Psyllid ID: psy145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MSDRMSNQMKSVLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFHRAGSSGFHE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEccccccccccEEEEEEcccccccEEEEEcccccccEEccccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccccccccccEEccccccHHHHHHHHHccccccccHHHcccccccccccEEEEEEEEEccccccccccEEEEEEccccccccEEEEEcccccEEEcccEEEEEEEccccccEEEEEEEccccccccccccHHHccccccccHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSDRMSNQMKSVLDKirpewesnpqpsayripwisnLSQFNAIIGLGTVTIGDItllvpflfgdtteitaigrivcdtsdgklNAASVLlegdevtsggrsislklpetgvavfpgqivaargsnpsrnqFIATkiysdaslplsetrpaldqnteMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADfhragssgfhe
Flexible Loop (DISEMBL)
MSDRMSNQMKSVLDkirpewesnpqpSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAargsnpsrnQFIATKiysdaslplsetrpaldqnteMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFHRAGSSGFHE
Low Complexity Region (SEG)
MSDRMSNQMKSVLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFHRAGSSGFHE
Disordered region (IsUnstruct)
***************************AYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAAR*******QFIATKIYSD***************TEMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFH*********
Disordered Region (DISOPRED)
**********SVLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASL*******************VSYEKGLPLADYLVNVFEKSYNSAFITTVADFH*********
Disordered Region (DISEMBL)
***********VLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFHR********
Disordered Region (DISPRO)
***RMSNQMKSVLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFHR********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDRMSNQMKSVLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVADFHRAGSSGFHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q14181	598	DNA polymerase alpha subu	yes	N/A	0.443	0.150	0.402	7e-10
Q58D13	604	DNA polymerase alpha subu	yes	N/A	0.453	0.152	0.382	1e-09
P33611	600	DNA polymerase alpha subu	yes	N/A	0.453	0.153	0.382	3e-09
O89043	600	DNA polymerase alpha subu	yes	N/A	0.443	0.15	0.369	1e-08
O74946	574	DNA polymerase alpha subu	yes	N/A	0.270	0.095	0.446	9e-06
P38121	705	DNA polymerase alpha subu	yes	N/A	0.522	0.150	0.338	0.0003

>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 54  ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
           I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct: 237 IEAFTPLLAPAQEPVTLLGQIGCD-SNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYS 295

Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPL 144
           +FPGQ+V   G N +  + +ATK+Y    LP 
Sbjct: 296 LFPGQVVIMEGINTTGRKLVATKLYEGVPLPF 327

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.
Homo sapiens (taxid: 9606)

>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 54  ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
           I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct: 239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297

Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSE 146
           +FPGQ+V   G N +  + +AT++Y    LP  +
Sbjct: 298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQ 331

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Bos taurus (taxid: 9913)

>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 54  ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
           I    P L      +  +G+I CD S+GKLN+ SV+LEGD+  S G  I + L E    +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGKLNSKSVILEGDQEHSYGAQIPVDLSELKEYS 295

Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSE 146
           +FPGQ+V   G N +  +  ATK+Y    LP  +
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLPFYQ 329

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Mus musculus (taxid: 10090)

>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 54  ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVA 112
           I    P L      +  +G+I CD S+G+LN+ SV+LEGD   S G  I + + E    +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGRLNSKSVILEGDREHSSGAQIPVDVSELKDYS 295

Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPL 144
           +FPGQ+V   G N +  +  ATK+Y    LP 
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLPF 327

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Rattus norvegicus (taxid: 10116)

>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 81  GKLNAASVLLEGDEVTSGGRSISLKLPET-GVAVFPGQIVAARGSNPSRNQFIATK 135
           G+LN  S+LLE       G  + LK+ +    ++FPGQIV+ +GSNPS N FIA +
Sbjct: 220 GRLNQNSILLESSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKGSNPSGNMFIAKE 275

May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 12/118 (10%)

Query: 57  LVPFLFGDTT-----EITAIGRIVCD--TSDGKLNAASVLLEGDEVTSGGRSISLKLPET 109
           L P  F D T     EI A+GRIV D  T D  LN  S+ LE   +   GR + L L + 
Sbjct: 278 LSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQV 337

Query: 110 G-VAVFPGQIVAARGSNPSRNQFIATKI----YSDASLPLSETRPALDQNTEMYKLRV 162
             ++ F GQIVA +G N + + F    I    Y ++ +  S+       N E   L+V
Sbjct: 338 NELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKV 395

Non-catalytic component of DNA polymerase alpha, which in a complex with DNA primase (DNA polymerase alpha:primase) constitutes a replicative polymerase. POL12 may play an essential role at the early stage of chromosomal DNA replication by coupling DNA polymerase alpha to the cellular replication machinery (By similarity). Interacts with MCM10.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
452845614	667	hypothetical protein DOTSEDRAFT_59988 [D	0.492	0.149	0.417	3e-12
156384823	607	predicted protein [Nematostella vectensi	0.423	0.141	0.439	2e-11
346975446	658	DNA polymerase subunit alpha B [Verticil	0.423	0.130	0.418	6e-11
310794290	659	DNA polymerase alpha/epsilon subunit B [	0.428	0.132	0.413	1e-10
260822499	521	hypothetical protein BRAFLDRAFT_120094 [	0.389	0.151	0.45	1e-10
342880849	655	hypothetical protein FOXB_07662 [Fusariu	0.532	0.164	0.370	1e-10
291222797	601	PREDICTED: MGC80532 protein-like [Saccog	0.448	0.151	0.413	1e-10
443709652	465	hypothetical protein CAPTEDRAFT_95153, p	0.438	0.191	0.406	1e-10
302408437	593	DNA polymerase subunit alpha B [Verticil	0.423	0.145	0.406	1e-10
451851852	695	hypothetical protein COCSADRAFT_141761 [	0.394	0.115	0.452	1e-10

>gi|452845614|gb|EME47547.1| hypothetical protein DOTSEDRAFT_59988 [Dothistroma septosporum NZE10]

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 65  TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGS 124
           T EI A+GRI CDT +GKLNAAS++LE       G  + LK+   G   FPG+IVA +GS
Sbjct: 253 TAEIVAVGRIACDTPNGKLNAASLVLETSRRMGAGMRVPLKMESLGFDFFPGKIVALKGS 312

Query: 125 NPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKG 167
           N S   F AT++     LP + +R    ++ EM+  R++   G
Sbjct: 313 NVSGEFFAATEVLPMPLLPPAASR---TEDIEMHNDRLAGADG 352

Source: Dothistroma septosporum NZE10

Species: Mycosphaerella pini

Genus: Mycosphaerella

Family: Mycosphaerellaceae

Order: Capnodiales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|156384823|ref|XP_001633332.1| predicted protein [Nematostella vectensis] gi|156220400|gb|EDO41269.1| predicted protein [Nematostella vectensis]

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 5/91 (5%)

Query: 67  EITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VAVFPGQIVAARGSN 125
           E+T +GRI CD   GKLNA+SV+LEG +  S GR + L L +    A+FPGQ+VAARG N
Sbjct: 252 EVTVVGRICCDAV-GKLNASSVMLEGSQDQSQGRQVKLDLTKVQQFALFPGQVVAARGIN 310

Query: 126 PSRNQFIATKIYSDASLPLSETRPALDQNTE 156
            + ++ +  ++Y    LP      +LD+N E
Sbjct: 311 STGSKLVVNQLYEGVKLPF---YASLDRNGE 338

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|346975446|gb|EGY18898.1| DNA polymerase subunit alpha B [Verticillium dahliae VdLs.17]

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%)

Query: 65  TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGS 124
           TT + A+GRI  D+ +GKLNAAS++LE    T GG+ + L + + G + FPGQIVA +G 
Sbjct: 256 TTPVIAVGRIASDSPEGKLNAASIVLETSRRTGGGQRVPLNMGQRGFSFFPGQIVAVKGI 315

Query: 125 NPSRNQFIATKIYSDASLPLSETRPA 150
           N S ++F+   +     LP + + PA
Sbjct: 316 NSSGSEFLVEDVLDIPLLPNAASLPA 341

Source: Verticillium dahliae VdLs.17

Species: Verticillium dahliae

Genus: Verticillium

Family: Plectosphaerellaceae

Order: Glomerellales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|310794290|gb|EFQ29751.1| DNA polymerase alpha/epsilon subunit B [Glomerella graminicola M1.001]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%)

Query: 65  TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGS 124
           TTE+ A+GRI  D  +GKLNAAS++LE      GG  ++L +   G + FPGQ+VA +G 
Sbjct: 256 TTEVIAVGRIASDAPEGKLNAASLVLEMSRRVGGGLRVALNMRNKGYSFFPGQVVALKGI 315

Query: 125 NPSRNQFIATKIYSDASLPLSETRPAL 151
           N S N+F   ++     LP + + PA+
Sbjct: 316 NTSGNEFAVEEVLEVPLLPNAASTPAV 342

Source: Glomerella graminicola M1.001

Species: Glomerella graminicola

Genus: Glomerella

Family: Glomerellaceae

Order: Glomerellales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|260822499|ref|XP_002606639.1| hypothetical protein BRAFLDRAFT_120094 [Branchiostoma floridae] gi|229291983|gb|EEN62649.1| hypothetical protein BRAFLDRAFT_120094 [Branchiostoma floridae]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 68  ITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VAVFPGQIVAARGSNP 126
           IT  GR+ CD S G+LNA SVLLEG   TS  +++ L L E    ++FPGQIVA  G N 
Sbjct: 256 ITVSGRVCCDMSTGRLNAHSVLLEGSRETSARKTVHLDLSEVSEYSLFPGQIVACDGLNT 315

Query: 127 SRNQFIATKIYSDASLPLSE 146
           + ++ + +K Y    LP +E
Sbjct: 316 TGSKLVVSKFYQGVHLPFAE 335

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|342880849|gb|EGU81867.1| hypothetical protein FOXB_07662 [Fusarium oxysporum Fo5176]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 16/124 (12%)

Query: 65  TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPET-GVAVFPGQIVAARG 123
           TTE+ A+GRI  D+S+GKLNAAS++LE    T  G  + LK+      + FPGQIVA RG
Sbjct: 249 TTEVVAVGRIASDSSEGKLNAASLVLETSRRTGMGLRVPLKVDNIRSWSFFPGQIVAFRG 308

Query: 124 SNPSRNQFIATKIYSDASLPLSETRP---------------ALDQNTEMYKLRVSYEKGL 168
           +N S N+F+  ++     LP + + P               A+D+++E   L + Y  G 
Sbjct: 309 TNASGNEFVVKEVLEVPLLPSAASLPSALEGHRERFRGGPDAMDEDSEPAPLNILYASGP 368

Query: 169 PLAD 172
             AD
Sbjct: 369 YTAD 372

Source: Fusarium oxysporum Fo5176

Species: Fusarium oxysporum

Genus: Fusarium

Family: Nectriaceae

Order: Hypocreales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|291222797|ref|XP_002731400.1| PREDICTED: MGC80532 protein-like [Saccoglossus kowalevskii]

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 69  TAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSR 128
           TA GRI CD S+GKLN+ SV+LEG   TS G+ +SL L     ++FPGQIVA  G+N + 
Sbjct: 256 TAAGRICCD-SNGKLNSQSVILEGSSETSAGKHVSLLLNIKEYSLFPGQIVAVDGTNSTG 314

Query: 129 NQFIATKIYSDASLPLSETRPALDQNTEMYKL 160
           ++ + +K+Y    LP ++          +Y L
Sbjct: 315 SKLVVSKLYPGLMLPFNQIEDKESSTGPLYTL 346

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|443709652|gb|ELU04244.1| hypothetical protein CAPTEDRAFT_95153, partial [Capitella teleta]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 71  IGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRN 129
           +GRI CD  +GKLNA SV+LEG    S G  + + L +    A+FPGQIVA RG+N S  
Sbjct: 129 VGRICCDC-NGKLNAQSVILEGCRGVSAGCRVPVDLSQLPQYALFPGQIVAMRGTNSSGR 187

Query: 130 QFIATKIYSDASLPLSETRPALDQNTEMYKL 160
           +F+A +++   +LPL +  P ++     +K 
Sbjct: 188 KFVAKELFQPTALPLPDHEPNMENGKVTHKF 218

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|302408437|ref|XP_003002053.1| DNA polymerase subunit alpha B [Verticillium albo-atrum VaMs.102] gi|261358974|gb|EEY21402.1| DNA polymerase subunit alpha B [Verticillium albo-atrum VaMs.102]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%)

Query: 65  TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGS 124
           T+ + A+GRI  D+ +GKLNAAS++LE    T GG+ + L + + G + FPGQIVA +G 
Sbjct: 191 TSPVIAVGRIASDSPEGKLNAASIVLETSRRTGGGQRVPLNMGQRGFSFFPGQIVAVKGI 250

Query: 125 NPSRNQFIATKIYSDASLPLSETRPA 150
           N S ++F+   +     LP + + PA
Sbjct: 251 NSSGSEFLVEDVLDMPLLPNAASLPA 276

Source: Verticillium albo-atrum VaMs.102

Species: Verticillium alfalfae

Genus: Verticillium

Family: Plectosphaerellaceae

Order: Glomerellales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|451851852|gb|EMD65150.1| hypothetical protein COCSADRAFT_141761 [Cochliobolus sativus ND90Pr]

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 62  FGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVA 120
           +   +EI A+GRI CDTS+GKLN AS++LEG      GR + L +        FPGQIVA
Sbjct: 259 YASPSEIIAVGRIACDTSEGKLNTASLVLEGSRRHGSGRRVPLNIEGLQSYNFFPGQIVA 318

Query: 121 ARGSNPSRNQFIATKIYSDASLPL 144
            RG+N S + F+ +++    SLPL
Sbjct: 319 LRGTNASGDSFVVSEVL---SLPL 339

Source: Cochliobolus sativus ND90Pr

Species: Bipolaris sorokiniana

Genus: Bipolaris

Family: Pleosporaceae

Order: Pleosporales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
ZFIN|ZDB-GENE-030131-778	600	pola2 "polymerase (DNA directe	0.428	0.145	0.430	2.3e-12
UNIPROTKB|B4DNB4	361	POLA2 "cDNA FLJ60312, highly s	0.438	0.246	0.406	4.5e-11
UNIPROTKB|Q14181	598	POLA2 "DNA polymerase alpha su	0.438	0.148	0.406	1.2e-10
UNIPROTKB|F1MXS4	600	POLA2 "DNA polymerase alpha su	0.532	0.18	0.351	1.2e-10
UNIPROTKB|F1MLC0	604	POLA2 "DNA polymerase alpha su	0.532	0.178	0.351	1.2e-10
UNIPROTKB|Q58D13	604	POLA2 "DNA polymerase alpha su	0.532	0.178	0.351	1.2e-10
UNIPROTKB|F1RQV4	598	POLA2 "Uncharacterized protein	0.453	0.153	0.382	1.5e-10
UNIPROTKB|F6XEE7	595	POLA2 "Uncharacterized protein	0.438	0.149	0.395	2.5e-10
UNIPROTKB|E2R2N0	597	POLA2 "Uncharacterized protein	0.438	0.149	0.395	2.5e-10
MGI|MGI:99690	600	Pola2 "polymerase (DNA directe	0.438	0.148	0.395	6.8e-10

ZFIN|ZDB-GENE-030131-778 pola2 "polymerase (DNA directed), alpha 2" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 40/93 (43%), Positives = 56/93 (60%)

Query:    68 ITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VAVFPGQIVAARGSNP 126
             IT +G++ CD S+GKLNA SVLLE  +   GGR + + L E    ++FPGQ+V   G NP
Sbjct:   251 ITVLGQVCCD-SNGKLNAQSVLLEAGQ-EQGGRQVPVDLSELKEFSLFPGQVVVMEGMNP 308

Query:   127 SRNQFIATKIYSDASLPL---SETRPALDQNTE 156
             S  + +ATK+Y    LP    SE +  +D+  E
Sbjct:   309 SGEKLVATKLYEGIPLPFYCPSEVKQEMDEVCE 341

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|B4DNB4 POLA2 "cDNA FLJ60312, highly similar to DNA polymerase subunit alpha B" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 37/91 (40%), Positives = 50/91 (54%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct:    29 IEAFTPLLAPAQEPVTLLGQIGCD-SNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYS 87

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
             +FPGQ+V   G N +  + +ATK+Y    LP
Sbjct:    88 LFPGQVVIMEGINTTGRKLVATKLYEGVPLP 118

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q14181 POLA2 "DNA polymerase alpha subunit B" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 37/91 (40%), Positives = 50/91 (54%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct:   237 IEAFTPLLAPAQEPVTLLGQIGCD-SNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYS 295

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
             +FPGQ+V   G N +  + +ATK+Y    LP
Sbjct:   296 LFPGQVVIMEGINTTGRKLVATKLYEGVPLP 326

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003674 "molecular_function" evidence=ND

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006270 "DNA replication initiation" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MXS4 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/111 (35%), Positives = 59/111 (53%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct:   239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVS 163
             +FPGQ+V   G N +  + +AT++Y    LP  +     D ++E + + V+
Sbjct:   298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQPDEE-DGDSEQFMVLVA 347

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1MLC0 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/111 (35%), Positives = 59/111 (53%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct:   239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVS 163
             +FPGQ+V   G N +  + +AT++Y    LP  +     D ++E + + V+
Sbjct:   298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQPDEE-DGDSEQFMVLVA 347

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q58D13 POLA2 "DNA polymerase alpha subunit B" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/111 (35%), Positives = 59/111 (53%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct:   239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVS 163
             +FPGQ+V   G N +  + +AT++Y    LP  +     D ++E + + V+
Sbjct:   298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQPDEE-DGDSEQFMVLVA 347

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RQV4 POLA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 36/94 (38%), Positives = 51/94 (54%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +T +G+I CD S+GKLN  SV+LEGD   S G  I + L E    +
Sbjct:   238 IEAFTPVLVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDREHSSGAQIPVDLSELKEYS 296

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSE 146
             +FPGQ+V   G N +  + +AT++Y    LP  +
Sbjct:   297 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQ 330

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F6XEE7 POLA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +  +G+I CDT+ GKLN+ SV+LEGD   S G  I + L E    +
Sbjct:   233 IEAFTPVLVPAQEPVILLGQIGCDTN-GKLNSKSVILEGDREHSSGAQIPVDLSELKEYS 291

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
             +FPGQ+V   G N +  + +ATK+Y    LP
Sbjct:   292 LFPGQVVIMEGINTTGRKLVATKLYEGLPLP 322

GO:0006260 "DNA replication" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2R2N0 POLA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +  +G+I CDT+ GKLN+ SV+LEGD   S G  I + L E    +
Sbjct:   233 IEAFTPVLVPAQEPVILLGQIGCDTN-GKLNSKSVILEGDREHSSGAQIPVDLSELKEYS 291

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
             +FPGQ+V   G N +  + +ATK+Y    LP
Sbjct:   292 LFPGQVVIMEGINTTGRKLVATKLYEGLPLP 322

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:99690 Pola2 "polymerase (DNA directed), alpha 2" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query:    54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
             I    P L      +  +G+I CD S+GKLN+ SV+LEGD+  S G  I + L E    +
Sbjct:   237 IEAFTPLLVPAQEPVILLGQIGCD-SNGKLNSKSVILEGDQEHSYGAQIPVDLSELKEYS 295

Query:   113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
             +FPGQ+V   G N +  +  ATK+Y    LP
Sbjct:   296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLP 326

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IDA

GO:0006260 "DNA replication" evidence=ISO;IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
COG5214	581	COG5214, POL12, DNA polymerase alpha-primase compl	3e-10

>gnl|CDD|227539 COG5214, POL12, DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 66  TEITAIGRIVCDTS--DGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAAR 122
           +    +GRIV  ++    KLN+ SV LE       G  + L L      +VFPGQIVA +
Sbjct: 203 SSFYTVGRIVNPSTNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVAVK 262

Query: 123 GSNPSRNQFIATKIYSDASLPLS 145
           G N    +F    I     +P++
Sbjct: 263 GKNTDGGKFTVEAILPIPVVPIN 285

Length = 581

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG1625|consensus	600		100.0
COG5214	581	POL12 DNA polymerase alpha-primase complex, polyme	100.0
PRK04036	504	DNA polymerase II small subunit; Validated	98.22
PF08418	253	Pol_alpha_B_N: DNA polymerase alpha subunit B N-te	96.96
KOG3818|consensus	525		90.82
KOG2732|consensus	435		87.25
PF03100	131	CcmE: CcmE; InterPro: IPR004329 CcmE is the produc	84.65

>KOG1625|consensus

Probab=100.00  E-value=2.2e-43  Score=334.01  Aligned_cols=163  Identities=27%  Similarity=0.380  Sum_probs=144.7

Q ss_pred             CcccccccccchhHHHhhhh----ccchh--ccc-cccccCccCccccEEEEEEEeeCC--CCCCCCcceeEEEeeccCC
Q psy145           27 SAYRIPWISNLSQFNAIIGL----GTVTI--GDI-TLLVPFLFGDTTEITAIGRIVCDT--SDGKLNAASVLLEGDEVTS   97 (203)
Q Consensus        27 ~~yrYMyek~~d~~e~L~e~----~~vl~--~~I-eef~~~~~~sq~~v~vvGRI~~Ds--~egkLn~~Sv~LEgsr~~g   97 (203)
                      .+|||||+|..|++|.|..|    +..+.  ..| ++|+++..+||++|++||||+||+  .+||||++||+||+||+.|
T Consensus       199 ~~~~~m~dkl~d~~e~l~~Ri~~~~~~~~~~~~~~ed~~~p~~~Sq~~v~avG~I~~d~~~~~~kln~~Sv~Less~e~~  278 (600)
T KOG1625|consen  199 PSYRYMYDKLSDRSEVLRDRIESFAPAIQESYLISEDFANPSIPSQSSVYAVGQIVCDSTKDNGKLNEESVLLESSREDS  278 (600)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCCcccccccceEEEEEEecCCCCcccccCccceEeeeccccC
Confidence            49999999999999977765    44443  446 999999999999999999999998  3589999999999999999


Q ss_pred             CceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCccccccccccccceEEEEcCc--------
Q psy145           98 GGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGL--------  168 (203)
Q Consensus        98 ~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP--------  168 (203)
                      +|+||+|||++ ++||+|||||||+||+|++|++|+|++||++||||.|.+..++++..+...+ ||+||||        
T Consensus       279 ~g~~Vrldls~l~e~SiFPGQIVavkG~N~~G~~l~v~ki~~~~plp~~~~~~qed~~~~~~~~-ivvasGPyt~sDnl~  357 (600)
T KOG1625|consen  279 SGVRVRLDLSRLKEYSIFPGQIVAVKGKNPTGEKLTVEKILPIPPLPIPVQPLQEDATFEANTV-IVVASGPYTASDNLS  357 (600)
T ss_pred             CCceEEeehhhccceeecCCcEEEEeeecCCCCeEEeeeeccCCCCCCCcCchhhhhhccccce-EEEEecCccCccccc
Confidence            99999999999 9999999999999999999999999999999999977766666654333346 9999999        


Q ss_pred             --ChHHHHHHHHhcCCCeEEEeee
Q psy145          169 --PLADYLVNVFEKSYNSAFITTV  190 (203)
Q Consensus       169 --pL~DLL~~v~~~~PdvLvlt~~  190 (203)
                        ||+|||.||++++||||||+|-
T Consensus       358 yepL~dll~~v~~~~pdvLIL~GP  381 (600)
T KOG1625|consen  358 YEPLCDLLDYVNAERPDVLILFGP  381 (600)
T ss_pred             hhHHHHHHHHHhcCCCCEEEEecc
Confidence              5569999999999999999994

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]

Probab=100.00  E-value=1.3e-35  Score=274.89  Aligned_cols=159  Identities=24%  Similarity=0.297  Sum_probs=140.1

Q ss_pred             CCCcccccccccchhHHHhhhhccchhcc---------------ccccccCccCccccEEEEEEEeeCCC--CCCCCcce
Q psy145           25 QPSAYRIPWISNLSQFNAIIGLGTVTIGD---------------ITLLVPFLFGDTTEITAIGRIVCDTS--DGKLNAAS   87 (203)
Q Consensus        25 ~~~~yrYMyek~~d~~e~L~e~~~vl~~~---------------Ieef~~~~~~sq~~v~vvGRI~~Ds~--egkLn~~S   87 (203)
                      ++++||+||.       +|-+.+++|+++               +|+|++++..||+++|+||||+.+++  ++|||+.|
T Consensus       154 k~~~~r~m~q-------~L~~~s~vlddrielfs~~~~~~y~ls~eDfa~p~~~sqs~~y~vGrIv~~s~~~g~~Ln~eS  226 (581)
T COG5214         154 KPRVSRFMYQ-------KLRKKSKVLDDRIELFSMKPYFLYLLSIEDFAPPNNVSQSSFYTVGRIVNPSTNFGHKLNSES  226 (581)
T ss_pred             chhHHHHHHH-------HHhhhhhhhHHHHHHHhhhhHHHhcCCHhhcCCccccccCceEEEEEecCCCcccccccCcce
Confidence            5689999994       455555555554               55888999999999999999999984  36999999


Q ss_pred             eEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCCCC-CCCCccccccc----cccccce
Q psy145           88 VLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLP-LSETRPALDQN----TEMYKLR  161 (203)
Q Consensus        88 v~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp-~p~s~~~~~~~----~~~~~l~  161 (203)
                      |+||+||+.|.|.||+|||+. ++||+|||||||+||+|+.|++|.|++|+.+|++| .|+++.++.+.    .+-.+++
T Consensus       227 v~lesSr~gg~gvrVRL~l~~l~~yS~FpGQIVavKGkN~~G~~ftv~~ilpiP~~p~~p~s~~qE~~~fqan~~~q~~~  306 (581)
T COG5214         227 VFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVAVKGKNTDGGKFTVEAILPIPVVPINPASDGQEKKYFQANTNNQPTS  306 (581)
T ss_pred             eeeeeecccCCCeEEEeehhhccccccccccEEEEecccCCCCeEEeeeeeccCCcCCCcCcchhhhhhhccccCCCceE
Confidence            999999999999999999999 99999999999999999999999999999999999 88888776642    2336899


Q ss_pred             EEEEcCc----------ChHHHHHHHHhcCCCeEEEeee
Q psy145          162 VSYEKGL----------PLADYLVNVFEKSYNSAFITTV  190 (203)
Q Consensus       162 i~~A~GP----------pL~DLL~~v~~~~PdvLvlt~~  190 (203)
                      |+++|||          ||.|.+.+|.++.-|||||.|-
T Consensus       307 iv~~sGPy~~~dd~s~~pl~~~id~vn~n~vdvlIl~GP  345 (581)
T COG5214         307 IVAFSGPYGPRDDLSGSPLFDAIDRVNANDVDVLILIGP  345 (581)
T ss_pred             EEEEcCCCCCccccCcChHHHHHHHhccCCccEEEEecc
Confidence            9999998          6789999999999999999985

>PRK04036 DNA polymerase II small subunit; Validated

Probab=98.22  E-value=1.5e-05  Score=76.22  Aligned_cols=116  Identities=13%  Similarity=0.168  Sum_probs=74.5

Q ss_pred             ccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC-C----c--ceecCCcEEEEEee-cCCCCeEEEee
Q psy145           64 DTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-T----G--VAVFPGQIVAARGS-NPSRNQFIATK  135 (203)
Q Consensus        64 sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~----~--~SLFPGQIVavkG~-N~~G~~fvV~e  135 (203)
                      ..+.++++|.|. |-.+.+=+...+.||-.     ..||+|.+++ +    .  -.|++|+|||++|. +..|+.|.|++
T Consensus       152 ~~~~~~viG~v~-~~~~~~~g~~~~~LED~-----sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~~g~~f~v~~  225 (504)
T PRK04036        152 GGEEVSIIGMVS-DIRSTKNGHKIVELEDT-----TGTFPVLIMKDREDLAELADELLLDEVIGVEGTLSGDGGLIFADE  225 (504)
T ss_pred             CCceEEEEEEEE-EeecccCCceEEEEECC-----CCeEEEEeecchhhhhhhhhcccCceEEEEEEEEcCCCCEEEEEE
Confidence            568899999995 42111111125788864     4788998865 3    2  26999999999999 55666999999


Q ss_pred             cccCCCCCCCCCccccccccccccceEEEEcCc----------ChHHHHHHHH---------hcCCCeEEEeeeh
Q psy145          136 IYSDASLPLSETRPALDQNTEMYKLRVSYEKGL----------PLADYLVNVF---------EKSYNSAFITTVA  191 (203)
Q Consensus       136 I~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP----------pL~DLL~~v~---------~~~PdvLvlt~~~  191 (203)
                      |+-+...+. .+.+...     ....+++-||-          .+..|++++.         +.+||.+||+|--
T Consensus       226 i~~p~~p~~-~~~~~~~-----~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDi  294 (504)
T PRK04036        226 IIRPDVPRT-KEPPTKD-----EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDL  294 (504)
T ss_pred             EECCCCCcc-CCCCcCC-----CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcc
Confidence            975543332 1111111     23444444441          2345677777         7889999999953

>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []

Probab=96.96  E-value=0.0002  Score=62.06  Aligned_cols=27  Identities=15%  Similarity=0.113  Sum_probs=10.7

Q ss_pred             CCCcccccccccchhHHHhhhhccchhccccccc
Q psy145           25 QPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLV   58 (203)
Q Consensus        25 ~~~~yrYMyek~~d~~e~L~e~~~vl~~~Ieef~   58 (203)
                      +-++|||||+       +|.++++|||++|++|+
T Consensus       205 ~k~~yr~M~~-------kL~e~sevLDdrId~f~  231 (253)
T PF08418_consen  205 KKYKYRYMFQ-------KLSERSEVLDDRIDEFA  231 (253)
T ss_dssp             -------S----------HHHHHHHHHHHHHHHH
T ss_pred             cccCchHHHH-------HHHHHHHHHHHHHHHHH
Confidence            3389999994       56666666666655433

; PDB: 4E2I_9 2KEB_A 3FLO_G.

>KOG3818|consensus

Probab=90.82  E-value=0.88  Score=44.19  Aligned_cols=69  Identities=19%  Similarity=0.237  Sum_probs=50.7

Q ss_pred             CccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC--Ccceec-CCcEEEEEeecCCCCeEEEeecccC
Q psy145           63 GDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE--TGVAVF-PGQIVAARGSNPSRNQFIATKIYSD  139 (203)
Q Consensus        63 ~sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~--~~~SLF-PGQIVavkG~N~~G~~fvV~eI~~~  139 (203)
                      ..-..+++.|.+.--- +|     ...||.-     ...|.||+++  -+..|| ||.+|.++|.-.+ +.|.|.++= .
T Consensus       174 ~~~~~~lvLGlLTq~k-~G-----~~~lEDp-----sgsVqlDlsqa~fh~glf~egC~VL~EG~f~~-~vf~V~~lg-~  240 (525)
T KOG3818|consen  174 RALQSFLVLGLLTQLK-EG-----KFHLEDP-----SGSVQLDLSQAKFHHGLFCEGCFVLVEGTFES-GVFHVNELG-F  240 (525)
T ss_pred             ccccceeeeehhhhcc-CC-----cEEEeCC-----CCcEEEeecccccccceeccceEEEEeeeeec-ceEEEeecc-C
Confidence            3445677888877544 45     4678864     3579999999  667777 9999999999877 699999874 4


Q ss_pred             CCCCC
Q psy145          140 ASLPL  144 (203)
Q Consensus       140 p~lp~  144 (203)
                      ||..+
T Consensus       241 PP~E~  245 (525)
T KOG3818|consen  241 PPVER  245 (525)
T ss_pred             CCCCc
Confidence            44443

>KOG2732|consensus

Probab=87.25  E-value=5.2  Score=38.50  Aligned_cols=97  Identities=18%  Similarity=0.322  Sum_probs=65.5

Q ss_pred             cCccc-cEEEEEEEeeCCC-----------CCCC-----------CcceeEEEeeccCCCceEEEeecCC-CcceecCCc
Q psy145           62 FGDTT-EITAIGRIVCDTS-----------DGKL-----------NAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQ  117 (203)
Q Consensus        62 ~~sq~-~v~vvGRI~~Ds~-----------egkL-----------n~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQ  117 (203)
                      ...++ +.++||-|.+...           +.++           -+..++||..     -+||+|..+. +..-+==|-
T Consensus        64 l~~~~~~C~vVGTlfk~~~lKPsIl~~v~~e~~~~p~~~~~~y~~ped~i~LEDe-----~grV~L~G~~i~~~~~vTGv  138 (435)
T KOG2732|consen   64 LEKGKGECWVVGTLFKAMALKPSILDEVSNEHKVAPDPEESNYHSPEDEIVLEDE-----SGRVRLEGSFISHAVLVTGV  138 (435)
T ss_pred             eccCCccEEEEEehhhhcccCcHHHHHHhhhhccCCCCcccccCCccceEEEecC-----CceEEEEeecccccceeeeE
Confidence            44455 9999999998641           0010           0224666652     4799999988 888888999


Q ss_pred             EEEEEeecCCCCeEEEeecccCCCCCCCCCccccccccccccceEEEEcCc
Q psy145          118 IVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGL  168 (203)
Q Consensus       118 IVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP  168 (203)
                      +||+-|.-..-+.|.|+.|+-.-..|...+.+...     ..-.|...||.
T Consensus       139 vvavlG~~~e~G~F~VeDv~fp~~~pq~~P~~~~~-----~~~~i~lVSGL  184 (435)
T KOG2732|consen  139 VVAVLGKEAEAGRFLVEDVLFPGSSPQGKPRATLP-----SQRKIALVSGL  184 (435)
T ss_pred             EEEEecccccCceEEEEEEeccCCCccCCCCCcCC-----CCCEEEEEecc
Confidence            99999999988999999997665554322222111     12357777774

>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria

Probab=84.65  E-value=7.7  Score=30.91  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=48.1

Q ss_pred             CccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145           63 GDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSD  139 (203)
Q Consensus        63 ~sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~  139 (203)
                      .....+.+-|.|..++-+-.-++..+...-.+.   +..++....+ ..-.|-.||-|+++|+-..++.|.+++|+.-
T Consensus        48 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~---~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~~~~g~F~A~~lL~K  122 (131)
T PF03100_consen   48 KVGRKVRVGGLVVEGSVEYDPDGNTLTFTITDG---GKEIPVVYTGPLPDLFREGQGVVVEGRLGEDGVFEATELLAK  122 (131)
T ss_dssp             -TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-S---S-EEEEEEES--CTT--TTSEEEEEEEECCTSEEEEEEEEET
T ss_pred             cCCceEEEeeEEccCCEEEcCCCCEEEEEEEEC---CcEEEEEECCCCCccccCCCeEEEEEEECCCCEEEEEEEEeC
Confidence            366788999998876511111233333333222   5778888888 5556669999999999978889999999753

Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
3flo_A	460	Crystal Structure Of The Carboxyl-Terminal Domain O		3e-05

>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast Dna Polymerase Alpha In Complex With Its B Subunit Length = 460

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 57  LVPFLFGDTT-----EITAIGRIVCD--TSDGKLNAASVLLEGDEVTSGGRSISLKLPET 109
           L P  F D T     EI A+GRIV D  T D  LN  S+ LE   +   GR + L L + 
Sbjct: 33  LSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQV 92
Query: 110 G-VAVFPGQIVAARGSNPSRNQFIATKI----YSDASLPLSETRPALDQNTEMYKLRV 162
             ++ F GQIVA +G N + + F    I    Y ++ +  S+       N E   L+V
Sbjct: 93  NELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKV 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3flo_A	460	DNA polymerase alpha subunit B; protein-protein co	5e-20

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460

 Score = 86.0 bits (212), Expect = 5e-20
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 65  TTEITAIGRIVCD--TSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAA 121
            +EI A+GRIV D  T D  LN  S+ LE   +   GR + L L +   ++ F GQIVA 
Sbjct: 46  QSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAF 105

Query: 122 RGSNPSRNQFIATKIYSDASLPLSETRPALDQNTE 156
           +G N + + F    I          +     Q  +
Sbjct: 106 KGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQ 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
3flo_A	460	DNA polymerase alpha subunit B; protein-protein co	100.0
3e0j_A	476	DNA polymerase subunit delta-2; DNA polymerase del	96.0
2kct_A	94	Cytochrome C-type biogenesis protein CCME; solutio	80.02

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-46  Score=346.35  Aligned_cols=163  Identities=22%  Similarity=0.230  Sum_probs=137.2

Q ss_pred             cccccccccchhHHHhhhhc----cchh--cccc--ccccCccCccccEEEEEEEeeCCC--CCCCCcceeEEEeeccCC
Q psy145           28 AYRIPWISNLSQFNAIIGLG----TVTI--GDIT--LLVPFLFGDTTEITAIGRIVCDTS--DGKLNAASVLLEGDEVTS   97 (203)
Q Consensus        28 ~yrYMyek~~d~~e~L~e~~----~vl~--~~Ie--ef~~~~~~sq~~v~vvGRI~~Ds~--egkLn~~Sv~LEgsr~~g   97 (203)
                      .|||||+|..|+.|-|-++.    +++.  ++|+  +|+++..+||++|+||||||||+.  +||||++||+|||||+.|
T Consensus         1 ~yr~M~~kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f~~p~~~sq~~v~~vGRI~~Ds~~~egkLn~~Sl~LE~sr~~g   80 (460)
T 3flo_A            1 KFRTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGG   80 (460)
T ss_dssp             --CCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGBCCTTSCCSSCEEEEEEEEESSSSCCSCCCTTSEEEECCHHHH
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccCccccEEEEEEEeeCCCCCCCCcchhheEEEeccccC
Confidence            59999977666555444442    2222  3466  588999999999999999999984  899999999999999999


Q ss_pred             CceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCcccccc----ccccccceEEEEcCc----
Q psy145           98 GGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQ----NTEMYKLRVSYEKGL----  168 (203)
Q Consensus        98 ~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~----~~~~~~l~i~~A~GP----  168 (203)
                      +|+||+|||++ ++||||||||||+||+|++|++|+|+|||++|++++|.+++.+.+    .....+++|++||||    
T Consensus        81 ~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s~~~~l~~~~~~~~~~~l~ivvAsGPyT~s  160 (460)
T 3flo_A           81 VGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFAN  160 (460)
T ss_dssp             TTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEEEHHHHHHHHHHHTSSCEEEEEEESCCSCS
T ss_pred             CCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCCCHHHhhhhhhhccCCCcEEEEEeCCccCC
Confidence            99999999999 999999999999999999999999999999999988877765432    122368999999999    


Q ss_pred             ------ChHHHHHHHHhc-CCCeEEEeee
Q psy145          169 ------PLADYLVNVFEK-SYNSAFITTV  190 (203)
Q Consensus       169 ------pL~DLL~~v~~~-~PdvLvlt~~  190 (203)
                            ||+||+++++++ +||+|||+|-
T Consensus       161 dnl~yepL~~Ll~~v~~~~kPdvLIL~GP  189 (460)
T 3flo_A          161 DNFSLELLQEFIDSINNEVKPHVLIMFGP  189 (460)
T ss_dssp             SCCCCHHHHHHHHHCCCCCCCSEEEEESC
T ss_pred             CccChHHHHHHHHHHHhccCCCEEEEecC
Confidence                  567999999997 8999999993

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}

Probab=96.00  E-value=0.049  Score=51.13  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=51.8

Q ss_pred             ccCccccEEEEEEEeeCC----------CCC-CC-----------CcceeEEEeeccCCCceEEEeecCCCcceecCCcE
Q psy145           61 LFGDTTEITAIGRIVCDT----------SDG-KL-----------NAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQI  118 (203)
Q Consensus        61 ~~~sq~~v~vvGRI~~Ds----------~eg-kL-----------n~~Sv~LEgsr~~g~G~rV~Ldls~~~~SLFPGQI  118 (203)
                      .....+..+++|-|.++.          +++ .+           ....++||-.     ..||+|...-+.-.|-+|.|
T Consensus        91 dl~~ge~c~viGTvyk~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDe-----sGRv~L~g~~~~~~lVTG~V  165 (476)
T 3e0j_A           91 ELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDE-----LQRIKLKGTIDVSKLVTGTV  165 (476)
T ss_dssp             SCCTTCCEEEEEEEEEEC----------------------CCCCCSSCEEEEECS-----SCEEEEEESCCTTTCCTTCE
T ss_pred             cccCCCEEEEEEEEEecccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECC-----CCEEEEEEEcccccccCCcE
Confidence            345778999999999863          011 11           1235777753     45888877226677999999


Q ss_pred             EEEEeecCCCCeEEEeecccCC
Q psy145          119 VAARGSNPSRNQFIATKIYSDA  140 (203)
Q Consensus       119 VavkG~N~~G~~fvV~eI~~~p  140 (203)
                      |||+|+-...+.|.|++|+-+-
T Consensus       166 vaV~G~~~~~G~F~V~di~~Pd  187 (476)
T 3e0j_A          166 LAVFGSVRDDGKFLVEDYCFAD  187 (476)
T ss_dssp             EEEEEEECTTSSEEEEEEEECB
T ss_pred             EEEEEEEcCCCeEEEEEEEcCC
Confidence            9999995555678999986643

>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}

Probab=80.02  E-value=13  Score=27.44  Aligned_cols=77  Identities=14%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             CccccEEEEEEEeeCCCCCCC-CcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCC-CCeEEEeecccC
Q psy145           63 GDTTEITAIGRIVCDTSDGKL-NAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPS-RNQFIATKIYSD  139 (203)
Q Consensus        63 ~sq~~v~vvGRI~~Ds~egkL-n~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~-G~~fvV~eI~~~  139 (203)
                      +....+.+-|.|...+ =.+- +...+...-.+....+..|++.... ..=-|=.||=|+++|+-.. ++.|.+++|+.-
T Consensus         6 ~~~~~iRvgG~V~~GS-v~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~evLaK   84 (94)
T 2kct_A            6 DKLHTVRLFGTVAADG-LTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTLMTK   84 (94)
T ss_dssp             CTTCCEEEEEEECSTT-CEECTTSSEEEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEEEES
T ss_pred             CCCCeEEEeeEEeCCe-EEecCCCCEEEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEEEEe
Confidence            4556889999998765 1111 1223444433332247889998888 3334668999999999754 579999999864


Q ss_pred             C
Q psy145          140 A  140 (203)
Q Consensus       140 p  140 (203)
                      -
T Consensus        85 h   85 (94)
T 2kct_A           85 C   85 (94)
T ss_dssp             S
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00