549 (589)
T 2pgn_A          481 YGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAID----SGKPALIEIPVSKTQ  549 (589)
T ss_dssp             CHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHH----HCSCEEEEEECCSSS
T ss_pred             cccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence            88754321         22335788887  46999999985  4466666666653    578999999998654

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=99.63  E-value=4.4e-16  Score=160.24  Aligned_cols=130  Identities=20%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+...++.|+||+++|.|+|+++|    .|+++||+++|||++.++  .++|++|+++++|+++||.||+ 
T Consensus       389 ~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala----~~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~  462 (549)
T 3eya_A          389 RYLKMNGKRRLLGSFNHGSMANAMPQALGAQAT----EPERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSV  462 (549)
T ss_dssp             HHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHH----STTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSB
T ss_pred             HhCccCCCCcEEeCCCCchhhhHHHHHHHHHHh----CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCc
Confidence            345666676655567889999999999999998    468999999999998664  4569999999999888888776 


Q ss_pred             Ccceeecc---------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTSAE---------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~~~---------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |++.....         .....+||.++  ++|+++++|+  +++++.+++++|    ++.++|+|||+.+.+.
T Consensus       463 ~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~~  530 (549)
T 3eya_A          463 LGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRA----FSIDGPVLVDVVVAKE  530 (549)
T ss_dssp             CCCC------------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHH----HHSSSCEEEEEEBCCC
T ss_pred             cHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEeccc
Confidence            87643211         11234688886  5799999997  455666666555    4568999999999764

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=99.63  E-value=4.6e-16  Score=160.69  Aligned_cols=129  Identities=15%  Similarity=0.046  Sum_probs=98.0

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      ++++..|+.+...+++|+||+++|.|+|+++|.    ++++|||++|||+++++  +++|++|+++++|+++||.||+ |
T Consensus       409 ~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~  482 (570)
T 2vbf_A          409 TIFLKSNSRFIGQPLWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGY  482 (570)
T ss_dssp             TSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSC
T ss_pred             hcccCCCCeEecCccchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCch
Confidence            344555655555678899999999999999984    68999999999998774  4569999999999888887775 8


Q ss_pred             cceeecc------ccCCCccHhhh--cCCcc-----eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         83 GMGTSAE------RSSASTDYYTR--GDYIP-----GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        83 ~~~~~~~------~~~~~~d~~~~--A~G~~-----~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ++.....      .....+||.++  ++|++     +++|+  +.+++.++++++   +++.++|+|||+.|++
T Consensus       483 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a---~~~~~~p~liev~~~~  551 (570)
T 2vbf_A          483 TVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEA---QADVNRMYWIELVLEK  551 (570)
T ss_dssp             HHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred             HHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence            8754321      11234688886  57998     88997  467776666653   3467899999999974

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=99.61  E-value=5.1e-16  Score=159.57  Aligned_cols=128  Identities=13%  Similarity=0.040  Sum_probs=97.7

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      ++++..|..+...++.|+||+++|.|+|+++|.    ++++|||++|||++.++  +++|.+|+++++|+++||.||+ |
T Consensus       392 ~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~  465 (552)
T 1ovm_A          392 DLRLPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGY  465 (552)
T ss_dssp             TCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSC
T ss_pred             hcccCCCCeEEechhhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCC
Confidence            455555655555677899999999999999984    68899999999998764  4669999999999888888776 8


Q ss_pred             cceeecc------ccCCCccHhhh--cCCc----ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         83 GMGTSAE------RSSASTDYYTR--GDYI----PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        83 ~~~~~~~------~~~~~~d~~~~--A~G~----~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ++.....      .....+||.++  ++|+    ++++|+  +.+++.+++++    +++.++|+|||+.|++
T Consensus       466 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~----a~~~~gp~liev~~~~  532 (552)
T 1ovm_A          466 TVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEK----VAHHERLSLIEVMLPK  532 (552)
T ss_dssp             HHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHH----HTTCSSEEEEEEECCT
T ss_pred             eEEEeeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHH----HHhCCCCEEEEEEcCc
Confidence            8753221      12234688887  4699    899997  46666555554    5567899999999974

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=99.60  E-value=6.9e-16  Score=159.27  Aligned_cols=128  Identities=20%  Similarity=0.169  Sum_probs=97.0

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      +++...|..+...++.|+||+++|.|+|+++|    .++++|||++|||+++++  +++|++|+++++|+++||.||+ |
T Consensus       393 ~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala----~~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~  466 (566)
T 2vbi_A          393 RMTLPRGARVELEMQWGHIGWSVPSAFGNAMG----SQDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGY  466 (566)
T ss_dssp             TCCCCTTCEEECCTTTCCTTTHHHHHHHHHHT----CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSC
T ss_pred             heECCCCCEEEecCcccchhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcc
Confidence            34444454444456789999999999999998    368999999999998764  4569999999999888887775 8


Q ss_pred             cceeeccc----cCCCccHhhh--cCCc-----ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEeee
Q psy14560         83 GMGTSAER----SSASTDYYTR--GDYI-----PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTYR  143 (355)
Q Consensus        83 ~~~~~~~~----~~~~~d~~~~--A~G~-----~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~R  143 (355)
                      ++......    ....+||.++  ++|+     ++++|+  +.+++.+++++|+    +. ++|+|||+.|++
T Consensus       467 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~----~~~~gp~liev~~~~  533 (566)
T 2vbi_A          467 VIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAK----ANTRGPTLIECQIDR  533 (566)
T ss_dssp             HHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred             eEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHH----hcCCCcEEEEEEeCc
Confidence            87654321    2234688876  4689     999997  5777777666654    44 899999999974

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=99.59  E-value=1.2e-15  Score=157.47  Aligned_cols=129  Identities=22%  Similarity=0.168  Sum_probs=97.4

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      +++...|..+...++.|+||+++|.|+|+++|.    ++++||+++|||++.+.  +++|++|+++++|+++||.||+ |
T Consensus       397 ~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~  470 (568)
T 2wvg_A          397 RMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGY  470 (568)
T ss_dssp             TCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSC
T ss_pred             hcccCCCCeEEeCCCcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcc
Confidence            344444545544567899999999999999984    68999999999998763  4569999999999888877765 8


Q ss_pred             cceeeccc----cCCCccHhhh--cCCc---------ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         83 GMGTSAER----SSASTDYYTR--GDYI---------PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        83 ~~~~~~~~----~~~~~d~~~~--A~G~---------~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ++......    ....+||.++  ++|+         ++++|+  +.+++.+++++|++.   .++|+|||+.|+|
T Consensus       471 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~  541 (568)
T 2wvg_A          471 TIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR  541 (568)
T ss_dssp             HHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred             eEeeeeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence            87654321    2234688886  4688         899997  567777777766532   2799999999974

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=99.57  E-value=5e-15  Score=152.85  Aligned_cols=128  Identities=16%  Similarity=0.119  Sum_probs=100.1

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      +++...|+.....+++|+||+++|.|+|++++     ++++||+++|||++.+.  .++|++|+++++|+++||.||+ |
T Consensus       410 ~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~  482 (568)
T 2c31_A          410 IVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGI  482 (568)
T ss_dssp             HCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBS
T ss_pred             HhcccCCCeEEcCCCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchh
Confidence            35566787777788889999999999999998     57899999999998663  3569999999999999999997 3


Q ss_pred             -cceeec---cc----cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         83 -GMGTSA---ER----SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        83 -~~~~~~---~~----~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                       .+....   ..    ....+||.++  ++|+++++|+  +++++.+++++|++    .++|+|||+.++|.
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~  548 (568)
T 2c31_A          483 YKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD  548 (568)
T ss_dssp             SCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred             HHHHHHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence             332111   00    0345688887  5799999997  57788777777663    57899999999854

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=99.57  E-value=4.2e-15  Score=153.21  Aligned_cols=127  Identities=18%  Similarity=0.166  Sum_probs=98.8

Q ss_pred             ccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C-
Q psy14560          5 MIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y-   82 (355)
Q Consensus         5 ~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~-   82 (355)
                      +....|+.....+++|+||+++|.|+|++++     ++++|||++|||++++.  .++|.+|+++++|+++||.||+ | 
T Consensus       406 ~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~  478 (564)
T 2q28_A          406 IDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIY  478 (564)
T ss_dssp             SCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSS
T ss_pred             hcccCCCeEecCCCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhH
Confidence            4566777776678889999999999999997     58899999999998664  3559999999999999999987 4 


Q ss_pred             cceeec---cc------cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         83 GMGTSA---ER------SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        83 ~~~~~~---~~------~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      ++....   ..      ....+||.++  ++|+++++|+  +++++.+++++|++    .++|+|||+.+.+.
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~  545 (564)
T 2q28_A          479 RGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPA  545 (564)
T ss_dssp             CSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred             HHHHHHHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence            442211   00      1124688887  4699999997  57788777777663    57899999999854

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=99.56  E-value=3.5e-15  Score=154.13  Aligned_cols=123  Identities=20%  Similarity=0.178  Sum_probs=95.6

Q ss_pred             CCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceee
Q psy14560          9 NPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTS   87 (355)
Q Consensus         9 ~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~   87 (355)
                      .|+.+...+++|+||+++|.|+|+++|.    ++++|||++|||++.+  .+++|++|+++++|+++||.||+ |++...
T Consensus       411 ~~~~~~~~~~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~  484 (565)
T 2nxw_A          411 IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRT  484 (565)
T ss_dssp             CCSCEECCTTTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             CCcEEEccCccccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence            5555555667899999999999999994    6889999999999874  35669999999999888888776 887533


Q ss_pred             cc-----ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCe-EEEEEeee
Q psy14560         88 AE-----RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPL-VLEVVTYR  143 (355)
Q Consensus        88 ~~-----~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~-lIev~t~R  143 (355)
                      ..     .....+||.++  ++|+++++|+  +.+++.+++++|+    +.++|+ |||+.|++
T Consensus       485 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~~liev~~~~  542 (565)
T 2nxw_A          485 FQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAF----ATRGRFQLIEAMIPR  542 (565)
T ss_dssp             HCTTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred             ecccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHH----hcCCCeEEEEEEccc
Confidence            21     12245788887  4799999998  4677776666655    457898 99999974

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=99.50  E-value=4.4e-15  Score=154.49  Aligned_cols=121  Identities=17%  Similarity=0.051  Sum_probs=90.7

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA   88 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~   88 (355)
                      |.++....+.+.||+++|.|+|+++|.     +++|||++|||++.++ + ++|++|+++++|+++||.||+ |++....
T Consensus       445 ~~~~~~~~G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~~~  517 (604)
T 2x7j_A          445 PFRIYSNRGANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFSFL  517 (604)
T ss_dssp             CCEEECCTTTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGGGS
T ss_pred             CceEEeCCCcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccccC
Confidence            544444556688999999999999983     6889999999998775 3 459999999999888888775 8874321


Q ss_pred             c------------ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         89 E------------RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        89 ~------------~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      .            .....+||.++  ++|+++++|+  +++++.+++++    +++.++|+|||+.+++
T Consensus       518 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~----a~~~~gp~liev~~~~  580 (604)
T 2x7j_A          518 PQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAP----QADKPGLHLIEIKTDR  580 (604)
T ss_dssp             GGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCC----CCSSCCEEEEEEECCH
T ss_pred             CCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHH----HHhCCCCEEEEEECCc
Confidence            1            01134688886  5799999997  46666555544    4457899999999864

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=99.48  E-value=1.9e-14  Score=148.34  Aligned_cols=113  Identities=18%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             cCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec-------
Q psy14560         17 GGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA-------   88 (355)
Q Consensus        17 ~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~-------   88 (355)
                      +++|++|+ +|.|+|+++|     ++++|||++|||++.+.  ..+|++|+++++|+++||.||+ |++....       
T Consensus       414 g~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~  485 (556)
T 3hww_A          414 GASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER  485 (556)
T ss_dssp             SSCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred             cccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence            45677788 9999999998     37899999999997654  2349999999999999999998 5653221       


Q ss_pred             c---ccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         89 E---RSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        89 ~---~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      .   .....+||.++  ++|+++++|++  .+++.++    ++++++.++|+|||+.+++
T Consensus       486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~a----l~~a~~~~gp~liev~~~~  539 (556)
T 3hww_A          486 ERFYLMPQNVHFEHAAAMFELKYHRPQN--WQELETA----FADAWRTPTTTVIEMVVND  539 (556)
T ss_dssp             ---CCCCCCCCSHHHHHHTTCEEECCSS--HHHHHHH----HHHHTTSSSEEEEEEECCS
T ss_pred             HHhccCCCCCCHHHHHHHcCCcEEecCC--HHHHHHH----HHHHHhCCCCEEEEEECCc
Confidence            1   11235788887  57999999974  5565554    4555667899999999864

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=99.39  E-value=1.3e-13  Score=142.66  Aligned_cols=109  Identities=23%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             cccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec---c--c-----
Q psy14560         22 VGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA---E--R-----   90 (355)
Q Consensus        22 lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~---~--~-----   90 (355)
                      +|+++|.|+|+++      ++++|||++|||++.+.  .++|++|+++++|+++||.||+ |++....   .  .     
T Consensus       438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~  509 (578)
T 3lq1_A          438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL  509 (578)
T ss_dssp             SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred             cccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence            3447999999863      48899999999998654  3459999999999999999886 7775421   0  0     


Q ss_pred             --cCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         91 --SSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        91 --~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                        ....+||.++  |+|+++++|+  +.+++.+++++    +++.++|+|||+.+.+.
T Consensus       510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~----a~~~~gp~liev~~~~~  561 (578)
T 3lq1_A          510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDK----ASYHKGLDIIEVKTNRH  561 (578)
T ss_dssp             -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHH----HTTSSSEEEEEEC----
T ss_pred             ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHH----HHhCCCCEEEEEECCcc
Confidence              0124688886  5799999997  56666555554    55678999999998753

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=99.27  E-value=1.6e-12  Score=129.57  Aligned_cols=108  Identities=16%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             cee--cchhHHHHHHHH---hhh---hhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---SEL---ATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~Gl---~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      .||  -.+|.|++++.+   +|.   +....+||+.+++...++++.||++++||+|+..+++|.++.++|++++|+..|
T Consensus        79 ~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~~i~~el~g~~~~  158 (407)
T 1qs0_A           79 GMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERD  158 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHHHHHHHHhCCCCC
Confidence            466  456899998765   332   346788999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                      .++            |+|+++|+..  .+|++.++++|.++|+|+.-.+|
T Consensus       159 ~~~------------G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A  196 (407)
T 1qs0_A          159 PLK------------GRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMA  196 (407)
T ss_dssp             TTT------------TCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHH
T ss_pred             CCC------------CCCceeecchhccCccccccccccchhHHHHHHHH
Confidence            765            9999999875  69999999999999999887555

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=99.27  E-value=5.8e-12  Score=134.62  Aligned_cols=132  Identities=14%  Similarity=0.155  Sum_probs=109.0

Q ss_pred             CCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccH---HHHHHHHHHHcCCC-EEEEEEeCCCcce
Q psy14560         10 PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQ---NFEAYNIAKLWGIP-CIYVCENNGYGMG   85 (355)
Q Consensus        10 p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~---~~EaL~~Aa~~~LP-vi~Vv~NN~~~~~   85 (355)
                      |...++....|+||++++.|+|+|+.    +++..|+|++|||...+|.   .||+..++..+++. ++.|+.+|++.++
T Consensus       165 ~~tpGve~~tG~LGqGls~AvG~A~~----~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~  240 (845)
T 3ahc_A          165 PETPGSIHEGGELGYALSHAYGAVMN----NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIA  240 (845)
T ss_dssp             TTSTTCSCCCSSTTCHHHHHHHHHTT----CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSS
T ss_pred             CCCCCeecCCCCccchHhHHhhhhhc----CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCC
Confidence            45567788899999999999999954    6889999999999999999   99988888888998 8888889999998


Q ss_pred             eecccc-CCCccHhhh--cCCcceE-EEeC-C--CHHHHHHHHHHHHHH-----------HHc--CCCC--eEEEEEeee
Q psy14560         86 TSAERS-SASTDYYTR--GDYIPGI-WVDG-M--DVLAVREASKFAVNY-----------ASS--GKGP--LVLEVVTYR  143 (355)
Q Consensus        86 ~~~~~~-~~~~d~~~~--A~G~~~~-~VdG-~--D~~~v~~a~~~Al~~-----------ar~--~~gP--~lIev~t~R  143 (355)
                      .++... .+..++.++  |+||..+ .||| +  |++++.+++.+|++.           +++  .++|  .+|.++|..
T Consensus       241 g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~k  320 (845)
T 3ahc_A          241 NPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPK  320 (845)
T ss_dssp             SBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCT
T ss_pred             CCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcc
Confidence            766532 234566664  8999998 9999 8  999999888766633           444  3689  999999987


Q ss_pred             eC
Q psy14560        144 YS  145 (355)
Q Consensus       144 ~~  145 (355)
                      .+
T Consensus       321 G~  322 (845)
T 3ahc_A          321 GW  322 (845)
T ss_dssp             TT
T ss_pred             cC
Confidence            76

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=99.21  E-value=6.2e-12  Score=125.11  Aligned_cols=109  Identities=12%  Similarity=0.146  Sum_probs=94.8

Q ss_pred             cee--cchhHHHHHHHH---hhh---hhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---SEL---ATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~Gl---~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      .||  -.+|.|++++.+   +|.   +....+||+.+++...++++.||++++||+|++.+++|.++.++|++++|+.+|
T Consensus        60 ~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g  139 (400)
T 2bfd_A           60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD  139 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCC
Confidence            466  456889998765   332   356789999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhcc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      +++            |+++++|+..  .++++.++++|.++|+|+.-.+|.
T Consensus       140 ~~~------------G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~  178 (400)
T 2bfd_A          140 LGK------------GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAA  178 (400)
T ss_dssp             TTT------------TCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHH
T ss_pred             CCC------------CCCCCcCCcccccCccccCccccccccHHHHHHHhh
Confidence            876            9999999875  689999999999999999875554

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=98.92  E-value=2.4e-09  Score=119.41  Aligned_cols=97  Identities=12%  Similarity=-0.001  Sum_probs=71.9

Q ss_pred             CCeEEEEeCcc-cccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeeccc----------------cCCCccHhhh--c
Q psy14560         42 GGVCFALYGDG-ASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAER----------------SSASTDYYTR--G  101 (355)
Q Consensus        42 ~~~vv~~~GDG-a~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~----------------~~~~~d~~~~--A  101 (355)
                      ++.||++.||| ++.+|.  ..|.+|+++++||++||.||+ |++...+..                ....+||.++  |
T Consensus       953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A          953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp             CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred             CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence            48899999999 666653  249999999999999999998 666431110                0123688886  5


Q ss_pred             CCcceEEE-eC-CCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560        102 DYIPGIWV-DG-MDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus       102 ~G~~~~~V-dG-~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      +|++++++ .- .++.++.+++++|++    .+||+||++.+.-.
T Consensus      1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A         1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp             TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc
Confidence            79999854 33 488888888887764    58999999987543

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=98.87  E-value=9.7e-10  Score=108.15  Aligned_cols=102  Identities=15%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             cee--cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      .||  -.+|.|++++.+   +|   .+....+||+.+++...+++++||++++||+|++.+++|.++..+|++++|+.+|
T Consensus        49 ~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~~~~~~el~G~~~G  128 (368)
T 1w85_A           49 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHG  128 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCHHHHHHHHCCCCCC
Confidence            355  345888887644   33   4556889999999999999999999999999999999999999999999997653


Q ss_pred             CCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhcc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                                        |+|| ...+++++++++|.++|.|+.-.+|.
T Consensus       129 ------------------~~~h-~~~~~~~~~g~lG~~lp~AvG~A~A~  158 (368)
T 1w85_A          129 ------------------NQIP-EGVNVLPPQIIIGAQYIQAAGVALGL  158 (368)
T ss_dssp             ------------------GCCC-TTCCBCCCCCSTTHHHHHHHHHHHHH
T ss_pred             ------------------CCCC-cccccCCCccccCccccHHHHHHHHh
Confidence                              4577 46799999999999999999875554

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=98.81  E-value=3.6e-09  Score=103.96  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=90.2

Q ss_pred             cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccc-cccccccccccceeecCCCHHHHHHHHhcccccCCCC
Q psy14560        158 DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQ-DSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKG  230 (355)
Q Consensus       158 DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~-D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g~~~~  230 (355)
                      ..+|.|+.++..   +|   .+....++|+...+...+++++ |+++++||+|++.+.+|.++.++|.+++|+.+|+++ 
T Consensus        46 ~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~-  124 (367)
T 1umd_A           46 LAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNK-  124 (367)
T ss_dssp             HHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTT-
T ss_pred             HHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCC-
Confidence            456888887765   22   2344578999999999999998 999999999999999999999999999999999876 


Q ss_pred             CCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560        231 KGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       231 ~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                                 |+++++|+.+  .++++.++++|+++|.|+.-.++
T Consensus       125 -----------G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a  159 (367)
T 1umd_A          125 -----------GRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS  159 (367)
T ss_dssp             -----------TCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHH
T ss_pred             -----------CCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHH
Confidence                       9999999874  68999999999999999876444

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=98.35  E-value=9.8e-08  Score=103.08  Aligned_cols=110  Identities=15%  Similarity=0.042  Sum_probs=77.7

Q ss_pred             cee--cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHhhc------ccccccc-ccccccceee--cCCCHHHHHHHH
Q psy14560        155 SFR--DPITSFKEKMLNS---ELATVDELKEACAVGMRAVMR------EQDSIIS-AYRVHGWTYL--MGVSVFGVLSEL  220 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~al~------~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~  220 (355)
                      .|+  -.+|.||++|.+.   +-.-..++||+.+.+...+++      .+|++++ +||+|+..++  +|+++.++|+|+
T Consensus       123 ~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~  202 (868)
T 2yic_A          123 ILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEF  202 (868)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHh
Confidence            455  4568999987762   222334789999999887765      6899998 8999999999  999999999999


Q ss_pred             hcccccC-CCCCCCCCcccccCCCCccccCCc--------------ccccccccccCCchhhhhhhhhcc
Q psy14560        221 TGRRTGC-AKGKGPISWECCAKGKGGSMHMYA--------------KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       221 ~g~~~g~-~~~~~~~~w~~~~~G~gg~~h~~~--------------~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      +|+.+|+ ++           +|++.++|+..              .++.+.++++|+|+|+|+....|.
T Consensus       203 ~G~~~g~~~~-----------g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~  261 (868)
T 2yic_A          203 EGNLNPSQAH-----------GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAK  261 (868)
T ss_dssp             C-----------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHH
T ss_pred             cCCCCCCccC-----------CCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHH
Confidence            9998886 44           25566888764              134556789999999998875554

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=98.34  E-value=1.9e-07  Score=101.50  Aligned_cols=110  Identities=9%  Similarity=0.010  Sum_probs=82.1

Q ss_pred             cee--cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHhhc------ccccccc-ccccccceee--cCCCHHHHHHHH
Q psy14560        155 SFR--DPITSFKEKMLNS---ELATVDELKEACAVGMRAVMR------EQDSIIS-AYRVHGWTYL--MGVSVFGVLSEL  220 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~al~------~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~  220 (355)
                      .|+  -.+|.||++|.+.   |-.-..+++|+...+...+++      .+||+++ +||+|+..++  +|.++..+|+|+
T Consensus       203 ~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~  282 (933)
T 2jgd_A          203 FLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEF  282 (933)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHh
Confidence            355  4568999988762   211234688998888777665      5899996 8999999999  999999999999


Q ss_pred             hcccccCCCCCCCCCcccccCCCCccccCCcc------------cccccccccCCchhhhhhhhhccc
Q psy14560        221 TGRRTGCAKGKGPISWECCAKGKGGSMHMYAK------------NFYGGNGIVGAQTLKSLLKSISGR  276 (355)
Q Consensus       221 ~g~~~g~~~~~~~~~w~~~~~G~gg~~h~~~~------------~~~~~~~~vg~~~~~a~~~~~~~~  276 (355)
                      +|+.+|+++            |++.++|+...            ++.+.++++|+++|+|+....|.+
T Consensus       283 ~G~~~g~~g------------~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~  338 (933)
T 2jgd_A          283 AGKHKEHLG------------TGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARL  338 (933)
T ss_dssp             HTCC--CCS------------CCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCC------------CCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHH
Confidence            999887653            55666776531            345778999999999998866643

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=98.25  E-value=2.1e-07  Score=102.89  Aligned_cols=107  Identities=15%  Similarity=0.043  Sum_probs=74.7

Q ss_pred             cchhHHHHHHHHh---hhhhhhhHHHHHHhhHHHhhc------ccccccc-ccccccceee--cCCCHHHHHHHHhcccc
Q psy14560        158 DPITSFKEKMLNS---ELATVDELKEACAVGMRAVMR------EQDSIIS-AYRVHGWTYL--MGVSVFGVLSELTGRRT  225 (355)
Q Consensus       158 DpIr~fee~Li~~---Gl~t~~e~qEa~qvg~~~al~------~~D~v~~-~yR~~~~~~~--~g~~~~~~~~~~~g~~~  225 (355)
                      -.+|.||++|.+.   +-.-.-++||+.+.+...+++      .+|++++ +||+|+..++  +|+++.++|+|++|+.+
T Consensus       373 ~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~  452 (1113)
T 2xt6_A          373 NAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLN  452 (1113)
T ss_dssp             HHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-----
T ss_pred             HHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCC
Confidence            4458898887662   112234789999999887765      6899998 8999999999  99999999999999998


Q ss_pred             cC-CCCCCCCCcccccCCCCccccCCc--------------ccccccccccCCchhhhhhhhhcc
Q psy14560        226 GC-AKGKGPISWECCAKGKGGSMHMYA--------------KNFYGGNGIVGAQTLKSLLKSISG  275 (355)
Q Consensus       226 g~-~~~~~~~~w~~~~~G~gg~~h~~~--------------~~~~~~~~~vg~~~~~a~~~~~~~  275 (355)
                      |+ ++           +|++.++|+..              .++.+.++++|+|+|+|+....|.
T Consensus       453 g~~~~-----------g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~  506 (1113)
T 2xt6_A          453 PSQAH-----------GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAK  506 (1113)
T ss_dssp             -------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHH
T ss_pred             CCccC-----------CCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHH
Confidence            87 44           25566888764              134556789999999999875554

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=91.67  E-value=1.6  Score=44.60  Aligned_cols=104  Identities=16%  Similarity=0.083  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec-cccCCCccHhhhcCCc--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA-ERSSASTDYYTRGDYI--  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~-~~~~~~~d~~~~A~G~--  104 (355)
                      +|.|.|.+.   +.-..+++..|=|+++.   .-++..|-.-++|+|+|.-+-........ ..+  ..|... ...+  
T Consensus        58 ~A~GyAr~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~tk  128 (589)
T 2pgn_A           58 MVNGYNYVK---DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIAR  128 (589)
T ss_dssp             HHHHHHHHH---TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTSS
T ss_pred             HHHHHHHHH---CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccEE
Confidence            466666553   33456777778888664   33577788899999999987653221111 111  123333 2222  


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ...++  .+++++.+.+++|+..+..++ ||+.|++..+
T Consensus       129 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  165 (589)
T 2pgn_A          129 STQRV--ERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD  165 (589)
T ss_dssp             EEEEC--CSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred             EEeec--CCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence            23445  467788899999999888776 9999999764

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=90.61  E-value=0.92  Score=46.39  Aligned_cols=105  Identities=25%  Similarity=0.279  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|.|.|.+.   +.-..+++..|=|+++.   .-++..|-..++|+|+|.-+-.........  ....|.......  -.
T Consensus        65 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~g~~~--~Q~~d~~~~~~~~~k~  136 (590)
T 1ybh_A           65 AAEGYARSS---GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEVTRSITKH  136 (590)
T ss_dssp             HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCHHHHHGGGSSE
T ss_pred             HHHHHHHHH---CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCccccCCCc--ccccCHHHHHHHHhCe
Confidence            456666553   22334455556666543   345777888999999998875432211111  111233333211  12


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..++  .+++++.+++++|++.++.++ ||+.|++..+
T Consensus       137 ~~~v--~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d  172 (590)
T 1ybh_A          137 NYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD  172 (590)
T ss_dssp             EEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             EEec--CCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence            3444  467789999999999888764 8999999764

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=90.48  E-value=1.1  Score=45.41  Aligned_cols=106  Identities=18%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--Ccc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G~~  105 (355)
                      +|.|.|.+.   +.-..+++..|=|+.+.   .-++..|-..++|+|+|.-+-..........+.. .|......  --.
T Consensus        56 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~-~d~~~~~~~~tk~  128 (563)
T 2uz1_A           56 AAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAG-IDQVAMAAPITKW  128 (563)
T ss_dssp             HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCC-CCHHHHHGGGCSE
T ss_pred             HHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhh-ccHHHHhhhhhce
Confidence            455665542   22233444445565543   3356778888999999988765322111111110 23433322  222


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..++.  +++++.+.+++|+..+..++ ||+.|++..+
T Consensus       129 ~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d  164 (563)
T 2uz1_A          129 AHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD  164 (563)
T ss_dssp             EEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             EEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence            44553  67788899999999988865 9999999765

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=90.46  E-value=0.96  Score=46.06  Aligned_cols=105  Identities=16%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee-ccccCCCccHhhhcCCc--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS-AERSSASTDYYTRGDYI--  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~-~~~~~~~~d~~~~A~G~--  104 (355)
                      +|.|.|.+.   +.-..+++..|=|+.+.   .-++..|..-++|+|+|.-+-....... ...+  ..|.......+  
T Consensus        63 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~~~k  134 (573)
T 2iht_A           63 AADVLARIT---GRPQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMSK  134 (573)
T ss_dssp             HHHHHHHHH---CSCEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGSS
T ss_pred             HHHHHHHHH---CCCEEEEEccCchHHHH---HHHHHHHHhhCCCEEEEcccCcccccCCcCccc--cCCHHHHHHhHhh
Confidence            466666553   22233444445555442   3457778888999999998765332111 1111  12443332222  


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ...++.  +++++.+.+++|++.+..++ ||+.|++..+
T Consensus       135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  171 (573)
T 2iht_A          135 YAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD  171 (573)
T ss_dssp             EEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred             EEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence            234553  67788899999999888875 9999999865

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=90.27  E-value=1.5  Score=44.31  Aligned_cols=105  Identities=13%  Similarity=-0.012  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--P  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--~  105 (355)
                      +|.|.|.+.   +.-..+++..|=|+++.   .-++..|-.-++|+|+|.-+-........  ..-..|.......+  .
T Consensus        56 ~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~~--~~Q~~d~~~~~~~~tk~  127 (549)
T 3eya_A           56 AAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG--YFQETHPQELFRECSHY  127 (549)
T ss_dssp             HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTSC--CTTCCCHHHHTSTTCSE
T ss_pred             HHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCCC--CCCccCHHHHHhhhhhe
Confidence            455555542   22334445556666654   24577888899999999876442111000  01112443332222  2


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ..++.  +++++.+.+++|++.+...+||+.|++..+
T Consensus       128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d  162 (549)
T 3eya_A          128 CELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPGD  162 (549)
T ss_dssp             EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred             EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence            34453  577788899999988888889999998753

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=90.23  E-value=1.1  Score=45.61  Aligned_cols=105  Identities=19%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--Ccc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--YIP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G~~  105 (355)
                      +|.|.|.+.   +.-..+++..|=|+++.   .-++..|-.-++|+|+|.-+-..........+  ..|......  --.
T Consensus        63 ~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk~  134 (566)
T 1ozh_A           63 MAAAVGRIT---GKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTKY  134 (566)
T ss_dssp             HHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSE
T ss_pred             HHHHHHHHH---CCCEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhhe
Confidence            466666552   22233444446666553   34567777889999999887653221111111  123333322  223


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ..++.  +++++.+.+++|+..+..++ ||+.|++...
T Consensus       135 ~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d  170 (566)
T 1ozh_A          135 AIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD  170 (566)
T ss_dssp             EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             EEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence            44554  67788899999999888874 9999999764

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=89.49  E-value=0.38  Score=47.06  Aligned_cols=108  Identities=18%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cc--eeeccccCC-CccHhh
Q psy14560         24 AQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GM--GTSAERSSA-STDYYT   99 (355)
Q Consensus        24 ~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~--~~~~~~~~~-~~d~~~   99 (355)
                      ..+.+|+|++++     ..++++...|.|-...   .+.|..++..++|+++++.+-.. +.  ++....... ...+..
T Consensus        75 ~a~~~a~Gaa~a-----G~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~  146 (395)
T 1yd7_A           75 ASIAAAIGASWA-----GAKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGT  146 (395)
T ss_dssp             HHHHHHHHHHHT-----TCCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------------
T ss_pred             HHHHHHHHHHHh-----CCcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhcc
Confidence            345556666665     3567778888887432   23455677889999988876542 21  221111000 001111


Q ss_pred             hc-CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560        100 RG-DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus       100 ~A-~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      .+ .|++.+..  .++.+..+.+..|++.+.+.+.|+++....
T Consensus       147 ~g~~g~~vl~p--~~~qea~~l~~~A~~lA~~~~~PVi~~~~~  187 (395)
T 1yd7_A          147 HGDHSLIVLSP--STVQEAFDFTIRAFNLSEKYRTPVILLTDA  187 (395)
T ss_dssp             --CCCCEEECC--CSHHHHHHHHHHHHHHHHHHTSEEEEEECH
T ss_pred             CCCcceEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEcch
Confidence            11 25665554  478899999999998888778999998765

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=89.12  E-value=1.8  Score=45.31  Aligned_cols=104  Identities=22%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|.|.|.+.   +.-.++++..|=|+++.   .-++..|-.-++|+|+|.-+-..........+  ..|.......  -.
T Consensus       135 aAdGyAr~t---Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q--~~Dq~~i~~~~tk~  206 (677)
T 1t9b_A          135 MAEGYARAS---GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQ--EADVVGISRSCTKW  206 (677)
T ss_dssp             HHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTT--CCCHHHHTGGGSSE
T ss_pred             HHHHHHHHH---CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCCCcc--ccCHHHHhhhheeE
Confidence            466666553   22334555556666543   33567777889999999887542221110011  1233332211  12


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEe
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVT  141 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t  141 (355)
                      ..+|+  +++++.+.+++|++.+..+ .||+.|++..
T Consensus       207 ~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP~  241 (677)
T 1t9b_A          207 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK  241 (677)
T ss_dssp             EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             EEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence            34553  6778999999999988876 6899999984

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=88.55  E-value=2  Score=44.98  Aligned_cols=102  Identities=19%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP  105 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~  105 (355)
                      +++|.|+|+.    +.-++++.++.+-+.   ...+.+..++..++||+++....+++.........+..|++-+. .+|
T Consensus       416 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr-~iP  487 (663)
T 3kom_A          416 AAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLR-LIP  487 (663)
T ss_dssp             HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TST
T ss_pred             HHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHh-cCC
Confidence            3456666654    456778887766552   23456777899999999999888766432222223334444332 344


Q ss_pred             eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560        106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus       106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      .++| .=.|+.++..+++.|++   ..++|++|-
T Consensus       488 nl~V~~Pad~~e~~~~l~~A~~---~~~~Pv~ir  518 (663)
T 3kom_A          488 NLSVWRPADTIETMIAWKEAVK---SKDTPSVMV  518 (663)
T ss_dssp             TCEEECCCSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred             CcEEEeeCCHHHHHHHHHHHHH---hCCCCEEEE
Confidence            4433 22467777777776663   257899984

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=88.33  E-value=1.5  Score=45.01  Aligned_cols=104  Identities=15%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc-ceeeccccCCCccHhhhcCC--c
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG-MGTSAERSSASTDYYTRGDY--I  104 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~A~G--~  104 (355)
                      +|.|.|.+.   +.-.++++..|=|+++.   .-++..|-.-++|+|+|.-+-... +..... +  ..|.......  .
T Consensus        65 aA~GyAr~t---g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~-Q--~~d~~~~~~~~tk  135 (603)
T 4feg_A           65 AAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTF-Q--EMNENPIYADVAD  135 (603)
T ss_dssp             HHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCT-T--CCCCGGGGTTTCS
T ss_pred             HHHHHHHHh---CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCcc-c--cccHHHHhhhhce
Confidence            455555542   22234444556666654   235778888999999998764321 111100 1  1122222111  2


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      ...+|.  +++++.+.+++|++.+...+||+.|++..+
T Consensus       136 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d  171 (603)
T 4feg_A          136 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPVD  171 (603)
T ss_dssp             EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred             EEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence            234553  455677788888887777789999998753

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=87.53  E-value=1.7  Score=44.11  Aligned_cols=106  Identities=16%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee---ccccC--CC-ccHhhhc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS---AERSS--AS-TDYYTRG  101 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~---~~~~~--~~-~d~~~~A  101 (355)
                      +|.|.|.+.   + -..+++..|=|+++   ..-++..|-..++|+|+|.-+-.......   .....  .. .|.....
T Consensus        56 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~  128 (568)
T 2wvg_A           56 SAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA  128 (568)
T ss_dssp             HHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHH
T ss_pred             HHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHH
Confidence            466666553   3 23344444555544   34457778889999999998765322100   00000  01 1333332


Q ss_pred             C--CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        102 D--YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       102 ~--G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .  --...++.  +++++.+.+++|++.+..++||+.|++..+
T Consensus       129 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d  169 (568)
T 2wvg_A          129 KNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN  169 (568)
T ss_dssp             TTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred             HhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            2  22355664  566778888888888887789999999865

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=87.50  E-value=1.8  Score=43.92  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeecc---ccCCCcc-Hhhhc--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAE---RSSASTD-YYTRG--  101 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~---~~~~~~d-~~~~A--  101 (355)
                      +|.|.|.+.   +.-..+++..|=|+.+.   .-++..|..-++|+|+|.-+-.........   .+....| .....  
T Consensus        74 ~A~GyAr~t---gkp~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~  147 (565)
T 2nxw_A           74 AADAAARYS---STLGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE  147 (565)
T ss_dssp             HHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred             HHHHHHHHh---CCCeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence            456666553   22233444446665543   345777888999999999875422211100   0000112 22221  


Q ss_pred             CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        102 DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       102 ~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .--...++.  +++++.+.+++|++.+...+||+.|++..+
T Consensus       148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D  186 (565)
T 2nxw_A          148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPRN  186 (565)
T ss_dssp             SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred             hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence            122345554  455667778888877776689999999854

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=86.74  E-value=2.6  Score=43.90  Aligned_cols=101  Identities=17%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG  106 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~  106 (355)
                      .+|.|+|+.    +.-++++.++.+-+.   ..++.+..++..++||+++....+.+.+.......+..|++-+. .+|+
T Consensus       396 ~~a~GlA~~----gG~~P~~~~f~~F~~---~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr-~iP~  467 (632)
T 3l84_A          396 AINNAFARY----GIFLPFSATFFIFSE---YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFR-AMPN  467 (632)
T ss_dssp             HHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHH-HSSS
T ss_pred             HHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHh-cCCC
Confidence            446666654    345777777765442   23456777889999999999888866432222223334444321 2344


Q ss_pred             EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      ++| .=.|+.++..+++.|++    .++|++|-.
T Consensus       468 l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~  497 (632)
T 3l84_A          468 FLTFRPADGVENVKAWQIALN----ADIPSAFVL  497 (632)
T ss_dssp             CEEECCSSHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred             CEEEecCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence            333 22467777777777764    678998843

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=86.57  E-value=1.6  Score=44.31  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|.|.|.+.   +.-..+++..|=|+.+   ..-++..|-.-++|+|+|.-+-...........+...|.......  -.
T Consensus        62 ~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~  135 (568)
T 2c31_A           62 AASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA  135 (568)
T ss_dssp             HHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE
T ss_pred             HHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe
Confidence            355555542   2222344444555443   344577888899999999987552211100000111233332211  22


Q ss_pred             eEEEeCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEee
Q psy14560        106 GIWVDGMDVLAVREASKFAVNYASS-GKGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~  142 (355)
                      ..++.  +++++.+.+++|++.+.. ..||+.|++..+
T Consensus       136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  171 (568)
T 2c31_A          136 SFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPAK  171 (568)
T ss_dssp             EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred             eeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence            34553  567788899999998887 469999998754

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=86.40  E-value=3  Score=43.62  Aligned_cols=101  Identities=22%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcC-CCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560         28 LGTGIAFAAQYKG-TGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG  106 (355)
Q Consensus        28 ~AiGaA~A~k~~~-~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~  106 (355)
                      +|.|+|+    .+ .-++++.++.+.+.   -.++++..++..++|+++++...+++.........+..|++-.. .+|.
T Consensus       429 ~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr-~iP~  500 (675)
T 1itz_A          429 ICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFR-AMPN  500 (675)
T ss_dssp             HHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-SSSS
T ss_pred             HHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhc-cCCC
Confidence            4555554    34 35777777766553   24566888999999999999877766432222222334444332 3444


Q ss_pred             EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      ++| .=.|+.++..+++.|++.   .++|++|-.
T Consensus       501 l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~  531 (675)
T 1itz_A          501 ILMLRPADGNETAGAYKVAVLN---RKRPSILAL  531 (675)
T ss_dssp             CEEECCCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence            433 235788887777777642   378999843

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=86.36  E-value=2.1  Score=42.98  Aligned_cols=107  Identities=19%  Similarity=0.051  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc--
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI--  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~--  104 (355)
                      -+|.|.|.+.   +.-..+++..|=|..+.   .-++..|...++|+|+|.-+-..........+. ..|.......+  
T Consensus        52 ~~A~Gyar~t---g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k  124 (528)
T 1q6z_A           52 GIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVK  124 (528)
T ss_dssp             HHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCS
T ss_pred             HHHHHHHHHh---CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhH
Confidence            3566666653   22233444456666543   345677888999999998875421110000111 01333322222  


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ...++  .+++++.+.+++|+..+..++ ||+.|++...
T Consensus       125 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d  161 (528)
T 1q6z_A          125 WSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD  161 (528)
T ss_dssp             CEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred             hhhcC--CCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence            23344  356677888899998888764 7999999865

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=86.33  E-value=1.6  Score=44.29  Aligned_cols=107  Identities=12%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeec---cccC--CC-ccHhhh
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSA---ERSS--AS-TDYYTR  100 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~---~~~~--~~-~d~~~~  100 (355)
                      -+|.|.|.+.   + -..+++..|=|+.+   ..-++..|-..++|+|+|+-+-........   ....  .. .|....
T Consensus        55 ~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~  127 (566)
T 2vbi_A           55 FSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEM  127 (566)
T ss_dssp             HHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHH
T ss_pred             HHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHH
Confidence            3466666552   3 23333344555544   334577788899999999987653211000   0000  01 133332


Q ss_pred             c--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        101 G--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       101 A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .  .--...++.  +++++.+.+++|+..+...+||+.|++..+
T Consensus       128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d  169 (566)
T 2vbi_A          128 ARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIACN  169 (566)
T ss_dssp             HHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            1  222345664  445667788888888877789999999764

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=86.14  E-value=1.6  Score=44.14  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEE--eCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--C
Q psy14560         28 LGTGIAFAAQYKGTGGVCFAL--YGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--Y  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~--~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G  103 (355)
                      +|.|.|.+.     +++.+|+  .|=|+++   ..-++..|-.-++|+|+|.-+-...........+...|......  -
T Consensus        60 ~A~Gyar~t-----g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~t  131 (564)
T 2q28_A           60 AAAASGFLT-----QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYA  131 (564)
T ss_dssp             HHHHHHHHH-----SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGS
T ss_pred             HHHHHHHHh-----CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhh
Confidence            355555542     3444444  4555443   33457778889999999998755321110000011123322211  1


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHc-CCCCeEEEEEee
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASS-GKGPLVLEVVTY  142 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~-~~gP~lIev~t~  142 (355)
                      -...+|.  +++++.+.+++|++.+.. ..||+.|++..+
T Consensus       132 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  169 (564)
T 2q28_A          132 KAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPAN  169 (564)
T ss_dssp             SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             heeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence            2244553  566788899999998887 469999998754

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=85.92  E-value=1.8  Score=44.80  Aligned_cols=101  Identities=14%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc-C-C
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG-D-Y  103 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A-~-G  103 (355)
                      +.+|.|+|++     .-++++.++++... . .+-..++.++..++|+++++.+-++. ...........|++-.. . |
T Consensus       374 ~~~a~G~A~~-----G~rp~~~~~~~F~~-~-a~dqi~~~~a~~~~pvv~~~~~~g~~-g~~G~tH~~~~d~~~~~~iP~  445 (621)
T 2o1s_A          374 VTFAAGLAIG-----GYKPIVAIYSTFLQ-R-AYDQVLHDVAIQKLPVLFAIDRAGIV-GADGQTHQGAFDLSYLRCIPE  445 (621)
T ss_dssp             HHHHHHHHHT-----TCEEEEEEETTGGG-G-GHHHHHHTTTTTTCCCEEEEESCBCC-CTTCGGGCBCSHHHHTTTSTT
T ss_pred             HHHHHHHHHC-----CCEEEEEehHhHHH-H-HHHHHHHHHHhcCCCEEEEEECCccC-CCCCCccCchHHHHHHhcCCC
Confidence            3456676664     35788888888763 1 22233667788999999999765541 11111112223443332 2 5


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      +.++.-  .|+.+...+++.|++.   .++|++|-.
T Consensus       446 l~v~~P--~d~~e~~~~l~~a~~~---~~~Pv~i~~  476 (621)
T 2o1s_A          446 MVIMTP--SDENECRQMLYTGYHY---NDGPSAVRY  476 (621)
T ss_dssp             CEEECC--SSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred             CEEEec--CCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence            554433  4788888888877752   378998854

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=85.70  E-value=3.6  Score=42.94  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG  106 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~  106 (355)
                      ++|.|+|+.    +.-+++++.+.+.+.   -..+++..++..++|+++++.+.+++.........+..|++.+. .+|.
T Consensus       416 ~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr-~iP~  487 (669)
T 2r8o_A          416 AIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLR-VTPN  487 (669)
T ss_dssp             HHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TSTT
T ss_pred             HHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhc-CCCC
Confidence            455566554    445677777766553   12455778899999999998888876432222222334444432 2344


Q ss_pred             EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560        107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus       107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      ++| .=.|+.++..+++.|++.   .++|++|-
T Consensus       488 l~V~~Pad~~E~~~~l~~a~~~---~~~Pv~i~  517 (669)
T 2r8o_A          488 MSTWRPCDQVESAVAWKYGVER---QDGPTALI  517 (669)
T ss_dssp             CEEECCSSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred             CEEEecCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence            333 234788887887777642   37899984

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=85.55  E-value=1.7  Score=44.47  Aligned_cols=105  Identities=13%  Similarity=-0.044  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CCc
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYI  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~  104 (355)
                      -+|.|.|.+.   +.-..+++..|=|.++.   .-++..|-.-++|+|+|.-+-..........+  ..|.....  .--
T Consensus        57 ~~A~GyAr~t---gk~~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~tk  128 (590)
T 1v5e_A           57 MAAVMQSKFG---GNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAV  128 (590)
T ss_dssp             HHHHHHHHTT---CCCCEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCCHHHHHTTCS
T ss_pred             HHHHHHHHHH---CCCEEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccCHHHHHHhhcc
Confidence            3455555441   22233444446666543   33566777889999999987653221111111  12332221  112


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t~  142 (355)
                      ...++  .+++++.+.+++|++.+..++ ||+.| +...
T Consensus       129 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~d  164 (590)
T 1v5e_A          129 YNRRV--AYAEQLPKLVDEAARMAIAKRGVAVLE-VPGD  164 (590)
T ss_dssp             EEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEE-EETT
T ss_pred             EEEEe--CCHHHHHHHHHHHHHHHhcCCCceEEE-Eccc
Confidence            24455  367788899999999998877 99999 7653

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=84.95  E-value=3.9  Score=42.53  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-Cc
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YI  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~  104 (355)
                      ++|.|+|+.    +.-++++..+.=.+.   -.++++..++..++|+++++.+.+++.........+..|++.. +. |+
T Consensus       411 ~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l  483 (651)
T 2e6k_A          411 AILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNL  483 (651)
T ss_dssp             HHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTC
T ss_pred             HHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCc
Confidence            456676654    435777776643331   1345578889999999999988887654222222333454443 22 44


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      .++.  =.|+.++..+++.|++.   .++|++|-.
T Consensus       484 ~V~~--Pad~~E~~~~l~~A~~~---~~~Pv~i~~  513 (651)
T 2e6k_A          484 FVIR--PADAYETFYAWLVALRR---KEGPTALVL  513 (651)
T ss_dssp             EEEC--CSSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred             EEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence            4443  34788888888877752   368998854

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=84.46  E-value=2.1  Score=43.78  Aligned_cols=107  Identities=15%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CCcc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYIP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~  105 (355)
                      +|.|.|.+.   +.-.++++..|=|+++.   .-++..|-.-++|+|+|.-+-..........+  ..|.....  .--.
T Consensus        84 aA~GyAr~t---gkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~  155 (604)
T 2x7j_A           84 FALGLAKAK---QRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKF  155 (604)
T ss_dssp             HHHHHHHHH---TSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSC
T ss_pred             HHHHHHHhh---CCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheee
Confidence            455666552   22334444556666553   33577788889999999987543211110011  11222111  1113


Q ss_pred             eEEEeCCCH-----HHHHHHHHHHHHHHHc-CCCCeEEEEEee
Q psy14560        106 GIWVDGMDV-----LAVREASKFAVNYASS-GKGPLVLEVVTY  142 (355)
Q Consensus       106 ~~~VdG~D~-----~~v~~a~~~Al~~ar~-~~gP~lIev~t~  142 (355)
                      ..+|...+.     ..+.+.+++|+..+.. ..||+.|++..+
T Consensus       156 ~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  198 (604)
T 2x7j_A          156 FTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR  198 (604)
T ss_dssp             EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             eeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence            455543221     1277888999988887 469999999865

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=84.00  E-value=5.2  Score=42.20  Aligned_cols=101  Identities=19%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP  105 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~  105 (355)
                      +.+|.|+|+.    +.-++++.++.+=+  + .....+..++..++||+++....+.+.........+..|++-+. .+|
T Consensus       461 v~~AaGlA~~----~G~~Pv~~~f~~F~--~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr-~iP  532 (711)
T 3uk1_A          461 SAAINGLVLH----GGYKPFGGTFLTFS--D-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLR-LIP  532 (711)
T ss_dssp             HHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TST
T ss_pred             HHHHHHHHHc----CCCEEEEEEhHHHH--H-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHh-cCC
Confidence            4456676653    24567777664432  2 23456777889999999999888765432222223334444332 344


Q ss_pred             eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560        106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus       106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      +++| .=.|+.++..+++.|++    .++|++|-
T Consensus       533 nl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir  562 (711)
T 3uk1_A          533 NLDVWRPADTVETAVAWTYAVA----HQHPSCLI  562 (711)
T ss_dssp             TCEEECCSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred             CCEEEecCCHHHHHHHHHHHHh----cCCCEEEE
Confidence            4433 22477777777777764    57899883

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=83.74  E-value=3.5  Score=43.20  Aligned_cols=101  Identities=20%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhcCCCC-eEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560         27 PLGTGIAFAAQYKGTGG-VCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP  105 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~-~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~  105 (355)
                      ++|.|+|+.    +.-+ +++..+.+-+.   -.++++..++..++||++++...+++.........+..|++-+. .+|
T Consensus       423 g~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr-~iP  494 (680)
T 1gpu_A          423 AIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFR-SLP  494 (680)
T ss_dssp             HHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-TSS
T ss_pred             HHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhc-CCC
Confidence            356666654    4346 77777655442   13456778899999999998877766432222222334444332 344


Q ss_pred             eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560        106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus       106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      +++| .=.|+.++..+++.|++.   .++|++|-
T Consensus       495 ~l~V~~Pad~~e~~~~l~~A~~~---~~~Pv~i~  525 (680)
T 1gpu_A          495 NIQVWRPADGNEVSAAYKNSLES---KHTPSIIA  525 (680)
T ss_dssp             SCEEECCCSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred             CCEEEecCCHHHHHHHHHHHHHh---CCCcEEEE
Confidence            4433 224777887777777642   37899984

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=83.66  E-value=4.9  Score=41.12  Aligned_cols=104  Identities=15%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhcCCCCeE--EEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--
Q psy14560         28 LGTGIAFAAQYKGTGGVC--FALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~v--v~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--  103 (355)
                      +|.|.|.+    ..+++.  ++..|=|+++.   .-++..|..-++|+|+|.-+-..........+  ..|.......  
T Consensus        80 ~A~GyAr~----tgg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~t  150 (616)
T 2pan_A           80 MAEGYTRA----TAGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVS  150 (616)
T ss_dssp             HHHHHHHH----STTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGS
T ss_pred             HHHHHHHh----cCCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHH
Confidence            45555554    113444  44556666543   33577788889999999987653221111111  1233333221  


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      -...++  .++.++.+++++|++.+..+ .||+.|++..+
T Consensus       151 k~~~~v--~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d  188 (616)
T 2pan_A          151 KMAVTV--REAALVPRVLQQAFHLMRSGRPGPVLVDLPFD  188 (616)
T ss_dssp             SEEEEC--CSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             Hhhccc--CCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence            223455  35678889999999988876 58999999753

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=83.62  E-value=1.6  Score=45.17  Aligned_cols=100  Identities=14%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CC
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DY  103 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G  103 (355)
                      +.+|+|+|++     .-++++.++.+...  -.+-..++.++..++|+++++.+-++. ...........|++-..  -|
T Consensus       377 ~~~a~G~A~~-----G~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~-g~dG~tH~~~~d~a~~r~iP~  448 (629)
T 2o1x_A          377 VTTAAGMALQ-----GMRPVVAIYSTFLQ--RAYDQVLHDVAIEHLNVTFCIDRAGIV-GADGATHNGVFDLSFLRSIPG  448 (629)
T ss_dssp             HHHHHHHHHT-----TCEEEEEEEHHHHG--GGHHHHHHTTTTTTCCCEEEEESBBCC-CTTCTTTCBCSHHHHTTTSTT
T ss_pred             HHHHHHHHHc-----CCEEEEEecHHHHH--HHHHHHHHHHhhcCCCEEEEEECCccC-CCCCcccCccHHHHHHHccCC
Confidence            3456666664     35777888877652  122234667888999999998665541 11111112223433322  15


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEV  139 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev  139 (355)
                      +..+.  =.|+.++..+++.|++.    ++|++|-.
T Consensus       449 l~v~~--P~d~~e~~~~~~~a~~~----~~Pv~i~~  478 (629)
T 2o1x_A          449 VRIGL--PKDAAELRGMLKYAQTH----DGPFAIRY  478 (629)
T ss_dssp             CEEEC--CSSHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred             cEEEe--cCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence            54443  34788888888887753    68998854

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=83.34  E-value=4.5  Score=41.81  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcc
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIP  105 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~  105 (355)
                      +.+|+|+|++    +..+++++.++++..   ..++.+..++..++|+++++.+-+++.......+.+..|++-+. .+|
T Consensus       368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~-~iP  439 (616)
T 3mos_A          368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFR-SVP  439 (616)
T ss_dssp             HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHH-TST
T ss_pred             HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhc-CCC
Confidence            3445566554    433567788999874   23455777788999999987766654321111222233443322 355


Q ss_pred             eEEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560        106 GIWV-DGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus       106 ~~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      .+.| .=.|+.++..+++.|+    ..++|++|-
T Consensus       440 ~l~V~~P~d~~e~~~~l~~a~----~~~gp~~ir  469 (616)
T 3mos_A          440 TSTVFYPSDGVATEKAVELAA----NTKGICFIR  469 (616)
T ss_dssp             TEEEECCCSHHHHHHHHHHHH----TCCSEEEEE
T ss_pred             CCEEEecCCHHHHHHHHHHHH----hcCCCEEEE
Confidence            5544 3347777777766554    457898774

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=82.19  E-value=5.3  Score=41.97  Aligned_cols=101  Identities=19%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCcce
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPG  106 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~~~  106 (355)
                      .+|.|+|+.    +.-++++..+.--+.-   ...++..++..++||++++...+++.........+..|++-+. .+|.
T Consensus       441 ~~A~GlA~~----gG~~P~~~tf~~Fs~f---~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr-~iPn  512 (690)
T 3m49_A          441 AAMNGIALH----GGLKTYGGTFFVFSDY---LRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALR-AMPN  512 (690)
T ss_dssp             HHHHHHHHH----SSCEEEEEEEGGGGGG---GHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHH-TSTT
T ss_pred             HHHHHHHHc----CCCEEEEEecHHHHHH---HHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHh-cCCC
Confidence            455666654    3456676655333310   1224667889999999999888765432222223334544332 3344


Q ss_pred             EEE-eCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560        107 IWV-DGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus       107 ~~V-dG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      ++| .=.|+.++..+++.|++   ..++|++|-
T Consensus       513 l~V~~Pad~~E~~~~l~~Ai~---~~~~Pv~ir  542 (690)
T 3m49_A          513 VSVIRPADGNESVAAWRLALE---STNKPTALV  542 (690)
T ss_dssp             CEEECCSSHHHHHHHHHHHHH---CSSSCEEEE
T ss_pred             CEEEeeCCHHHHHHHHHHHHH---cCCCCEEEE
Confidence            333 22467777777777664   236899984

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=81.33  E-value=4.3  Score=41.23  Aligned_cols=106  Identities=20%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--cc
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IP  105 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~~  105 (355)
                      +|.|.|.+.   +.-.++++..|=|+++-   .-++..|-.-++|+|+|.-+-..........+  ..|.......  -.
T Consensus        64 aAdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~~~~Q--e~d~~~~~~~~tk~  135 (578)
T 3lq1_A           64 FALGLAKAS---KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNVGAPQ--AMDQLHLYGSHVKD  135 (578)
T ss_dssp             HHHHHHHHH---CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTSSCTT--CCCCTTTTGGGSSE
T ss_pred             HHHHHHHhh---CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCC--CcCHhhHHhhheee
Confidence            455665553   33344555557777654   23577888899999999876432110000001  1122221111  12


Q ss_pred             eEEEeC-CCHH----HHHHHHHHHHHHHHcC-CCCeEEEEEe
Q psy14560        106 GIWVDG-MDVL----AVREASKFAVNYASSG-KGPLVLEVVT  141 (355)
Q Consensus       106 ~~~VdG-~D~~----~v~~a~~~Al~~ar~~-~gP~lIev~t  141 (355)
                      ..+|.. .+..    .+..++++|+..|..+ .||+.|++..
T Consensus       136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~  177 (578)
T 3lq1_A          136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL  177 (578)
T ss_dssp             EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred             EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence            344432 2322    2345788888888775 6999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d2ozla1	361	c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de	3e-32
d2ozla1	361	c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de	9e-25
d2ozla1	361	c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de	3e-08
d1umda_	362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	1e-20
d1umda_	362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	2e-08
d1umda_	362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	1e-04
d1qs0a_	407	c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B	1e-19
d1qs0a_	407	c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B	2e-08
d1qs0a_	407	c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B	1e-05
d1w85a_	365	c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd	2e-19
d1w85a_	365	c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd	4e-09
d1w85a_	365	c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd	3e-07
d2bfda1	395	c.36.1.11 (A:6-400) Branched-chain alpha-keto acid	9e-18
d2bfda1	395	c.36.1.11 (A:6-400) Branched-chain alpha-keto acid	9e-10
d2bfda1	395	c.36.1.11 (A:6-400) Branched-chain alpha-keto acid	3e-06

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-32
 Identities = 115/192 (59%), Positives = 141/192 (73%), Gaps = 12/192 (6%)

Query: 1   MQQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNF 60
            +     ++   KNFYGGNGIVGAQVPLG GIA A +Y G   VC  LYGDGA+NQGQ F
Sbjct: 117 AKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIF 176

Query: 61  EAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYIPGIWVDGMDVLAVREA 120
           EAYN+A LW +PCI++CENN YGMGTS ER++ASTDYY RGD+IPG+ VDGMD+L VREA
Sbjct: 177 EAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREA 236

Query: 121 SKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKML 168
           ++FA  Y  SGKGP+++E+ TYRY GH MSDPG S+             DPI   K++M+
Sbjct: 237 TRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMV 296

Query: 169 NSELATVDELKE 180
           NS LA+V+ELKE
Sbjct: 297 NSNLASVEELKE 308

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 9e-25
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRG 337
           +A++ATFE K   LH+L EGP     +T++D L YYR MQT+RR+E  A  LYK+K+IRG
Sbjct: 1   FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRG 60

Query: 338 FCHLYSGQ 345
           FCHL  GQ
Sbjct: 61  FCHLCDGQ 68

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 49/85 (57%), Positives = 58/85 (68%), Gaps = 12/85 (14%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EAC VG+ A +   D +I+AYR HG+T+  G+SV  +L+ELTGR               C
Sbjct: 69  EACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGR------------KGGC 116

Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQ 264
           AKGKGGSMHMYAKNFYGGNGIVGAQ
Sbjct: 117 AKGKGGSMHMYAKNFYGGNGIVGAQ 141

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score = 89.6 bits (221), Expect = 1e-20
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 12  PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
             NF+     + + VP   G A + +   TG V    +GDGA+++G  +   N A + G 
Sbjct: 131 ALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGA 190

Query: 72  PCIYVCENNGYGMGTSAERSSASTDYYTRGDY--IPGIWVDGMDVLAVREASKFAVNYAS 129
           P +++ ENN Y +       + S     +     IPG  VDGMDVLA     K AV  A 
Sbjct: 191 PAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERAR 250

Query: 130 SGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELATVDEL 178
            G+GP ++E+  YRY  HS +D  + +R           DPI  F+  +    L   +  
Sbjct: 251 RGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWE 310

Query: 179 KE 180
           ++
Sbjct: 311 ED 312

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 302 VTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
           + +  +     YR M   R L+     L +      F    +G 
Sbjct: 26  LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGH 68

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 180 EACAVGMRAVMR-EQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWEC 238
           EA  V +   +R   D +   YR HG    +G+ +  +L ++   +    KG+       
Sbjct: 69  EAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH-- 126

Query: 239 CAKGKGGSMHMYAKNFYGGNGIVGAQT 265
                       A NF+     + +  
Sbjct: 127 --------PGSKALNFFTVASPIASHV 145

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

 Score = 86.8 bits (214), Expect = 1e-19
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 12  PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI 71
              F+  +G +  Q     G A A+  KG   +  A  GDGA+ +     A   A ++  
Sbjct: 173 EAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRA 232

Query: 72  PCIYVCENNGYGMGTSAERSSASTDYYTR---GDYIPGIWVDGMDVLAVREASKFAVNYA 128
           P I    NN + + T    +   +  +     G  I  + VDG D +AV  AS++A   A
Sbjct: 233 PVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERA 292

Query: 129 SSGKGPLVLEVVTYRYSGHSMSDPGTSFR-----------DPITSFKEKMLNSELATVDE 177
             G GP ++E VTYR   HS SD  + +R           DPI   K+ ++     + +E
Sbjct: 293 RRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEE 352

Query: 178 LKE 180
            + 
Sbjct: 353 HQA 355

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA   G    +   D     YR         VS+  ++ +L        KG+        
Sbjct: 112 EAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSV 171

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 304 VTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
           +  Q      R M   R  ++      ++K +  F     G+
Sbjct: 71  IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGE 111

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 86.1 bits (212), Expect = 2e-19
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 10  PSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLW 69
           P   N      I+GAQ     G+A   + +G   V     GDG ++QG  +E  N A  +
Sbjct: 129 PEGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAF 188

Query: 70  GIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNY 127
             P I+V +NN + + T  E+ + +     +     IPGI VDGMD LAV  A K A   
Sbjct: 189 KAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARER 248

Query: 128 ASSGKGPLVLEVVTYRYSGHSMSDPGTSF------------RDPITSFKEKMLNSELATV 175
           A +G+GP ++E + +RY  H+MS    +             +DP+  F++ +    L + 
Sbjct: 249 AINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSE 308

Query: 176 DELKE 180
           +E   
Sbjct: 309 EEENN 313

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 54.9 bits (131), Expect = 4e-09
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 297 GPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
                  ++ +      R+M   R L+  + +L ++  + GF    +GQ
Sbjct: 31  NEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQ 78

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 10/72 (13%), Positives = 20/72 (27%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           EA  +     + ++D I+  YR        G+ ++       G   G    +G       
Sbjct: 79  EASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQ 138

Query: 240 AKGKGGSMHMYA 251
                  +    
Sbjct: 139 IIIGAQYIQAAG 150

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 9e-18
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 14/181 (7%)

Query: 14  NFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPC 73
           +F   +  +  Q+P   G A+AA+      V    +G+GA+++G     +N A     P 
Sbjct: 151 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPI 210

Query: 74  IYVCENNGYGMGTSAERSSASTDYYTRGD--YIPGIWVDGMDVLAVREASKFAVNYASSG 131
           I+ C NNGY + T             RG    I  I VDG DV AV  A+K A   A + 
Sbjct: 211 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAE 270

Query: 132 KGPLVLEVVTYRYSGHSMSDPGTSFR------------DPITSFKEKMLNSELATVDELK 179
             P ++E +TYR    S SD  ++FR             PI+  +  +L+      ++ K
Sbjct: 271 NQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK 330

Query: 180 E 180
            
Sbjct: 331 A 331

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 9e-10
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 297 GPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQ 345
            PS    + K+  L  Y+ M  +  ++       ++  I  +   Y G+
Sbjct: 40  NPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GE 87

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 180 EACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTGCAKGKGPISWECC 239
           E   VG  A +   D +    R  G        +   +++  G  +   KG+        
Sbjct: 88  EGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVH--- 144

Query: 240 AKGKGGSMHMYAKNFYGGNGIVGAQT 265
                       ++F   +  +  Q 
Sbjct: 145 -------YGCKERHFVTISSPLATQI 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	100.0
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	100.0
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	100.0
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.82
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.8
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	99.8
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	99.79
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	99.75
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	99.75
d2r8oa2	331	Transketolase (TK), PP module {Escherichia coli [T	99.73
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.73
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	99.72
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.71
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	99.68
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.68
d1r9ja2	336	Transketolase (TK), PP module {Leishmania mexicana	99.68
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.68
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	99.67
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	99.67
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	99.66
d1gpua1	335	Transketolase (TK), PP module {Baker's yeast (Sacc	99.66
d1itza1	338	Transketolase (TK), PP module {Maize (Zea mays) [T	99.64
d2ieaa2	415	Pyruvate dehydrogenase E1 component, PP module {Es	99.34
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	99.27
d2c42a2	447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	97.51
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	95.09
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	94.65
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	94.19
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	93.91
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	93.89
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	93.52
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	92.97
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	92.53
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	92.41
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	91.2
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	89.75
d1r9ja1	190	Transketolase (TK), Pyr module {Leishmania mexican	85.28
d2r8oa1	195	Transketolase (TK), Pyr module {Escherichia coli [	85.25
d1gpua2	197	Transketolase (TK), Pyr module {Baker's yeast (Sac	85.08

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.4e-39  Score=312.21  Aligned_cols=187  Identities=29%  Similarity=0.435  Sum_probs=171.7

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCc
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYG   83 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~   83 (355)
                      .+|+..+ ..++++.++++|.++|+|+|+|+|.|+++.+.++||++|||++++|.|||+||+|+.++||+||||+||+|+
T Consensus       124 s~H~~~~-~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~a  202 (362)
T d1umda_         124 PEHPGSK-ALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA  202 (362)
T ss_dssp             SSCCCBT-TTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE
T ss_pred             ccccccc-ccCcccccccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHHHHhhhccCCeeeeeeecccc
Confidence            4555555 788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----
Q psy14560         84 MGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----  157 (355)
Q Consensus        84 ~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----  157 (355)
                      ++++...+.+.+++.++|  +|+++++|||+|+.+|++++++|++++|++++|+|||+.|+|+.||+.+|++..||    
T Consensus       203 ist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~E  282 (362)
T d1umda_         203 ISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEE  282 (362)
T ss_dssp             TTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHH
T ss_pred             cccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCCCccccchhhcchhh
Confidence            999998888888888874  79999999999999999999999999999999999999999999999999887788    


Q ss_pred             -------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        158 -------DPITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       158 -------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                             |||.+|+++|++.|++++++++++..+....+.+
T Consensus       283 i~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~  323 (362)
T d1umda_         283 VAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER  323 (362)
T ss_dssp             HHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999997776665444433

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.2e-38  Score=315.10  Aligned_cols=186  Identities=30%  Similarity=0.413  Sum_probs=167.7

Q ss_pred             ccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcc
Q psy14560          5 MIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGM   84 (355)
Q Consensus         5 ~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~   84 (355)
                      +|+..+ ..++++.++++|.++|.|+|+|+|.|+++.++++||++|||++++|.|||+||+|+.++|||||||+||+|++
T Consensus       167 ~h~~~~-~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~ai  245 (407)
T d1qs0a_         167 IMYSVR-EAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAI  245 (407)
T ss_dssp             TCCCBG-GGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEET
T ss_pred             cccccc-ccceeccccccccccchhhhhHHHHhhccCcceecccccccccccchHHHHHHHHhccCcceEEEEEEecccc
Confidence            344333 5788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccCC-CccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee----
Q psy14560         85 GTSAERSSA-STDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR----  157 (355)
Q Consensus        85 ~~~~~~~~~-~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR----  157 (355)
                      +|+...... ..+++.+  ++|+++++|||+|+.+|++++++|++++|+++||+|||+.|||+.||+.+|++..||    
T Consensus       246 st~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~YR~~~E  325 (407)
T d1qs0a_         246 STFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADD  325 (407)
T ss_dssp             TEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTH
T ss_pred             cccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCCCCCccccccccCCHHH
Confidence            998765544 4567776  589999999999999999999999999999999999999999999999998888898    


Q ss_pred             -------cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        158 -------DPITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       158 -------DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                             |||.+|+++|++.|++++++++++.++....+.+
T Consensus       326 ~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~  366 (407)
T d1qs0a_         326 WSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA  366 (407)
T ss_dssp             HHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                   9999999999999999999998777666554433

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=313.62  Aligned_cols=188  Identities=29%  Similarity=0.440  Sum_probs=163.0

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCC
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY   82 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~   82 (355)
                      ..+|+..+ ..++++.++++|.++|+|+|+|+|.|+.+.+++++|++|||++++|.|||+||+|+.++||+||||+||+|
T Consensus       141 gs~H~~~~-~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~y  219 (395)
T d2bfda1         141 MPVHYGCK-ERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY  219 (395)
T ss_dssp             CSSCCCBT-TTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSE
T ss_pred             cccccccc-ccccccccccccccccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEeccc
Confidence            45666665 67889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee---
Q psy14560         83 GMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR---  157 (355)
Q Consensus        83 ~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR---  157 (355)
                      +++++...+++..+++++|  +|+++++|||+|+.+|++++++|++++|++++|+|||+.|+|+.+|+.+|++..||   
T Consensus       220 aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~  299 (395)
T d2bfda1         220 AISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVD  299 (395)
T ss_dssp             ETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-----------
T ss_pred             ccccccchhhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCcCCcccccCHH
Confidence            9999999888888898874  69999999999999999999999999999999999999999999999888777787   


Q ss_pred             --------c-chhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        158 --------D-PITSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       158 --------D-pIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                              | ||.+|+++|++.|++++++++++.++....+.+
T Consensus       300 Ei~~w~k~DdPi~~~~~~Li~~g~~s~ee~~~i~~e~~~eV~~  342 (395)
T d2bfda1         300 EVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVME  342 (395)
T ss_dssp             --------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                    4 999999999999999999987776655444433

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.7e-38  Score=308.14  Aligned_cols=187  Identities=30%  Similarity=0.492  Sum_probs=166.5

Q ss_pred             cCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceee
Q psy14560          8 INPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTS   87 (355)
Q Consensus         8 ~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~   87 (355)
                      ..++..++.+.++++|.++|.|+|+|+|.|+++.+++++|++|||++++|.|||+||+|+.|+||+||||+||+|+++++
T Consensus       127 ~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~  206 (365)
T d1w85a_         127 QIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTP  206 (365)
T ss_dssp             CCCTTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEE
T ss_pred             CCCCCceeeccccccCccccchhhHHhhhhhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEeccccccc
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCC-CCccee-------
Q psy14560         88 AERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD-PGTSFR-------  157 (355)
Q Consensus        88 ~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D-~~~~YR-------  157 (355)
                      ...+....+++.++  +|+++++|||+|+.+|++++++|++++|+++||+|||+.|+|+.||+.+| ++..||       
T Consensus       207 ~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~  286 (365)
T d1w85a_         207 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENE  286 (365)
T ss_dssp             GGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHH
T ss_pred             ccccccccchhhhcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccEEEEeecccccccCCcCCcccccCChHHHHH
Confidence            98888878888874  79999999999999999999999999999999999999999999999765 455788       


Q ss_pred             ----cchhHHHHHHHHhhhhhhhhHHHHHHhhHHHhhcccc
Q psy14560        158 ----DPITSFKEKMLNSELATVDELKEACAVGMRAVMREQD  194 (355)
Q Consensus       158 ----DpIr~fee~Li~~Gl~t~~e~qEa~qvg~~~al~~~D  194 (355)
                          |||.+|+++|++.|++++++++++..+....+.++-+
T Consensus       287 w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~  327 (365)
T d1w85a_         287 WAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIK  327 (365)
T ss_dssp             HHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                9999999999999999999998777776555544333

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-38  Score=308.31  Aligned_cols=179  Identities=65%  Similarity=1.173  Sum_probs=166.6

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSS   92 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~   92 (355)
                      .++++.++++|.++|+|+|+|+|.|+++.+++|+|++|||++++|.|||+||+|+.++||+||||+||+|+++|+...+.
T Consensus       129 ~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~  208 (361)
T d2ozla1         129 KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAA  208 (361)
T ss_dssp             TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHC
T ss_pred             ccccCccccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCcccCCCchhcc
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             CCccHhhhcCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCCCccee------------cch
Q psy14560         93 ASTDYYTRGDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDPGTSFR------------DPI  160 (355)
Q Consensus        93 ~~~d~~~~A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~~~~YR------------DpI  160 (355)
                      +..++.++++|+++++|||+|+.+|++++++|++++|+++||+|||+.|+|+.||+.+|++..||            |||
T Consensus       209 ~~~~~~~~~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi  288 (361)
T d2ozla1         209 ASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPI  288 (361)
T ss_dssp             SCCCGGGTTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHH
T ss_pred             ccccccccccccceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeeecCCCCcccccccccCCHHHHHhhhhcCCHH
Confidence            77888888899999999999999999999999999999999999999999999999999877777            999


Q ss_pred             hHHHHHHHHhhhhhhhhHHHHHHhhHHHhhc
Q psy14560        161 TSFKEKMLNSELATVDELKEACAVGMRAVMR  191 (355)
Q Consensus       161 r~fee~Li~~Gl~t~~e~qEa~qvg~~~al~  191 (355)
                      .+|+++|+++|++++++++++..+....+.+
T Consensus       289 ~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~  319 (361)
T d2ozla1         289 MLLKDRMVNSNLASVEELKEIDVEVRKEIED  319 (361)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997776665544444

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.82  E-value=1.9e-20  Score=171.15  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=109.3

Q ss_pred             CccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC
Q psy14560          2 QQCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG   81 (355)
Q Consensus         2 ~~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~   81 (355)
                      .+++++..|+++...+++|+||+++|.|+|+++|    .|+++|+|++|||++.++.  ..|.||+++++|+++||.||+
T Consensus        34 ~~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a----~p~~~vv~i~GDGsf~m~~--~eL~ta~~~~lpi~iiV~nN~  107 (229)
T d2djia3          34 IRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNT----YPDRQVWNIIGDGAFSMTY--PDVVTNVRYNMPVINVVFSNT  107 (229)
T ss_dssp             GGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHHG--GGHHHHHHTTCCCEEEEEECS
T ss_pred             HHHcccCCCCeEEecCCcccccccchhhhhhhhh----ccccccccccccccccccc--chhhhhhcccCCceEEEeCCc
Confidence            4678888998888888999999999999999998    5899999999999976542  349999999999988988887


Q ss_pred             -Ccceee---------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 -YGMGTS---------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 -~~~~~~---------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                       |++...         .......+||.++  |+|+++++|+  +++++.+++++|++ .++.++|+|||+.+.+.
T Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~-~~~~~~p~lIev~v~~~  179 (229)
T d2djia3         108 EYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVA-ANKAGHTVVIDCKITQD  179 (229)
T ss_dssp             BCTHHHHHHHHHCSCCCSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHH-HHHTTCCEEEEEECCSC
T ss_pred             hhhhhhHHHHhhcCCCCcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHH-hcCCCCeEEEEEEeCCC
Confidence             765321         1123356899886  5799999997  57899999999987 44556999999998763

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.80  E-value=3.6e-20  Score=169.20  Aligned_cols=132  Identities=15%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|+++|    .|+++|||++|||++.+. . ..|.||+++++|+++||.||+ 
T Consensus        38 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la----~p~~~Vv~i~GDG~f~m~-~-~EL~Ta~~~~lpi~~vV~NN~~  111 (228)
T d2ez9a3          38 RHLKLTPSNRHITSNLFATMGVGIPGAIAAKLN----YPERQVFNLAGDGGASMT-M-QDLATQVQYHLPVINVVFTNCQ  111 (228)
T ss_dssp             HHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHH-G-GGHHHHHHTTCCCEEEEEECSB
T ss_pred             HHccCCCCceeeeecccccccccchhhhhhhhh----hccceeEeecCCcccccc-c-hhhhhhccccCceEEEEecccc
Confidence            577888898888888999999999999999998    589999999999997553 2 238999999999999999887 


Q ss_pred             Ccceee----------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTS----------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~----------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |++...          .......+||.+.  ++|+++++|+  ++.++..++++|.  +.+.++|+|||+.+.+-
T Consensus       112 yg~i~~~q~~~~~~~~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~--al~~~~p~lIev~vd~d  182 (228)
T d2ez9a3         112 YGWIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAK--AIAQHEPVLIDAVITGD  182 (228)
T ss_dssp             CHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHH--HHTTTSCEEEEEECCCC
T ss_pred             chhhhhhhhhcccCCcccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHH--HHcCCCeEEEEEEECCC
Confidence            765321          1123356899887  4799999997  4567777777754  44678999999998754

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.80  E-value=7.2e-20  Score=163.66  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=102.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++.+|+++...+++|+||+++|.|+|+++|    .|+++|||++|||++.+..  .+|.|++++++|+++||.||+ 
T Consensus        45 ~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a----~p~~~Vv~i~GDGsf~~~~--~el~t~~~~~lpi~ivV~NN~~  118 (198)
T d2ihta3          45 LFARADQPFGFLTSAGCSSFGYGIPAAIGAQMA----RPDQPTFLIAGDGGFHSNS--SDLETIARLNLPIVTVVVNNDT  118 (198)
T ss_dssp             HHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHH----STTSCEEEEEEHHHHHHTG--GGHHHHHHHTCCCEEEEEECSB
T ss_pred             HHcCcCCCCeEEecCCcccchhHHHHHHHHhhh----hcccceEeecccccccccc--hhhhhhhhhhhhhhHHHhhccc
Confidence            567888998888888899999999999999998    5899999999999975432  338999999999999998887 


Q ss_pred             Ccceee-----------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTS-----------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~-----------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++...           .......+||.++  |+|+++++|+  +++++.+++++|    ++.++|+|||+.+.+
T Consensus       119 ~g~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a----~~~~~p~lIeV~vd~  187 (198)
T d2ihta3         119 NGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKG----AELGRPFLIEVPVNY  187 (198)
T ss_dssp             CHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHH----HTSSSCEEEEEEBCC
T ss_pred             cceEeeeeccccccccccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEcCC
Confidence            665321           1122346789887  4799999997  577776666655    467899999999864

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.79  E-value=1.6e-19  Score=162.42  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=104.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.....++.|+||+++|+|+|+++|    .|+++|||++|||++.+.. .| |.||++++||+++||.||+ 
T Consensus        35 ~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A----~p~~~Vi~i~GDGsf~m~~-~E-l~Ta~r~~lpi~iiV~NN~~  108 (208)
T d1ybha3          35 QFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVA----NPDAIVVDIDGDGSFIMNV-QE-LATIRVENLPVKVLLLNNQH  108 (208)
T ss_dssp             HSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHTT-TH-HHHHHHTTCCEEEEEEECSB
T ss_pred             HhcccCCCceeccccccccchhhhhhHHHHHhc----CCCCcEEEEccCCchhhhh-hh-HHHHHHhCCCEEEEEEeccc
Confidence            578889999998889999999999999999998    5899999999999965532 23 8899999999999999887 


Q ss_pred             Ccceeec------------------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q psy14560         82 YGMGTSA------------------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVT  141 (355)
Q Consensus        82 ~~~~~~~------------------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t  141 (355)
                      |++....                  ......+||.+.  |+|+++++|+  +++++.+++++|+    +.++|+|||+.+
T Consensus       109 ~g~i~~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i  182 (208)
T d1ybha3         109 LGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML----DTPGPYLLDVIC  182 (208)
T ss_dssp             CHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH----HSSSCEEEEEEC
T ss_pred             cccceehhhhcccccccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHH----hCCCCEEEEEEE
Confidence            7653211                  111234688886  4799999997  6788877777766    468999999998


Q ss_pred             eee
Q psy14560        142 YRY  144 (355)
Q Consensus       142 ~R~  144 (355)
                      .+.
T Consensus       183 d~~  185 (208)
T d1ybha3         183 PHQ  185 (208)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            753

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.2e-18  Score=158.78  Aligned_cols=130  Identities=26%  Similarity=0.267  Sum_probs=104.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++.+..|++....+++++||+++|.|+|+++|    .|+++||+++|||++++. ..| |.||+++++|+++||+||+ 
T Consensus        46 ~~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA----~p~r~Vv~i~GDGsf~m~-~~E-L~Ta~r~~l~i~iiV~nN~~  119 (227)
T d1t9ba3          46 QHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVA----KPESLVIDIDGDASFNMT-LTE-LSSAVQAGTPVKILILNNEE  119 (227)
T ss_dssp             HHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHH----CTTSEEEEEEEHHHHHHH-GGG-HHHHHHHTCCCEEEEEECSS
T ss_pred             HHcCCCCCceEeeecccccchhhHHHHHHHHhc----CCCCeEEEeCCCcccccc-hHH-HHHHhhcCCceEEEEEeccc
Confidence            467888898888888999999999999999998    589999999999997553 233 8999999999999988887 


Q ss_pred             Ccceee----------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeee
Q psy14560         82 YGMGTS----------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRY  144 (355)
Q Consensus        82 ~~~~~~----------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~  144 (355)
                      |+....          .......+||.+.  |+|+++++|.  +.+++.+++++|+    +.++|+|||+.+.+.
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lieV~vd~~  188 (227)
T d1t9ba3         120 QGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKK  188 (227)
T ss_dssp             CHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSS
T ss_pred             ccchhHHHhhhhccccccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHH----HCCCCEEEEEEECCC
Confidence            764321          1123346889887  5799999997  5777777777665    468999999999754

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.9e-18  Score=152.34  Aligned_cols=127  Identities=28%  Similarity=0.387  Sum_probs=97.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+.+.. .+.|+||+++|.|+|+++|    .|+++|||++|||++.+.. . .|.+|+++++|+++||.||+ 
T Consensus        44 ~~~~~~~~~~~~~-~~~g~mG~~~p~AiGa~la----~p~~~vv~i~GDG~f~~~~-~-el~ta~~~~lpv~~iV~nN~~  116 (183)
T d1q6za3          44 QRLNMRNPGSYYF-CAAGGLGFALPAAIGVQLA----EPERQVIAVIGDGSANYSI-S-ALWTAAQYNIPTIFVIMNNGT  116 (183)
T ss_dssp             HHCCCCSSSCEEE-CTTCCTTSHHHHHHHHHHH----CTTSCEEEEEEHHHHTTTG-G-GHHHHHHHTCCCEEEEEECSB
T ss_pred             HHHhhcccccccc-ccCCCcccchhHHHhhhhh----ccccceEEecccccccccc-H-HHHHHHHhCCCEEEEEEeccc
Confidence            5677778877655 4679999999999999998    5799999999999975532 2 38899999999888888776 


Q ss_pred             Ccceeec----------cccCCCccHhhhc--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560         82 YGMGTSA----------ERSSASTDYYTRG--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus        82 ~~~~~~~----------~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      |++....          ....+.+||.+.|  +|+++++|+  +++++.+++++|+    +.++|+|||+.|.
T Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lieV~T~  183 (183)
T d1q6za3         117 YGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL----SAKGPVLIEVSTV  183 (183)
T ss_dssp             CHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH----TCSSCEEEEEEBC
T ss_pred             cchhhhhhhcccccCcccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEeC
Confidence            7763211          1123456888874  699999997  6777777666654    5789999999873

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.3e-17  Score=159.85  Aligned_cols=133  Identities=21%  Similarity=0.216  Sum_probs=111.3

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhcC----------CCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYKG----------TGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~~----------~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||.++|.|+|.|+|.|+.+          .+..|+|++|||.+++|.+|||+++|+.++|. +++|+.||+
T Consensus       106 ~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~  185 (331)
T d2r8oa2         106 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG  185 (331)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhh
Confidence            4677789999999999999999988642          36789999999999999999999999999997 899999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceE-EEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGI-WVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~-~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      +.+..+..... ..++.++  ++||.++ .+||+|..++.+|+.+|.+   ..++|++|.+.|...+|.+.
T Consensus       186 ~~~~g~~~~~~-~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~---~~~kP~~Ii~~TikGkG~~~  252 (331)
T d2r8oa2         186 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPN  252 (331)
T ss_dssp             EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTT
T ss_pred             hcccccccccc-chhHHHHHHHcCCeeecccccchHHHHHHHHHHHHh---hcCCCccceeeeeeecCCcc
Confidence            88876665544 3566664  7999998 5799999888777766532   36789999999999888763

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.73  E-value=3.4e-18  Score=153.28  Aligned_cols=129  Identities=21%  Similarity=0.198  Sum_probs=97.5

Q ss_pred             cccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-C
Q psy14560          4 CMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-Y   82 (355)
Q Consensus         4 ~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~   82 (355)
                      .+.+..+++....++.|+||+++|+|+|+++|    .|+++|||++|||++.+.  ..+|.||+++++|+++||.||+ |
T Consensus        35 ~~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~iiV~NN~~~  108 (204)
T d1zpda3          35 RMKLPNGARVEYEMQWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGY  108 (204)
T ss_dssp             TCCCCTTCEEEECTTTCCTTTHHHHHHHHHHH----CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSC
T ss_pred             HhCCCCCCeEEcCCCCcccchhhHHHHHHHHh----CCCCceeccccccceeee--ecccchhhhcccccceEEEecccc
Confidence            34556676667778889999999999999998    589999999999997653  2349999999999988888886 7


Q ss_pred             cceeeccc----cCCCccHhhh-----------cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         83 GMGTSAER----SSASTDYYTR-----------GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        83 ~~~~~~~~----~~~~~d~~~~-----------A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      ++......    ...++||.+.           ++|+++++|+  ++.++.+++++|+.   +.++|+|||+.+.+
T Consensus       109 g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~---~~~gp~lieV~vd~  179 (204)
T d1zpda3         109 TIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALA---NTDGPTLIECFIGR  179 (204)
T ss_dssp             HHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred             cccceeccccccccchhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHH---cCCCcEEEEEEECc
Confidence            76432221    1234566543           2488899996  67888887777653   46899999998853

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.72  E-value=4.3e-18  Score=151.11  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=100.3

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      ++++...|+++...++.|.||+++|+|+|+++|    .|+++||+++|||++.+..  .+|.+++++++|+++||.||+ 
T Consensus        37 ~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vi~i~GDG~f~~~~--~el~t~~~~~l~~~iiv~nN~~  110 (192)
T d1ozha3          37 RYLYTFRARQVMISNGQQTMGVALPWAIGAWLV----NPERKVVSVSGDGGFLQSS--MELETAVRLKANVLHLIWVDNG  110 (192)
T ss_dssp             HTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHH----STTSEEEEEEEHHHHHHHT--THHHHHHHHTCCEEEEEEECSB
T ss_pred             HhcccCCCceeecccccccccccccchhHHHhh----cccccceeecccccccchh--hhHHHHhhhcCceeEEEEcCCC
Confidence            467788888888888899999999999999998    4799999999999975532  338899999999888888776 


Q ss_pred             Ccceeec---------cccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTSA---------ERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~~---------~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |++....         ......+||.+.  |+|+++++|+.  ++++.+++++|+    +.++|+|||+.+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~al~~a~----~~~gp~lIeV~vd~  177 (192)
T d1ozha3         111 YNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVES--AEALEPTLRAAM----DVDGPAVVAIPVDY  177 (192)
T ss_dssp             CHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCS--GGGHHHHHHHHH----HSSSCEEEEEEBCC
T ss_pred             ccccccccccccCccccCcCCCCCHHHHHHHhccccEEeCC--HHHHHHHHHHHH----HcCCcEEEEEEeCC
Confidence            7664321         112345788887  57999999974  556666666554    57899999999864

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.71  E-value=1.3e-17  Score=146.85  Aligned_cols=128  Identities=17%  Similarity=0.159  Sum_probs=98.6

Q ss_pred             ccccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-
Q psy14560          3 QCMIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-   81 (355)
Q Consensus         3 ~~~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-   81 (355)
                      +++++..|+++...+++|+||+++|.|+|++.+     |+++||+++|||++.+.. . .|.+|+++++|+++||.||+ 
T Consensus        40 ~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~-----~~~~vv~i~GDGsf~~~~-~-el~ta~~~~l~i~iiV~NN~g  112 (183)
T d2ji7a3          40 MIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFSG-M-ELETICRYNLPVTVIIMNNGG  112 (183)
T ss_dssp             HHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTTG-G-GHHHHHHTTCCEEEEEEECSB
T ss_pred             HHhccCCCCcEEecCCccccccccchhhhhhcC-----CcceEEEEEcCcchhhch-h-hhhhhhhccccchhhhhhhhh
Confidence            467888898887788899999999999987632     688999999999965542 2 38899999999999999997 


Q ss_pred             Ccceee--------ccccCCCccHhhh--cCCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         82 YGMGTS--------AERSSASTDYYTR--GDYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        82 ~~~~~~--------~~~~~~~~d~~~~--A~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      |.....        .......+||.+.  |+|+++++|+  +++++.+++++|++    .++|+|||+.+.+
T Consensus       113 ~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~idp  178 (183)
T d2ji7a3         113 IYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDP  178 (183)
T ss_dssp             SSCSCCCCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred             hhhhhhccccccccccccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence            222111        0112245788886  5799999997  57788777777664    5889999999864

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.2e-18  Score=162.69  Aligned_cols=73  Identities=52%  Similarity=0.927  Sum_probs=71.3

Q ss_pred             ccccceeecccceecccCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHhhhhhccccccceeccCccccccc
Q psy14560        278 YASEATFETKPFKLHKLSEGPSNKVTVTKQDALLYYRQMQTIRRLETSAGNLYKEKVIRGFCHLYSGQVSSFL  350 (355)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~~~~~~g~~h~~~g~~~~~~  350 (355)
                      |+++|+|++.+|++|+|+++|+..+.||||++|++||+|.++|+||+++.+||++|+|+||+|+++||||+.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~v   73 (361)
T d2ozla1           1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV   73 (361)
T ss_dssp             CCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHH
T ss_pred             CCCCceeecccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999865

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.3e-17  Score=148.33  Aligned_cols=126  Identities=14%  Similarity=0.029  Sum_probs=94.0

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeecc-
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAE-   89 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~-   89 (355)
                      ........|+||+++|.|+|+|+|.|...|+++|||++|||++.+..  .+|.+|+++++|+++||.||+ |++..... 
T Consensus        45 ~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~~--~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~  122 (196)
T d1pvda3          45 YGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTV--QEISTMIRWGLKPYLFVLNNDGYTIEKLIHG  122 (196)
T ss_dssp             EEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHG--GGHHHHHHTTCCCEEEEEESSSCHHHHTTSC
T ss_pred             EEEccCCcCcccccccchhHHHHHHHhcCCCCceeeccCcccccccc--ccccccccccccceEEEEeCCccceeEeecc
Confidence            33445678999999999999999999999999999999999975532  349999999999888887776 76532111 


Q ss_pred             -----ccCCCccHhhhc--CCcce---EEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         90 -----RSSASTDYYTRG--DYIPG---IWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        90 -----~~~~~~d~~~~A--~G~~~---~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                           .....+||.++|  +|+++   .+|+  ++.++.++++++.  ..+.++|+|||+.+.+
T Consensus       123 ~~~~~~~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~--~~~~~~~~lIeV~i~~  182 (196)
T d1pvda3         123 PKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKS--FNDNSKIRMIEIMLPV  182 (196)
T ss_dssp             TTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTT--TTSCSSEEEEEEECCT
T ss_pred             CccccccCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHH--HhCCCCcEEEEEECCC
Confidence                 122357888864  67554   5665  6778777776543  2356789999998863

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=99.68  E-value=1.4e-16  Score=152.78  Aligned_cols=136  Identities=19%  Similarity=0.134  Sum_probs=105.1

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhc----------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYK----------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~----------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||.|++.|+|+|+|.|+.          .-+..|+|++|||.+++|..|||+.+|+.++|+ +|+|+.||.
T Consensus       107 pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~  186 (336)
T d1r9ja2         107 PGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNY  186 (336)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEeccc
Confidence            456667899999999999999998752          225779999999999999999999999999998 888888998


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceEEEeCC--CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGIWVDGM--DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSDP  152 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~--D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D~  152 (355)
                      ..+....... ...++.++  |+||.++.|||+  |...+..++..+.   ...++|++|.+.|...+|.+..+.
T Consensus       187 ~~idg~~~~~-~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~---~~~~kP~~Ii~kTiiG~G~~~e~~  257 (336)
T d1r9ja2         187 ISIDGSTSLS-FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAK---ATKGKPKMIVQTTTIGFGSSKQGT  257 (336)
T ss_dssp             BCSSSBGGGT-CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHH---HCCSSCEEEEEECCTTTTSTTTTS
T ss_pred             cccccccccc-chhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhh---hccCCCccceEEEEEeecccccCC
Confidence            8776544332 34566665  799999999874  4444443333322   235689999999999999775443

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.68  E-value=2.2e-17  Score=146.98  Aligned_cols=127  Identities=13%  Similarity=0.033  Sum_probs=91.7

Q ss_pred             ccccCCCCCccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCC-Cc
Q psy14560          5 MIVINPSPKNFYGGNGIVGAQVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YG   83 (355)
Q Consensus         5 ~~~~~p~~~~~~~~~g~lG~~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~   83 (355)
                      +.+..++.....++.|+||+++|.|+|+++|    .|+++|||++|||++.+.  ..+|.+|+++++|+++||.||+ |+
T Consensus        38 ~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la----~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~  111 (196)
T d1ovma3          38 LRLPADVNFIVQPLWGSIGYTLAAAFGAQTA----CPNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYT  111 (196)
T ss_dssp             CCCCSSCEEECCTTTCCTTHHHHHHHHHHHH----CTTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCH
T ss_pred             hccCCCCeEEeCCCCccccccchhhHHHHHh----hhccceecccccccceee--cccccccccccccceEEEEecCccc
Confidence            3444554555667789999999999999998    578999999999997664  2459999999999888888886 77


Q ss_pred             ceeecc------ccCCCccHhhh--cCC----cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeee
Q psy14560         84 MGTSAE------RSSASTDYYTR--GDY----IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYR  143 (355)
Q Consensus        84 ~~~~~~------~~~~~~d~~~~--A~G----~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R  143 (355)
                      +.....      .....+|+.+.  ++|    .++++|+  +++++.+++    +++++.++|+|||+.+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al----~~a~~~~gp~lIev~~~~  177 (196)
T d1ovma3         112 VERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVL----EKVAHHERLSLIEVMLPK  177 (196)
T ss_dssp             HHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHH----HHHTTCSSEEEEEEECCT
T ss_pred             cchhhhccccccccccccccchhHHhcCccccceeEEEe--cHHHHHHHH----HHHHHCCCcEEEEEEeCh
Confidence            642111      11223566664  344    4677886  566665555    455568899999998853

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.5e-18  Score=165.41  Aligned_cols=110  Identities=12%  Similarity=0.165  Sum_probs=96.6

Q ss_pred             cee--cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      .||  -.+|.|++++.+   +|   .+....+||+++++...+|++.||++++||+|++++++|+++..+|+|++|+.+|
T Consensus        55 ~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g  134 (395)
T d2bfda1          55 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD  134 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccC
Confidence            477  456999998755   34   2344668999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhccc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSISGR  276 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~~~  276 (355)
                      +++            |||||||+++  .||++.++|||+|+|+|++-..+++
T Consensus       135 ~~~------------Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k  174 (395)
T d2bfda1         135 LGK------------GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK  174 (395)
T ss_dssp             TTT------------TCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred             ccc------------cccccccccccccccccccccccccccHHHHHHHHhh
Confidence            998            9999999986  7999999999999999998755543

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.1e-17  Score=162.27  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=96.1

Q ss_pred             cee--cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccc-cccccccccccceeecCCCHHHHHHHHhcccc
Q psy14560        155 SFR--DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQ-DSIISAYRVHGWTYLMGVSVFGVLSELTGRRT  225 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~-D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~  225 (355)
                      +||  -.+|.|++++.+   +|   .+....+||+++++...+++++ ||++++||+|++++++|+++.++|+|++|+.+
T Consensus        36 ~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~  115 (362)
T d1umda_          36 LYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKA  115 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHHHHHcCCCCCeEEeccccHHHHHHHHhhHHHHHHHHhcccC
Confidence            366  456899998764   34   4567889999999999999986 99999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560        226 GCAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       226 g~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                      |+++            |||||||+.+  .||++.++|||+|+|+|+.-..+
T Consensus       116 g~~~------------Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a  154 (362)
T d1umda_         116 DPNK------------GRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS  154 (362)
T ss_dssp             CTTT------------TCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHH
T ss_pred             CCcc------------cccccccccccccCcccccccccccchHHHHHHHh
Confidence            9987            9999999987  79999999999999999986444

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=8.8e-18  Score=164.89  Aligned_cols=108  Identities=16%  Similarity=0.207  Sum_probs=96.3

Q ss_pred             cee--cchhHHHHHHHH---hh---hhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---SE---LATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~G---l~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      .||  -.+|.|++++.+   +|   .+....+||+++++...+|+++||+|++||+|++.+++|+++.++|++++|+.+|
T Consensus        79 ~yr~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g  158 (407)
T d1qs0a_          79 GMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERD  158 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccCCCCChHHHHHHHHHhCCCCCEEEecccCHHHHHHHHhhHHHHHHHHhhccCC
Confidence            477  456999998765   44   3567888999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCccccCCc--ccccccccccCCchhhhhhhhhc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYA--KNFYGGNGIVGAQTLKSLLKSIS  274 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~--~~~~~~~~~vg~~~~~a~~~~~~  274 (355)
                      +++            |||||||+..  .||++.++|||+|+|+|+.--++
T Consensus       159 ~~~------------Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a  196 (407)
T d1qs0a_         159 PLK------------GRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMA  196 (407)
T ss_dssp             TTT------------TCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHH
T ss_pred             CCC------------CCCccccccccccceeccccccccccchhhhhHHH
Confidence            987            9999999986  79999999999999999965433

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=4.2e-16  Score=149.42  Aligned_cols=135  Identities=18%  Similarity=0.188  Sum_probs=105.8

Q ss_pred             CccccCCcccccchHHHHHHHHHHHhc----------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeCC
Q psy14560         13 KNFYGGNGIVGAQVPLGTGIAFAAQYK----------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENNG   81 (355)
Q Consensus        13 ~~~~~~~g~lG~~lp~AiGaA~A~k~~----------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN~   81 (355)
                      .++..++|+||.++|.|+|+|+|.|+.          ..+..|+|++|||.+++|..|||+.+|+.++|. +|+|+.+|+
T Consensus       107 pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~  186 (335)
T d1gpua1         107 PGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK  186 (335)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEeccc
Confidence            466678999999999999999998852          347889999999999999999999999999997 999999999


Q ss_pred             CcceeeccccCCCccHhhh--cCCcceEEEeCCC--HHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCCCC
Q psy14560         82 YGMGTSAERSSASTDYYTR--GDYIPGIWVDGMD--VLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSMSD  151 (355)
Q Consensus        82 ~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~D--~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~~D  151 (355)
                      ..+..+...... .++.++  ++||.++.|||++  ...+..++..+.   ...++|++|.+.|...+|....+
T Consensus       187 ~~~dg~~~~~~~-~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~---~~~~KPt~Iia~TikGkGs~~e~  256 (335)
T d1gpua1         187 ITIDGATSISFD-EDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAK---LSKDKPTLIKMTTTIGYGSLHAG  256 (335)
T ss_dssp             EETTEEGGGTCC-CCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHH---HCTTSCEEEEEECCTTTTSTTTT
T ss_pred             cccccccccccc-CCHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhh---cccCCCcceEEeeccCCcCcccC
Confidence            888766554433 566665  7899999997654  444433333322   23568999999999888854443

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.64  E-value=1.3e-15  Score=146.10  Aligned_cols=134  Identities=23%  Similarity=0.271  Sum_probs=106.7

Q ss_pred             CCccccCCcccccchHHHHHHHHHHHhc----------CCCCeEEEEeCcccccccHHHHHHHHHHHcCCC-EEEEEEeC
Q psy14560         12 PKNFYGGNGIVGAQVPLGTGIAFAAQYK----------GTGGVCFALYGDGASNQGQNFEAYNIAKLWGIP-CIYVCENN   80 (355)
Q Consensus        12 ~~~~~~~~g~lG~~lp~AiGaA~A~k~~----------~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LP-vi~Vv~NN   80 (355)
                      ..++..++|+||.+++.|+|+|+|.|+.          .-+..|+|++|||.+++|..|||+.+|+.++|. +++|+.+|
T Consensus       110 ~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N  189 (338)
T d1itza1         110 TPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDN  189 (338)
T ss_dssp             CTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             CCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhh
Confidence            3466778999999999999999998753          236789999999999999999999999999997 99999999


Q ss_pred             CCcceeeccccCCCccHhhh--cCCcceEEEeCC--CHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560         81 GYGMGTSAERSSASTDYYTR--GDYIPGIWVDGM--DVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~~~--A~G~~~~~VdG~--D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      ++.+....... ...++.++  ++||.++.|+++  |.+++..++..|.+   ..++|++|.+.|...+|-+.
T Consensus       190 ~~~~dg~~~~~-~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~---~~~kPt~Iia~TikGkG~~~  258 (338)
T d1itza1         190 HISIDGDTEIA-FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPN  258 (338)
T ss_dssp             SEETTEEGGGT-CCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTT
T ss_pred             ccccccccccc-cCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHH---ccCCCceeEeecCcccCcCc
Confidence            98877655433 34567664  789999988653  56666555554432   35789999999998888653

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=3.8e-12  Score=124.75  Aligned_cols=131  Identities=18%  Similarity=0.050  Sum_probs=96.2

Q ss_pred             ccCCcccccchHHHHHHHHHHHh-------cCCCCeEEEEeCcccccccHHHHHHHHHHHcCC-CEEEEEEeCCCcceee
Q psy14560         16 YGGNGIVGAQVPLGTGIAFAAQY-------KGTGGVCFALYGDGASNQGQNFEAYNIAKLWGI-PCIYVCENNGYGMGTS   87 (355)
Q Consensus        16 ~~~~g~lG~~lp~AiGaA~A~k~-------~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~L-Pvi~Vv~NN~~~~~~~   87 (355)
                      ..+.+.+|.+.+.+++.+.+.+.       ...+..|+|++|||++++|..|||+++|+.++| ++|+|+.+|.++++.+
T Consensus       133 ~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~  212 (415)
T d2ieaa2         133 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGP  212 (415)
T ss_dssp             CCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSB
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccC
Confidence            33445666666666665554332       245788999999999999999999999999999 5999999999988766


Q ss_pred             ccccCC-CccHhhh--cCCcceEEE-------------------------------------------------------
Q psy14560         88 AERSSA-STDYYTR--GDYIPGIWV-------------------------------------------------------  109 (355)
Q Consensus        88 ~~~~~~-~~d~~~~--A~G~~~~~V-------------------------------------------------------  109 (355)
                      ...... ..++.++  ++||.++.|                                                       
T Consensus       213 ~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l  292 (415)
T d2ieaa2         213 VTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAAL  292 (415)
T ss_dssp             SCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTT
T ss_pred             hhccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHH
Confidence            543222 1333332  567766554                                                       


Q ss_pred             --------------eCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        110 --------------DGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       110 --------------dG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                                    ||+|+.++++++++|.+.   .++|++|.+.|...+|...
T Consensus       293 ~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~~---~d~P~vI~a~TiKGkGlp~  343 (415)
T d2ieaa2         293 VADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGD  343 (415)
T ss_dssp             STTSCHHHHTTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTT
T ss_pred             HhhhhhhhhhhhhhccCchhhhHHHHHHHHhc---CCCceEEEEecccccCCCc
Confidence                          889999998888887642   4679999999987776543

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.27  E-value=5.3e-13  Score=128.92  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=86.4

Q ss_pred             cee--cchhHHHHHHHH---h---hhhhhhhHHHHHHhhHHHhhccccccccccccccceeecCCCHHHHHHHHhccccc
Q psy14560        155 SFR--DPITSFKEKMLN---S---ELATVDELKEACAVGMRAVMREQDSIISAYRVHGWTYLMGVSVFGVLSELTGRRTG  226 (355)
Q Consensus       155 ~YR--DpIr~fee~Li~---~---Gl~t~~e~qEa~qvg~~~al~~~D~v~~~yR~~~~~~~~g~~~~~~~~~~~g~~~g  226 (355)
                      .||  -.+|.|++++.+   +   |.+....+||+++++...+|+++||++++||+|++.+++|+++..++++++|+..|
T Consensus        46 ~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g  125 (365)
T d1w85a_          46 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHG  125 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccCCCChHHHHHHHHHhCCCcCEeeecccchheeeecCCCHHHHHHhhCCCCCc
Confidence            466  556899998665   3   45677889999999999999999999999999999999999999999999998877


Q ss_pred             CCCCCCCCCcccccCCCCccccCCcccccccccccCCchhhhhhhhhccc
Q psy14560        227 CAKGKGPISWECCAKGKGGSMHMYAKNFYGGNGIVGAQTLKSLLKSISGR  276 (355)
Q Consensus       227 ~~~~~~~~~w~~~~~G~gg~~h~~~~~~~~~~~~vg~~~~~a~~~~~~~~  276 (355)
                      ++.            |++       .|+++.++|||+|+|+|+.--.|++
T Consensus       126 ~~~------------~~~-------~~~~~~~~ivG~~~p~AvG~A~a~k  156 (365)
T d1w85a_         126 NQI------------PEG-------VNVLPPQIIIGAQYIQAAGVALGLK  156 (365)
T ss_dssp             GCC------------CTT-------CCBCCCCCSTTHHHHHHHHHHHHHH
T ss_pred             cCC------------CCC-------ceeeccccccCccccchhhHHhhhh
Confidence            654            332       4678999999999999998754443

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR PP module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI
species: Desulfovibrio africanus [TaxId: 873]

Probab=97.51  E-value=0.00032  Score=67.78  Aligned_cols=97  Identities=14%  Similarity=0.036  Sum_probs=68.1

Q ss_pred             CCCCeEEEEeCccc-ccccHHHHHHHHHHHcCCCEEEEEEeCC-Ccceeec-------c---------ccCCCccHhhh-
Q psy14560         40 GTGGVCFALYGDGA-SNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSA-------E---------RSSASTDYYTR-  100 (355)
Q Consensus        40 ~~~~~vv~~~GDGa-~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~-------~---------~~~~~~d~~~~-  100 (355)
                      ..+..||++.|||. +..|.  .+|.-|...+.+|++||.||. |+++..+       .         ......|+... 
T Consensus       167 ~~k~~V~~~gGDG~~~dIG~--~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia  244 (447)
T d2c42a2         167 YTKKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMV  244 (447)
T ss_dssp             TSCCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHH
T ss_pred             ccCCcEEEEecCccHhhcCh--HHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHHHHH
Confidence            35678999999999 45553  347788899999999999998 7663211       1         01112355544 


Q ss_pred             -cCCcceE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        101 -GDYIPGI-WVD-GMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       101 -A~G~~~~-~Vd-G~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                       ++|.+++ ++. +.++..+.+++++|++    .+||.+|++...
T Consensus       245 ~a~g~~YVA~~s~~~~~~~l~kaikeA~~----~~GpS~I~~~sP  285 (447)
T d2c42a2         245 MTYGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYAT  285 (447)
T ss_dssp             HTTSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECC
T ss_pred             HHCCCceEEEEeCCCCHHHHHHHHHHHHh----CCCCeEEEeecC
Confidence             5688766 664 6788888887777664    689999999753

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=95.09  E-value=0.063  Score=45.07  Aligned_cols=94  Identities=17%  Similarity=0.051  Sum_probs=57.1

Q ss_pred             CCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CCcceEEEeCCCHHHH
Q psy14560         42 GGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DYIPGIWVDGMDVLAV  117 (355)
Q Consensus        42 ~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G~~~~~VdG~D~~~v  117 (355)
                      +++.+|++  |=|.++.   ..+|..|...++|+|+|.-+...........+  ..|.....  .--...+|+  +++++
T Consensus        67 g~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q--~~d~~~~~~~itk~~~~v~--~~~~~  139 (184)
T d2djia2          67 GNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAVYNRRVA--YAEQL  139 (184)
T ss_dssp             CCCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEESCGGGTTTTCTT--CCCCHHHHHTTCSEEEECC--SGGGH
T ss_pred             cCcceeeccccccccch---hHhHHHHHHhCccceeecccchhhHhhcCccc--ccccccchhhhcceeeccc--cchhh
Confidence            44555544  5555543   34577888899999999976542111000001  11222211  122245665  57788


Q ss_pred             HHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        118 REASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       118 ~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .+.+++|++.+...+||+.|++..+
T Consensus       140 ~~~~~~A~~~a~~~rGPv~i~iP~D  164 (184)
T d2djia2         140 PKLVDEAARMAIAKRGVAVLEVPGD  164 (184)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEEETT
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCch
Confidence            8999999999988899999999754

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.65  E-value=0.14  Score=42.80  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe-CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcc---eeeccccCCCc---cHhhh
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY-GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGM---GTSAERSSAST---DYYTR  100 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~-GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~---~~~~~~~~~~~---d~~~~  100 (355)
                      +|.|.+...     ++.++|++ |=|..   ....+|..|...++|+|+|.-+.....   ...........   +..+.
T Consensus        55 mA~gyar~t-----g~~~v~~t~GpG~~---N~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (186)
T d1zpda2          55 SAEGYARAK-----GAAAAVVTYSVGAL---SAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEM  126 (186)
T ss_dssp             HHHHHHHHH-----SCEEEEECTTTTHH---HHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHH
T ss_pred             hhhhhhhcc-----ccceeEeeccccch---hhhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhc
Confidence            455555442     34455544 43333   234568888899999999997654221   11111111111   22222


Q ss_pred             c--CCcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        101 G--DYIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       101 A--~G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .  .--...+++  +++++.+.+++|++.+..+++|+.|++..+
T Consensus       127 ~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP~D  168 (186)
T d1zpda2         127 AKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN  168 (186)
T ss_dssp             HGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cCCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence            1  233456665  566788889999988888889999998753

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=94.19  E-value=0.11  Score=43.14  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             CCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCC-cceeeccccCCCccHhhhcCCc--ceEEEeCCCHHH
Q psy14560         42 GGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGY-GMGTSAERSSASTDYYTRGDYI--PGIWVDGMDVLA  116 (355)
Q Consensus        42 ~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~A~G~--~~~~VdG~D~~~  116 (355)
                      +++.+|++  |=|.++.   ..+|..|-..+.|+|+|.-+..- ......   +...|.......+  ...+|.  ++++
T Consensus        66 gk~gv~~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~---~Q~~d~~~~~~~itk~~~~v~--~~~~  137 (174)
T d2ez9a2          66 GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDT---FQEMNENPIYADVADYNVTAV--NAAT  137 (174)
T ss_dssp             SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCC---TTCCCCHHHHTTTCSEEEECC--CSTT
T ss_pred             CceeEEeecccccccch---hhhHHHHHhcCccceeeeccccccccCccc---cccchhhhhhccccccccccc--cHHH
Confidence            45555554  5555443   24577788899999999876541 111110   0011222222221  234554  4556


Q ss_pred             HHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        117 VREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       117 v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      +.+.+++|++.+...+||+.|++..+
T Consensus       138 ~~~~i~~A~~~A~~~pGPv~l~iP~D  163 (174)
T d2ez9a2         138 LPHVIDEAIRRAYAHQGVAVVQIPVD  163 (174)
T ss_dssp             HHHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCcc
Confidence            77888888888877789999999754

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.91  E-value=0.15  Score=42.44  Aligned_cols=102  Identities=20%  Similarity=0.124  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhc--CC
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRG--DY  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A--~G  103 (355)
                      +|-|.+...     +++.+|++  |=|.++.   ..+|..|-..+.|+|+|..+...........+  ..|.....  .-
T Consensus        57 ~A~gyar~t-----g~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~q--~~d~~~~~~~~t  126 (181)
T d1ozha2          57 MAAAVGRIT-----GKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVT  126 (181)
T ss_dssp             HHHHHHHHH-----SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGC
T ss_pred             HHHHHHHhc-----CCccceeeccchhhhhh---hhhHHHHhhcCCceeeeecccchhhccccccc--cccccccccccc
Confidence            455555442     34555555  4444443   34577888899999999987653221111111  12333321  22


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEe
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVT  141 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t  141 (355)
                      -...+|.  +++++.+.+++|++.++.++ ||+.|++..
T Consensus       127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~  163 (181)
T d1ozha2         127 KYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQ  163 (181)
T ss_dssp             SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             hheeccC--chhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence            2345664  57788899999999998865 799999975

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=0.083  Score=43.88  Aligned_cols=108  Identities=9%  Similarity=0.052  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcce---eeccccCCCcc---Hhh
Q psy14560         26 VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMG---TSAERSSASTD---YYT   99 (355)
Q Consensus        26 lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~---~~~~~~~~~~d---~~~   99 (355)
                      .-+|.|.+.+.   + ...+++..|=|.++   ...+|..|...++|+|+|.-++.....   ..........+   +.+
T Consensus        54 ~~~A~gyar~t---~-~~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (180)
T d1pvda2          54 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHR  126 (180)
T ss_dssp             HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHH
T ss_pred             hHHHHHHhhcc---C-Cceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHH
Confidence            33456655542   2 22334444555443   345677888899999999976543221   11111111112   222


Q ss_pred             hcCC-cc-eEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEee
Q psy14560        100 RGDY-IP-GIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTY  142 (355)
Q Consensus       100 ~A~G-~~-~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~  142 (355)
                      .... .+ ..++.  +++++.+.+++|++.+...+||+.|++..+
T Consensus       127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP~d  169 (180)
T d1pvda2         127 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPAN  169 (180)
T ss_dssp             HHGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEETT
T ss_pred             HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            2221 12 23443  455666777888877777789999999753

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.52  E-value=0.23  Score=40.93  Aligned_cols=104  Identities=21%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCCc
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDYI  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G~  104 (355)
                      -+|.|.+...     +++.+|++  |=|..+.   .-++..|...++|+|+|+-+..........  ....|.......+
T Consensus        56 ~~A~gyar~t-----g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~l~~~~  125 (175)
T d1t9ba2          56 HMAEGYARAS-----GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTDA--FQEADVVGISRSC  125 (175)
T ss_dssp             HHHHHHHHHH-----SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSCC--TTCCCHHHHTGGG
T ss_pred             HHHHHHHHHh-----CCceEEEEecCcHHHHH---HHHHHHHHHcCCCEEEEecCCChhhcCCCc--cccccHhHhcccc
Confidence            3455555542     44555554  4444433   345778888999999999865422111101  1112333332221


Q ss_pred             --ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        105 --PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       105 --~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                        ...+++  ++.++.+.+++|++.++.. .||+.|++..+
T Consensus       126 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~D  164 (175)
T d1t9ba2         126 TKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPKD  164 (175)
T ss_dssp             SSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             eeeeEecC--CHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence              234554  5677888999999999875 57999998753

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=92.97  E-value=0.14  Score=42.70  Aligned_cols=105  Identities=13%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCc--ccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGD--GASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--  102 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GD--Ga~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--  102 (355)
                      -+|.|.+.+.     +++.+|++--  |..+   ...+|..|-..+.|+|+|.-+-.-.............|......  
T Consensus        55 ~~A~gyar~t-----g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~  126 (188)
T d2ji7a2          55 YAASIAGYIE-----GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPH  126 (188)
T ss_dssp             HHHHHHHHHH-----SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGG
T ss_pred             hHHHHHHhhh-----cccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCc
Confidence            3455555542     4455555533  3332   33567788889999999986533111000000111123333221  


Q ss_pred             CcceEEEeCCCHHHHHHHHHHHHHHHHcCC-CCeEEEEEe
Q psy14560        103 YIPGIWVDGMDVLAVREASKFAVNYASSGK-GPLVLEVVT  141 (355)
Q Consensus       103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~-gP~lIev~t  141 (355)
                      --...+|.  +++++.+++++|++.+.+++ ||+.|++..
T Consensus       127 tk~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~  164 (188)
T d2ji7a2         127 CKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA  164 (188)
T ss_dssp             SSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             chhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcCh
Confidence            12345664  56788889999999888865 799999864

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=92.53  E-value=0.37  Score=40.37  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcC--C
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGD--Y  103 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~--G  103 (355)
                      +|-|.+.+.     +++.+|++  |=|.++.   ..+|..|-.-+.|+|++.-+.........  .+...|......  -
T Consensus        65 mAdgyar~t-----g~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~--~~q~~d~~~~~~~~t  134 (195)
T d1ybha2          65 AAEGYARSS-----GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMIGTD--AFQETPIVEVTRSIT  134 (195)
T ss_dssp             HHHHHHHHH-----SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTT--CTTCCCHHHHHGGGS
T ss_pred             HHHHHHHHH-----CCCeEEEEecChHHHHH---HHHHHHHHHcCCCEEEEecCCcHHHhccC--cccccchhhhhcccc
Confidence            455555543     34444444  5555443   23577888899999999886542211100  111122222211  1


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      -...+|.  +++++.+++++|++.++.+ .||+.|++..+
T Consensus       135 k~~~~v~--~~~~~~~~~~~A~~~a~~~r~GPV~l~iP~D  172 (195)
T d1ybha2         135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPKD  172 (195)
T ss_dssp             SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             cchhhcc--hHhhcchHHHHHHHHHhcCCCCcEEEECChH
Confidence            1234554  5778889999999999886 57999999753

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=92.41  E-value=0.37  Score=40.03  Aligned_cols=103  Identities=15%  Similarity=0.060  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEe--CcccccccHHHHHHHHHHHcCCCEEEEEEeCC-CcceeeccccCCCccHhhhcC--
Q psy14560         28 LGTGIAFAAQYKGTGGVCFALY--GDGASNQGQNFEAYNIAKLWGIPCIYVCENNG-YGMGTSAERSSASTDYYTRGD--  102 (355)
Q Consensus        28 ~AiGaA~A~k~~~~~~~vv~~~--GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~-~~~~~~~~~~~~~~d~~~~A~--  102 (355)
                      +|-|.+...     +++.+|++  |=|.++.   ..+|..|-..+.|+|+|.-+.. ......  ......|......  
T Consensus        52 ~A~gyar~t-----g~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~~q~~d~~~~~~~~  121 (186)
T d2ihta2          52 AADVLARIT-----GRPQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIFPN--DTHQCLDSVAIVAPM  121 (186)
T ss_dssp             HHHHHHHHH-----CSCEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCCTT--TSTTCCCHHHHHGGG
T ss_pred             HHHHHhhcc-----CCcceeeccccccccch---hhhhhHHHHhhccceeeeccCcchhcccc--ccccccccccccCCc
Confidence            455555442     34444444  5555432   3457778888999999987543 222111  1111234333321  


Q ss_pred             CcceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        103 YIPGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       103 G~~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      --...+|.  +++++.+.+++|++.++.+ .||+.|++..+
T Consensus       122 tk~~~~v~--~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D  160 (186)
T d2ihta2         122 SKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD  160 (186)
T ss_dssp             SSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred             eeeccccC--CchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence            22345664  6778889999999998875 47999999754

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=91.20  E-value=0.42  Score=39.52  Aligned_cols=107  Identities=19%  Similarity=0.041  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhhcCC--c
Q psy14560         27 PLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTRGDY--I  104 (355)
Q Consensus        27 p~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~A~G--~  104 (355)
                      -+|.|.+...   +.-..+++..|=|.++.   ..+|..|...+.|+|+|.-+-......... .+...|.......  -
T Consensus        51 ~mA~gyar~t---gk~~v~~~~~GpG~~n~---~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~~-~~q~~D~~~~~~~~tK  123 (180)
T d1q6za2          51 GIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEA-LLTNVDAANLPRPLVK  123 (180)
T ss_dssp             HHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTC-TTCCTTGGGSSTTSCS
T ss_pred             HHHHHHhhhc---cCcceEEeccccccccc---cceeHhhhhcccceeeeccccccccccccc-cchhhheeeccccccc
Confidence            3555665542   22333444445555433   245788889999999998764321100000 0111233322211  1


Q ss_pred             ceEEEeCCCHHHHHHHHHHHHHHHHcC-CCCeEEEEEee
Q psy14560        105 PGIWVDGMDVLAVREASKFAVNYASSG-KGPLVLEVVTY  142 (355)
Q Consensus       105 ~~~~VdG~D~~~v~~a~~~Al~~ar~~-~gP~lIev~t~  142 (355)
                      ...+|.  +++++.+.+++|++.++.+ .||+.|++..+
T Consensus       124 ~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D  160 (180)
T d1q6za2         124 WSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD  160 (180)
T ss_dssp             CEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred             ccccCC--CHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence            244554  5778889999999988876 57999999865

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=89.75  E-value=0.69  Score=40.46  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=68.1

Q ss_pred             chHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHh-hhcCC
Q psy14560         25 QVPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYY-TRGDY  103 (355)
Q Consensus        25 ~lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~-~~A~G  103 (355)
                      .+..++|++++      +..+.+.+.-.++..  ..|.|..|.-.++|+++++.+-...-+ +...+....|.. .+-.|
T Consensus        66 A~~~~~Ga~~a------G~r~~t~ts~~Gl~~--m~e~l~~a~~~~~P~V~~v~~r~~~~~-~~~~~~~q~d~~~~~~~g  136 (257)
T d2c42a1          66 AAGAVHGALAA------GALTTTFTASQGLLL--MIPNMYKISGELLPGVFHVTARAIAAH-ALSIFGDHQDIYAARQTG  136 (257)
T ss_dssp             HHHHHHHHHHT------TCCEEEEECHHHHHH--HHHHHHHHHHTTCCCEEEEEECCCCSS-SBCCSCCSHHHHTTTTSS
T ss_pred             hHHHHHHHHhc------CCCeEEEecchHHHH--HHHHHHHHHhcCCceEEEEEecCCCCC-CCccccchHHHHHHHhcc
Confidence            35567777765      344555554333332  457788999999998777776543221 111111112221 12237


Q ss_pred             cceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEEEEeeeeCCCCC
Q psy14560        104 IPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLEVVTYRYSGHSM  149 (355)
Q Consensus       104 ~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIev~t~R~~GHs~  149 (355)
                      ++.+..  .++.+..+....|.+.+.+.+-|+++-....+ .+|..
T Consensus       137 ~~~l~~--~s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~-~sh~~  179 (257)
T d2c42a1         137 FAMLAS--SSVQEAHDMALVAHLAAIESNVPFMHFFDGFR-TSHEI  179 (257)
T ss_dssp             CEEEEC--CSHHHHHHHHHHHHHHHHHHCCCEEEEEETTT-TTTCE
T ss_pred             eEEEec--CCHHHHHHHHHHHHHHHHHhCCCEEEEeccch-hcCCc
Confidence            766554  47888888888888888778889998776544 45654

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=85.28  E-value=2.9  Score=34.70  Aligned_cols=108  Identities=17%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             Ccccccc-hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccH
Q psy14560         19 NGIVGAQ-VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDY   97 (355)
Q Consensus        19 ~g~lG~~-lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~   97 (355)
                      .|+-... +.+|.|.++.    +.-.++++++.  .+. ....+.+..++..++|+++|....++..+.......+..|+
T Consensus        69 ~GIaEqnm~~iAaGla~~----~g~~p~~~t~~--~F~-~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieDl  141 (190)
T d1r9ja1          69 FGVREHAMCAILNGLDAH----DGIIPFGGTFL--NFI-GYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV  141 (190)
T ss_dssp             CCSCHHHHHHHHHHHHHH----SSCEEEEEEEG--GGG-GGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred             eccchhhHHHHHHHHHHc----CCcceEEecch--hhh-ccchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHHH
Confidence            3566654 5666676654    22344444432  232 23455577888899999999888887665444444455666


Q ss_pred             hhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560         98 YTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus        98 ~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      +-. +. ++.+++-  .|..++..+++.|++   ..++|+.|-
T Consensus       142 a~~R~iPn~~V~~P--aD~~E~~~al~~a~~---~~~gP~yiR  179 (190)
T d1r9ja1         142 AALRAMPNLQVIRP--SDQTETSGAWAVALS---SIHTPTVLC  179 (190)
T ss_dssp             HHHHHSTTCEEECC--SSHHHHHHHHHHHHH---CTTCCEEEE
T ss_pred             HHHHhcCCEEEEec--CCHHHHHHHHHHHHH---cCCCCEEEE
Confidence            653 33 6655542  367777777666653   467899874

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=2  Score=35.87  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=61.8

Q ss_pred             cccccc-hHHHHHHHHHHHhcCCCCeEEEEeCcccccccHHHHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHh
Q psy14560         20 GIVGAQ-VPLGTGIAFAAQYKGTGGVCFALYGDGASNQGQNFEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYY   98 (355)
Q Consensus        20 g~lG~~-lp~AiGaA~A~k~~~~~~~vv~~~GDGa~~~G~~~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~   98 (355)
                      |+-... +++|.|.|..    +.-.+++.++   ++...-..+.+..++..+.++++|+...+.+.+.......+.+|++
T Consensus        76 GIaEq~M~~iAaGlA~~----g~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iEDia  148 (195)
T d2r8oa1          76 GVREFGMTAIANGISLH----GGFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA  148 (195)
T ss_dssp             CSCHHHHHHHHHHHHHH----SSCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             eeehhhHHHHHHHHHhh----CCceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhhHHHHHHH
Confidence            454443 3445666553    2222333333   4333345667888899999988888877766544434444556666


Q ss_pred             hh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEEE
Q psy14560         99 TR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVLE  138 (355)
Q Consensus        99 ~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lIe  138 (355)
                      -. +. ++..++-  .|..++..+++.|++   ..++|+.|-
T Consensus       149 ~lR~iPn~~v~~P--~D~~E~~~a~~~a~~---~~~gP~ylR  185 (195)
T d2r8oa1         149 SLRVTPNMSTWRP--CDQVESAVAWKYGVE---RQDGPTALI  185 (195)
T ss_dssp             HHHTSTTCEEECC--SSHHHHHHHHHHHHH---CSSSCEEEE
T ss_pred             HHHhhCCcEEEec--CCHHHHHHHHHHHHH---cCCCCEEEE
Confidence            53 33 5555532  367777666666553   357898873

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.08  E-value=1.5  Score=36.66  Aligned_cols=74  Identities=20%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             HHHHHHHHHcCCCEEEEEEeCCCcceeeccccCCCccHhhh-cC-CcceEEEeCCCHHHHHHHHHHHHHHHHcCCCCeEE
Q psy14560         60 FEAYNIAKLWGIPCIYVCENNGYGMGTSAERSSASTDYYTR-GD-YIPGIWVDGMDVLAVREASKFAVNYASSGKGPLVL  137 (355)
Q Consensus        60 ~EaL~~Aa~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~-A~-G~~~~~VdG~D~~~v~~a~~~Al~~ar~~~gP~lI  137 (355)
                      ...+..++..++|+++|...-+++.+.......+..|++-. +. ++.+++=  .|..++..+++.|++   ..++|+.|
T Consensus       113 ~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~v~~P--aD~~e~~~a~~~a~~---~~~gP~yi  187 (197)
T d1gpua2         113 AGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRP--ADGNEVSAAYKNSLE---SKHTPSII  187 (197)
T ss_dssp             HHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECC--CSHHHHHHHHHHHHH---CSSCCEEE
T ss_pred             HHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHHHhcCCCcEEEec--CCHHHHHHHHHHHHH---cCCCCEEE
Confidence            34467778889999999988887665444444455566543 32 4444432  366667666666554   35689988


Q ss_pred             E
Q psy14560        138 E  138 (355)
Q Consensus       138 e  138 (355)
                      -
T Consensus       188 R  188 (197)
T d1gpua2         188 A  188 (197)
T ss_dssp             E
T ss_pred             E
Confidence            4