Psyllid ID: psy14768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
GREAPGTVTNITPPLLLSPAESESTRSKKLLEPLNTQAVDLAEDAGDGSKSNSPSPARARRSRKNCAETYAHKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHcccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccEEEEcccccccccccccccEEEEEEEEEEEEcccEEEEEEcccccccccccccccccEEEEccccccHHHHHHHHccccccccccccccccccccEEEccccccEEEEEEEEEcccccccccccHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccccccccccccHHHHccccccccccHHcccccccccccccHHHHHHccccHHHHHHHccccccccHccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEHHHHccccEEEEccccccHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEEEEcccEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHccccccccEEEEEEEcccccHcccccHHHHHHHHHHcccccEEEccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccEccccccccccccccccccc
Coil and Loop (DISEMBL)
greapgtvtnitpplllspaesestrskklleplNTQAVDlaedagdgsksnspspararRSRKNCAETYAHKhinalparelcksnspsprasvigfeprpsdaETVLKILVIGDSTVGKTSYVQGFVqnkfldnykntvgvdfstkllshkkyggrpygtfspiqtpsylILITgdstvgktSYVQGFVqnkfldnykntvgvdfstkllshkkyggrpvkLQIWDIyctlspiqiptypilitgdstvgktSYVQGFVqnkfldnykntvgvdfstkllshkkyggrpvklQIWDIAGQDRYICMSRVyyqnsdgciimfdltnrksFESVVQWKhdldskcildngamlPCLLLaskcdlpdrqvEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERkssirlseetlrddqpkklvpadkvstycwc
Flexible Loop (DISEMBL)
greapgtvtnitpplllspaeseSTRSKKLLEPLNTQAVdlaedagdgsksnspspararrsRKNCAETYAHKhinalparelcksnSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKllshkkyggrpVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRmeeeaverkssirlseetlrddqpkklvpadkvstycwc
Low Complexity Region (SEG)
GREAPGTVTNITPPLLLSPAESESTRSKKLLEPLNTQAVDLAEDAGDGsksnspspararrsrknCAETYAHKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC
Disordered region (IsUnstruct)
*********************************************************************************************************ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS*************************************YC**
Disordered Region (DISOPRED)
**********ITPP********************************************************************************************TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH*************IQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI***************************************TYCWC
Disordered Region (DISEMBL)
GREAPGTVTNITPPLLLS*********KKLLEPLNTQAVDLAE*********************NCAETYAHKHINALPAREL*********ASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM**********IRLSEETLRDDQPKKLVPADKVSTYCWC
Disordered Region (DISPRO)
****PGTVTNITPPLLLS**********K*****NTQAVDL**************PARAR***KNCAETYAHKHINALPAREL*******************SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GREAPGTVTNITPPLLLSPAESESTRSKKLLEPLNTQAVDLAEDAGDGSKSNSPSPARARRSRKNCAETYAHKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q5R7A4	203	Ras-related protein Rab-7	yes	N/A	0.369	0.822	0.449	2e-39
O14966	203	Ras-related protein Rab-7	yes	N/A	0.369	0.822	0.449	2e-39
Q63481	204	Ras-related protein Rab-7	yes	N/A	0.378	0.838	0.433	8e-38
Q91YQ1	204	Ras-related protein Rab-7	yes	N/A	0.378	0.838	0.433	1e-37
Q13637	225	Ras-related protein Rab-3	no	N/A	0.413	0.831	0.393	9e-37
Q06AU5	226	Ras-related protein Rab-3	no	N/A	0.422	0.845	0.375	3e-35
Q9CZE3	223	Ras-related protein Rab-3	no	N/A	0.407	0.825	0.374	6e-34
Q54QR3	219	Ras-related protein Rab-3	yes	N/A	0.393	0.812	0.409	2e-33
Q8QZZ8	211	Ras-related protein Rab-3	no	N/A	0.407	0.872	0.389	1e-32
P57729	211	Ras-related protein Rab-3	no	N/A	0.407	0.872	0.389	2e-32

>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L    Y    V+LQ+WDIA
Sbjct: 8   FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCDL    V  ++I+    +  F  W E S KE+  I ++M  L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174

Pongo abelii (taxid: 9601)

>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L    Y    V+LQ+WDIA
Sbjct: 8   FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCDL    V  ++I+    +  F  W E S KE+  I ++M  L+++++
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174

Homo sapiens (taxid: 9606)

>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1

 Score =  158 bits (400), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct: 8   FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L +G  +PCLLLA+
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           K DL    V  ++I+    +  F  W E S KE+  I ++M  LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178

Rattus norvegicus (taxid: 10116)

>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 2/173 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct: 8   FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L +G  +PCLLLA+
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           K DL    V  ++I+    +  F  W E S KE+  I ++M  LV++++ + R
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178

Mus musculus (taxid: 10090)

>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3

 Score =  154 bits (390), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/198 (39%), Positives = 132/198 (66%), Gaps = 11/198 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
           + +L+ G+  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L+   +  R  V+LQ+WDI
Sbjct: 26  FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  M+RVYY+ + G  ++FD++   +FE+V++WK DLDSK  L NG+ +P +LLA
Sbjct: 83  AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142

Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
           +KCD   D     ++++  C ++ F  W E S+K+++ IE++  FLV++I+ + +    E
Sbjct: 143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202

Query: 416 EEAVERKSSIRLSEETLR 433
           E  V++   I+L +ETLR
Sbjct: 203 ENDVDK---IKLDQETLR 217

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Homo sapiens (taxid: 9606)

>sp|Q06AU5|RAB32_PIG Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1

 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 130/197 (65%), Gaps = 6/197 (3%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
           + +L+ G+  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L+   +  R  V+LQ+WDI
Sbjct: 28  FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  M+RVYY+ + G +++FD++    FE+V++WK+DLDSK  L NG+ +P +LLA
Sbjct: 85  AGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLA 144

Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
           +KCD   D     ++++  C ++ F  W E S+K+++ I+++  FLV+ I+ + +    +
Sbjct: 145 NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQ-SFPS 203

Query: 419 VERKSSIRLSEETLRDD 435
            E    I+L EET++ +
Sbjct: 204 EENDGRIKLDEETMKKE 220

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Sus scrofa (taxid: 9823)

>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3

 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 129/195 (66%), Gaps = 11/195 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
           + +L+ G+  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L+   +  R  V+LQ+WDI
Sbjct: 24  FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 80

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  M+RVYY+ + G  ++FD++   +F++V++WK+DLDSK  L NG+ +P +LLA
Sbjct: 81  AGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLA 140

Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR---ME 415
           +KCD   D     ++++  C  + F  W E S+K+++ I+++  FLV+ ++ +++    E
Sbjct: 141 NKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSE 200

Query: 416 EEAVERKSSIRLSEE 430
           E  ++R   I+L EE
Sbjct: 201 EIDLDR---IKLVEE 212

Acts as an A-kinase anchoring protein by binding to the type II regulatory subunit of protein kinase A and anchoring it to the mitochondrion. Also involved in synchronization of mitochondrial fission.

Mus musculus (taxid: 10090)

>sp|Q54QR3|RB32A_DICDI Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 5/183 (2%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y IL+ GD   GKTS ++ FV N F  +YK+T+GVDF+ K+++        V+LQ+WDIA
Sbjct: 16  YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDP--KTEVRLQLWDIA 73

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD-NGAMLPCLLLA 359
           GQ+R+  M+RVYY+ + G +I FD+T   +FE+V +WK D+DSK     +   +P +LLA
Sbjct: 74  GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA 133

Query: 360 SKCDL-PDRQVEI-NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
           +KCDL  D  ++  N+++  C    F+ W E S+KE++ IE +  FLVD I+ +     +
Sbjct: 134 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQ 193

Query: 418 AVE 420
            +E
Sbjct: 194 PIE 196

Dictyostelium discoideum (taxid: 44689)

>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)

Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
           +P +   Y +L+ GD  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L         V+
Sbjct: 3   TPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60

Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
           LQ+WDIAGQ+R+  M+RVYY+ + G  I+FD+T   +FE+V +WK+DLDSK  L NG  +
Sbjct: 61  LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPV 120

Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
             +LLA+KCD   + V +N   +++  C ++ F+ W E S+KE++ I+++   LV  I+ 
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179

Query: 411 SKRMEEEAVE 420
           ++    E++E
Sbjct: 180 NECDLLESIE 189

May be involved in melanosomal transport and docking. Involved in the proper sorting of TYRP1.

Mus musculus (taxid: 10090)

>sp|P57729|RAB38_HUMAN Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 6/190 (3%)

Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
           +P +   Y +L+ GD  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L         V+
Sbjct: 3   APHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPE--TVVR 60

Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
           LQ+WDIAGQ+R+  M+RVYY+ + G  I+FD+T   +FE+V +WK+DLDSK  L NG  +
Sbjct: 61  LQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPV 120

Query: 354 PCLLLASKCDLPDRQVEIN---EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
             +LLA+KCD   + V +N   +++  C ++ F+ W E S+KE++ I+++   LV  I+ 
Sbjct: 121 SVVLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILA 179

Query: 411 SKRMEEEAVE 420
           ++    E++E
Sbjct: 180 NECDLMESIE 189

May be involved in melanosomal transport and docking. Involved in the proper sorting of TYRP1.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
390355996	278	PREDICTED: ras-related protein Rab-7L1-l	0.535	0.870	0.389	9e-47
321478953	175	hypothetical protein DAPPUDRAFT_39774 [D	0.351	0.908	0.515	3e-46
405965375	517	WD repeat-containing protein 82 [Crassos	0.369	0.323	0.497	3e-45
443693582	174	hypothetical protein CAPTEDRAFT_101663 [	0.365	0.948	0.520	5e-45
193631807	201	PREDICTED: ras-related protein Rab-7L1-l	0.369	0.830	0.479	1e-43
328716362	260	PREDICTED: ras-related protein Rab-7L1-l	0.369	0.642	0.479	2e-43
242013254	202	GTP-binding nuclear protein RAN1, putati	0.362	0.811	0.518	3e-43
166157852	204	uncharacterized protein LOC100135159 [Xe	0.376	0.833	0.459	4e-39
148233848	204	MGC80435 protein [Xenopus laevis] gi|491	0.378	0.838	0.456	6e-39
291402521	204	PREDICTED: RAB7, member RAS oncogene fam	0.387	0.857	0.441	5e-38

>gi|390355996|ref|XP_786497.2| PREDICTED: ras-related protein Rab-7L1-like [Strongylocentrotus purpuratus]

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 157/259 (60%), Gaps = 17/259 (6%)

Query: 164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG---VDFSTKLLS-HKKYGG 219
           + ++   + ++I GDS VGKT++V  +V  KF   +K TVG       T +L+ H   G 
Sbjct: 5   TEVKEKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVGGYRTYLDTLVLALHSGVGM 64

Query: 220 RPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 279
                         + ++   + ++I GDS VGKT++V  +V  KF   +K TVGVDF+ 
Sbjct: 65  DGA-----------TEVKEKLFKVIIVGDSLVGKTTFVHRYVSGKFDPGFKTTVGVDFAL 113

Query: 280 KLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH 339
           K +   K     V+LQ+WDIAGQ+R   ++RVYY+++  C+IMFD+T RK+F +V+ WK+
Sbjct: 114 KKIERSKQD--IVRLQLWDIAGQERVSSLTRVYYKDASACVIMFDVTQRKTFNNVMNWKN 171

Query: 340 DLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           D++ K  L NG+ +PCLLLA+K DLP   V+  EI+ +C+  NF+ W ++S K++  IE 
Sbjct: 172 DVEKKVALSNGSPVPCLLLANKIDLPSPNVKEEEIKELCNNNNFIGWNKISVKDNTNIEQ 231

Query: 400 SMNFLVDRIICSKRMEEEA 418
           SMNFLV+ ++    M  E+
Sbjct: 232 SMNFLVEEMLVQTSMARES 250

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|321478953|gb|EFX89909.1| hypothetical protein DAPPUDRAFT_39774 [Daphnia pulex]

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 124/161 (77%), Gaps = 2/161 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++I GD  VGKTS+++ +VQN F  +YK T+GVDF+ K++   +   + +KLQ+WDIA
Sbjct: 16  FKVIIIGDPGVGKTSFIRRYVQNAFRGDYKATIGVDFALKIVRWSE--NQTIKLQLWDIA 73

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+RVYY+ + GCIIMFDLT+R SFE+ V+WK D+DSKC+L++GA +PC+LLA+
Sbjct: 74  GQERFTWMTRVYYKEAQGCIIMFDLTSRNSFENAVKWKKDVDSKCVLEDGAPVPCMLLAN 133

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           KCDL  R+V+  EIE +C +++F+ W E S+K+ LM+ D M
Sbjct: 134 KCDLRQREVDQWEIETLCREHSFIGWTETSAKDDLMVGDCM 174

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405965375|gb|EKC30753.1| WD repeat-containing protein 82 [Crassostrea gigas]

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 128/169 (75%), Gaps = 2/169 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++I GD TVGKTS+VQ +V + +  +YK T+GVDF+ K++  K    + +KLQ+WDIA
Sbjct: 311 FKVIIIGDPTVGKTSFVQRYVNDAYRRDYKMTIGVDFALKVV--KWSESQTIKLQLWDIA 368

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+RVYY+++  CIIMFDLT + +F++ V+WK DLD+KC L +G+ +PCLLLA+
Sbjct: 369 GQERFTSMTRVYYKDAHACIIMFDLTQQSTFQNAVKWKKDLDTKCSLADGSPIPCLLLAN 428

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCDL  R+V+ ++IE +C +++F+ W E S KE LMIE+SM FL + ++
Sbjct: 429 KCDLSHREVQQSDIEDMCKEHDFVGWTETSVKEGLMIEESMRFLCEEMM 477

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443693582|gb|ELT94920.1| hypothetical protein CAPTEDRAFT_101663 [Capitella teleta]

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 122/167 (73%), Gaps = 2/167 (1%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           T+ +L  GD  VGKTS VQ +V   +  +YK T+GVDF+ KL+  K      +KLQ+WDI
Sbjct: 4   TFKLLTIGDPGVGKTSLVQRYVHGYYTKDYKATLGVDFALKLV--KWSDNVTIKLQLWDI 61

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  M+RVYY+++  CIIMFDLT R SF++ ++WK DLDSKC  ++G+ +PC+LLA
Sbjct: 62  AGQERFTSMTRVYYRDAHACIIMFDLTQRSSFQNALKWKADLDSKCCQEDGSSVPCILLA 121

Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
           +KCDL  R+V  +EIE+ C + NF+ W EVS KE LM+E+SM +LV+
Sbjct: 122 NKCDLSRREVNQDEIESFCREQNFIGWTEVSVKEGLMVEESMRYLVN 168

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|193631807|ref|XP_001951808.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Acyrthosiphon pisum]

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 123/169 (72%), Gaps = 2/169 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++I GD TVGKT++V+ +VQ  F   YK TVGVDF+ K++  K      +KLQ+WDIA
Sbjct: 6   FKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII--KVSETETIKLQLWDIA 63

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+RVYY+++ GC+IMFDL+N+ SF + ++WK D+D+KC   +G  +PC+LL +
Sbjct: 64  GQERFTWMTRVYYKDAHGCVIMFDLSNKNSFLNTLKWKKDVDAKCTQLDGGPIPCMLLGN 123

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCDLP RQ++  +IEA   + NF+ W E S+K+ LM+ DSM FL++ ++
Sbjct: 124 KCDLPQRQIDQLDIEAFYKENNFIGWTETSAKDGLMVNDSMQFLINSMM 172

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716362|ref|XP_003245910.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Acyrthosiphon pisum]

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 123/169 (72%), Gaps = 2/169 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++I GD TVGKT++V+ +VQ  F   YK TVGVDF+ K++  K      +KLQ+WDIA
Sbjct: 65  FKVIIIGDPTVGKTAFVKRYVQKSFSREYKGTVGVDFALKII--KVSETETIKLQLWDIA 122

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+RVYY+++ GC+IMFDL+N+ SF + ++WK D+D+KC   +G  +PC+LL +
Sbjct: 123 GQERFTWMTRVYYKDAHGCVIMFDLSNKNSFLNTLKWKKDVDAKCTQLDGGPIPCMLLGN 182

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCDLP RQ++  +IEA   + NF+ W E S+K+ LM+ DSM FL++ ++
Sbjct: 183 KCDLPQRQIDQLDIEAFYKENNFIGWTETSAKDGLMVNDSMQFLINSMM 231

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013254|ref|XP_002427327.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis] gi|212511676|gb|EEB14589.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis]

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 120/166 (72%), Gaps = 2/166 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++I GD TVGKTS+VQ +V+N +  +YK TVGVDF+ K+L  K    + +KLQ+WDIA
Sbjct: 19  FKVIIIGDPTVGKTSFVQRYVENTYKRDYKGTVGVDFALKIL--KWSDTQTIKLQLWDIA 76

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+RVYY+++ GC+IMFDLTN+ SF + ++WK D+DSKC L +G  +PC+LLA+
Sbjct: 77  GQERFTWMTRVYYKDAHGCVIMFDLTNKNSFVNTLKWKRDVDSKCSLPDGRPIPCMLLAN 136

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
           KCDL  R VE  EIE    + NF  W E S+KE  M+ DSMN + +
Sbjct: 137 KCDLSRRSVEQVEIEEFHKENNFCGWTETSAKEGDMVNDSMNAITN 182

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166157852|ref|NP_001107338.1| uncharacterized protein LOC100135159 [Xenopus (Silurana) tropicalis] gi|163916398|gb|AAI57147.1| LOC100135159 protein [Xenopus (Silurana) tropicalis]

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 117/172 (68%), Gaps = 2/172 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDSTVGKTS +Q +V + F  +YK T+GVDF+ K++         V+LQ+WDIA
Sbjct: 8   FKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVVQWSD--TETVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+ +  C+IMFDLTN +SF +   WK DLD+K IL NG  +PC+LLA+
Sbjct: 66  GQERFASMTRLYYKQASACVIMFDLTNSESFRNCQMWKDDLDNKVILPNGDFVPCILLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           KCDL    V   +I+    + NF+ W E S KE++ I +SM  L++R++ S+
Sbjct: 126 KCDLSPWAVSRQQIDQFSKENNFIGWTETSVKENININESMRVLIERMMASR 177

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148233848|ref|NP_001085684.1| MGC80435 protein [Xenopus laevis] gi|49118197|gb|AAH73193.1| MGC80435 protein [Xenopus laevis]

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 116/173 (67%), Gaps = 2/173 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDSTVGKTS +Q +V + F  +YK T+GVDF+ K++         V+LQ+WDIA
Sbjct: 8   FKVLVVGDSTVGKTSLLQRYVHDVFGKDYKMTMGVDFALKVVQWSD--AETVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+ +  C+IMFDLTN +SF +   WK DLD+K  L NG  +PC+LLA+
Sbjct: 66  GQERFASMTRLYYKQASACVIMFDLTNAESFRNCQMWKDDLDNKVTLPNGDFVPCILLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           KCDL    V   +I+    + NF+ W E S KE++ I +SM  L+ R++ SK+
Sbjct: 126 KCDLSPWAVSREQIDQFSKENNFIGWTETSVKENININESMRVLIGRMMASKQ 178

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291402521|ref|XP_002717602.1| PREDICTED: RAB7, member RAS oncogene family-like 1 isoform 1 [Oryctolagus cuniculus]

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 119/179 (66%), Gaps = 4/179 (2%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct: 8   FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDIA 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct: 66  GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           KCDL    V  ++I+    +  F  W E S KE+  I ++M  L+++++ + +  EEAV
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSK--EEAV 182

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
UNIPROTKB|O14966	203	RAB7L1 "Ras-related protein Ra	0.369	0.822	0.449	2.6e-38
UNIPROTKB|F1P9G2	225	RAB7L1 "Uncharacterized protei	0.378	0.76	0.439	2.6e-38
UNIPROTKB|I3LHE8	203	RAB7L1 "Uncharacterized protei	0.382	0.852	0.428	3.4e-38
UNIPROTKB|F1N9R7	193	RAB7L1 "Uncharacterized protei	0.373	0.875	0.438	3.4e-38
UNIPROTKB|A5PJV4	203	RAB7L1 "RAB7L1 protein" [Bos t	0.378	0.842	0.433	4.3e-38
UNIPROTKB|Q13637	225	RAB32 "Ras-related protein Rab	0.413	0.831	0.393	8e-37
MGI|MGI:2385107	204	Rab7l1 "RAB7, member RAS oncog	0.378	0.838	0.433	1.7e-36
RGD|620892	204	Rab7l1 "RAB7, member RAS oncog	0.378	0.838	0.433	1.7e-36
UNIPROTKB|F1S747	226	RAB32 "Ras-related protein Rab	0.422	0.845	0.375	3.5e-36
UNIPROTKB|Q06AU5	226	RAB32 "Ras-related protein Rab	0.422	0.845	0.375	5.7e-36

UNIPROTKB|O14966 RAB7L1 "Ras-related protein Rab-7L1" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 76/169 (44%), Positives = 114/169 (67%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L    Y    V+LQ+WDIA
Sbjct:     8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDY--EIVRLQLWDIA 65

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
             KCDL    V  ++I+    +  F  W E S KE+  I ++M  L+++++
Sbjct:   126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|F1P9G2 RAB7L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 76/173 (43%), Positives = 115/173 (66%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct:    30 FKVLVVGDAAVGKTSLVQRYSQDSFQQHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 87

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+++  CIIMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct:    88 GQERFTSMTRLYYRDASACIIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 147

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
             KCDL    V  ++++    +  F  W E S KE+  I ++M  L+++++ + R
Sbjct:   148 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 200

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|I3LHE8 RAB7L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 75/175 (42%), Positives = 116/175 (66%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct:     8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEVVRLQLWDIA 65

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGGPVPCLLLAN 125

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
             KCDL    V  ++++    +  F  W E S KE+  I ++M  L+++++ + + E
Sbjct:   126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSKEE 180

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1N9R7 RAB7L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 75/171 (43%), Positives = 115/171 (67%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+TVGKTS VQ +  + F  +YK+TVGVDF+ K++   +     V+LQ+WDIA
Sbjct:    22 FKVLVVGDATVGKTSLVQRYANDSFNRHYKSTVGVDFALKVVQWSE--SETVRLQLWDIA 79

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+ +  C+IMFD+TN  +F +  +WK DLDSK  L +G+ +PCLLLA+
Sbjct:    80 GQERFTSMTRLYYREASACVIMFDVTNVSTFSNSQKWKQDLDSKLTLPDGSPVPCLLLAN 139

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
             KCDL    V   E++    +  F  W+E S KE+  I +SM  L+++++ S
Sbjct:   140 KCDLSPWAVTREEVDRFSKENGFSGWVETSVKENKNINESMRVLIEKMMSS 190

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|A5PJV4 RAB7L1 "RAB7L1 protein" [Bos taurus (taxid:9913)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 75/173 (43%), Positives = 115/173 (66%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct:     8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L NG  +PCLLLA+
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGEPVPCLLLAN 125

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
             KCDL    V  ++++    +  F  W E S KE+  I ++M  L+++++ + R
Sbjct:   126 KCDLSPWAVSRDQVDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMSNSR 178

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q13637 RAB32 "Ras-related protein Rab-32" [Homo sapiens (taxid:9606)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 78/198 (39%), Positives = 132/198 (66%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
             + +L+ G+  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L+   +  R  V+LQ+WDI
Sbjct:    26 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 82

Query:   300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
             AGQ+R+  M+RVYY+ + G  ++FD++   +FE+V++WK DLDSK  L NG+ +P +LLA
Sbjct:    83 AGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA 142

Query:   360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM---E 415
             +KCD   D     ++++  C ++ F  W E S+K+++ IE++  FLV++I+ + +    E
Sbjct:   143 NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNE 202

Query:   416 EEAVERKSSIRLSEETLR 433
             E  V++   I+L +ETLR
Sbjct:   203 ENDVDK---IKLDQETLR 217

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0090382 "phagosome maturation" evidence=IMP

MGI|MGI:2385107 Rab7l1 "RAB7, member RAS oncogene family-like 1" [Mus musculus (taxid:10090)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 75/173 (43%), Positives = 114/173 (65%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct:     8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L +G  +PCLLLA+
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
             K DL    V  ++I+    +  F  W E S KE+  I ++M  LV++++ + R
Sbjct:   126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|620892 Rab7l1 "RAB7, member RAS oncogene family-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 75/173 (43%), Positives = 114/173 (65%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + +L+ GD+ VGKTS VQ + Q+ F  +YK+TVGVDF+ K+L         V+LQ+WDIA
Sbjct:     8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSD--SEMVRLQLWDIA 65

Query:   301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             GQ+R+  M+R+YY+++  C+IMFD+TN  +F +  +WK DLDSK  L +G  +PCLLLA+
Sbjct:    66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125

Query:   361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
             K DL    V  ++I+    +  F  W E S KE+  I ++M  LV++++ + R
Sbjct:   126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSR 178

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1S747 RAB32 "Ras-related protein Rab-32" [Sus scrofa (taxid:9823)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 74/197 (37%), Positives = 131/197 (66%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
             + +L+ G+  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L+   +  R  V+LQ+WDI
Sbjct:    28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84

Query:   300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
             AGQ+R+  M+RVYY+ + G +++FD++   +FE+V++WK+DLDSK  L NG+ +P +LLA
Sbjct:    85 AGQERFGNMTRVYYKEAVGALVVFDISRGSTFEAVLKWKNDLDSKVHLPNGSPIPAVLLA 144

Query:   360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
             +KCD   D     ++++  C ++ F  W E S+K+++ I+++  FLV+ I+ + +    +
Sbjct:   145 NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQ-SFPS 203

Query:   419 VERKSSIRLSEETLRDD 435
              E    I+L EET++ +
Sbjct:   204 EENDGRIKLDEETMKKE 220

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q06AU5 RAB32 "Ras-related protein Rab-32" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 74/197 (37%), Positives = 130/197 (65%)

Query:   241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP-VKLQIWDI 299
             + +L+ G+  VGKTS ++ +V   F  +Y+ T+GVDF+ K+L+   +  R  V+LQ+WDI
Sbjct:    28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLN---WDSRTLVRLQLWDI 84

Query:   300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
             AGQ+R+  M+RVYY+ + G +++FD++    FE+V++WK+DLDSK  L NG+ +P +LLA
Sbjct:    85 AGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLA 144

Query:   360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
             +KCD   D     ++++  C ++ F  W E S+K+++ I+++  FLV+ I+ + +    +
Sbjct:   145 NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANHQ-SFPS 203

Query:   419 VERKSSIRLSEETLRDD 435
              E    I+L EET++ +
Sbjct:   204 EENDGRIKLDEETMKKE 220

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0090382 "phagosome maturation" evidence=ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	452
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-63
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-53
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-50
pfam00071	162	pfam00071, Ras, Ras family	4e-39
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	8e-35
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-34
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-31
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-30
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-30
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-30
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-30
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-29
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	5e-29
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-28
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-28
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-28
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-27
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-27
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-26
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-26
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-25
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-25
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-24
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-23
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-23
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-23
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-22
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-22
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-22
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-22
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-22
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-21
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-21
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-21
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	6e-21
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-20
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-20
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-19
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-19
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-19
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-18
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-18
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-18
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-18
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	9e-18
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-17
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	7e-17
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	9e-17
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-16
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-16
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-15
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-15
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	6e-15
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-15
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-14
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-14
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-14
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-14
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	9e-14
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-13
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-13
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-13
pfam00071	162	pfam00071, Ras, Ras family	3e-13
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-13
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-13
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	9e-13
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-12
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-12
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-12
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-12
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-12
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-12
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-12
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-11
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-11
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-11
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-11
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-11
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-11
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	9e-11
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-10
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-10
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-10
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-10
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-10
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-10
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-09
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-09
pfam00071	162	pfam00071, Ras, Ras family	2e-09
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-09
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-09
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-09
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-09
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-09
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-09
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	9e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	9e-09
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-08
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-08
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-08
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	5e-08
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-08
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-08
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-08
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-08
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-07
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-07
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-07
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-07
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-07
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-07
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-07
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	4e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-07
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	6e-07
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-07
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-06
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-06
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-06
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-06
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-06
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-06
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-06
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-06
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	5e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	6e-06
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	6e-06
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	6e-06
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	6e-06
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	7e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	9e-06
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-05
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-05
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-05
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-05
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-05
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-05
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-05
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-05
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-05
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	7e-05
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-04
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-04
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-04
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-04
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-04
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-04
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-04
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-04
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	7e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	7e-04
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	0.001
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	0.001
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	0.002
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.002
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	0.002
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	0.002
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	0.002
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.002
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.002
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	0.003
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	0.003
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	0.003
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	0.003
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	0.003
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	0.003
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	0.003
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	0.004
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	0.004

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  202 bits (515), Expect = 6e-63
 Identities = 75/171 (43%), Positives = 115/171 (67%), Gaps = 4/171 (2%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GD  VGKTS ++ +V   F  +YK T+GVDF+ K++         V+LQ+WDIA
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDP--NTVVRLQLWDIA 58

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  M+RVYY+ + G II+FD+T   +FE+V++WK DLDSK  L NG  +P LLLA+
Sbjct: 59  GQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLAN 118

Query: 361 KCDLPDRQVEIN--EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCDL   ++  +  +++  C +  F+ W E S+KE++ IE++M FLV  I+
Sbjct: 119 KCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  174 bits (445), Expect = 4e-53
 Identities = 62/165 (37%), Positives = 102/165 (61%), Gaps = 9/165 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS VGKTS +  FV NKF +NYK+T+GVDF +K +   +  G+ VKLQIWD AGQ
Sbjct: 3   IVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTI---EVDGKKVKLQIWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+TNR+SFE++ +W ++L      +    +P +L+ +K 
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPN----IPIILVGNKS 115

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
           DL D RQV   E +    +   + + E S+K    ++++   L  
Sbjct: 116 DLEDERQVSTEEAQQFAKENG-LLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  168 bits (428), Expect = 1e-50
 Identities = 60/168 (35%), Positives = 100/168 (59%), Gaps = 9/168 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS VGK+S +  F   KF + YK+T+GVDF TK +      G+ VKLQIWD AGQ
Sbjct: 3   IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE---VDGKRVKLQIWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G ++++D+TNR+SFE++  W  +L      +    +  +L+ +K 
Sbjct: 60  ERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPN----VVIMLVGNKS 115

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL + RQV   E EA   ++  + + E S+K +  +E++   L   I+
Sbjct: 116 DLEEQRQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEAFEELAREIL 162

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  138 bits (350), Expect = 4e-39
 Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 9/168 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGK+S +  F QNKF + Y  T+GVDF TK +      G+ VKLQIWD AGQ
Sbjct: 2   LVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIE---VDGKTVKLQIWDTAGQ 58

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +  +YY+ + G ++++D+T+R SFE+V +W  ++           +P +L+ +KC
Sbjct: 59  ERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLVGNKC 114

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL D R V   E EA+  +     ++E S+K +  +E++   L   I+
Sbjct: 115 DLEDQRVVSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  127 bits (320), Expect = 8e-35
 Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 4/158 (2%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK ++      R V LQIWD AGQ
Sbjct: 3   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT---VDDRLVTLQIWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C++++D+TN KSFES+  W+ +   +    +    P ++L +K 
Sbjct: 60  ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           DL   RQV   + +  C     + + E S+KE + ++ 
Sbjct: 120 DLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQ 157

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  126 bits (317), Expect = 2e-34
 Identities = 61/160 (38%), Positives = 96/160 (60%), Gaps = 8/160 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGKT  VQ F    F +   NT+GVDF+ K L  +   G+ VKLQIWD A
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQ---GKRVKLQIWDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +++ YY++++G II +D+T R SFESV  W  +++        + +  LL+ +
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGN 116

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           KCDL + R+V   E   +   Y  ++ +E S+KE   +E+
Sbjct: 117 KCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEE 156

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  119 bits (301), Expect = 1e-31
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 28/216 (12%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDSTVGK+S ++ F + +F +    TVGVDF ++L+  +   G  +KLQ+WD A
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP--GVRIKLQLWDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW-----KHDLDSKCILDNGAMLPC 355
           GQ+R+  ++R YY+NS G +++FD+TNR+SFE V  W      H    + +         
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVF-------- 112

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           +L+  KCDL   RQV   E E +  +   M +IE S++    +E++   L   I    + 
Sbjct: 113 ILVGHKCDLESQRQVTREEAEKLA-KDLGMKYIETSARTGDNVEEAFELLTQEIYERIKR 171

Query: 415 EEEAVE-----------RKSSIRLSEETLRDDQPKK 439
            E                  +  L E +     P+K
Sbjct: 172 GELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEK 207

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  115 bits (291), Expect = 1e-30
 Identities = 52/167 (31%), Positives = 98/167 (58%), Gaps = 9/167 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ GDS VGK+  +  F ++ F  ++ +T+G+DF  + +   +  G+ +KLQIWD AGQ
Sbjct: 6   LLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTI---ELDGKKIKLQIWDTAGQ 62

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ KSFE++  W  ++D             +L+ +KC
Sbjct: 63  ERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHA--SEDVER--MLVGNKC 118

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           D+ + R V   E EA+  +Y    ++E S+K ++ +E++   L   I
Sbjct: 119 DMEEKRVVSKEEGEALAREYGI-KFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  115 bits (290), Expect = 1e-30
 Identities = 54/173 (31%), Positives = 102/173 (58%), Gaps = 17/173 (9%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGK++ +  F +N+F  + K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTI---QIDGKTIKAQIWDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDL----DSKCILDNGAMLPCL 356
           GQ+RY  ++  YY+ + G ++++D+T + +FE+V +W  +L    DS  ++        +
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVI--------M 112

Query: 357 LLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           L+ +K DL   R V   E +A   +   +S+IE S+ +   +E++   L+  I
Sbjct: 113 LVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  115 bits (290), Expect = 2e-30
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 9/170 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G+  VGKTS V  +V+NKF + +++T    F  K ++    GG+ + L IWD A
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI---GGKRIDLAIWDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  +  +YY+++DG I+++D+T+  SF+ V +W  +L  K +  N   L  +++ +
Sbjct: 58  GQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKEL--KQMRGNNISL--VIVGN 113

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           K DL   R V  +E E            E S+K    IE+    L  R+I
Sbjct: 114 KIDLERQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  114 bits (287), Expect = 4e-30
 Identities = 54/168 (32%), Positives = 98/168 (58%), Gaps = 7/168 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             IL+ GDS VGK+S +  F  + F ++  +T+GVDF  K +      G+ VKL IWD A
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTV---TVDGKKVKLAIWDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T R +F+++  W ++LD+     +      +L+ +
Sbjct: 58  GQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVK---MLVGN 114

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K D  +R+V   E +    ++N M +IE S+K  + ++ +   LV++I
Sbjct: 115 KIDKENREVTREEGQKFARKHN-MLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  111 bits (280), Expect = 3e-29
 Identities = 51/153 (33%), Positives = 90/153 (58%), Gaps = 9/153 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  GD +VGKTS +  F+ + F + Y+ T+G+DF +K +       + V+LQ+WD A
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMY---VDDKTVRLQLWDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   Y ++S   ++++D+TNR+SF++  +W  D+      + G  +  +L+ +
Sbjct: 58  GQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDV----RDERGNDVIIVLVGN 113

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQV   E E    + N M +IE S+K
Sbjct: 114 KTDLSDKRQVSTEEGEKKAKENNAM-FIETSAK 145

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  111 bits (280), Expect = 5e-29
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 14/180 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------GRPVKLQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G          V LQ
Sbjct: 7   LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQ 66

Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AGQ+R+  ++  +++++ G ++MFDLT+ +SF +V  W   L +    +N  ++  
Sbjct: 67  LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLI 126

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
               +K DLPD R+V   +   +  +Y  + + E S+     +E ++  L+D I+  KRM
Sbjct: 127 ---GNKADLPDQREVSERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KRM 180

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  110 bits (277), Expect = 1e-28
 Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 15/164 (9%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ VKLQIWD A
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTVKLQIWDTA 59

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLD---SKCILDNGAMLPCLL 357
           GQ+R+  ++  YY+ + G II++D+T+++SF +V QW  ++D   S+ +         LL
Sbjct: 60  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK-------LL 112

Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
           + +KCDL D + V+  E +    +   + ++E S+K    +E++
Sbjct: 113 VGNKCDLTDKKVVDYTEAKEFADELG-IPFLETSAKNATNVEEA 155

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  110 bits (277), Expect = 3e-28
 Identities = 60/199 (30%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +LI GDS VGK+S +  F  N F  +Y  T+GVDF  + +      G  VKLQIWD A
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE---INGERVKLQIWDTA 63

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+TN +SF +V +W  +++  C          +L+ +
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCK-----VLVGN 118

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
           K D P+R+V   E          +S  E S+KE++ +E+  N + + ++ +K  +  A +
Sbjct: 119 KNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK-KDNLAKQ 177

Query: 421 RKSSIRLSEETLRDDQPKK 439
           ++       +  ++ + KK
Sbjct: 178 QQQQQNDVVKLPKNSKRKK 196

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  108 bits (272), Expect = 5e-28
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 12/174 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
           + +LI G+S+VGKTS++  +  + F   + +TVG+DF  K +  + K     +KLQIWD 
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKR----IKLQIWDT 57

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+RY  ++  YY+ + G I+M+D+TN +SF +V  W   + +    DN  +   +L+ 
Sbjct: 58  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV---ILVG 113

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           +KCD+ D R V       +  Q  F  + E S+KE++ ++     LVD IIC K
Sbjct: 114 NKCDMEDERVVSAERGRQLADQLGF-EFFEASAKENINVKQVFERLVD-IICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  106 bits (267), Expect = 2e-27
 Identities = 51/166 (30%), Positives = 96/166 (57%), Gaps = 8/166 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G+  VGK+S +Q FV+  F  +YK T+GVDF  K +  ++     V+L +WD AGQ
Sbjct: 3   VIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ-SDEDVRLMLWDTAGQ 61

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + +  +++ YY+ +  CI++F  T+R+SFE++  WK  ++++C       +P +L+ +K 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKI 116

Query: 363 DLPDRQVEIN-EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
           DL D+ V  N E EA+  +   +     S K+   + +   +L ++
Sbjct: 117 DLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  106 bits (266), Expect = 4e-27
 Identities = 52/153 (33%), Positives = 90/153 (58%), Gaps = 15/153 (9%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           LI G +  GK+  +  F++NKF  +  +T+GV+F ++++     GG+ VKLQIWD AGQ+
Sbjct: 4   LIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV---NVGGKSVKLQIWDTAGQE 60

Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLLLAS 360
           R+  ++R YY+ + G ++++D+T+R+SF ++  W  D   L S  I+        +L+ +
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIV-------IILVGN 113

Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL  DR+V   E      Q N + ++E S+ 
Sbjct: 114 KKDLEDDREVTFLEASRFA-QENGLLFLETSAL 145

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  104 bits (262), Expect = 1e-26
 Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 3/166 (1%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V LQIWD AGQ
Sbjct: 8   VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTLQIWDTAGQ 64

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ SD C++ F + + +SF+++  WK +      +      P ++L +K 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           D+P+RQV   E +A C       + E S+K+   +  +    V R+
Sbjct: 125 DIPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  103 bits (259), Expect = 4e-26
 Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 17/158 (10%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
            + +++ GDS+VGK+S V  FV+N+F +N ++T+G  F T+ +         VK +IWD 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTV---NLDDTTVKFEIWDT 57

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDL----DSKCILDNGAMLPC 355
           AGQ+RY  ++ +YY+ +   I+++D+T+ +SFE    W  +L        ++        
Sbjct: 58  AGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVI-------- 109

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
            L  +K DL   RQV   E +      N + ++E S+K
Sbjct: 110 ALAGNKADLESKRQVSTEEAQEYA-DENGLLFMETSAK 146

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  101 bits (253), Expect = 2e-25
 Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G   VGK++    FV  +F++ Y  T+  D   K +      G    L I D AGQ
Sbjct: 2   LVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVV---DGETYTLDILDTAGQ 57

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + +  M   Y +N DG I+++ +T+R+SFE +   K+  +    + +   +P +L+ +KC
Sbjct: 58  EEFSAMRDQYIRNGDGFILVYSITSRESFEEI---KNIREQILRVKDKEDVPIVLVGNKC 114

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DL + RQV   E EA+  ++    ++E S+K ++ I++  N LV  I
Sbjct: 115 DLENERQVSTEEGEALAEEWG-CPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  101 bits (253), Expect = 8e-25
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 8/133 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD  VGKT+ +   V ++F + Y  T+G     K     +   R +KLQ+WD AGQ
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT---IEPYRRNIKLQLWDTAGQ 64

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +   YY+ ++G +I++D T R+S + + + W  +L      D    +P LL+ +K
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD----VPILLVGNK 120

Query: 362 CDLPDRQVEINEI 374
            DL D Q    EI
Sbjct: 121 IDLFDEQSSSEEI 133

Length = 219

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 98.3 bits (245), Expect = 4e-24
 Identities = 46/158 (29%), Positives = 90/158 (56%), Gaps = 9/158 (5%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           +I GD+ VGK+  +  F   +F   +  T+GV+F  ++++     G+ +KLQIWD AGQ+
Sbjct: 8   IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDGKQIKLQIWDTAGQE 64

Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363
            +  ++R YY+ + G ++++D+T R++F  +  W  D        + + +  +L+ +KCD
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSNSNMTIMLIGNKCD 120

Query: 364 LP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
           L   R+V   E EA   ++  + ++E S+K    +E++
Sbjct: 121 LESRREVSYEEGEAFAREHGLI-FMETSAKTASNVEEA 157

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 96.9 bits (241), Expect = 3e-23
 Identities = 56/180 (31%), Positives = 105/180 (58%), Gaps = 19/180 (10%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ L   +  G+ VK QIWD A
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTL---QVEGKTVKAQIWDTA 69

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDL----DSKCILDNGAMLPCL 356
           GQ+RY  ++  YY+ + G ++++D+T R++F++V +W  +L    DS  ++        +
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI--------M 121

Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI--ICSKR 413
           +  +K DL   R V   + +A+  +   +S++E S+ E   +E +   ++  I  I SK+
Sbjct: 122 MAGNKSDLNHLRSVAEEDGQALAEKEG-LSFLETSALEATNVEKAFQTILLEIYHIISKK 180

Length = 216

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 96.0 bits (239), Expect = 6e-23
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 20/204 (9%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             I++ GD   GKTS ++ F Q  F  +YK T+G+DF ++ ++    G   V LQ+WDI 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLP--GSLNVTLQVWDIG 58

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL-A 359
           GQ     M   Y   +    +++D+TN +SFE++  W   +    + +     P ++L  
Sbjct: 59  GQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKK--VNEESETKPKMVLVG 116

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS------K 412
           +K DL   RQV   +      + +  S I VS+K      D +     RI          
Sbjct: 117 NKTDLEHNRQVTAEKHARFAQENDMES-IFVSAKTG----DRVFLCFQRIAAELLGVKLS 171

Query: 413 RMEEEAVER--KSSI-RLSEETLR 433
           + E E  +R  K+ + R SE TLR
Sbjct: 172 QAELEQSQRVVKADVSRYSERTLR 195

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 94.7 bits (236), Expect = 6e-23
 Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 10/152 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L  H   G   ++  +WD A
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLDFHTNRG--KIRFNVWDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY      IIMFD+T+R ++++V  W  DL   C  +N   +P +L  +
Sbjct: 58  GQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--EN---IPIVLCGN 112

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           K D+ DR+V+  +I    H+   + + E+S+K
Sbjct: 113 KVDIKDRKVKPKQITF--HRKKNLQYYEISAK 142

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    F+Q  F+D+Y  T+  D   K +      G    L I D A
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIE---IDGEVCLLDILDTA 56

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH------DLDSKCILDNGAMLP 354
           GQ+ +  M   Y +  +G ++++ +T+R+SFE + +++       D D          +P
Sbjct: 57  GQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD---------VP 107

Query: 355 CLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            +L+ +KCDL   R V   E + +  Q+    ++E S+KE + ++++   LV  I
Sbjct: 108 IVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 21/177 (11%)

Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
             Y +++ G   VGK++    FVQ  F+D Y  T+  D   K +      G    L I D
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIE---IDGEVCLLDILD 56

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH------DLDSKCILDNGAM 352
            AGQ+ +  M   Y +  +G ++++ +T+R+SFE + +++       D D          
Sbjct: 57  TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD--------- 107

Query: 353 LPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +P +L+ +KCDL + R V   E + +  Q+    ++E S+KE + ++++   LV  I
Sbjct: 108 VPIVLVGNKCDLENERVVSTEEGKELARQWG-CPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 94.4 bits (235), Expect = 2e-22
 Identities = 47/156 (30%), Positives = 88/156 (56%), Gaps = 10/156 (6%)

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           ++P + +++ GD  VGKT++V+  +  +F   Y  T+GV+    L  +   G  P+   +
Sbjct: 6   EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVH-PLKFYTNCG--PICFNV 62

Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+++  +   YY      IIMFD+T+R ++++V  W  D+   C  +N   +P +
Sbjct: 63  WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--EN---IPIV 117

Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           L+ +K D+ DRQV+  +I    H+   + + ++S+K
Sbjct: 118 LVGNKVDVKDRQVKARQI--TFHRKKNLQYYDISAK 151

Length = 215

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 92.0 bits (228), Expect = 5e-22
 Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 9/162 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGKT  +  F  N+F  ++ +T+GVDF  K +   +  G  V++QIWD A
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  +++ YY+ + G  +++D+++ +S++ +++W  D+D       G      L+ +
Sbjct: 58  GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDE--YAPEGVQKI--LIGN 113

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K D    RQV   +   +  +Y  M + E S+  +  I++S 
Sbjct: 114 KADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 91.4 bits (227), Expect = 9e-22
 Identities = 48/158 (30%), Positives = 89/158 (56%), Gaps = 9/158 (5%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           +I GD  VGK+  +  F + KF+ +  +T+GV+F T+++   +  G+ +KLQIWD AGQ+
Sbjct: 6   IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVNGQKIKLQIWDTAGQE 62

Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363
           R+  ++R YY+ + G ++++D+T R ++  +  W  D  +   L N   +   L+ +K D
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN---LTNPNTV-IFLIGNKAD 118

Query: 364 LPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
           L   R V   E +    +   + ++E S+K    +ED+
Sbjct: 119 LEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVEDA 155

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 91.3 bits (227), Expect = 1e-21
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 19/160 (11%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
            + I++ GDS VGKT     F   +F +  + T+GVDF  + +   +  G  +K+Q+WD 
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTV---EIDGERIKVQLWDT 58

Query: 300 AGQDRY-ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW-----KHDLDSKCILDNGAML 353
           AGQ+R+   M + YY+N    + ++D+TN  SF S+  W     +H L           +
Sbjct: 59  AGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL--------PNEV 110

Query: 354 PCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           P +L+ +KCDL +  QV  +  +     ++ M   E S+K
Sbjct: 111 PRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAK 149

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 17/141 (12%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD +VGKT  +  F ++ F  NYK T+GVDF    +   +  G P  LQ+WD AGQ
Sbjct: 3   VIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFE---MERFEVLGVPFSLQLWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW-----KHDLDSKCILDNGAMLPCLL 357
           +R+ C++  YY+ +   II+FDLT+  S E   QW     K +  S  +L         L
Sbjct: 60  ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLL--------FL 111

Query: 358 LASKCDL-PDRQVEINEIEAV 377
           + +K DL    Q  + E +A+
Sbjct: 112 VGTKKDLSSPAQYALMEQDAI 132

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 90.3 bits (224), Expect = 4e-21
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 4/102 (3%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
           +++ G  +VGKTS V+ +V ++FL   Y+NT+G  F  K +     G R V L IWD AG
Sbjct: 3   VVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV---VGERVVTLGIWDTAG 59

Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS 343
            +RY  MSR+YY+ +   I+ +DLT+  SFE    W  +L +
Sbjct: 60  SERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN 101

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 90.1 bits (223), Expect = 6e-21
 Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 8/184 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I G   VGKTS ++ F  + F +  K+TVGVDF  K +  +   G+ ++LQIWD AGQ
Sbjct: 3   VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR---GKKIRLQIWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+++ G I+++D+T +++F+ + +W   +D     D  A L  LL+ +K 
Sbjct: 60  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AEL--LLVGNKL 115

Query: 363 DL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           D   DR++   + E    Q   M + E S+K++  +++    LVD I+    ++    E 
Sbjct: 116 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNEL 175

Query: 422 KSSI 425
            +SI
Sbjct: 176 SNSI 179

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 88.3 bits (219), Expect = 4e-20
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
            +  P++ ++I GD   GKT++V+  +  +F   Y+ T+GV+    L      G   ++ 
Sbjct: 8   TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP-LDFFTNCG--KIRF 64

Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
             WD AGQ+++  +   YY +    IIMFD+T R ++++V  W  DL   C  +N   +P
Sbjct: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN---IP 119

Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            +L  +K D+ +RQV+  ++    H+   + + E+S+K +   E    +L  ++
Sbjct: 120 IVLCGNKVDVKNRQVKAKQVTF--HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 88.1 bits (218), Expect = 4e-20
 Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 9/158 (5%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           +I GD+ VGK+  +  F   +F   +  T+GV+F  ++++      +P+KLQIWD AGQ+
Sbjct: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDNKPIKLQIWDTAGQE 66

Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD 363
            +  ++R YY+ + G ++++D+T R++F  +  W  D          A +  +L+ +KCD
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA----NANMTIMLIGNKCD 122

Query: 364 LPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
           L  R+ V   E E    ++  + ++E S+K    +E++
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEA 159

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 84.2 bits (208), Expect = 4e-19
 Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ G++ VGKT  V+ F Q  F      T+GVDF  K +   +  G  +KLQIWD A
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EIKGEKIKLQIWDTA 64

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +++ YY++++  I+ +D+T  +SF  + +W  +++      N  ++  +L+ +
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA---NNKVIT-ILVGN 120

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
           K DL +R+    +          M ++E S+KE   +E
Sbjct: 121 KIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVE 158

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 83.6 bits (207), Expect = 5e-19
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I D A
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH------DLDSKCILDNGAMLP 354
           GQ+ Y  M   Y +  +G + +F + +RKSFE +  ++       D D          +P
Sbjct: 58  GQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDD---------VP 108

Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            +L+ +KCDL  R V   + + +   Y  + +IE S+K    +E++   LV  I
Sbjct: 109 MVLVGNKCDLAARTVSTRQGQDLAKSYG-IPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 83.8 bits (207), Expect = 8e-19
 Identities = 50/160 (31%), Positives = 92/160 (57%), Gaps = 10/160 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           + +++ GDS VGKT  +  F    FL  ++  TVG+ F+ K+++     G  VKLQIWD 
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVT---VDGVKVKLQIWDT 57

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  ++  YY+++   ++++D+TN+ SF+++  W  ++      D   M    LL 
Sbjct: 58  AGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIM----LLG 113

Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
           +K D+  +R V+  + E +  +Y  + ++E S+K  L +E
Sbjct: 114 NKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLNVE 152

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 83.6 bits (206), Expect = 2e-18
 Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 13/188 (6%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           ++ IL+ GDS VGK+S +  F+ +  +++   T+GVDF  K L+    GG+ +KL IWD 
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLT---VGGKRLKLTIWDT 69

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLL 358
           AGQ+R+  ++  YY+N+ G I+++D+T R++F ++   W  +++      +      +L+
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK---MLV 126

Query: 359 ASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
            +K D   +R V   E  A+  ++  + ++E S+K    +E     L  +I+    + EE
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTRENVEQCFEELALKIMEVPSLLEE 185

Query: 418 ---AVERK 422
              AV+R 
Sbjct: 186 GSTAVKRN 193

Length = 211

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 82.4 bits (203), Expect = 3e-18
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
           GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P++  +WD AGQ+++ 
Sbjct: 2   GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG--PIRFNVWDTAGQEKFG 58

Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
            +   YY      IIMFD+T R ++++V  W  DL   C  +N   +P +L  +K D+ D
Sbjct: 59  GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--EN---IPIVLCGNKVDVKD 113

Query: 367 RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           R+V+   I    H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 114 RKVKAKSI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 81.4 bits (201), Expect = 4e-18
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + GD  VGK++ VQ F  +   F  NY  T G D   K +         V+L I+D A
Sbjct: 3   CAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPD-TSDSVELFIFDSA 61

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ +  M    ++      +++D+TN  SF +  +W + + +     +G   P +L+ +
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTH---SHGLHTPGVLVGN 118

Query: 361 KCDLPDRQVEINEIEAVC-HQYNFMSWIEVSSKE 393
           KCDL DR+ E++  +A    Q N + + E S+KE
Sbjct: 119 KCDLTDRR-EVDAAQAQALAQANTLKFYETSAKE 151

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 80.1 bits (198), Expect = 8e-18
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 10/172 (5%)

Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           PTY +++ G   VGK++    F+Q+ F+ +Y  T+  D  TK     +  G+  +L I D
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTK---QCEIDGQWARLDILD 56

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
            AGQ+ +  M   Y +  +G +++F +T+R SFE V ++   +     + +    P +L+
Sbjct: 57  TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQI---LRVKDRDEFPMILV 113

Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
            +K DL   RQV   E + +  Q     +IE S+K+ + ++ + + LV R+I
Sbjct: 114 GNKADLEHQRQVSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLV-RVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (199), Expect = 9e-18
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD  VGKT  +  +  NKF   Y  TV  ++S  +       G+ V L +WD AGQ
Sbjct: 3   IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANV----TVDGKQVNLGLWDTAGQ 58

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y  +D  ++ F + +  SFE+V   W  ++  K    N    P +L+ +K
Sbjct: 59  EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEI--KHYCPNV---PIILVGTK 113

Query: 362 CDLPDRQVEI------------NEIEAVCHQYNFMSWIEVSSK 392
            DL D    +             E E +  +   + ++E S+ 
Sbjct: 114 IDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSAL 156

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 29/169 (17%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGKT  +  +  N F ++Y  TV  ++S  +    +  G+PV+L +WD AGQ
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADV----EVDGKPVELGLWDTAGQ 56

Query: 303 DRYICMSRV---YYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLL 358
           + Y    R+    Y ++D  +I F + +  SFE+V  +W  ++   C       +P +L+
Sbjct: 57  EDY---DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-----PNVPIILV 108

Query: 359 ASKCDLPDRQVEINEI-------------EAVCHQYNFMSWIEVSSKEH 394
            +K DL + +  + E+             +A+  +   + ++E S+   
Sbjct: 109 GTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQ 157

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 77.9 bits (191), Expect = 7e-17
 Identities = 46/131 (35%), Positives = 78/131 (59%), Gaps = 9/131 (6%)

Query: 263 NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIM 322
           + F +NY++T+G+DF +K L   +    PV+LQ+WD AGQ+R+  +   Y ++S   I++
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDE---GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVV 59

Query: 323 FDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQY 381
           +D+TNR+SFE+  +W  D+    + + G  +   L+ +K DL D R+V   E      +Y
Sbjct: 60  YDITNRQSFENTTKWIQDI----LNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEY 115

Query: 382 NFMSWIEVSSK 392
           N M + E S+K
Sbjct: 116 NTM-FHETSAK 125

Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GDS VGKTS +  FV NKF +NYK+T+GVDF +K +   +  G+ VKLQIWD
Sbjct: 3   IVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTI---EVDGKKVKLQIWD 55

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GDS VGK+S +  F   KF + YK+T+GVDF TK +      G+ VKLQIWD
Sbjct: 3   IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE---VDGKRVKLQIWD 55

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I + G  +VGK+S    FV+  F+++Y  T+   FS        Y G+   L+I D AGQ
Sbjct: 4   IAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS----KIITYKGQEYHLEIVDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN-GAM-LPCLLLAS 360
           D Y  + + Y     G I+++ +T+RKSFE VV+  +D     ILD  G   +P +L+ +
Sbjct: 60  DEYSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDK----ILDMLGKESVPIVLVGN 114

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   RQV   E + +   +   +++E S+KE+  +E++   L++ I
Sbjct: 115 KSDLHMERQVSAEEGKKLAESWG-AAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 42/171 (24%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y I++ G   VGK++    FVQN F+++Y  T+   +  ++    +  GR   L+I D A
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQV----EIDGRQCDLEILDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  M  +Y ++  G ++++ +T+  S   + + +  +     + +   +P +L+ +
Sbjct: 58  GTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQV---LRIKDSDNVPMVLVGN 114

Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
           K DL  DRQV   +  ++  Q+  + + E S+++   +++    LV +IIC
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC 165

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 34/134 (25%), Positives = 79/134 (58%), Gaps = 7/134 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++  G+S VGK+  ++ + + +F+  Y  T+G+D+  K +S +    + V++  +D++G 
Sbjct: 3   VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR---NKEVRVNFFDLSGH 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCLLLAS 360
             Y+ +   +Y+++ G ++++D+T+R+SFE++  W  ++  +    +G M  +  ++ A+
Sbjct: 60  PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEG-GPHGNMENIVVVVCAN 118

Query: 361 KCDLPD-RQVEINE 373
           K DL   R V  +E
Sbjct: 119 KIDLTKHRAVSEDE 132

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 71.8 bits (176), Expect = 6e-15
 Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 10/129 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK-KYGGRPVKLQIWDIAG 301
           I++ GDS VGK+  V+ F+ + +     +T    ++  L  H  K+ G+ + +  WD AG
Sbjct: 3   IILLGDSAVGKSKLVERFLMDGYEPQQLST----YALTLYKHNAKFEGKTILVDFWDTAG 58

Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q+R+  M   YY  +  CI++FD+T + +++++ +W  +L           +PC+++A+K
Sbjct: 59  QERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-----PEIPCIVVANK 113

Query: 362 CDLPDRQVE 370
            DL     +
Sbjct: 114 IDLDPSVTQ 122

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 72.3 bits (177), Expect = 7e-15
 Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK--LLSHKKYGGRPVKLQIWDIA 300
            L+ GDS VGK   +           Y   +G+D+ T   LL      GR VKLQ+WD +
Sbjct: 9   FLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-----GRRVKLQLWDTS 63

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ R+  + R Y + + G I+++D+TNR SF+ + +W  ++D     ++   +P +L+ +
Sbjct: 64  GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEID-----EHAPGVPKILVGN 118

Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVS 390
           +  L   RQV   + +A   + N M++ EVS
Sbjct: 119 RLHLAFKRQVATEQAQAYAER-NGMTFFEVS 148

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 24/175 (13%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           ++ G   VGK+S +   +  +     D    T   D   K L   K      KL + D  
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV-----KLVLVDTP 55

Query: 301 GQDRYICMSRV-----YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           G D +  + R        + +D  +++ D T+R+S E           K        +P 
Sbjct: 56  GLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK------EGIPI 109

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +L+ +K DL + R+VE         +   +   EVS+K    +++    L +++I
Sbjct: 110 ILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDE----LFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I + GD+ +GKTS +  +V+ +F + Y  T+GV+F  K +S     G  +   IWD+ GQ
Sbjct: 3   IGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTIS---IRGTEITFSIWDLGGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW 337
             +I M  +  +++   + MFDLT + +  S+ +W
Sbjct: 60  REFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEW 94

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
              I+I GD  VGK++ +   + NK  +  YK     ++ T ++   +  G+  K  + D
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVI---EEDGKTYKFNLLD 57

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLL 357
            AGQ+ Y  + R+YY+  +  + +FD+       E +++ K   +     ++G   P +L
Sbjct: 58  TAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILE-KQTKEIIHHAESGV--PIIL 114

Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFL 404
           + +K DL D +++ +       + N    I +S       E   N  
Sbjct: 115 VGNKIDLRDAKLKTHVAFLF-AKLNGEPIIPLS------AETGKNID 154

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           + +L+ GD  VGKTS ++ +V   F  +YK T+GVDF+ K++         V+LQ+WDI
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDP--NTVVRLQLWDI 57

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 68.6 bits (168), Expect = 9e-14
 Identities = 45/170 (26%), Positives = 91/170 (53%), Gaps = 11/170 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V+L I D A
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQLNILDTA 56

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLA 359
           GQ+ Y  +   Y+++ +G +++F +T+ +SF ++ +  +  L  K        +P LL+ 
Sbjct: 57  GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVK----EDDNVPLLLVG 112

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +KCDL D RQV + E   +  Q+  ++++E S+K    ++     LV  I
Sbjct: 113 NKCDLEDKRQVSVEEAANLAEQWG-VNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I + G S VGK++    F+  +F+  Y+  +   +S          G  V L+I D  GQ
Sbjct: 2   IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS----RQVTIDGEQVSLEIQDTPGQ 57

Query: 303 DRYICMSRV--YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
            +      +    + +DG ++++ +T+R SF+ V Q    +      D     P +L+ +
Sbjct: 58  QQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEI--PVILVGN 115

Query: 361 KCDLP-DRQVEINE 373
           K DL   RQV   E
Sbjct: 116 KADLLHSRQVSTEE 129

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F+D Y  T+  D   K +   +   +   L+I D A
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQI---EVDCQQCMLEILDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
           G +++  M  +Y +N  G  +++ +T ++SF  +     DL  + + + +   +P +L+ 
Sbjct: 58  GTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDL----QDLREQILRVKDTEDVPMILVG 113

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +KCDL D R V   E + +  Q+    ++E S+K  + +++    LV +I 
Sbjct: 114 NKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQIN 164

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FV   F++ Y  T+  DF  K +   +    P  L+I D A
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEI---EVDSSPSVLEILDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  M  +Y +N  G I+++ L N+++F+ +   +  +      +    +P +L+ +
Sbjct: 58  GTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK---VPIILVGN 114

Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL  +R+V   E  A+  ++    ++E S+K   M+ +    +V ++
Sbjct: 115 KVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           L+L+ GD  VGK+S +  F QNKF + Y  T+GVDF TK +      G+ VKLQIWD
Sbjct: 2   LVLV-GDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIE---VDGKTVKLQIWD 54

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 25/177 (14%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNT--------VGVDFSTKLLSHKKYGGRPV 292
           Y +++ G   VGK++    F+QN F+D Y  T          +D  T LL          
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLD--------- 56

Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
              I D AGQ+ Y  M   Y +   G + ++ +T+R SFE +  ++  +    + D    
Sbjct: 57  ---ILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILR--VKDKDR- 110

Query: 353 LPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +P +L+ +KCDL  +RQV   E + +   +  + ++E S+K+ + ++++   LV  I
Sbjct: 111 VPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 24/195 (12%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD   GKT  +  + Q  F + Y  TV  ++ T L       G+ ++L +WD AGQ
Sbjct: 6   IVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPN---GKIIELALWDTAGQ 62

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y + D  +I + + N  S ++V  +W  +++  C        P +L+  K
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC-----PGTPIVLVGLK 117

Query: 362 CDL-PDRQ------------VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            DL  D+             V   + E+V      +++IE S+K    +++  +  ++  
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAIN-- 175

Query: 409 ICSKRMEEEAVERKS 423
           +   +    A ++K 
Sbjct: 176 VALSKSGRAARKKKK 190

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 65.6 bits (161), Expect = 9e-13
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
            KI++IGDS VGKTS +  FV NKF +NYK+T+GVDF +K
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSK 40

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
            KI++IGDS VGK+S +  F   KF + YK+T+GVDF TK + 
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE 43

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK ++      R V LQIWD
Sbjct: 3   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT---VDDRLVTLQIWD 55

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
            K+LVIGD  VGKTS ++ +V   F  +YK T+GVDF+ K++  
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEW 44

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y I++ G   VGK++    F+ + F D +  T+   + T+     +    P  L I D A
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQA----RIDNEPALLDILDTA 58

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ  +  M   Y +  +G II + +T+R SF+   ++K  +    + ++   +P +L+ +
Sbjct: 59  GQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTED---IPLVLVGN 115

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           K DL   RQV   E   +  ++N   + E S+     I+D+ + LV  I   +R E    
Sbjct: 116 KVDLEQQRQVTTEEGRNLAREFN-CPFFETSAALRFYIDDAFHGLVREI---RRKESMPA 171

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 41/171 (23%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +  G+   L+I D A
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDGQQCMLEILDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
           G +++  M  +Y +N  G ++++ +T + +F  +     DL  + + + +   +P +L+ 
Sbjct: 58  GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVG 113

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +KCDL D R V   + + +  Q+   +++E S+K  + + +    LV +I 
Sbjct: 114 NKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKINVNEIFYDLVRQIN 163

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 63.0 bits (154), Expect = 6e-12
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +    +   +     T+G  F+ + + +K      VK  +WD+ GQ
Sbjct: 2   ILMLGLDGAGKTTILYKL-KLGEVVTTIPTIG--FNVETVEYKN-----VKFTVWDVGGQ 53

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + + YY+N+DG I + D ++R+  E      H L ++  L      P L+LA+K 
Sbjct: 54  DKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKG---APLLILANKQ 110

Query: 363 DLPD 366
           DLP 
Sbjct: 111 DLPG 114

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 26/142 (18%)

Query: 244 LITGDSTVGKTSYVQGFVQNKF--------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQ 295
           ++ GD  VGKT  +  +  N F         DNY   V VD            G+PV L 
Sbjct: 5   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD------------GKPVNLG 52

Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLP 354
           +WD AGQ+ Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P
Sbjct: 53  LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTP 107

Query: 355 CLLLASKCDLPDRQVEINEIEA 376
            +L+ +K DL D +  I +++ 
Sbjct: 108 IILVGTKLDLRDDKDTIEKLKE 129

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           YL  I++ GDS VGK++ +  F +N+F  + K+T+GV+F+T+ +   +  G+ +K QIWD
Sbjct: 2   YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTI---QIDGKTIKAQIWD 58

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 10/165 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G S VGKT+ V  F+  +F + Y  T+  DF  KL S +   G   +L I D +
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR---GEVYQLDILDTS 56

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDN----GAMLPC 355
           G   +  M R+     D  I++F L NR+SFE V + +   L++K  L N       +P 
Sbjct: 57  GNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM 116

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++  +K D    R+V+ +E+E +       ++ EVS+K++  +++
Sbjct: 117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDE 161

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           GD +VGKTS +  F+ + F + Y+ T+G+DF +K +       + V+LQ+WD 
Sbjct: 7   GDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMY---VDDKTVRLQLWDT 56

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 19/160 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKTS +  F +  F   Y+ TV  ++   +       G  V+L +WD AGQ
Sbjct: 3   VVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVD----GLAVELSLWDTAGQ 58

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + +  +  + Y ++   ++ F + N  S E+V  +W  ++   C    G  L  +L+A K
Sbjct: 59  EEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC---PGVKL--VLVALK 113

Query: 362 CDLPDRQVEI---------NEIEAVCHQYNFMSWIEVSSK 392
           CDL + + E           E  AV  + N   ++E S+K
Sbjct: 114 CDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAK 153

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 10/123 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS  GKT+ +Q F ++ F +NY  TV  +++       +   + ++L +WD +G 
Sbjct: 4   IVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASF----EVDKQRIELSLWDTSGS 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  +I FD++  ++ +SV+ +WK +     + +     P LL+  K
Sbjct: 60  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-----VREFCPNTPVLLVGCK 114

Query: 362 CDL 364
            DL
Sbjct: 115 SDL 117

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 61.0 bits (148), Expect = 7e-11
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKTS +  F   +F + Y  TV  ++ T      +  G+PV+L +WD AGQ
Sbjct: 4   LVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDC----RVDGKPVQLALWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y  +   +I F +    S E+V  +W  ++   C       +P +L+  K
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLK 114

Query: 362 CDL-----------PDRQVEINEIEAVCHQYNFMSWIEVSS 391
            DL            D  V I + + V        ++E S+
Sbjct: 115 KDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSA 155

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           IL+ GDS VGK+S +  F  + F ++  +T+GVDF  K +      G+ VKL IWD
Sbjct: 3   ILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTV---TVDGKKVKLAIWD 55

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +ILI GDS VGKT  VQ F    F +   NT+GVDF+ K L      G+ VKLQIWD
Sbjct: 6   IILI-GDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLE---IQGKRVKLQIWD 58

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           LK++++GDS VGKTS +  +V  KF + YK T+G DF TK
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 40

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
           GD  VGKTS +  +  N +   Y  T   +FS  +L      G+PV+LQ+ D AGQD + 
Sbjct: 7   GDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVD----GKPVRLQLCDTAGQDEFD 62

Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDL 364
            +  + Y ++D  ++ F + N  SF+++  +W  ++            P +L+ ++ DL
Sbjct: 63  KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADL 116

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GK+S +   V  +F        G   +   L      G    L IWD  G+
Sbjct: 2   VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTG---LLNIWDFGGR 58

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +       ++ + +D  ++++DLT+R+S   V +    L +  +   G  +P +L+ +K 
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPN--LRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           LI G +  GK+  +  F++NKF  +  +T+GV+F ++++     GG+ VKLQIWD
Sbjct: 4   LIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV---NVGGKSVKLQIWD 55

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 15/195 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY--GGRPVKLQIWDIA 300
           ++  G + VGKT+ +Q F+ + F   ++ TV      + L  K+Y   G  V + I D +
Sbjct: 2   LVFMGAAGVGKTALIQRFLYDTFEPKHRRTV------EELHSKEYEVAGVKVTIDILDTS 55

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCLLLA 359
           G   +  M ++  QN D   +++ + + +SFE V + + + L+ K        +P +++ 
Sbjct: 56  GSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVK----EDKFVPIVVVG 111

Query: 360 SKCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
           +K D L +RQVE  +  +         ++E S+K++  + +    L+ +      +   A
Sbjct: 112 NKIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWL-SPA 170

Query: 419 VERKSSIRLSEETLR 433
           + R+     SE   R
Sbjct: 171 LRRRRESAPSEIQRR 185

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 56.9 bits (138), Expect = 9e-10
 Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +L+ GDS VGK+  +  F ++ F  ++ +T+G+DF  + +   +  G+ +KLQIWD
Sbjct: 6   LLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTI---ELDGKKIKLQIWD 58

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 41/167 (24%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGKT+       N F++ Y  T+   +  +++      G+P  L++ D AGQ
Sbjct: 2   LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV----VDGQPCMLEVLDTAGQ 57

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + Y  +   + +  +G I+++ +T+R +FE V +++  +  +   ++ A +P +++ +KC
Sbjct: 58  EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQI-QRVKDESAADVPIMIVGNKC 116

Query: 363 D-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           D + +R+V   E  A+  +     +IE S+K ++ +E +   LV  +
Sbjct: 117 DKVYEREVSTEEGAALARRLG-CEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG--RPVKLQIWDIA 300
           +L+ GDS VGK+S V    +N+ L N   TVG     +  ++ +     +   +++WD+ 
Sbjct: 3   VLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDVG 62

Query: 301 GQ----DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW 337
           G     +       V+Y   +G I + DLTN+KS +++ +W
Sbjct: 63  GSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRW 103

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGKTS +  +++ +F D   +TVG  F  K          P  + IWD AG+
Sbjct: 3   VVLLGDMNVGKTSLLHRYMERRFKDTV-STVGGAFYLKQW-------GPYNISIWDTAGR 54

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV 334
           +++  +  +Y + +   I+ +D++N +S E +
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL 86

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           K++++GD  VGK+S +  F QNKF + Y  T+GVDF TK
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTK 39

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 10/128 (7%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           T   ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D 
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDT 56

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLL 358
           AGQ+ Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+
Sbjct: 57  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLV 111

Query: 359 ASKCDLPD 366
            ++ DL D
Sbjct: 112 GTQIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 8/72 (11%)

Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
            + +++ GDS+VGK+S V  FV+N+F +N ++T+G  F T+ +         VK +IWD 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTV---NLDDTTVKFEIWDT 57

Query: 230 -----YCTLSPI 236
                Y +L+P+
Sbjct: 58  AGQERYRSLAPM 69

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 10/123 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +     ++L +WD +G 
Sbjct: 8   IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQR----IELSLWDTSGS 63

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  +I FD++  ++ +SV+ +WK ++   C   N  M   LL+  K
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKM---LLVGCK 118

Query: 362 CDL 364
            DL
Sbjct: 119 SDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 10/122 (8%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S +        GR V L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT----AVDGRTVSLNLWDTAGQE 62

Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  ++  II F + +  S+E+V  +W  ++   C       +P LL+ +K 
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKK 117

Query: 363 DL 364
           DL
Sbjct: 118 DL 119

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 18/41 (43%), Positives = 32/41 (78%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           + KI++IGDS VGK++ +  F +N+F  + K+T+GV+F+T+
Sbjct: 3   LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATR 43

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           YL  +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ VKLQIWD
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTVKLQIWD 57

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
           LKIL+IGDS VGK+S +  F  + F ++  +T+GVDF  K ++
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVT 43

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 252 GKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV 311
           GKT+ V      +F ++   TVG  F+ + +     G   V +++WD+ GQ R+  M   
Sbjct: 11  GKTTLVNVIASGQFSEDTIPTVG--FNMRKV---TKGN--VTIKVWDLGGQPRFRSMWER 63

Query: 312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
           Y +  +  + + D  +R+  E      HDL  K  L+    +P L+L +K DLP 
Sbjct: 64  YCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEG---IPLLVLGNKNDLPG 115

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 7/153 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK+S V  FV+  F ++Y  T+   +   +   K        LQI D  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSIC----TLQITDTT 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G  ++  M R+        I+++ +T+++S E +    ++L  +   +N   +P +L+ +
Sbjct: 58  GSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPI-YELICEIKGNNLEKIPIMLVGN 116

Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           KCD  P R+V  +E  A+   +N  +++E S+K
Sbjct: 117 KCDESPSREVSSSEGAALARTWN-CAFMETSAK 148

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           KI++IGDS VGKT  VQ F    F +   NT+GVDF+ K L
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTL 45

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +LI GDS VGK+S +  F  N F  +Y  T+GVDF  + +      G  VKLQIWD
Sbjct: 9   LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE---INGERVKLQIWD 61

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           +K++V+G+  VGK+S +Q FV+  F  +YK T+GVDF  K
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEK 40

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
           GD  VGKT  +  +  N F  +Y  TV  +FS  ++      G  V L +WD AGQ+ Y 
Sbjct: 8   GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV----VDGNTVNLGLWDTAGQEDYN 63

Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
            +  + Y+ +D  ++ F L ++ S+E+V+ +W  +L           +P +L+ +K DL 
Sbjct: 64  RLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHY-----APGVPIVLVGTKLDLR 118

Query: 366 D 366
           D
Sbjct: 119 D 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G+  VGK+S +Q FV+  F  +YK T+GVDF  K +  ++     V+L +WD
Sbjct: 3   VIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ-SDEDVRLMLWD 57

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 3/55 (5%)

Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +I GD  VGK+  +  F + KF+ +  +T+GV+F T+++   +  G+ +KLQIWD
Sbjct: 6   IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVNGQKIKLQIWD 57

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 16/41 (39%), Positives = 29/41 (70%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           K++ +GD +VGKTS +  F+ + F + Y+ T+G+DF +K +
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTM 42

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           I++ GD  VGKT+ +   V ++F + Y  T+G     K     +   R +KLQ+WD 
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT---IEPYRRNIKLQLWDT 61

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 171 YLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------GRP 221
           YLI  L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G          
Sbjct: 3   YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFR 62

Query: 222 VKLQIWD 228
           V LQ+WD
Sbjct: 63  VHLQLWD 69

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ L   +  G+ VK QIWD
Sbjct: 15  IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTL---QVEGKTVKAQIWD 67

Length = 216

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ILI G    GKT+ +      +       T+G  F+ + +++K      VK  +WD+ GQ
Sbjct: 17  ILILGLDNAGKTTILYKLKLGEI-VTTIPTIG--FNVETVTYKN-----VKFTVWDVGGQ 68

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +    + R Y+ N+D  I + D  +R   E     K +L +    +  A  P L+LA+K 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEA---KEELHALLNEEELADAPLLILANKQ 125

Query: 363 DLPD 366
           DLP 
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ ++ F   + +     T+G  F+ K L +  Y     KL IWD+ GQ
Sbjct: 17  ILMLGLDNAGKTTILKKF-NGEDISTISPTLG--FNIKTLEYNGY-----KLNIWDVGGQ 68

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R Y++++D  I + D ++R   E     K +L    + +  A    L+ A+K 
Sbjct: 69  KSLRSYWRNYFESTDALIWVVDSSDRARLEDC---KRELQKLLVEERLAGATLLIFANKQ 125

Query: 363 DLPDRQVEINEIEAVCH--QYNFMSW--IEVSSKEHLMIEDSMNFLVD 406
           DLP   +   EI  V          W     S+     + D +++LVD
Sbjct: 126 DLPG-ALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD-- 228
           + +++ G+  VGKTS V  +V+NKF + +++T    F  K ++    GG+ + L IWD  
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI---GGKRIDLAIWDTA 57

Query: 229 ---IYCTLSPI 236
               Y  L PI
Sbjct: 58  GQERYHALGPI 68

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 13/167 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G   VGKTS  +  +  KF  +  +T G++             + ++L +WD  GQ
Sbjct: 4   LMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDW--KIPAPERKKIRLNVWDFGGQ 61

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + Y    + +  +    +++FDL        V  W        I   G + P +L+ +  
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLR-----QIKAFGGVSPVILVGTHI 116

Query: 363 D-LPDRQVEINEIEAVCHQYNFMSW--IEVSSKEHLMIEDSMNFLVD 406
           D   D    I + +A+  ++  +      VS K    I +    +  
Sbjct: 117 DESCDED--ILK-KALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 38/185 (20%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN--------TVGVDFSTKLLSHKKYGGRPVKL 294
           +LI G    GKT++++   + KF  NYK         TVG++  T  +          +L
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGTIEVGK-------ARL 53

Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF-ESVVQWKHDLDSKCILDNGAML 353
             WD+ GQ+    +   YY  S G I + D T+R+ F ES   ++  ++++ +      +
Sbjct: 54  MFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEG----V 109

Query: 354 PCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM-----------IEDSMN 402
           P L+LA+K DLPD  + + EI+ V     F   I +  +   +           +E+ + 
Sbjct: 110 PLLVLANKQDLPDA-LSVAEIKEV-----FDDCIALIGRRDCLVQPVSALEGEGVEEGIE 163

Query: 403 FLVDR 407
           +LVD 
Sbjct: 164 WLVDC 168

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG----------RPV 292
           +L+ GDS VGK+S V   V+   +     T+G     K +++   G           R  
Sbjct: 24  VLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDF 83

Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW 337
            +++WD++G +RY     ++Y   +G I + DL+ R++  S+ +W
Sbjct: 84  FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKW 128

Length = 334

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           K+L+IGDS VGK+  +  F ++ F  ++ +T+G+DF  +
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIR 43

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           +KI+V+GD   GKTS ++ F Q  F  +YK T+G+DF ++
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSR 40

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  + F + Y  TV   ++  +      GG+   L ++D AGQ+
Sbjct: 4   VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV----TVGGKQYLLGLYDTAGQE 59

Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F + N  SF++V  +W  +L  K    N   +P LL+ ++ 
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL--KEYAPN---VPYLLIGTQI 114

Query: 363 DLPD 366
           DL D
Sbjct: 115 DLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GD +VGKT  +  F ++ F  NYK T+GVDF    +   +  G P  LQ+WD
Sbjct: 3   VIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFE---MERFEVLGVPFSLQLWD 55

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWD 228
           +LI G+S+VGKTS++  +  + F   + +TVG+DF  K +  + K     +KLQIWD
Sbjct: 4   LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKR----IKLQIWD 56

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
           ++K+L +GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G  P GT     
Sbjct: 4   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQG--PDGTSGKAF 61

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 19/106 (17%)

Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
           + +K  +WD+ GQD+   + R YYQN++G I + D  +R+      +    + S+  L +
Sbjct: 59  KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRD 118

Query: 350 GAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
             +   L+ A+K DLP                N MS  EV+ K  L
Sbjct: 119 AVL---LVFANKQDLP----------------NAMSTTEVTEKLGL 145

Length = 182

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           + +L+ GDS VGKT  +  F  N+F  ++ +T+GVDF  K +   +  G  V++QIWD
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI---EVDGIKVRIQIWD 55

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + KI+VIGDS VGKT     F   +F +  + T+GVDF  + +
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTV 44

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ G++ VGKT  V+ F Q  F      T+GVDF  K +   +  G  +KLQIWD
Sbjct: 10  IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EIKGEKIKLQIWD 62

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GD  VGKT  +  +  N F ++Y  TV  ++S  +    +  G+PV+L +WD
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADV----EVDGKPVELGLWD 52

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD+  GKT+ +  F ++ + ++Y  TV  +++      K      ++L +WD +G 
Sbjct: 4   IVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDK----HRIELNMWDTSGS 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKC 345
             Y  +  + Y +SD  +I FD++  ++ +SV+ +W+ +    C
Sbjct: 60  SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC 103

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           +++VIGDSTVGK+S ++ F + +F +    TVGVDF ++L+
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLI 44

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 18/39 (46%), Positives = 31/39 (79%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           K++++GDS+VGK+S V  FV+N+F +N ++T+G  F T+
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQ 41

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
                KI+V+GD  VGKT+ +   V ++F + Y  T+G     K
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAK 45

Length = 219

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GDS VGKT  +  F    FL  ++  TVG+ F+ K+++     G  VKLQIWD
Sbjct: 3   VMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVT---VDGVKVKLQIWD 56

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 34/125 (27%), Positives = 66/125 (52%), Gaps = 12/125 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G  + GK++ +      + +     TVG  F+ ++L  +K+    + L +WD+ GQ
Sbjct: 2   VLLLGLDSAGKSTLLYKLKHAELVTTIP-TVG--FNVEMLQLEKH----LSLTVWDVGGQ 54

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSF-ESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           ++   + + Y +N+DG + + D ++     ES  + KH L ++ I      +P +LLA+K
Sbjct: 55  EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKG----VPVVLLANK 110

Query: 362 CDLPD 366
            DLP 
Sbjct: 111 QDLPG 115

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 29/141 (20%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--------VDFSTKLLSHKKYGGRPVKL 294
           IL+ G    GKT+ +           YK  +G        + F+ + +++K      +  
Sbjct: 16  ILMVGLDAAGKTTIL-----------YKLKLGESVTTIPTIGFNVETVTYKN-----ISF 59

Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
            +WD+ GQD+   + R YY N+ G I + D  +R   +   +  H + ++  L +  +  
Sbjct: 60  TVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVI-- 117

Query: 355 CLLLASKCDLPD--RQVEINE 373
            L+ A+K DLPD  +  EI E
Sbjct: 118 -LVFANKQDLPDAMKAAEITE 137

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 14/43 (32%), Positives = 29/43 (67%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
            K L+IG +  GK+  +  F++NKF  +  +T+GV+F +++++
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN 43

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V LQIWD
Sbjct: 8   VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTLQIWD 60

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G  +VGKTS V+ +V ++FL   Y+NT+G  F  K +     G R V L IWD
Sbjct: 3   VVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV---VGERVVTLGIWD 56

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           S+ IL+ GDS VGK+S +  F+ +  +++   T+GVDF  K L+    GG+ +KL IWD
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLT---VGGKRLKLTIWD 68

Length = 211

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 30/154 (19%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 247 GDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDF---STKLLSHKKYGGRPVKLQIWDIAGQ 302
           G    GK++ +Q F+   F  + Y  T+   +   + ++   +KY      L + ++   
Sbjct: 11  GAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKY------LILREVGED 64

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW--KHDLDSKCILDNGAMLPCLLLAS 360
           +  I ++       D   +++D ++  SF    +   K+ +  +        +PCL +A+
Sbjct: 65  EEAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYKKYFMLGE--------IPCLFVAA 116

Query: 361 KCDLPDRQVEINEIE--AVCHQYNFMSWIEVSSK 392
           K DL D Q +  E++    C +      +  SS+
Sbjct: 117 KADL-DEQQQRAEVQPDEFCRKLGLPPPLHFSSR 149

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 170 SYLI--LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
           +YL   +I GD+ VGK+  +  F   +F   +  T+GV+F  ++++     G+ +KLQIW
Sbjct: 2   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDGKQIKLQIW 58

Query: 228 D 228
           D
Sbjct: 59  D 59

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     TVG  F+ + +++K      VK  +WD+ GQ
Sbjct: 12  ILMLGLDAAGKTTILYKLKLGQSVTTIP-TVG--FNVETVTYKN-----VKFNVWDVGGQ 63

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   LLL  A+
Sbjct: 64  DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHR-----IINDREMRDALLLVFAN 118

Query: 361 KCDLPD 366
           K DLPD
Sbjct: 119 KQDLPD 124

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
            K+L+IGDS VGK+  +  F  + + ++Y +T+GVDF
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 39

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           D + + K+L+IGDS VGK+S +  F  N F  +Y  T+GVDF
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 43

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 19/43 (44%), Positives = 32/43 (74%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + KI++IGDS VGK++ +  F +N+F    K+T+GV+F+T+ L
Sbjct: 12  LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTL 54

Length = 216

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           K++V+GD +VGKT  +  F ++ F  NYK T+GVDF
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDF 37

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 174 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +I GD+ VGK+  +  F   +F   +  T+GV+F  ++++      +P+KLQIWD
Sbjct: 10  IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDNKPIKLQIWD 61

Length = 210

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           I + GD+ +GKTS +  +V+ +F + Y  T+GV+F  K +S     G  +   IWD+
Sbjct: 3   IGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTIS---IRGTEITFSIWDL 56

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 19/104 (18%)

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
           +   +WD+ GQD+   + R Y+QN+ G I + D  +R+      +    + ++  L +  
Sbjct: 44  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV 103

Query: 352 MLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
           +   L+ A+K DLP                N MS  EV+ K  L
Sbjct: 104 L---LVFANKQDLP----------------NAMSAAEVTDKLGL 128

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 4   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 60  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 114

Query: 362 CDLPDRQVEINEI 374
            DL + +  I E+
Sbjct: 115 KDLRNDEHTIREL 127

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GD  VGKT  +  +  NKF   Y  TV  ++S  +       G+ V L +WD
Sbjct: 3   IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANV----TVDGKQVNLGLWD 54

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT+ +Q   ++ + + Y  TV  +++  L + ++     V+L +WD +G 
Sbjct: 16  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 71

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  ++ FD++  + F+S + +W+ +     ILD       LL+  K
Sbjct: 72  PYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAE-----ILDYCPSTRILLIGCK 126

Query: 362 CDL 364
            DL
Sbjct: 127 TDL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
           LKI ++GD+ +GKTS +  +V+ +F + Y  T+GV+F  K +S
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTIS 43

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           + K+L+IG+S+VGKTS++  +  + F   + +TVG+DF  K
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 41

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K ++IGD  VGK+  +  F + KF+ +  +T+GV+F T+++
Sbjct: 2   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 44

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           +KI+V+GD  VGKT  +  +  NKF   Y  TV  ++S  +       G+  
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANV----TVDGKQV 48

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 71

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R   + VV+ + +L      D       L+ A+K 
Sbjct: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 128

Query: 363 DLPD 366
           DLP+
Sbjct: 129 DLPN 132

Length = 181

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
            ++L+IGDS VGKT  +  F  N+F  ++ +T+GVDF  K +
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI 42

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLS 151
           +K++++G  +VGKTS V+ +V ++FL   Y+NT+G  F  K + 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV 44

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTV-GVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
           I++ G  + GKT+ +     N+F+    NTV    F+T+ +       + V    WD+ G
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFV----NTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGG 61

Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q++   + + Y + +DG + + D  + +  E      H + +K   + G  +P L+LA+K
Sbjct: 62  QEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKI-TKFSENQG--VPVLVLANK 118

Query: 362 CDLPDRQVEINEIE 375
            DLP   + ++E+E
Sbjct: 119 QDLP-NALPVSEVE 131

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           +LK++++GD  VGK+S +  +V NKF     +T+GV+F  K
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK 45

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++I G   VGKTS ++ F  + F +  K+TVGVDF  K +  +   G+ ++LQIWD
Sbjct: 3   VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR---GKKIRLQIWD 55

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTK 148
            +  V+GD  VGK++ VQ F  +   F  NY  T G D   K
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVK 42

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 24/133 (18%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFL---------DNYKNTVGVDFSTKLLSHKKYGGRP 291
           Y +++ GDS VGK+S    F    +          D Y+ TV VD            G  
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVD------------GEE 48

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
             L ++D   Q+  + +     Q  D  +I++ +T+R SFE   + +  L      ++  
Sbjct: 49  ATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAED-- 106

Query: 352 MLPCLLLASKCDL 364
            +P +L+ +K DL
Sbjct: 107 -IPIILVGNKSDL 118

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           KI+++GDS  GKT+ +Q F ++ F +NY  TV
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV 34

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN-- 349
           +    +D++GQ +Y  +   YY+N  G I + D ++R         K +L+   +L++  
Sbjct: 45  LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVA---KDELEL--LLNHPD 99

Query: 350 --GAMLPCLLLASKCDLPDRQVEINEIEAVC 378
                +P L  A+K DLPD    +   + +C
Sbjct: 100 IKHRRIPILFYANKMDLPDALTAVKITQLLC 130

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+     +  +      + +     T+  + K       KL +WDI GQ
Sbjct: 18  ILLLGLDNAGKTT-----ILKQLASEDISHI---TPTQGFNIKNVQADGFKLNVWDIGGQ 69

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            +     R Y++N+D  I + D  +RK FE   Q   +L  +  L   A +P L+ A+K 
Sbjct: 70  RKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKL---AGVPVLVFANKQ 126

Query: 363 DLPD 366
           DL  
Sbjct: 127 DLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           L+L+ GD   GKT++V+  +  +F   Y  T+GV+    L  H   G   ++  +WD
Sbjct: 3   LVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLDFHTNRG--KIRFNVWD 55

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 13/135 (9%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y ++I G    GKT+ +  F+  + +     T+G +        ++   + ++  +WDI 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSN-------VEEIVYKNIRFLMWDIG 67

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+        YY N+D  I++ D T+R+      +  + + +   L    +   L+LA+
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVL---LVLAN 124

Query: 361 KCDLPDRQ--VEINE 373
           K DL       EI+E
Sbjct: 125 KQDLKGAMTPAEISE 139

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           K++V+G   VGK++    F+Q  F+D+Y  T+
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI 33

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           D + + KI++IG++ VGKT  V+ F Q  F      T+GVDF  K
Sbjct: 3   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK 47

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GDS  GKT+ +Q F ++ F +NY  TV  +++       +   + ++L +WD
Sbjct: 4   IVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASF----EVDKQRIELSLWD 55

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           GD  VGKTS +  +  N +   Y  T   +FS  +L      G+PV+LQ+ D
Sbjct: 7   GDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVD----GKPVRLQLCD 54

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 25/138 (18%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFL--------DNYK----NTVGVDFSTKLLSHKKYGGR 290
           I++ G    GKT++V+       +         + K     TV +DF     S +     
Sbjct: 13  IVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF----GSIELDEDT 68

Query: 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350
              + ++   GQ+R+  M  +  + + G I++ D +   +F +            I    
Sbjct: 69  --GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPI---- 122

Query: 351 AMLPCLLLASKCDLPDRQ 368
              P ++  +K DL D  
Sbjct: 123 ---PVVVAINKQDLFDAL 137

Length = 187

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF-ESVVQWKHDLDSKCILDNG 350
           VK   +D+ G ++   + + Y+   DG + + D  + + F ES    K +LDS    +  
Sbjct: 63  VKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQES----KEELDSLLNDEEL 118

Query: 351 AMLPCLLLASKCDLPD 366
           A +P L+L +K D P 
Sbjct: 119 ANVPILILGNKIDKPG 134

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 27/132 (20%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--------VDFSTKLLSHKKYGGRPVKL 294
           ILI G    GKT+ +           Y+  VG        + F+ + +++K      +K 
Sbjct: 2   ILILGLDGAGKTTIL-----------YRLQVGEVVTTIPTIGFNVETVTYKN-----LKF 45

Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
           Q+WD+ GQ       R YY N+D  I + D T+R   + +   K +L +    +      
Sbjct: 46  QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR---DRLGISKSELHAMLEEEELKDAV 102

Query: 355 CLLLASKCDLPD 366
            L+ A+K D+P 
Sbjct: 103 LLVFANKQDMPG 114

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ G   VGK++    F+Q  F+D+Y  T+  D   K +      G    L I D
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIE---IDGEVCLLDILD 54

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           K++V+G   VGK++    FVQ  F+D Y  T+
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI 35

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS 151
           K++++GDS VGKT  +  F    FL  ++  TVG+ F+ K+++
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVT 44

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           ++V+GD  VGKT  +  +  N F ++Y  TV  ++S  +    +  G+P 
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADV----EVDGKPV 46

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 13/43 (30%), Positives = 29/43 (67%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
           +K++ +G+S VGK+  ++ + + +F+  Y  T+G+D+  K +S
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS 43

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G   VGKTS  +  +  KF  +  +T G++             + ++L +WD
Sbjct: 4   LMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDW--KIPAPERKKIRLNVWD 57

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKTS +      + L++   T G  F++  +  +        +++ +I G 
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDA-----IMELLEIGGS 54

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  + Y   S G I + D  + +      Q  H L     L +   LP ++LA+K 
Sbjct: 55  QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQL-----LQHPPDLPLVVLANKQ 109

Query: 363 DLPDR 367
           DLP  
Sbjct: 110 DLPAA 114

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
           K++++G+  VGKTS V  +V+NKF + +++T    F  K ++   
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG 46

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
            KIL+IGDS VGK+S +  F+ +  +++   T+GVDF  K L+
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLT 56

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
COG1160	444	Predicted GTPases [General function prediction onl	100.0
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0394|consensus	210		100.0
KOG0078|consensus	207		100.0
KOG0080|consensus	209		100.0
KOG0094|consensus	221		100.0
KOG0098|consensus	216		100.0
KOG0087|consensus	222		100.0
PRK03003	472	GTP-binding protein Der; Reviewed	100.0
KOG0079|consensus	198		100.0
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.98
KOG0093|consensus	193		99.97
KOG0091|consensus	213		99.97
KOG0095|consensus	213		99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
PRK00093	435	GTP-binding protein Der; Reviewed	99.97
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.97
KOG0086|consensus	214		99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
KOG0088|consensus	218		99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
KOG0083|consensus	192		99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.95
KOG0081|consensus	219		99.95
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.95
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.95
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.95
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.95
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.95
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
PTZ00369	189	Ras-like protein; Provisional	99.95
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
KOG0097|consensus	215		99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.95
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
PLN03108	210	Rab family protein; Provisional	99.95
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.94
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.94
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.94
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.94
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.94
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.94
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.94
KOG0395|consensus	196		99.94
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.93
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.93
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.93
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.93
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.93
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.93
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.93
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.92
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.92
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.92
KOG0393|consensus	198		99.92
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.92
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.92
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.92
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.92
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
PTZ00099	176	rab6; Provisional	99.91
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.91
PLN00223	181	ADP-ribosylation factor; Provisional	99.91
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.91
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.9
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.9
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.9
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.9
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.9
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.9
PTZ00133	182	ADP-ribosylation factor; Provisional	99.9
KOG4252|consensus	246		99.89
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.89
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.89
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.88
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.88
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.88
PLN00023	334	GTP-binding protein; Provisional	99.88
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.87
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.87
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.87
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.86
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.86
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.86
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.85
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.85
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.85
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.84
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.84
PRK12299	335	obgE GTPase CgtA; Reviewed	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.83
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.83
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.82
COG1100	219	GTPase SAR1 and related small G proteins [General	99.82
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.81
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.81
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.81
KOG0073|consensus	185		99.8
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.8
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.8
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.79
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.79
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.79
KOG0070|consensus	181		99.78
PRK04213	201	GTP-binding protein; Provisional	99.78
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.77
PRK03003	472	GTP-binding protein Der; Reviewed	99.77
KOG4423|consensus	229		99.76
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.76
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.76
PRK11058	426	GTPase HflX; Provisional	99.76
KOG0075|consensus	186		99.76
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.76
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.76
PRK15494	339	era GTPase Era; Provisional	99.76
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.75
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.75
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.74
PRK12296	500	obgE GTPase CgtA; Reviewed	99.74
PRK12298	390	obgE GTPase CgtA; Reviewed	99.74
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.73
PRK12297	424	obgE GTPase CgtA; Reviewed	99.73
KOG1673|consensus	205		99.73
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.73
COG1160	444	Predicted GTPases [General function prediction onl	99.73
PRK05306	787	infB translation initiation factor IF-2; Validated	99.72
COG0486	454	ThdF Predicted GTPase [General function prediction	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.72
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.72
PRK00093	435	GTP-binding protein Der; Reviewed	99.72
KOG0096|consensus	216		99.72
KOG3883|consensus	198		99.71
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.71
CHL00189	742	infB translation initiation factor 2; Provisional	99.71
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.7
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.7
COG1159	298	Era GTPase [General function prediction only]	99.7
PRK00089	292	era GTPase Era; Reviewed	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.69
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.68
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.68
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.68
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.67
PRK05433	600	GTP-binding protein LepA; Provisional	99.67
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.66
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.66
KOG0071|consensus	180		99.65
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.63
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.63
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.63
PRK12317	425	elongation factor 1-alpha; Reviewed	99.63
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.62
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.62
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.62
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.61
KOG0076|consensus	197		99.59
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.59
PRK10218	607	GTP-binding protein; Provisional	99.58
PRK04004	586	translation initiation factor IF-2; Validated	99.57
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.57
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.57
KOG1191|consensus	531		99.56
PRK12736	394	elongation factor Tu; Reviewed	99.55
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.54
CHL00071	409	tufA elongation factor Tu	99.54
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.54
PRK12735	396	elongation factor Tu; Reviewed	99.54
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.54
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.53
KOG0074|consensus	185		99.52
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.51
COG2229	187	Predicted GTPase [General function prediction only	99.51
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.5
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.5
COG0218	200	Predicted GTPase [General function prediction only	99.5
KOG0072|consensus	182		99.5
KOG1423|consensus	379		99.48
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.47
COG2262	411	HflX GTPases [General function prediction only]	99.47
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.47
PLN03127	447	Elongation factor Tu; Provisional	99.46
PLN03126	478	Elongation factor Tu; Provisional	99.46
PRK00049	396	elongation factor Tu; Reviewed	99.46
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.44
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.44
KOG0462|consensus	650		99.43
COG1084	346	Predicted GTPase [General function prediction only	99.43
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.43
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.41
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.41
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.41
KOG1707|consensus	625		99.39
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.39
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.39
KOG1489|consensus	366		99.39
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.38
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.37
PLN00043	447	elongation factor 1-alpha; Provisional	99.37
PRK13351	687	elongation factor G; Reviewed	99.37
PTZ00141	446	elongation factor 1- alpha; Provisional	99.35
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.33
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.33
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.32
PRK12739	691	elongation factor G; Reviewed	99.31
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.29
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.29
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.29
COG0536	369	Obg Predicted GTPase [General function prediction	99.29
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.28
PRK09602	396	translation-associated GTPase; Reviewed	99.28
COG1163	365	DRG Predicted GTPase [General function prediction	99.27
KOG1145|consensus	683		99.27
PRK12740	668	elongation factor G; Reviewed	99.26
PRK00007	693	elongation factor G; Reviewed	99.23
KOG1490|consensus	620		99.21
PRK14845	1049	translation initiation factor IF-2; Provisional	99.21
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.21
KOG0084|consensus	205		99.18
PRK09866	741	hypothetical protein; Provisional	99.18
COG3596	296	Predicted GTPase [General function prediction only	99.13
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.12
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.11
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.1
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.1
KOG0082|consensus	354		99.02
KOG0077|consensus	193		99.02
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.02
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.0
PTZ00258	390	GTP-binding protein; Provisional	98.98
KOG0090|consensus	238		98.97
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.92
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.92
KOG0098|consensus	216		98.91
PRK07560	731	elongation factor EF-2; Reviewed	98.91
KOG0394|consensus	210		98.9
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.9
KOG0080|consensus	209		98.9
KOG1532|consensus	366		98.89
KOG0705|consensus	749		98.89
PRK09601	364	GTP-binding protein YchF; Reviewed	98.88
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.87
KOG1144|consensus	1064		98.86
PTZ00416	836	elongation factor 2; Provisional	98.86
KOG0095|consensus	213		98.85
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.84
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.83
KOG0458|consensus	603		98.83
KOG1707|consensus	625		98.83
KOG0094|consensus	221		98.82
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.81
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.8
KOG3905|consensus	473		98.8
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.79
KOG0079|consensus	198		98.77
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.76
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.74
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.73
KOG0087|consensus	222		98.71
KOG3886|consensus	295		98.7
KOG0461|consensus	522		98.7
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.69
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.68
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.68
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.65
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.63
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.63
KOG0078|consensus	207		98.62
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.61
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.6
KOG0092|consensus	200		98.52
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.5
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.48
PRK00098	298	GTPase RsgA; Reviewed	98.47
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.46
PRK12289	352	GTPase RsgA; Reviewed	98.46
KOG0393|consensus	198		98.44
KOG0086|consensus	214		98.44
PRK13768	253	GTPase; Provisional	98.44
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.44
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.44
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.44
KOG0410|consensus	410		98.43
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.43
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.42
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.42
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.42
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.4
KOG0468|consensus	971		98.39
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.33
PRK12288	347	GTPase RsgA; Reviewed	98.32
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.32
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.32
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.32
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.31
KOG0097|consensus	215		98.31
COG0486	454	ThdF Predicted GTPase [General function prediction	98.31
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.31
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.3
KOG0091|consensus	213		98.3
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.29
KOG1486|consensus	364		98.28
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.27
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.27
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.25
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.25
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.25
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.23
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.22
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.22
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.22
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.22
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.21
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.21
PLN03110	216	Rab GTPase; Provisional	98.18
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.17
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.17
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.17
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.16
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.15
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.15
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.13
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.13
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.13
KOG4252|consensus	246		98.12
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.12
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.12
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.12
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.11
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.11
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.1
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.09
PRK15494	339	era GTPase Era; Provisional	98.09
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.09
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.09
PLN03108	210	Rab family protein; Provisional	98.08
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.08
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.08
COG1159	298	Era GTPase [General function prediction only]	98.08
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.07
PTZ00369	189	Ras-like protein; Provisional	98.05
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.05
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.04
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.04
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.04
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.04
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.04
KOG0093|consensus	193		98.03
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.03
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.03
COG0218	200	Predicted GTPase [General function prediction only	98.01
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.01
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.01
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.01
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.0
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	97.99
KOG2486|consensus	320		97.99
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.99
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.98
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.96
PLN00023	334	GTP-binding protein; Provisional	97.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.93
KOG0448|consensus	749		97.93
PTZ00133	182	ADP-ribosylation factor; Provisional	97.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.92
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	97.92
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.91
KOG1191|consensus	531		97.91
PRK04213	201	GTP-binding protein; Provisional	97.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.9
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.9
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.89
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.88
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.88
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.88
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.87
PRK13796	365	GTPase YqeH; Provisional	97.87
KOG0081|consensus	219		97.86
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	97.86
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.86
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.85
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.85
PLN03118	211	Rab family protein; Provisional	97.85
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.84
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	97.83
PLN00223	181	ADP-ribosylation factor; Provisional	97.82
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.82
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.82
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.81
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	97.81
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.81
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.81
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.81
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.81
KOG1143|consensus	591		97.8
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.79
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.78
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.78
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.77
PRK11058	426	GTPase HflX; Provisional	97.77
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.77
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.77
COG1100	219	GTPase SAR1 and related small G proteins [General	97.76
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.76
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.76
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.75
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.74
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.74
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.74
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.73
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.72
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.72
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.71
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.71
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.7
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.7
KOG0463|consensus	641		97.69
KOG3887|consensus	347		97.69
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.68
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.67
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.67
KOG0460|consensus	449		97.67
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	97.67
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.67
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.66
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.66
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.66
KOG0088|consensus	218		97.66
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.64
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.63
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.63
KOG0467|consensus	887		97.62
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.61
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.6
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.59
KOG0099|consensus	379		97.57
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.56
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	97.54
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.54
KOG2655|consensus	366		97.54
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.53
PRK01889	356	GTPase RsgA; Reviewed	97.52
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.5
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.5
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.5
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.48
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.46

>COG1160 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=1.5e-40  Score=331.69  Aligned_cols=293  Identities=15%  Similarity=0.124  Sum_probs=228.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCCCC------------------
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTP------------------  169 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  169 (452)
                      ..|+|||||||||||||||+++++.+ ++..|++++|..+..+.|..+.+...++++.....                  
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999 89999999999999999999888888888886322                  


Q ss_pred             ceeEEEEcCCCCCchhhhhhhcc-------------cccccccCCCcccccee----eeecccccCCccceeeeeecccc
Q psy14768        170 SYLILITGDSTVGKTSYVQGFVQ-------------NKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCT  232 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~~-------------~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~  232 (452)
                      +..|+||+|++.|.|..+..++.             |+.+.........+|++    .++.++..|+.++...+......
T Consensus        84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~  163 (444)
T COG1160          84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLEL  163 (444)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence            23799999999999988665432             44444333333334443    45556666666655443333222


Q ss_pred             C-C---CCCC---CcccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768        233 L-S---PIQI---PTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       233 l-~---~~~~---~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      + .   ....   ..++|+|+|+||||||||+|++++ ++.+.+..+++++|..+..+++   +++.  +.++||||.++
T Consensus       164 l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~---~~~~--~~liDTAGiRr  238 (444)
T COG1160         164 LPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER---DGRK--YVLIDTAGIRR  238 (444)
T ss_pred             cCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE---CCeE--EEEEECCCCCc
Confidence            2 1   1111   469999999999999999999998 7788999999999999999988   6655  56779999654


Q ss_pred             ----------hhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHH
Q psy14768        305 ----------YICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEIN  372 (452)
Q Consensus       305 ----------~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e  372 (452)
                                |+..+ ...++.+|+++||+|++++.+.|+.+......+..        ++++||+||||+.+ .+...+
T Consensus       239 k~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g--------~~~vIvvNKWDl~~~~~~~~~  310 (444)
T COG1160         239 KGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG--------RGIVIVVNKWDLVEEDEATME  310 (444)
T ss_pred             ccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC--------CCeEEEEEccccCCchhhHHH
Confidence                      44443 35789999999999999999999999988888777        99999999999976 222333


Q ss_pred             ----HHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        373 ----EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       373 ----~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                          ++......+++.+.+++||++|.+++++|+.+.+...+....
T Consensus       311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r  356 (444)
T COG1160         311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRR  356 (444)
T ss_pred             HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence                344455556777789999999999999999999999888664

>KOG0084|consensus

Probab=100.00  E-value=7.8e-38  Score=278.39  Aligned_cols=199  Identities=30%  Similarity=0.548  Sum_probs=175.7

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....+||+++|++|||||+|+.||..+.|...+.+|+|+|+..+.+.+   +++.++++|||||||++|+++...||++|
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~---~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL---DGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee---cceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            344689999999999999999999999999999999999999999999   99999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |+||+|||+|+..||+++..|+.++.++    ...++|.+|||||+|+.+ +.++.++++.++..++.+.|+|+|||++.
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~----~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~  158 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRY----ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST  158 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhh----ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence            9999999999999999999999999999    678899999999999998 99999999999999999889999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHhhccccccccccccCCCCCCcCCCCCCCCCccC
Q psy14768        396 MIEDSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC  452 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k~~~~c~~  452 (452)
                      ||+++|..++..+...+........          .+...-+....+.++.+++|||
T Consensus       159 NVe~~F~~la~~lk~~~~~~~~~~~----------~~~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  159 NVEDAFLTLAKELKQRKGLHVKWST----------ASLESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             CHHHHHHHHHHHHHHhcccCCCCCc----------CCCCceeeCCCCcccccCCCCC
Confidence            9999999999999877765443211          1111222222466677777775

>KOG0092|consensus

Probab=100.00  E-value=1.5e-34  Score=256.50  Aligned_cols=170  Identities=30%  Similarity=0.619  Sum_probs=160.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|+.+||||||+-||..+.|.....+|+|..|.+..+.+   ++..++|.||||||||+|.++.+.||++|++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~---~~~~ikfeIWDTAGQERy~slapMYyRgA~A   80 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV---DDNTIKFEIWDTAGQERYHSLAPMYYRGANA   80 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe---CCcEEEEEEEEcCCcccccccccceecCCcE
Confidence            4689999999999999999999999999888999999999999999   8889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..||+.++.|..++.+.    ..+++-|.|||||.||.+ +++..++++.+++..+.. |+|+|||+|.||
T Consensus        81 AivvYDit~~~SF~~aK~WvkeL~~~----~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETSAKTg~Nv  155 (200)
T KOG0092|consen   81 AIVVYDITDEESFEKAKNWVKELQRQ----ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETSAKTGENV  155 (200)
T ss_pred             EEEEEecccHHHHHHHHHHHHHHHhh----CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEecccccCH
Confidence            99999999999999999999999988    557788889999999999 999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhH
Q psy14768        398 EDSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~~~  416 (452)
                      +++|..|++.+......+.
T Consensus       156 ~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  156 NEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             HHHHHHHHHhccCcccccc
Confidence            9999999999987766544

>KOG0394|consensus

Probab=100.00  E-value=1.8e-34  Score=253.30  Aligned_cols=173  Identities=31%  Similarity=0.616  Sum_probs=164.3

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|++|||||||+|+|.+++|...+..|+|.||.++.+.+   +++.++++||||||||+|.++...+|+.||.
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V---d~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV---DDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE---cCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            3589999999999999999999999999999999999999999999   9999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      ++||||+++..||+.+..|..++....+.......|+||+|||.|+.+   ++++.+.++.|+...+..+|||+|||...
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            999999999999999999999998886666678899999999999976   89999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhh
Q psy14768        396 MIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~~  414 (452)
                      ||.++|+.+++.++.....
T Consensus       165 NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  165 NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cHHHHHHHHHHHHHhccch
Confidence            9999999999999987654

>KOG0078|consensus

Probab=100.00  E-value=1.2e-33  Score=255.26  Aligned_cols=170  Identities=33%  Similarity=0.622  Sum_probs=162.2

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....+||+++|+++||||+|+.+|..+.|...+..|+|+||..+++..   ++..+.+++|||+||++|+.+...||+.|
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l---~g~~i~lQiWDtaGQerf~ti~~sYyrgA   85 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL---DGKKIKLQIWDTAGQERFRTITTAYYRGA   85 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe---CCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence            445689999999999999999999999999999999999999999999   99999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      ++++||||+++..||+++..|+..++.+    ....+|++|||||+|+.+ +++..+.+++++.++|.. |+||||++|.
T Consensus        86 ~gi~LvyDitne~Sfeni~~W~~~I~e~----a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F~EtSAk~~~  160 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRNWIKNIDEH----ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-FFETSAKTNF  160 (207)
T ss_pred             CeeEEEEEccchHHHHHHHHHHHHHHhh----CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe-EEEccccCCC
Confidence            9999999999999999999999999999    677999999999999988 999999999999999998 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhh
Q psy14768        396 MIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~~  414 (452)
                      ||.++|..+++.+.+....
T Consensus       161 NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  161 NIEEAFLSLARDILQKLED  179 (207)
T ss_pred             CHHHHHHHHHHHHHhhcch
Confidence            9999999999999974443

>KOG0080|consensus

Probab=100.00  E-value=4.3e-34  Score=245.10  Aligned_cols=172  Identities=33%  Similarity=0.547  Sum_probs=162.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|.+|||||||+.+|..+.|......|+|.||..+.+.+   +++.+++.||||||||+|+.+.+.||+.|.
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v---dg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV---DGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE---cCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            34689999999999999999999999999888888999999999999   999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++...+|..+..|+.++..++   .++++..++|+||+|... +.++.++..+|+++++.. |+|+||++.+|
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ys---tn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~SAkt~~~  161 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYS---TNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIECSAKTREN  161 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhc---CCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEcchhhhcc
Confidence            9999999999999999999999999986   667888999999999875 999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhH
Q psy14768        397 IEDSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~~~  416 (452)
                      |+..|++++..|++-....+
T Consensus       162 V~~~FeelveKIi~tp~l~~  181 (209)
T KOG0080|consen  162 VQCCFEELVEKIIETPSLWE  181 (209)
T ss_pred             HHHHHHHHHHHHhcCcchhh
Confidence            99999999999998777655

>KOG0094|consensus

Probab=100.00  E-value=3.8e-34  Score=253.71  Aligned_cols=167  Identities=32%  Similarity=0.565  Sum_probs=156.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+|++++|+.+||||||++||+-+.|...|.+|+|.||...++.+   .+..+.|++|||||||+|+.+.+.||+++.++
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l---~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE---cCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            489999999999999999999999999999999999999999988   89999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..||++...|++.+.+..   ...++-|+|||||.||.+ +++..++.+..+++++.. |+++||+.|.||.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~---gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~-f~etsak~g~NVk  174 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRER---GSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAE-FIETSAKAGENVK  174 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhcc---CCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcE-EEEecccCCCCHH
Confidence            99999999999999999999998873   233477889999999999 999999999999999997 9999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14768        399 DSMNFLVDRIICSKR  413 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~  413 (452)
                      ++|..|+..+.....
T Consensus       175 ~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  175 QLFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHHHhccCccc
Confidence            999998888876655

>KOG0098|consensus

Probab=100.00  E-value=1.4e-33  Score=248.10  Aligned_cols=171  Identities=27%  Similarity=0.537  Sum_probs=162.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+|++++|+.+||||+|+.+|+.++|.+.+..|+|+++..+.+.+   +++.+++++|||+||+.|+++...||+.|.
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i---d~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI---DGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE---cCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            34589999999999999999999999999999999999999999999   999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|||||+++.+||..+..|+..+.++    ..++..|+|+|||+||.. +.++.+++++|+++.++. |+++||+++.|
T Consensus        81 GalLVydit~r~sF~hL~~wL~D~rq~----~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmETSakt~~~  155 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHLTSWLEDARQH----SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FMETSAKTAEN  155 (216)
T ss_pred             ceEEEEEccchhhHHHHHHHHHHHHHh----cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eehhhhhhhhh
Confidence            999999999999999999999999998    578899999999999988 999999999999999988 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhH
Q psy14768        397 IEDSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~~~  416 (452)
                      |+++|......+........
T Consensus       156 VEEaF~nta~~Iy~~~q~g~  175 (216)
T KOG0098|consen  156 VEEAFINTAKEIYRKIQDGV  175 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999999998766543

>KOG0087|consensus

Probab=100.00  E-value=6e-33  Score=249.53  Aligned_cols=173  Identities=29%  Similarity=0.557  Sum_probs=163.7

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....+||+++|+++||||-|+.||..+.|..+..+|+|+++.+..+.+   +++.+..+||||||||+|+.+...||+.|
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v---d~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV---DGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee---cCcEEEEeeecccchhhhccccchhhccc
Confidence            344689999999999999999999999999999999999999999999   99999999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      .+++||||++...+|+.+..|+.+++.+    ...+++|+|||||+||.. +.+..++++.++++.+.. |+|+||+++.
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdh----ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtSAl~~t  162 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDH----ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETSALDAT  162 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhc----CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEecccccc
Confidence            9999999999999999999999999999    778999999999999998 899999999999999988 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhhhHH
Q psy14768        396 MIEDSMNFLVDRIICSKRMEEE  417 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~~~~~  417 (452)
                      ||+++|..++..|.+......-
T Consensus       163 NVe~aF~~~l~~I~~~vs~k~~  184 (222)
T KOG0087|consen  163 NVEKAFERVLTEIYKIVSKKQL  184 (222)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999987765543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=1.6e-32  Score=287.12  Aligned_cols=292  Identities=17%  Similarity=0.138  Sum_probs=196.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCC-----------------CCCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI-----------------QTPS  170 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  170 (452)
                      .+|+|||++|||||||||||++++++ ....+++++++....+.+......+.++.+..                 ....
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a  118 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA  118 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence            68999999999999999999998876 56677777777666655555444455555532                 1234


Q ss_pred             eeEEEEcCCCCCchhhhhhh-------------cccccccccCCCccccce----eeeecccccCCccceeeeeeccccC
Q psy14768        171 YLILITGDSTVGKTSYVQGF-------------VQNKFLDNYKNTVGVDFS----TKLLSHKKYGGRPVKLQIWDIYCTL  233 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~~~i~~~~~----~~~~~~~~id~~~~~l~i~d~~~~l  233 (452)
                      ..|+||.|...|.+.....+             +.|+.|.........+++    ...+.++..++.++...+......+
T Consensus       119 D~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l  198 (472)
T PRK03003        119 DAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAAL  198 (472)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence            58999999999977544332             235555422111111111    1223455555555443322222112


Q ss_pred             CC------CCCCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----
Q psy14768        234 SP------IQIPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----  302 (452)
Q Consensus       234 ~~------~~~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----  302 (452)
                      ..      .....++|+++|++|||||||+|+|++..+ ..+..++++.+.....+.+   ++.  .+.||||||+    
T Consensus       199 ~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~---~~~--~~~l~DTaG~~~~~  273 (472)
T PRK03003        199 PEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL---GGK--TWRFVDTAGLRRRV  273 (472)
T ss_pred             ccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE---CCE--EEEEEECCCccccc
Confidence            11      123458999999999999999999998653 4666788888888777766   554  4579999995    


Q ss_pred             ------chhhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---ccHH
Q psy14768        303 ------DRYICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VEIN  372 (452)
Q Consensus       303 ------e~~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~e  372 (452)
                            +.|..++ ..+++++|++|+|||++++.+++++..+.....        .++|+|||+||||+.+..   ...+
T Consensus       274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--------~~~piIiV~NK~Dl~~~~~~~~~~~  345 (472)
T PRK03003        274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE--------AGRALVLAFNKWDLVDEDRRYYLER  345 (472)
T ss_pred             cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCEEEEEECcccCChhHHHHHHH
Confidence                  3444444 346899999999999999999998865433322        348999999999997511   1112


Q ss_pred             HHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       373 ~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ++.+......+.+++++||++|.||+++|+.+.+.+.+...
T Consensus       346 ~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        346 EIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             HHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            22222233344568999999999999999999998876654

>KOG0079|consensus

Probab=100.00  E-value=1.4e-32  Score=232.71  Aligned_cols=167  Identities=34%  Similarity=0.654  Sum_probs=158.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      -++.+|+|+++||||+|+.+|..+.|..+|..|+|.|+..+++.+   ++..+.++||||||||+|+.+...|++..+++
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i---~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI---NGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec---CCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            468899999999999999999999999999999999999999999   99999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++++||.++..|++++++.+     +..|-+|||||.|+.+ +.+..++++.|+..+++. +||+|||++.|++
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~nc-----dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FETSaKe~~NvE  158 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNC-----DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFETSAKENENVE  158 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcC-----ccccceecccCCCCccceeeehHHHHHHHHhcCch-heehhhhhcccch
Confidence            99999999999999999999999874     5889999999999998 788999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy14768        399 DSMNFLVDRIICSKRME  415 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~  415 (452)
                      .+|.-|.++++..+..+
T Consensus       159 ~mF~cit~qvl~~k~r~  175 (198)
T KOG0079|consen  159 AMFHCITKQVLQAKLRE  175 (198)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999887433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.98  E-value=7.4e-32  Score=279.66  Aligned_cols=291  Identities=16%  Similarity=0.122  Sum_probs=195.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCC-----------------CCCce
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI-----------------QTPSY  171 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  171 (452)
                      ||+|||++|||||||||||++++.+ ....++++++.....+.+......+.|+.+..                 .....
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999998865 55667778888777777766666666666642                 12334


Q ss_pred             eEEEEcCCCCCchhhhhhh-------------cccccccccCCCcccccee----eeecccccCCccceeeeeeccccCC
Q psy14768        172 LILITGDSTVGKTSYVQGF-------------VQNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCTLS  234 (452)
Q Consensus       172 ~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~l~  234 (452)
                      .|+||.|+..|.+.....+             +.|+.|.........+++.    .++.++..++.++...+......+.
T Consensus        81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594        81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence            7999999999988764432             2244443222111112211    2334444444444322221111121


Q ss_pred             C------CCCCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh
Q psy14768        235 P------IQIPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC  307 (452)
Q Consensus       235 ~------~~~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~  307 (452)
                      .      .....++++++|.+|+|||||+|+++++. ......++++.+.....+..   ++.  .+.+|||||++++..
T Consensus       161 ~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~---~~~--~~~liDT~G~~~~~~  235 (429)
T TIGR03594       161 EEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER---NGK--KYLLIDTAGIRRKGK  235 (429)
T ss_pred             cccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE---CCc--EEEEEECCCcccccc
Confidence            1      12335899999999999999999999854 44566677777777666655   443  688999999754432


Q ss_pred             ----------hh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH-H
Q psy14768        308 ----------MS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI-E  375 (452)
Q Consensus       308 ----------~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~-~  375 (452)
                                ++ ..+++.+|++|+|+|++++.++++...+......        ++|+++|+||||+.+.....++. .
T Consensus       236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~--------~~~iiiv~NK~Dl~~~~~~~~~~~~  307 (429)
T TIGR03594       236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEA--------GKALVIVVNKWDLVKDEKTREEFKK  307 (429)
T ss_pred             chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc--------CCcEEEEEECcccCCCHHHHHHHHH
Confidence                      22 3468999999999999999998887655444333        38999999999997311112222 2


Q ss_pred             HHHHH---cCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        376 AVCHQ---YNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       376 ~~~~~---~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      .+...   .+..+++++||++|.|++++|+++.+.+.....
T Consensus       308 ~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~  348 (429)
T TIGR03594       308 ELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANR  348 (429)
T ss_pred             HHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            22222   344569999999999999999999998776543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0093|consensus

Probab=99.97  E-value=1.1e-31  Score=226.98  Aligned_cols=167  Identities=33%  Similarity=0.623  Sum_probs=158.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+|+.|+|.+.+|||||+.+++++.|...+..|.|.++..+++--   ..+.+++++|||+|||+|+.+...+|+.|+++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr---~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR---SDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee---cccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            469999999999999999999999999999999999999987766   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |||||+++.+||..++.|..+|..+    ...+.|+|||+||||+.+ +.++.|.++.+++++|+. |||+|||.+.||+
T Consensus        98 iLmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSaK~NinVk  172 (193)
T KOG0093|consen   98 ILMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSAKENINVK  172 (193)
T ss_pred             EEEEecCCHHHHHHHHHHHHHheee----eccCceEEEEecccCCccceeeeHHHHHHHHHHhChH-HhhhcccccccHH
Confidence            9999999999999999999999998    688999999999999987 899999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy14768        399 DSMNFLVDRIICSKRM  414 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~  414 (452)
                      ++|+.++..|-+.+..
T Consensus       173 ~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  173 QVFERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998876654

>KOG0091|consensus

Probab=99.97  E-value=9.5e-32  Score=231.30  Aligned_cols=205  Identities=31%  Similarity=0.548  Sum_probs=172.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++++++|++-||||||+..|...++..-..||+|.|+....+++.  .+..+++++|||||||+|+++...||+++-+
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~--pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELR--PGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcC--CCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            35789999999999999999999999998889999999998888775  7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +++|||++|..||+.++.|+.+...+..  ....+-+.|||+|+||.. ++++.+++++++...+.. |+||||++|.||
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-FVETSak~g~NV  161 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-FVETSAKNGCNV  161 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-EEEecccCCCcH
Confidence            9999999999999999999999887742  123344679999999988 999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh-hHHHHhhccccccccccccCCCCCCcCCCCCCCCCccC
Q psy14768        398 EDSMNFLVDRIICSKRM-EEEAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCWC  452 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k~~~~c~~  452 (452)
                      ++.|..+.+.+...-.+ +......+-..+.    +++.+--+..+.++....|||
T Consensus       162 eEAF~mlaqeIf~~i~qGeik~edgw~gvKS----srpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  162 EEAFDMLAQEIFQAIQQGEIKLEDGWGGVKS----SRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCceeeeeccccccc----cCCCcCCCcccccCCCCCCCC
Confidence            99999999999888766 3333333333322    333333333446777777877

>KOG0095|consensus

Probab=99.97  E-value=2.3e-31  Score=225.56  Aligned_cols=201  Identities=28%  Similarity=0.488  Sum_probs=172.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      -+||+++|..|||||+|+++|...-|.+...+|+|.||..+++.+   ++.+++++||||+||++|+++...||+.|+++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev---~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV---NGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE---CCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            489999999999999999999999999999999999999999999   99999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |||||++...||+-+..|+.+++++    .+.++--||||||.|+.+ +++.....++|.+.. ...|.|+||++.+||+
T Consensus        84 ilvydiscqpsfdclpewlreie~y----an~kvlkilvgnk~d~~drrevp~qigeefs~~q-dmyfletsakea~nve  158 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQY----ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ-DMYFLETSAKEADNVE  158 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHH----hhcceEEEeeccccchhhhhhhhHHHHHHHHHhh-hhhhhhhcccchhhHH
Confidence            9999999999999999999999999    566677899999999998 688888888888874 4448999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHhhccccccccccccCCCCCCcCC--CCCCCCCcc
Q psy14768        399 DSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVP--ADKVSTYCW  451 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~k~~~~c~  451 (452)
                      ++|..++-.+....+....  ....+....+.+ .+.++|++..  +....+||.
T Consensus       159 ~lf~~~a~rli~~ar~~d~--v~~~~a~a~~~~-seg~si~l~s~aqt~~~~cc~  210 (213)
T KOG0095|consen  159 KLFLDLACRLISEARQNDL--VNNVSAPAPNSS-SEGKSIKLISYAQTQLLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHHHHHhccc--hhhccccCcccc-CCCCcccchhHHHHHHhcccc
Confidence            9999999888876654433  222233333322 5667787776  666677774

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=2.6e-30  Score=240.90  Aligned_cols=173  Identities=44%  Similarity=0.834  Sum_probs=153.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      +||+++|++|||||||+++|+++.+...+.+|++.++....+.+   + +..+.+.||||+|+++|..++..+++++|++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~---~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~   77 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEW---DPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGA   77 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE---CCCCEEEEEEEECCCchhhhhhHHHHhCCCCEE
Confidence            58999999999999999999999988889999999988777776   6 7789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+..........++|++||+||+|+.+ +.+..+++.++++..++..|+++||++|.||+
T Consensus        78 ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~  157 (201)
T cd04107          78 IIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIE  157 (201)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHH
Confidence            99999999999999999999887653222346789999999999975 67788899999999997679999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhH
Q psy14768        399 DSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~~  416 (452)
                      ++|+++++.+........
T Consensus       158 e~f~~l~~~l~~~~~~~~  175 (201)
T cd04107         158 EAMRFLVKNILANDKNLQ  175 (201)
T ss_pred             HHHHHHHHHHHHhchhhH
Confidence            999999999876644333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=7.5e-30  Score=237.81  Aligned_cols=165  Identities=30%  Similarity=0.577  Sum_probs=149.3

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      .|+++|..+||||||+++|..+.|...+.+|++.++....+.+   ++..+.+++|||+|+++|..++..+++++|++|+
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~---~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl   78 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL---RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL   78 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE---CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence            5889999999999999999999999989999999998888887   8888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      |||++++.||+++..|+..+...    ...+.|++||+||+|+.+ +++..++++++++++....|++|||++|.||+++
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~  154 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence            99999999999999999988766    356799999999999976 7888889999998863334999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy14768        401 MNFLVDRIICSKR  413 (452)
Q Consensus       401 f~~i~~~i~~~~~  413 (452)
                      |+++++.+.+...
T Consensus       155 F~~l~~~~~~~~~  167 (202)
T cd04120         155 FLKLVDDILKKMP  167 (202)
T ss_pred             HHHHHHHHHHhCc
Confidence            9999998876533

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.97  E-value=2.5e-30  Score=268.75  Aligned_cols=292  Identities=16%  Similarity=0.122  Sum_probs=193.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TPS  170 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~  170 (452)
                      ++|+|||++|||||||+|++++.+.+ ....+++++++....+.+......+.++.+...                 ...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            58999999999999999999998865 455677777777777766666666666665543                 223


Q ss_pred             eeEEEEcCCCCCchhhhhhh-------------cccccccccCCCcccccee----eeecccccCCccceeeeeeccccC
Q psy14768        171 YLILITGDSTVGKTSYVQGF-------------VQNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCTL  233 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~l  233 (452)
                      ..++||+|+..|.+.....+             +-|+.|.........+++.    ..+.++..++.++...+.......
T Consensus        82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093         82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence            47999999999888654322             1244443211111111111    133334444444332211111101


Q ss_pred             C-----CCCCCcccEEEeeecccCCcceeeecccc-ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---
Q psy14768        234 S-----PIQIPTYPILITGDSTVGKTSYVQGFVQN-KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR---  304 (452)
Q Consensus       234 ~-----~~~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~---  304 (452)
                      .     ......++|+++|.+|+|||||+|++++. .......++++.+.....+..   ++  ..+.+|||||..+   
T Consensus       162 ~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~---~~--~~~~lvDT~G~~~~~~  236 (435)
T PRK00093        162 PEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER---DG--QKYTLIDTAGIRRKGK  236 (435)
T ss_pred             CccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE---CC--eeEEEEECCCCCCCcc
Confidence            0     11234689999999999999999999974 456677788888777666655   44  4577899999643   


Q ss_pred             -------hhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccH---HH
Q psy14768        305 -------YICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEI---NE  373 (452)
Q Consensus       305 -------~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~---e~  373 (452)
                             |..++ ..+++.+|++|+|+|++++.+.++...+.......        +|++||+||||+.+.....   ++
T Consensus       237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~--------~~~ivv~NK~Dl~~~~~~~~~~~~  308 (435)
T PRK00093        237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAG--------RALVIVVNKWDLVDEKTMEEFKKE  308 (435)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC--------CcEEEEEECccCCCHHHHHHHHHH
Confidence                   22222 34788999999999999999998876654444433        8999999999997521111   12


Q ss_pred             HHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        374 IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       374 ~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      +..........+++++||++|.|++++|+.+.+.+...+.
T Consensus       309 ~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~  348 (435)
T PRK00093        309 LRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANR  348 (435)
T ss_pred             HHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence            2222223345569999999999999999999988766543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.97  E-value=2.1e-30  Score=283.34  Aligned_cols=292  Identities=16%  Similarity=0.126  Sum_probs=195.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TP  169 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~  169 (452)
                      ..+|+|||+||||||||||++++.+++ ....+++++++......+....+...++.+...                 ..
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  354 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL  354 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence            468999999999999999999998775 556677777776666655555555555555331                 23


Q ss_pred             ceeEEEEcCCCCCchhhhhhhc-------------ccccccccCCCcccccee----eeecccccCCccceeeeeecccc
Q psy14768        170 SYLILITGDSTVGKTSYVQGFV-------------QNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCT  232 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~-------------~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~  232 (452)
                      ...++||.|+..|.+.....++             -|+.|.........+++.    ..+.++..++.++...+......
T Consensus       355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~  434 (712)
T PRK09518        355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDS  434 (712)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence            3589999999999887665432             245543221111112211    23345555565554332222111


Q ss_pred             CCC----C----CCCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        233 LSP----I----QIPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       233 l~~----~----~~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      +..    .    ....++|+++|++|||||||+|++++... .....++++.+.....+.+   ++.  .+.||||+|+.
T Consensus       435 l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~---~~~--~~~liDTaG~~  509 (712)
T PRK09518        435 LKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI---DGE--DWLFIDTAGIK  509 (712)
T ss_pred             cccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE---CCC--EEEEEECCCcc
Confidence            111    0    12358999999999999999999998653 4455677777887766666   554  46699999963


Q ss_pred             ----------hhhhhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHH
Q psy14768        304 ----------RYICMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN  372 (452)
Q Consensus       304 ----------~~~~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e  372 (452)
                                .|..++ ..+++.+|++|+|+|++++.+++++..+......        ++|++||+||||+.+.. ..+
T Consensus       510 ~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~--------~~piIiV~NK~DL~~~~-~~~  580 (712)
T PRK09518        510 RRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA--------GRALVLVFNKWDLMDEF-RRQ  580 (712)
T ss_pred             cCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--------CCCEEEEEEchhcCChh-HHH
Confidence                      233333 3457899999999999999999998765443332        48999999999997521 112


Q ss_pred             HHH-HHHH---HcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        373 EIE-AVCH---QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       373 ~~~-~~~~---~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ..+ .+..   ...+.+.+++||++|.||+++|+.+.+.+.+...
T Consensus       581 ~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        581 RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            222 2222   2344557999999999999999999998876543

>KOG0086|consensus

Probab=99.97  E-value=2.5e-30  Score=220.10  Aligned_cols=170  Identities=29%  Similarity=0.589  Sum_probs=160.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .-+|++++|+.|.|||+|+.+|+.+.|-.+...|+|.+|..+.+.+   .++.++++||||+|||+|++....||+.|-+
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV---GgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV---GGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee---cCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            4589999999999999999999999999999999999999999999   9999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      .+||||+++..||+.+..|+..++..    ..+++-+||+|||.||.+ +++...++..|+++.... |.|+||++|.||
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~l----As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flETSa~TGeNV  159 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTL----ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENV  159 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhh----CCCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeeecccccccH
Confidence            99999999999999999999999888    778899999999999988 999999999999999987 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhH
Q psy14768        398 EDSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~~~  416 (452)
                      ++.|-...+.|+.+-...+
T Consensus       160 EEaFl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  160 EEAFLKCARTILNKIESGE  178 (214)
T ss_pred             HHHHHHHHHHHHHHHhhcC
Confidence            9999999999998765544

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=6.1e-30  Score=236.09  Aligned_cols=165  Identities=28%  Similarity=0.523  Sum_probs=150.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|..+||||||+.+|..+.+...+.++++.++....+.+   ++..+.+.+|||+|+++|..++..+++++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL---DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            3589999999999999999999998888888889999988777777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|||||++++.||+.+..|+.++...     ..+.|+||||||.|+.+ +.+..++++.+++..++. |++|||++|.||
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~-----~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~e~SAk~g~~V  155 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEH-----APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FFEVSPLCNFNI  155 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EEEecCCCCCCH
Confidence            99999999999999999999999765     25799999999999976 788899999999999875 999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14768        398 EDSMNFLVDRIICSK  412 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~  412 (452)
                      +++|+++++.+...+
T Consensus       156 ~~~F~~l~~~i~~~~  170 (189)
T cd04121         156 TESFTELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998886543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=1.5e-29  Score=239.99  Aligned_cols=164  Identities=21%  Similarity=0.338  Sum_probs=147.3

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|+++||||||+++|+.+.|...+.+|++.++. ..+.+   ++..+.+.||||+|+++|..++..+|+++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~---~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLET---EEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEE---CCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            4589999999999999999999999999999999987774 35666   8899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|||||+++..||+.+ ..|+..+...     .++.|+||||||.||.+             +.+..++++++++++++.
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~-----~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~  162 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDY-----CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE  162 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence            9999999999999985 7899998875     24689999999999853             468899999999999986


Q ss_pred             EEEEecCCCCc-cHHHHHHHHHHHHHHh
Q psy14768        385 SWIEVSSKEHL-MIEDSMNFLVDRIICS  411 (452)
Q Consensus       385 ~~~evSAktg~-nv~~lf~~i~~~i~~~  411 (452)
                      .|+||||++|. ||+++|..++..+.+.
T Consensus       163 ~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         163 VYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            69999999997 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=2.9e-29  Score=230.28  Aligned_cols=163  Identities=24%  Similarity=0.416  Sum_probs=146.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|+++||||||+++|+.+.+...+.||++.++. ..+.+   ++..+.+.||||+|+++|..++..+++++|+
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~---~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~   79 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   79 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE---CCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence            3589999999999999999999999999999999987664 45666   8889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|||||++++.||+.+ ..|+..+...     .++.|++|||||.||.+             +.+..++++++++++++.
T Consensus        80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~-----~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~  154 (182)
T cd04172          80 VLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAA  154 (182)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHH-----CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence            9999999999999997 7899999876     25689999999999853             358899999999999976


Q ss_pred             EEEEecCCCCcc-HHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLM-IEDSMNFLVDRIIC  410 (452)
Q Consensus       385 ~~~evSAktg~n-v~~lf~~i~~~i~~  410 (452)
                      +|+||||++|.| |+++|..+++.+++
T Consensus       155 ~~~E~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         155 TYIECSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             EEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence            699999999998 99999999997654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0088|consensus

Probab=99.96  E-value=3.1e-30  Score=220.75  Aligned_cols=169  Identities=31%  Similarity=0.551  Sum_probs=158.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+|++++|..-||||||+-+++.++|......|+...|..+.+.+   .+....+.||||+||++|..+-+.||+.++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~---ed~ra~L~IWDTAGQErfHALGPIYYRgSn   87 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV---EDCRADLHIWDTAGQERFHALGPIYYRGSN   87 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc---ccceeeeeeeeccchHhhhccCceEEeCCC
Confidence            34689999999999999999999999999999999999999999888   788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|||||++|..||+.++.|..+++..    ....+-++|||||+||.+ +.++.++++.+++..|.. |+++||+.+.+
T Consensus        88 GalLVyDITDrdSFqKVKnWV~Elr~m----lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y~eTSAk~N~G  162 (218)
T KOG0088|consen   88 GALLVYDITDRDSFQKVKNWVLELRTM----LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-YMETSAKDNVG  162 (218)
T ss_pred             ceEEEEeccchHHHHHHHHHHHHHHHH----hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-heecccccccC
Confidence            999999999999999999999999998    456688999999999988 999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy14768        397 IEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~  414 (452)
                      |.++|+.+.+.+++...+
T Consensus       163 i~elFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999988876543

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=5e-29  Score=227.48  Aligned_cols=160  Identities=29%  Similarity=0.496  Sum_probs=144.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +|++++|.++||||||+.+|+.+.|...+.+|++.++. ..+..   ++..+.+.||||+|+++|..++..+++++|++|
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~---~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i   77 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSV---DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   77 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEE---CCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence            68999999999999999999999999899999987664 45556   888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C----------cccHHHHHHHHHHcCCCEEEE
Q psy14768        321 IMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R----------QVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       321 lV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----------~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ||||+++..||+++ ..|+..+...     ..+.|++|||||+||.+ +          .+..++++++++.++...|+|
T Consensus        78 lvyd~~~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E  152 (176)
T cd04133          78 LAFSLISRASYENVLKKWVPELRHY-----APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE  152 (176)
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999998 6899998765     24799999999999965 2          478899999999999866999


Q ss_pred             ecCCCCccHHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~  409 (452)
                      |||++|.||+++|+.+++.++
T Consensus       153 ~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         153 CSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CCCCcccCHHHHHHHHHHHHh
Confidence            999999999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=8.3e-29  Score=233.32  Aligned_cols=167  Identities=27%  Similarity=0.407  Sum_probs=148.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      +||+++|++|||||||+++|.++.+...+.+|++.++....+.+   ++ ..+.+.||||+|++.|..++..+++++|++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~---~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~i   77 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTL---PGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAV   77 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEe---CCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEE
Confidence            58999999999999999999999999999999999988777776   43 578999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+++..|+..+.+... ....+.|++||+||+|+.+ +.+..++..++++.++.. ++++||++|.||+
T Consensus        78 ilV~D~t~~~s~~~~~~w~~~l~~~~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~-~~~iSAktg~gv~  155 (215)
T cd04109          78 FLVYDVTNSQSFENLEDWYSMVRKVLK-SSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME-SCLVSAKTGDRVN  155 (215)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcc-ccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence            999999999999999999999987631 1124578999999999976 778888999999998865 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|+++++.+....
T Consensus       156 ~lf~~l~~~l~~~~  169 (215)
T cd04109         156 LLFQQLAAELLGVD  169 (215)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04111 Rab39 Rab39 subfamily

Probab=99.96  E-value=1.2e-28  Score=231.51  Aligned_cols=206  Identities=32%  Similarity=0.550  Sum_probs=164.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++.+...+.+|++.++....+.+.  ++..+.+++|||+|+++|..++..+++++|++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i   79 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE--PGVRIKLQLWDTAGQERFRSITRSYYRNSVGV   79 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC--CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEE
Confidence            4799999999999999999999988888888999998887777652  35678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+++..|+..+....   .....|++||+||+|+.+ +.+..++..++++.++. +|+++||++|.||+
T Consensus        80 ilv~D~~~~~Sf~~l~~~~~~i~~~~---~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~  155 (211)
T cd04111          80 LLVFDITNRESFEHVHDWLEEARSHI---QPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIETSARTGDNVE  155 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEEEeCCCCCCHH
Confidence            99999999999999999999887652   234578999999999977 67888899999999885 49999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhH-HHHhhcccccccccccc--CCCCCCcCCCCCCCCCcc
Q psy14768        399 DSMNFLVDRIICSKRMEE-EAVERKSSIRLSEETLR--DDQPKKLVPADKVSTYCW  451 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~~-~~~~~~~s~~~~~~~~~--~~~~~~~~~~~k~~~~c~  451 (452)
                      ++|+++++.+.+.....+ .....+.+.+.....++  ...-+..+-..-+++|||
T Consensus       156 e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         156 EAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            999999998887754433 34444444444443333  111222222555667665

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=1.2e-28  Score=232.43  Aligned_cols=161  Identities=24%  Similarity=0.433  Sum_probs=138.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.++||||||+++|+.+.+.. +.+|++.++....+       ..+.+.||||+|++.|..++..+++++|++|
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-------~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~I   72 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-------GPYNISIWDTAGREQFHGLGSMYCRGAAAVI   72 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-------eEEEEEEEeCCCcccchhhHHHHhccCCEEE
Confidence            589999999999999999999988864 57888877654432       4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------------------CcccHHHHHHHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------------------RQVEINEIEAVCHQ  380 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------------------~~~~~e~~~~~~~~  380 (452)
                      +|||+++..||+++..|+..+.+.    ...++|+|||+||+|+.+                    +++..++++.++++
T Consensus        73 lV~Dvt~~~Sf~~l~~~~~~l~~~----~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~  148 (220)
T cd04126          73 LTYDVSNVQSLEELEDRFLGLTDT----ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR  148 (220)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence            999999999999999887777654    345789999999999853                    67888999999998


Q ss_pred             cCC-------------CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        381 YNF-------------MSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       381 ~~~-------------~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ++.             .+|+||||++|.||+++|..+++.+.....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~  194 (220)
T cd04126         149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL  194 (220)
T ss_pred             hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            762             359999999999999999999998875433

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=1.1e-28  Score=225.73  Aligned_cols=160  Identities=23%  Similarity=0.406  Sum_probs=143.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|+++||||||+++|.++.+...+.+|++.++. ..+.+   ++..+.+.||||+|+++|..++..+++++|++|
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i   77 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEI---DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL   77 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEE---CCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence            68999999999999999999999999999999987764 45666   888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      +|||++++.||+++ ..|+..+...     .++.|++|||||.||.+             +.+..+++++++++++...|
T Consensus        78 lvfdit~~~Sf~~~~~~w~~~i~~~-----~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~  152 (178)
T cd04131          78 ICFDISRPETLDSVLKKWRGEIQEF-----CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIY  152 (178)
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHH-----CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEE
Confidence            99999999999996 7899998876     25789999999999853             35888999999999998669


Q ss_pred             EEecCCCCcc-HHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLM-IEDSMNFLVDRII  409 (452)
Q Consensus       387 ~evSAktg~n-v~~lf~~i~~~i~  409 (452)
                      +||||++|.| |+++|..+++..+
T Consensus       153 ~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         153 LECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             EECccCcCCcCHHHHHHHHHHHHh
Confidence            9999999995 9999999999654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=1.7e-28  Score=221.24  Aligned_cols=162  Identities=29%  Similarity=0.613  Sum_probs=147.4

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||++++.++.+...+.++++.++....+..   ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   79 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            79999999999999999999999998888889998887777777   888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|+..+...    ...+.|++||+||+|+.+ +.+..+++.++++..++. |+++||++|.||++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~e  154 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLECSAKTGENVED  154 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence            999999999999999999988765    346789999999999977 677888999999988875 99999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        400 SMNFLVDRIIC  410 (452)
Q Consensus       400 lf~~i~~~i~~  410 (452)
                      +|.++++.+.+
T Consensus       155 ~f~~l~~~~~~  165 (166)
T cd04122         155 AFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHHhh
Confidence            99999987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=2.2e-28  Score=230.79  Aligned_cols=166  Identities=22%  Similarity=0.403  Sum_probs=145.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|+++||||||+++|..+.|...+.||++.++. ..+.+   ++..+.+.||||+|++.|..+++.+|+++|++|
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~---~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il   77 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI---DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL   77 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE---CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence            68999999999999999999999999999999987764 45566   888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      +|||++++.||+.+. .|..++...     ..+.|+||||||.||.+             ..+..+++..+++.++...|
T Consensus        78 lvfdis~~~Sf~~i~~~w~~~~~~~-----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y  152 (222)
T cd04173          78 ICFDISRPETLDSVLKKWQGETQEF-----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSY  152 (222)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEE
Confidence            999999999999994 577766554     36799999999999953             13778899999999998679


Q ss_pred             EEecCCCCcc-HHHHHHHHHHHHHHhhhhh
Q psy14768        387 IEVSSKEHLM-IEDSMNFLVDRIICSKRME  415 (452)
Q Consensus       387 ~evSAktg~n-v~~lf~~i~~~i~~~~~~~  415 (452)
                      +||||+++.+ |+++|..++...+......
T Consensus       153 ~E~SAk~~~~~V~~~F~~~~~~~~~~~~~~  182 (222)
T cd04173         153 VECSSRSSERSVRDVFHVATVASLGRGHRQ  182 (222)
T ss_pred             EEcCCCcCCcCHHHHHHHHHHHHHhccCCc
Confidence            9999999985 9999999999887755433

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=3.7e-28  Score=229.09  Aligned_cols=167  Identities=30%  Similarity=0.575  Sum_probs=151.3

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|+++||||||+++|.+..+...+.+|++.++....+.+   ++..+.+.||||+|+++|..++..+++.+++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            3589999999999999999999999888888899999998888887   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..++...+...+++. |+++||++|.|+
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~SA~~g~~v  162 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDH----ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLETSALEATNV  162 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHh----CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            99999999999999999999988876    345799999999999976 677788889998888765 999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14768        398 EDSMNFLVDRIICSKR  413 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~  413 (452)
                      +++|++++..+.+...
T Consensus       163 ~~lf~~l~~~i~~~~~  178 (216)
T PLN03110        163 EKAFQTILLEIYHIIS  178 (216)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887543

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=3.6e-28  Score=224.45  Aligned_cols=167  Identities=25%  Similarity=0.492  Sum_probs=143.4

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|.+|||||||+++|+.+.+...+.++++..+. ..+.+   ++..+.+.||||+|+++|..++..+++.+|++|+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il   76 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVV---DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL   76 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEE---CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence            6899999999999999999998888888888876553 34455   7788899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      |||+++..||+.+..|+..+..... ....++|++||+||+|+.+ +.+..++..++++.+++. |+++||++|.||+++
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~~v~~l  154 (190)
T cd04144          77 VYSITSRSTFERVERFREQIQRVKD-ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASAKTNVNVERA  154 (190)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhc-ccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecCCCCCCHHHH
Confidence            9999999999999999988876521 1135789999999999976 677777888888888875 999999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy14768        401 MNFLVDRIICSKRM  414 (452)
Q Consensus       401 f~~i~~~i~~~~~~  414 (452)
                      |+++++.+.+.+..
T Consensus       155 ~~~l~~~l~~~~~~  168 (190)
T cd04144         155 FYTLVRALRQQRQG  168 (190)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999887655444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.96  E-value=3.2e-28  Score=225.00  Aligned_cols=165  Identities=31%  Similarity=0.614  Sum_probs=146.3

Q ss_pred             ccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      +||+++|++|+|||||++++....+.. .+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~   77 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV---DGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL   77 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE---CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence            589999999999999999999888764 67788888887777777   88889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..+|+++..|+..+...    ...++|++||+||+|+.. +.+..++++.+...++.. |+++||++|.|++
T Consensus        78 i~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~Sa~~~~~v~  152 (191)
T cd04112          78 LLLYDITNKASFDNIRAWLTEIKEY----AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVE  152 (191)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            9999999999999999999988876    345789999999999965 667778888998888875 9999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14768        399 DSMNFLVDRIICSKR  413 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~  413 (452)
                      ++|.++++.+.....
T Consensus       153 ~l~~~l~~~~~~~~~  167 (191)
T cd04112         153 LAFTAVAKELKHRKY  167 (191)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=9.2e-28  Score=221.14  Aligned_cols=162  Identities=31%  Similarity=0.627  Sum_probs=146.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|+++||||||+++|.++.+...+.++.+.++....+.+   ++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii   77 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI---ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL   77 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence            58999999999999999999999988778899998887777777   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|+..+...    ....+|++||+||+|+.+ +.+..++...+++..++. |+++||++|.|+++
T Consensus        78 lv~d~~~~~s~~~i~~~~~~i~~~----~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~i~~  152 (188)
T cd04125          78 LVYDVTDQESFENLKFWINEINRY----ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSAKQSINVEE  152 (188)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            999999999999999999998876    345689999999999986 667788888898888874 99999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        400 SMNFLVDRIIC  410 (452)
Q Consensus       400 lf~~i~~~i~~  410 (452)
                      +|+++++.+..
T Consensus       153 ~f~~l~~~~~~  163 (188)
T cd04125         153 AFILLVKLIIK  163 (188)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=3.9e-28  Score=224.55  Aligned_cols=162  Identities=25%  Similarity=0.443  Sum_probs=142.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.++||||||+.+|..+.|...+.+|++.++. ..+.+   ++..+.+.||||+|+++|..++..+++++|++
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~   78 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAV---DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF   78 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEE---CCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence            479999999999999999999999998899999986654 34555   88889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCCCE
Q psy14768        320 IIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNFMS  385 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~~~  385 (452)
                      |+|||++++.||+.+. .|...+...     ..++|++|||||.||.+ +            .+..+++++++++++...
T Consensus        79 ilvydit~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  153 (191)
T cd01875          79 IICFSIASPSSYENVRHKWHPEVCHH-----CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVK  153 (191)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence            9999999999999996 588877654     24799999999999964 1            356788999999998666


Q ss_pred             EEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      |++|||++|.||+++|+++++.+..
T Consensus       154 ~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         154 YLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999988753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=7.3e-28  Score=221.32  Aligned_cols=165  Identities=25%  Similarity=0.450  Sum_probs=142.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||+++|.++.+...+.++++.++... +...  ++..+.+.||||+|+++|..++..+++++|++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii   77 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGP--NGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL   77 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEec--CCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence            4899999999999999999999999888888888776543 3331  367889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      +|||+++..||+++. .|+..+...     ..++|++||+||+|+.+     +.+..+++++++..++..+|+++||++|
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  152 (187)
T cd04132          78 ICYAVDNPTSLDNVEDKWFPEVNHF-----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTM  152 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence            999999999999996 588777654     35789999999999865     3467888999999998856999999999


Q ss_pred             ccHHHHHHHHHHHHHHhhh
Q psy14768        395 LMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~~  413 (452)
                      .||+++|+.+++.+.....
T Consensus       153 ~~v~~~f~~l~~~~~~~~~  171 (187)
T cd04132         153 ENVEEVFDTAIEEALKKEG  171 (187)
T ss_pred             CCHHHHHHHHHHHHHhhhh
Confidence            9999999999999885544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=6.9e-28  Score=217.53  Aligned_cols=163  Identities=31%  Similarity=0.664  Sum_probs=148.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|+|||||++++.+..+...+.++++.++....+.+   ++..+.+++|||+|+++|..++..+++++|++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~   79 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL---DGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE---CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence            489999999999999999999999999999999998887777777   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+.+.    ...++|++||+||+|+.+ +++..+++..++..++.. |+++||++|.|++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  154 (167)
T cd01867          80 ILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIK-FLETSAKANINVE  154 (167)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            9999999999999999999999876    456799999999999986 667788888899988875 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|+++++.+..
T Consensus       155 ~~~~~i~~~~~~  166 (167)
T cd01867         155 EAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=9.4e-28  Score=223.43  Aligned_cols=168  Identities=33%  Similarity=0.612  Sum_probs=150.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|++|||||||+++|.+..+...+.+|++.++....+.+   ++..+.+.||||+|++.|..++..+++++|+
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~   81 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI---NGERVKLQIWDTAGQERFRTITSTYYRGTHG   81 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE---CCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence            3589999999999999999999999888888899998888777777   7788899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...     ....|++||+||+|+.+ ..+..++...++..++.. |+++||++|.||
T Consensus        82 iilv~D~~~~~s~~~~~~~~~~i~~~-----~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~gi  155 (199)
T cd04110          82 VIVVYDVTNGESFVNVKRWLQEIEQN-----CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LFETSAKENINV  155 (199)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEECCCCcCH
Confidence            99999999999999999999988765     35689999999999987 566778888899888865 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy14768        398 EDSMNFLVDRIICSKRME  415 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~~  415 (452)
                      +++|+++.+.++..+...
T Consensus       156 ~~lf~~l~~~~~~~~~~~  173 (199)
T cd04110         156 EEMFNCITELVLRAKKDN  173 (199)
T ss_pred             HHHHHHHHHHHHHhhhcc
Confidence            999999999998665443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=6.2e-28  Score=219.44  Aligned_cols=163  Identities=27%  Similarity=0.435  Sum_probs=144.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||++++..+.+...+.+|++..+. ..+.+   ++..+.+.||||+|+++|..++..+++.+|++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~   77 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARI---DNEPALLDILDTAGQAEFTAMRDQYMRCGEGF   77 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEE---CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEE
Confidence            378999999999999999999999998888888886553 44566   78889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+.+..|...+.+..   ...++|++||+||+|+.+ +++..++..++++.+++. |++|||++|.||+
T Consensus        78 ilv~d~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~~v~  153 (172)
T cd04141          78 IICYSVTDRHSFQEASEFKKLITRVR---LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCP-FFETSAALRHYID  153 (172)
T ss_pred             EEEEECCchhHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCE-EEEEecCCCCCHH
Confidence            99999999999999999988887652   235799999999999976 678888999999988875 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|+++++.+.+
T Consensus       154 ~~f~~l~~~~~~  165 (172)
T cd04141         154 DAFHGLVREIRR  165 (172)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0083|consensus

Probab=99.96  E-value=1.4e-28  Score=204.99  Aligned_cols=161  Identities=31%  Similarity=0.624  Sum_probs=149.3

Q ss_pred             EeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEE
Q psy14768        245 ITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMF  323 (452)
Q Consensus       245 ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~  323 (452)
                      ++|++++|||+|+-+|-..-|. ...++|+|+|+..+.+.+   +++++++++|||+||++|++....||+++|+.+|+|
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~---~~~kvklqiwdtagqerfrsvt~ayyrda~alllly   78 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM---DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLY   78 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc---CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeee
Confidence            6899999999999999876655 567889999999999999   999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHH
Q psy14768        324 DLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       324 D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~  402 (452)
                      |+.+..||++.+.|+.+|..+    ....+.+++++||+|+.. +.+..++.+.+++.++++ |+|+||++|.||+..|.
T Consensus        79 diankasfdn~~~wlsei~ey----~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsaktg~nvd~af~  153 (192)
T KOG0083|consen   79 DIANKASFDNCQAWLSEIHEY----AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKTGFNVDLAFL  153 (192)
T ss_pred             ecccchhHHHHHHHHHHHHHH----HHhhHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccccccHhHHHH
Confidence            999999999999999999988    567788999999999976 888999999999999998 99999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy14768        403 FLVDRIICSKR  413 (452)
Q Consensus       403 ~i~~~i~~~~~  413 (452)
                      .|++.+.+.+.
T Consensus       154 ~ia~~l~k~~~  164 (192)
T KOG0083|consen  154 AIAEELKKLKM  164 (192)
T ss_pred             HHHHHHHHhcc
Confidence            99998876654

>cd04116 Rab9 Rab9 subfamily

Probab=99.95  E-value=1e-27  Score=216.66  Aligned_cols=166  Identities=31%  Similarity=0.588  Sum_probs=148.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|++|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~   80 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV---DGHFVTLQIWDTAGQERFRSLRTPFYRGSDC   80 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE---CCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence            3589999999999999999999999988888889998887777777   8889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||+++..+|+.+..|...+..........++|++||+||+|+.++.+..+++++++++++..+|+++||++|.|+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999999888765332234678999999999997777788899999999987679999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        399 DSMNFLVDR  407 (452)
Q Consensus       399 ~lf~~i~~~  407 (452)
                      ++|+++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0081|consensus

Probab=99.95  E-value=4e-28  Score=207.96  Aligned_cols=170  Identities=29%  Similarity=0.548  Sum_probs=153.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeec------CCeeEEEEEEecCCcchhhhhhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY------GGRPVKLQIWDIAGQDRYICMSRVYY  313 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~------~~~~~~l~l~DtaG~e~~~~~~~~~i  313 (452)
                      -+|.+.+|++||||||++.++..++|....+.|+|+||..+.+.+..-      .+..+.+++|||+|||+|+++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            468889999999999999999999999999999999999888776321      13568999999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ++|-+++|+||+++..||-+++.|+.++..+.   .-++.-|||+|||+||.+ +.++.+++.+++.+++++ |||+||.
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP-YfETSA~  164 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP-YFETSAC  164 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHhh---ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC-eeeeccc
Confidence            99999999999999999999999999998773   346677999999999998 999999999999999998 9999999


Q ss_pred             CCccHHHHHHHHHHHHHHhhh
Q psy14768        393 EHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~~~~  413 (452)
                      +|.||++..+.++..+.++..
T Consensus       165 tg~Nv~kave~LldlvM~Rie  185 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIE  185 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHH
Confidence            999999999999988876543

>cd04127 Rab27A Rab27a subfamily

Probab=99.95  E-value=1.3e-27  Score=217.97  Aligned_cols=167  Identities=32%  Similarity=0.570  Sum_probs=146.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-------cCCeeEEEEEEecCCcchhhhhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------YGGRPVKLQIWDIAGQDRYICMSRVY  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-------~~~~~~~l~l~DtaG~e~~~~~~~~~  312 (452)
                      .+||+++|++|||||||++++.+..+...+.+|++.++....+.+..       ..+..+.+.||||+|+++|..++..+
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF   83 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence            48999999999999999999999999999999999888776665510       01456889999999999999999999


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++++|++|+|||++++.||+++..|+..+....   ...+.|++||+||+|+.+ +.+..+++.++++.++.. |+++||
T Consensus        84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa  159 (180)
T cd04127          84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA---YCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-YFETSA  159 (180)
T ss_pred             hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-EEEEeC
Confidence            999999999999999999999999999887652   235689999999999986 677888899999999875 999999


Q ss_pred             CCCccHHHHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~  410 (452)
                      ++|.|++++|+++++.+.+
T Consensus       160 k~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         160 ATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01865 Rab3 Rab3 subfamily

Probab=99.95  E-value=1.6e-27  Score=214.70  Aligned_cols=161  Identities=35%  Similarity=0.673  Sum_probs=144.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||++++.++.+...+.++++.++....+..   ++..+.+.+|||+|+++|..++..+++++|+++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l   78 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR---NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI   78 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence            68999999999999999999999998888899988887777666   777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||+++..+|+.+..|+..+...    ....+|++||+||+|+.+ +.+..++..++++.+++. ++++||++|.|+++
T Consensus        79 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~  153 (165)
T cd01865          79 LMYDITNEESFNAVQDWSTQIKTY----SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFEASAKENINVKQ  153 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence            999999999999999999998766    345789999999999976 566778888899888875 99999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        400 SMNFLVDRII  409 (452)
Q Consensus       400 lf~~i~~~i~  409 (452)
                      +|++++..+.
T Consensus       154 l~~~l~~~~~  163 (165)
T cd01865         154 VFERLVDIIC  163 (165)
T ss_pred             HHHHHHHHHH
Confidence            9999988754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=99.95  E-value=1.3e-27  Score=214.72  Aligned_cols=159  Identities=30%  Similarity=0.595  Sum_probs=144.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++++|||||+++++++.+...+.+|++.++....+.+   ++..+.+.+|||+|+++|..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   77 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV---DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIF   77 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEE
Confidence            47999999999999999999999998888999999888777777   778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||+++..||+.+..|+..+...    ...+.|+++|+||.|+.+ +.+..++...+++..+.. |++|||++|.||++
T Consensus        78 ~v~d~~~~~sf~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~  152 (161)
T cd04117          78 LVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSACTNSNIKE  152 (161)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            999999999999999999988765    345799999999999976 777888999999988855 99999999999999


Q ss_pred             HHHHHHHH
Q psy14768        400 SMNFLVDR  407 (452)
Q Consensus       400 lf~~i~~~  407 (452)
                      +|++|++.
T Consensus       153 ~f~~l~~~  160 (161)
T cd04117         153 SFTRLTEL  160 (161)
T ss_pred             HHHHHHhh
Confidence            99999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=1.1e-27  Score=218.49  Aligned_cols=159  Identities=24%  Similarity=0.438  Sum_probs=140.3

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.++||||||+++|..+.|...+.||++.++. ..+.+   ++..+.+.||||+|+++|..++..+++++|++|
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~i   77 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI---GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   77 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE---CCEEEEEEEEECCCccchhhhhhhhcccCCEEE
Confidence            68999999999999999999999998899999987764 34555   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      ||||++++.||+++. .|...+...     ..++|++||+||.|+.+             +.+..+++++++++++...|
T Consensus        78 lv~d~~~~~s~~~~~~~w~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~  152 (175)
T cd01874          78 VCFSVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKY  152 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEE
Confidence            999999999999996 598888765     24699999999999853             35677888899998886669


Q ss_pred             EEecCCCCccHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ++|||++|.||+++|+.+++..
T Consensus       153 ~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         153 VECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             EEecCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=1.9e-27  Score=214.12  Aligned_cols=163  Identities=33%  Similarity=0.661  Sum_probs=147.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++++++.+...+.++.+.++....+.+   ++..+.+.+|||+|+++|..++..+++++|++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i   78 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   78 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence            379999999999999999999998888888899998888888777   78889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+.+..|+..+...    ...+.|+++|+||+|+.+ +.+..+++..++..+++. |+++||++|.|++
T Consensus        79 i~v~d~~~~~s~~~l~~~~~~~~~~----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  153 (166)
T cd01869          79 IIVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLETSAKNATNVE  153 (166)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCcCHH
Confidence            9999999999999999999998876    345789999999999876 667788899999988875 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|.++++.+.+
T Consensus       154 ~~~~~i~~~~~~  165 (166)
T cd01869         154 QAFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.95  E-value=1.7e-27  Score=213.65  Aligned_cols=165  Identities=23%  Similarity=0.493  Sum_probs=147.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|+++||||||+++++++.+...+.++++.++....+..   ++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV---RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL   77 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE---CCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence            58999999999999999999999999999999999988888777   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhh-cCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCIL-DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~-~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|||++++.+|+.+..|+..+...... ....+.|+++|+||+|+.+ .....++...++...++. |+++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  156 (168)
T cd04119          78 LVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVN  156 (168)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEEECCCCCCHH
Confidence            999999999999999999999876311 0125699999999999974 667788888899888865 9999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        399 DSMNFLVDRII  409 (452)
Q Consensus       399 ~lf~~i~~~i~  409 (452)
                      ++|+++++.+.
T Consensus       157 ~l~~~l~~~l~  167 (168)
T cd04119         157 EMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04136 Rap_like Rap-like subfamily

Probab=99.95  E-value=1.6e-27  Score=213.39  Aligned_cols=160  Identities=28%  Similarity=0.539  Sum_probs=140.0

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++++.+.+...+.+|++ +.....+.+   ++..+.+.||||+|+++|..++..+++++|+++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEV---DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV   77 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEE---CCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence            6899999999999999999999888888888887 444556666   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||+++..+|+++..|...+....   ...++|++||+||+|+.+ +.+..++...+.+.++. +|+++||++|.|+++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  153 (163)
T cd04136          78 LVYSITSQSSFNDLQDLREQILRVK---DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAKSKINVDE  153 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Confidence            9999999999999999998887652   235799999999999976 56677778888888884 599999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        400 SMNFLVDRI  408 (452)
Q Consensus       400 lf~~i~~~i  408 (452)
                      +|+++++.+
T Consensus       154 l~~~l~~~~  162 (163)
T cd04136         154 VFADLVRQI  162 (163)
T ss_pred             HHHHHHHhc
Confidence            999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04118 Rab24 Rab24 subfamily

Probab=99.95  E-value=5.5e-27  Score=216.69  Aligned_cols=163  Identities=32%  Similarity=0.590  Sum_probs=143.2

Q ss_pred             ccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      +||+++|++|||||||+++|+++.+.. .+.+|++.++....+.+   ++..+.+.+|||+|+++|..++..+++++|++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i   77 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV---GERVVTLGIWDTAGSERYEAMSRIYYRGAKAA   77 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence            489999999999999999999988875 67889988887777777   88889999999999999999998999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      |+|||+++..+|+++..|+..+...     ..++|++||+||+|+.+     +++..+++.+++..++.. ++++||++|
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~  151 (193)
T cd04118          78 IVCYDLTDSSSFERAKFWVKELQNL-----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFETSSKTG  151 (193)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhc-----CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEEeCCCC
Confidence            9999999999999999999988764     24689999999999864     345567788888888765 899999999


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q psy14768        395 LMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~  412 (452)
                      .|++++|+++++.+.+..
T Consensus       152 ~gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         152 QNVDELFQKVAEDFVSRA  169 (193)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999987543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=2e-27  Score=218.11  Aligned_cols=163  Identities=24%  Similarity=0.463  Sum_probs=142.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.++||||||+++|+.+.+...+.+|++.++....+..   ++..+.+.+|||+|+++|..++..+++++|+++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~---~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii   77 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI---RGTEITFSIWDLGGQREFINMLPLVCNDAVAIL   77 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence            58999999999999999999999999889999999998878877   888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC------CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD------RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~------~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      +|||++++.||+++..|+..+.+.    .....| +||+||+|+..      .....++.+++++.++. +|++|||++|
T Consensus        78 lv~D~t~~~s~~~i~~~~~~~~~~----~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g  151 (182)
T cd04128          78 FMFDLTRKSTLNSIKEWYRQARGF----NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-PLIFCSTSHS  151 (182)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh----CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            999999999999999999988775    234466 68899999952      12234677788888885 4999999999


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q psy14768        395 LMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~  412 (452)
                      .||+++|+++++.+.+.+
T Consensus       152 ~~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         152 INVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            999999999999887543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PTZ00369 Ras-like protein; Provisional

Probab=99.95  E-value=3.1e-27  Score=218.04  Aligned_cols=165  Identities=27%  Similarity=0.515  Sum_probs=144.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|+|||||++++.++.+...+.+|++.++ ...+.+   ++..+.+.+|||+|+++|..++..+++.+|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~   79 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVI---DEETCLLDILDTAGQEEYSAMRDQYMRTGQG   79 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEE---CCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence            358999999999999999999999888888888888666 445556   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..+|+++..|+..+.+..   ...+.|++||+||.|+.+ +.+..+++..+.+.++.. |++|||++|.||
T Consensus        80 iilv~D~s~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~Sak~~~gi  155 (189)
T PTZ00369         80 FLCVYSITSRSSFEEIASFREQILRVK---DKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETSAKQRVNV  155 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEeeCCCCCCH
Confidence            999999999999999999998887652   235789999999999865 666777888888888765 999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14768        398 EDSMNFLVDRIICS  411 (452)
Q Consensus       398 ~~lf~~i~~~i~~~  411 (452)
                      +++|+++++.+.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (189)
T PTZ00369        156 DEAFYELVREIRKY  169 (189)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887643

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=2.9e-27  Score=223.47  Aligned_cols=165  Identities=27%  Similarity=0.540  Sum_probs=145.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|.+|||||||+++++.+.+...+.+|++.++....+..   ++..+.+.+|||+|+++|..++..+++.+|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   87 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE---CCeEEEEEEEECCCchhhhhhhHHHccccc
Confidence            55789999999999999999999999998889999998888777766   777899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++|+|||+++..||+.+..|+..+...     ..+.|++|||||+|+.++.+..+++ .+.+..++. |++|||++|.||
T Consensus        88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~-----~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~-~~e~SAk~~~~i  160 (219)
T PLN03071         88 CAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ-YYEISAKSNYNF  160 (219)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCE-EEEcCCCCCCCH
Confidence            999999999999999999999998865     2569999999999997655555555 677776665 999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14768        398 EDSMNFLVDRIICSK  412 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~  412 (452)
                      +++|+++++.+....
T Consensus       161 ~~~f~~l~~~~~~~~  175 (219)
T PLN03071        161 EKPFLYLARKLAGDP  175 (219)
T ss_pred             HHHHHHHHHHHHcCc
Confidence            999999999987653

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=4.2e-27  Score=210.70  Aligned_cols=160  Identities=34%  Similarity=0.690  Sum_probs=150.6

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|+++||||||+++|.++.+...+.+|.+.+.....+..   ++..+.+.|||++|+++|..++..+++++|++|+
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii   77 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI---DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIII   77 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE---TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999999999999999999999888   8999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      |||++++.||+.+..|+..+...    ...+.|++|||||.|+.+ +++..+++++++++++ .+|++|||+++.||.++
T Consensus        78 ~fd~~~~~S~~~~~~~~~~i~~~----~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  152 (162)
T PF00071_consen   78 VFDVTDEESFENLKKWLEEIQKY----KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVKEI  152 (162)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHH----STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHH
T ss_pred             ccccccccccccccccccccccc----ccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHH
Confidence            99999999999999999999988    335699999999999987 8899999999999999 56999999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        401 MNFLVDRII  409 (452)
Q Consensus       401 f~~i~~~i~  409 (452)
                      |..+++.++
T Consensus       153 f~~~i~~i~  161 (162)
T PF00071_consen  153 FQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=5.2e-27  Score=210.89  Aligned_cols=161  Identities=32%  Similarity=0.643  Sum_probs=145.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||++++.++.+...+.++++.++....+..   ++..+.+.+|||+|+++|..++..++++++++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   79 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI---DGKTIKAQIWDTAGQERYRAITSAYYRGAVGA   79 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEE
Confidence            479999999999999999999999888888899999888888877   78888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..+|+++..|+..+...    ...++|++||+||+|+.+ +.+..++...++...+.. |+++||++|.|++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  154 (165)
T cd01868          80 LLVYDITKKQTFENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FIETSALDGTNVE  154 (165)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence            9999999999999999999998876    334689999999999976 667788888888887764 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|++++..+
T Consensus       155 ~l~~~l~~~i  164 (165)
T cd01868         155 EAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04175 Rap1 Rap1 subgroup

Probab=99.95  E-value=4.2e-27  Score=211.45  Aligned_cols=162  Identities=25%  Similarity=0.513  Sum_probs=141.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|.+|+|||||+++++.+.+...+.+|++..+ ...+.+   ++..+.+.+|||+|+++|..++..+++.+|++
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   76 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV---DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGF   76 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE---CCEEEEEEEEECCCcccchhHHHHHHhhCCEE
Confidence            47899999999999999999998888888888887655 345555   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..+|+.+..|+..+....   ...+.|++||+||+|+.+ ..+..++..++++.++.. |+++||++|.|++
T Consensus        77 ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  152 (164)
T cd04175          77 VLVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETSAKAKINVN  152 (164)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEeeCCCCCCHH
Confidence            99999999999999999988887542   346799999999999976 556677788888888865 9999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        399 DSMNFLVDRII  409 (452)
Q Consensus       399 ~lf~~i~~~i~  409 (452)
                      ++|.++++.+.
T Consensus       153 ~~~~~l~~~l~  163 (164)
T cd04175         153 EIFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=6e-27  Score=210.76  Aligned_cols=161  Identities=37%  Similarity=0.687  Sum_probs=145.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|+|||||++++..+.+...+.++.+.++....+.+   ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   79 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI---EGKRVKLQIWDTAGQERFRTITQSYYRSANGA   79 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence            489999999999999999999988888888888888887777777   77778999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||++++.+|+.+..|+..+...    ...++|+++|+||+|+.+ +++..+++.++++.++...++++||++|.|++
T Consensus        80 llv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          80 IIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence            9999999999999999999999775    346799999999999976 66778888999999888778999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        399 DSMNFLVDR  407 (452)
Q Consensus       399 ~lf~~i~~~  407 (452)
                      ++|+++++.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0097|consensus

Probab=99.95  E-value=2.6e-27  Score=199.19  Aligned_cols=167  Identities=29%  Similarity=0.596  Sum_probs=157.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      -+|-+|+|+-+||||+|+.+|....|..+-..|+|.+|.+..+.+   .+.+++++||||+||++|+.....||+.+-+.
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev---sgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe---cCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            478899999999999999999999999999999999999999999   99999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||++...++..+..|+...+..    .+++..|+|++||.||.. +.+.++++++|+++.|.. |.++||++|.||+
T Consensus        88 lmvyditrrstynhlsswl~dar~l----tnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle~saktg~nve  162 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLEASAKTGQNVE  162 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhcc----CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEEecccccCcHH
Confidence            9999999999999999999988877    678899999999999988 899999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy14768        399 DSMNFLVDRIICSKRM  414 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~  414 (452)
                      +.|-..++.+.+.-..
T Consensus       163 dafle~akkiyqniqd  178 (215)
T KOG0097|consen  163 DAFLETAKKIYQNIQD  178 (215)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999988876443

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=1.1e-26  Score=210.82  Aligned_cols=162  Identities=28%  Similarity=0.493  Sum_probs=142.9

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|.++||||||+++++++.+...+.+|++.++....+.+   ++..+.+.||||+|+++|..++..+++++|++|+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il   78 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI---LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII   78 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEE
Confidence            7999999999999999999999999999999999988777777   8888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C--cccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R--QVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~--~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |||+++..+|+.+..|+..+.+..   .....|+++|+||+|+.+ +  ....+++..++.+++.. |+++||++|.||+
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~v~  154 (170)
T cd04108          79 VFDLTDVASLEHTRQWLEDALKEN---DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YWSVSALSGENVR  154 (170)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EEEEECCCCCCHH
Confidence            999999999999999999876541   234578999999999965 2  23466777888888875 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|+.+++.+.+
T Consensus       155 ~lf~~l~~~~~~  166 (170)
T cd04108         155 EFFFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=1.3e-26  Score=209.46  Aligned_cols=163  Identities=29%  Similarity=0.620  Sum_probs=147.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||++++++..+...+.++.+.++....+..   ++..+.+.+|||+|+++|..++..+++++|++
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---DGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            489999999999999999999998888888888898888777777   78888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+++..|+..+...    ...++|++||+||+|+.+ ..+..++++.++...+.. |+++||+++.||+
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~  155 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FMETSAKTASNVE  155 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            9999999999999999999999876    346799999999999975 667788888898888776 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|.++++.+.+
T Consensus       156 ~~~~~~~~~~~~  167 (168)
T cd01866         156 EAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=6.8e-27  Score=213.06  Aligned_cols=158  Identities=25%  Similarity=0.423  Sum_probs=138.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+.+++.+.+...+.++++. .....+..   ++..+.+.||||+|++.|..++..+++++|++|
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL   77 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEE---CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence            68999999999999999999999998888898864 33445555   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      +|||++++.||+++. .|+..+...     ..+.|++||+||.|+.+             +.+..+++.+++++++...|
T Consensus        78 lv~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  152 (174)
T cd01871          78 ICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  152 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence            999999999999995 688877664     24799999999999954             24778899999999997669


Q ss_pred             EEecCCCCccHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~  407 (452)
                      ++|||++|.||+++|+.+++.
T Consensus       153 ~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         153 LECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             EEecccccCCHHHHHHHHHHh
Confidence            999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.95  E-value=1e-26  Score=207.38  Aligned_cols=160  Identities=29%  Similarity=0.556  Sum_probs=139.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++|+++.+...+.++++..+ ...+.+   ++..+.+.+|||+|+++|..++..+++.+|+++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i   77 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   77 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE---CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence            6899999999999999999999888888888887554 444555   777888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|||+++..+|+++..|+..+.+..   ...++|++||+||+|+.++....+++.+++..++.. ++++||++|.|++++
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l  153 (162)
T cd04138          78 CVFAINSRKSFEDIHTYREQIKRVK---DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETSAKTRQGVEEA  153 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEecCCCCCCHHHH
Confidence            9999999999999999988887652   235789999999999987666777888888888875 999999999999999


Q ss_pred             HHHHHHHH
Q psy14768        401 MNFLVDRI  408 (452)
Q Consensus       401 f~~i~~~i  408 (452)
                      |+++++.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04138         154 FYTLVREI  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=9.1e-27  Score=208.46  Aligned_cols=159  Identities=33%  Similarity=0.656  Sum_probs=144.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||++++++..+...+.++.+.++....+.+   ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i   77 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV---GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL   77 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE---CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence            58999999999999999999999988888899998888877777   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++..++...++. |+++||+++.|+++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  152 (161)
T cd04113          78 LVYDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLETSALTGENVEE  152 (161)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEEECCCCCCHHH
Confidence            999999999999999999988766    456799999999999976 677888899999998854 99999999999999


Q ss_pred             HHHHHHHH
Q psy14768        400 SMNFLVDR  407 (452)
Q Consensus       400 lf~~i~~~  407 (452)
                      +|+++++.
T Consensus       153 ~~~~~~~~  160 (161)
T cd04113         153 AFLKCARS  160 (161)
T ss_pred             HHHHHHHh
Confidence            99999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=2.6e-26  Score=215.60  Aligned_cols=164  Identities=29%  Similarity=0.617  Sum_probs=148.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++++|||||++++++..+...+.++++.++....+.+   ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~---~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI---DNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            589999999999999999999998888888899998888777777   78888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..+|+.+..|+..+...    .....|+++|+||+|+.+ +.+..++++++++.+++. |+++||+++.||+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~  157 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVE  157 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            9999999999999999998887665    345799999999999976 677888999999998875 9999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14768        399 DSMNFLVDRIICS  411 (452)
Q Consensus       399 ~lf~~i~~~i~~~  411 (452)
                      ++|+++++.+.+.
T Consensus       158 e~f~~l~~~~~~~  170 (210)
T PLN03108        158 EAFIKTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>cd04176 Rap2 Rap2 subgroup

Probab=99.95  E-value=1.1e-26  Score=208.47  Aligned_cols=161  Identities=25%  Similarity=0.524  Sum_probs=139.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|.+|+|||||+++++.+.+...+.++++ ++....+.+   ++..+.+.||||+|+++|..++..+++++|++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~   76 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV---DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF   76 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE---CCEEEEEEEEECCCcccccchHHHHHhhCCEE
Confidence            37899999999999999999999988888877775 555566666   78888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..||+++..|+..+.+..   ...++|++||+||+|+.+ ..+..++...++..++. +++++||++|.|++
T Consensus        77 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~  152 (163)
T cd04176          77 IVVYSLVNQQTFQDIKPMRDQIVRVK---GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAKSKTMVN  152 (163)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCCCCCCHH
Confidence            99999999999999999988887652   235799999999999965 55666677888888776 49999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|.++++.+
T Consensus       153 ~l~~~l~~~l  162 (163)
T cd04176         153 ELFAEIVRQM  162 (163)
T ss_pred             HHHHHHHHhc
Confidence            9999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=1.4e-26  Score=215.50  Aligned_cols=158  Identities=28%  Similarity=0.585  Sum_probs=140.1

Q ss_pred             eeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeC
Q psy14768        246 TGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDL  325 (452)
Q Consensus       246 vG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~  325 (452)
                      +|.++||||||+++|+.+.+...+.+|++.++....+.+   ++..+.+.||||+|+++|..++..+++++|++|+|||+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~   77 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT---NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV   77 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEEC
Confidence            699999999999999998888888999999998888777   88899999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHH
Q psy14768        326 TNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV  405 (452)
Q Consensus       326 t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~  405 (452)
                      ++..||+.+..|+..+.+.+     .++|++||+||+|+.++.+..+. ..++...++. |++|||++|.||.++|++++
T Consensus        78 t~~~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~-~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       78 TARVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQ-YYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             CChHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccCCHHH-HHHHHHcCCE-EEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998762     47999999999999765555544 3677777766 99999999999999999999


Q ss_pred             HHHHHhhh
Q psy14768        406 DRIICSKR  413 (452)
Q Consensus       406 ~~i~~~~~  413 (452)
                      +.+.....
T Consensus       151 ~~i~~~~~  158 (200)
T smart00176      151 RKLIGDPN  158 (200)
T ss_pred             HHHHhccc
Confidence            99876533

Ran is involved in the active transport of proteins through nuclear pores.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.94  E-value=2.1e-26  Score=206.01  Aligned_cols=158  Identities=30%  Similarity=0.658  Sum_probs=142.0

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC--CeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG--GRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~--~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      +||+++|.+|+|||||++++.++.+...+.++++.++....+.+   .  +..+.+.+|||+|+++|..++..+++++|+
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   77 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL---RQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA   77 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE---cCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence            48999999999999999999999888888899998887766666   4  677899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +++|||++++.+|+.+..|+..+...     ..++|++||+||+|+.. ..+..+++..+++.+++. ++++||++|.|+
T Consensus        78 ~v~v~d~~~~~s~~~l~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  151 (162)
T cd04106          78 CILVFSTTDRESFEAIESWKEKVEAE-----CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKDDFNV  151 (162)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            99999999999999999999988764     25799999999999976 667778889999998875 999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        398 EDSMNFLVDR  407 (452)
Q Consensus       398 ~~lf~~i~~~  407 (452)
                      +++|+++...
T Consensus       152 ~~l~~~l~~~  161 (162)
T cd04106         152 TELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHHh
Confidence            9999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=1.2e-26  Score=214.08  Aligned_cols=160  Identities=24%  Similarity=0.438  Sum_probs=139.3

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|++|||||||+++|.++.+...+.+|++.++. ..+..   ++..+.+.||||+|++.|..++..+++.+|++|+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~---~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il   77 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFV---DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML   77 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEE---CCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence            7999999999999999999999998888888887664 34455   7778999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCCCEEE
Q psy14768        322 MFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       322 V~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~~~~~  387 (452)
                      |||+++..||+.+. .|+..+...     ..+.|++||+||+|+.+ +            .+..+++.+++...+...|+
T Consensus        78 v~dv~~~~sf~~~~~~~~~~i~~~-----~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  152 (189)
T cd04134          78 CFSVDSPDSLENVESKWLGEIREH-----CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYL  152 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence            99999999999996 588888765     24799999999999965 2            34567788888888866699


Q ss_pred             EecCCCCccHHHHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +|||++|.||+++|+++++.++.
T Consensus       153 e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         153 ECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             EccCCcCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998873

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=2e-26  Score=208.15  Aligned_cols=161  Identities=27%  Similarity=0.575  Sum_probs=139.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+..   ++..+.+.+|||+|++.+..++..++..+|++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT---NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAI   77 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCCChhhccccHHHhcCCCEEE
Confidence            58999999999999999999988888888899988887777766   778899999999999999999899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|||++++.+|+.+..|+..+....     .++|++||+||+|+.++.+.. +..++....+. .|+++||++|.||+++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~e~Sa~~~~~v~~~  150 (166)
T cd00877          78 IMFDVTSRVTYKNVPNWHRDLVRVC-----GNIPIVLCGNKVDIKDRKVKA-KQITFHRKKNL-QYYEISAKSNYNFEKP  150 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhcccccCCH-HHHHHHHHcCC-EEEEEeCCCCCChHHH
Confidence            9999999999999999999998762     379999999999997544333 34456655444 4999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy14768        401 MNFLVDRIICS  411 (452)
Q Consensus       401 f~~i~~~i~~~  411 (452)
                      |+++++.+.+.
T Consensus       151 f~~l~~~~~~~  161 (166)
T cd00877         151 FLWLARKLLGN  161 (166)
T ss_pred             HHHHHHHHHhc
Confidence            99999888753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=3.2e-26  Score=205.64  Aligned_cols=161  Identities=23%  Similarity=0.466  Sum_probs=138.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++++++.+...+.++.+.++....+.+   ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF---EGKTILVDFWDTAGQERFQTMHASYYHKAHACI   77 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence            58999999999999999999998888887788877776666666   788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|||++++.+|+++..|+..+...     ..++|++||+||+|+...  ..++...++...++. ++++||++|.|++++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l  149 (161)
T cd04124          78 LVFDVTRKITYKNLSKWYEELREY-----RPEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLP-LYYVSAADGTNVVKL  149 (161)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEECccCchh--HHHHHHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence            999999999999999999998765     246899999999998532  234455666666654 999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy14768        401 MNFLVDRIICSK  412 (452)
Q Consensus       401 f~~i~~~i~~~~  412 (452)
                      |+.+++.+.+++
T Consensus       150 ~~~l~~~~~~~~  161 (161)
T cd04124         150 FQDAIKLAVSYK  161 (161)
T ss_pred             HHHHHHHHHhcC
Confidence            999999887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.94  E-value=3.6e-26  Score=205.08  Aligned_cols=161  Identities=28%  Similarity=0.537  Sum_probs=139.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||++++++..+...+.++++. .....+..   ++..+.+.+|||+|+++|..++..+++.+|+++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i   76 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEI---DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFL   76 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEE---CCEEEEEEEEECCCcccchHHHHHHHhhCCEEE
Confidence            48999999999999999999998888887777763 33445555   778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|...+.+..   ...++|+++|+||+|+.+ +....+++..+++.++. +|+++||++|.|+++
T Consensus        77 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  152 (164)
T smart00173       77 LVYSITDRQSFEEIKKFREQILRVK---DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAKERVNVDE  152 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEeecCCCCCHHH
Confidence            9999999999999999988876652   234689999999999976 56677788888888885 499999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        400 SMNFLVDRII  409 (452)
Q Consensus       400 lf~~i~~~i~  409 (452)
                      +|+++++.+.
T Consensus       153 l~~~l~~~~~  162 (164)
T smart00173      153 AFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999998664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=3e-26  Score=213.18  Aligned_cols=169  Identities=20%  Similarity=0.264  Sum_probs=139.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSRVY  312 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~~~  312 (452)
                      +||+++|.+|||||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..        ....+
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~---~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~   77 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL---SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG   77 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE---CCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence            58999999999999999999999888888899987776666666   88889999999999765431        12345


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHH-cCCCEEEEec
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQ-YNFMSWIEVS  390 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~-~~~~~~~evS  390 (452)
                      ++.+|++|+|||++++.||+.+..|+..+.+... ....++|++||+||+|+.+ +.+..++++.++.+ .++ +|++||
T Consensus        78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~S  155 (198)
T cd04142          78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECS  155 (198)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEec
Confidence            8899999999999999999999999888876520 0136799999999999976 56667777777654 455 499999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        391 SKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      |++|.||+++|+.+++.+....+.
T Consensus       156 ak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         156 AKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCCCCHHHHHHHHHHHhhccCCC
Confidence            999999999999999988866553

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.94  E-value=5.9e-26  Score=203.35  Aligned_cols=161  Identities=29%  Similarity=0.513  Sum_probs=139.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|+|||||+++++++.+...+.++++..+ .....+   ++..+.+.+|||+|+++|..++..+++.+|++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   77 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI---DGQWAILDILDTAGQEEFSAMREQYMRTGEGF   77 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE---CCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence            47999999999999999999999888878878777544 344455   77788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||+++..+|+.+..|...+.+..   ...+.|++||+||+|+.. ..+..++..++++.+++. ++++||++|.||+
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  153 (164)
T cd04145          78 LLVFSVTDRGSFEEVDKFHTQILRVK---DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSAKDRLNVD  153 (164)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeCCCCCCHH
Confidence            99999999999999999998887652   235789999999999976 556777888898888875 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|+++++.+
T Consensus       154 ~l~~~l~~~~  163 (164)
T cd04145         154 KAFHDLVRVI  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.94  E-value=5.7e-26  Score=205.74  Aligned_cols=162  Identities=30%  Similarity=0.570  Sum_probs=144.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-hhhhhhhcCCCE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-CMSRVYYQNSDG  318 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-~~~~~~i~~ad~  318 (452)
                      .+||+++|++|+|||||+++++...+...+.++++.++....+.+   ++..+.+.+|||+|+++|. .++..+++++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~   78 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI---DGERIKVQLWDTAGQERFRKSMVQHYYRNVHA   78 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE---CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence            378999999999999999999998888888899998888777777   8888999999999999887 578889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCC---C
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE---H  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAkt---g  394 (452)
                      +|+|||++++.+|+.+..|...+....   ...++|++||+||+|+.+ +++..++++++++..+.. |+++||++   +
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~  154 (170)
T cd04115          79 VVFVYDVTNMASFHSLPSWIEECEQHS---LPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSEN  154 (170)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhc---CCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCC
Confidence            999999999999999999999887752   235799999999999976 677788888999888765 99999999   8


Q ss_pred             ccHHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDRI  408 (452)
Q Consensus       395 ~nv~~lf~~i~~~i  408 (452)
                      .+|+++|..+++.+
T Consensus       155 ~~i~~~f~~l~~~~  168 (170)
T cd04115         155 DHVEAIFMTLAHKL  168 (170)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=4e-26  Score=206.92  Aligned_cols=159  Identities=26%  Similarity=0.480  Sum_probs=138.7

Q ss_pred             EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEE
Q psy14768        243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIM  322 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV  322 (452)
                      |+++|++|||||||+++|+++.+...+.++++..+. ..+..   ++..+.+.+|||+|+++|..++..+++.+|++|+|
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   76 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEV---DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLIC   76 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEE---CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEE
Confidence            579999999999999999999998888888775553 44555   78889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEEEE
Q psy14768        323 FDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       323 ~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ||+++..||+++. .|+..+...     ..++|++||+||+|+..             +.+..+++.++++.++...|++
T Consensus        77 ~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T smart00174       77 FSVDSPASFENVKEKWYPEVKHF-----CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLE  151 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEE
Confidence            9999999999996 588888765     35799999999999864             2367788889999999866999


Q ss_pred             ecCCCCccHHHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~  410 (452)
                      |||++|.||+++|+.+++.+.+
T Consensus       152 ~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      152 CSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             ecCCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.94  E-value=9.4e-26  Score=201.86  Aligned_cols=162  Identities=38%  Similarity=0.690  Sum_probs=146.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||++++.+..+...+.++++.++....+.+   ++..+.+.+||++|+++|..++..+++.+|++|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   77 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV---DGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999998888888889998888777777   788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+++.+..|+..+...    ...++|+++|+||+|+.. .+...+.++++++..++. ++++||++|.|+++
T Consensus        78 lv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~  152 (164)
T smart00175       78 LVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSAKTNTNVEE  152 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            999999999999999999998877    346799999999999876 667788889999988876 99999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        400 SMNFLVDRIIC  410 (452)
Q Consensus       400 lf~~i~~~i~~  410 (452)
                      +|+++.+.+.+
T Consensus       153 l~~~i~~~~~~  163 (164)
T smart00175      153 AFEELAREILK  163 (164)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

Rab GTPases are implicated in vesicle trafficking.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=211.09  Aligned_cols=166  Identities=31%  Similarity=0.580  Sum_probs=142.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|||||||+++|+++.+ ..+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTV---GGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEE---CCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            358999999999999999999998766 466788888887777776   7788899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        319 CIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      +|+|||+++..+|+++.. |...+....   ...+.|++||+||+|+.. +.+..++...++...++. |+++||+++.|
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~SAk~~~~  164 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL-FLECSAKTREN  164 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            999999999999999975 666665441   234689999999999976 566777888888888775 99999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      ++++|+++++.+.+..
T Consensus       165 v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        165 VEQCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999997654

>cd01861 Rab6 Rab6 subfamily

Probab=99.94  E-value=7.6e-26  Score=202.16  Aligned_cols=159  Identities=32%  Similarity=0.595  Sum_probs=143.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||++++++..+...+.++++.++....+.+   ++..+.+.+|||+|++++..++..+++.+|++|
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii   77 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL---EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   77 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            47999999999999999999999888888999999998888887   777789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|+..+...    ...+.|+++|+||+|+.+ .....++...+.+..+.. ++++||+++.|+++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~  152 (161)
T cd01861          78 VVYDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FIETSAKAGHNVKE  152 (161)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEEeCCCCCCHHH
Confidence            999999999999999999988765    334799999999999955 667778888888888755 99999999999999


Q ss_pred             HHHHHHHH
Q psy14768        400 SMNFLVDR  407 (452)
Q Consensus       400 lf~~i~~~  407 (452)
                      +|+++.+.
T Consensus       153 l~~~i~~~  160 (161)
T cd01861         153 LFRKIASA  160 (161)
T ss_pred             HHHHHHHh
Confidence            99999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04140 ARHI_like ARHI subfamily

Probab=99.94  E-value=7.5e-26  Score=203.84  Aligned_cols=160  Identities=25%  Similarity=0.426  Sum_probs=137.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++++++.+...+.++++..+ ...+..   +...+.+.+|||+|+++|..++..+++.+|++|
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC---SKNICTLQITDTTGSHQFPAMQRLSISKGHAFI   77 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE---CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence            6899999999999999999999988888888877544 333444   667889999999999999999889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||+++..+|+.+..|+..+..... ....++|++||+||+|+.+ +.+..+++..++..++.. |+++||++|.||++
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA~~g~~v~~  155 (165)
T cd04140          78 LVYSVTSKQSLEELKPIYELICEIKG-NNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FMETSAKTNHNVQE  155 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EEEeecCCCCCHHH
Confidence            99999999999999999888776521 1225799999999999976 677777888888888775 99999999999999


Q ss_pred             HHHHHHH
Q psy14768        400 SMNFLVD  406 (452)
Q Consensus       400 lf~~i~~  406 (452)
                      +|++++.
T Consensus       156 ~f~~l~~  162 (165)
T cd04140         156 LFQELLN  162 (165)
T ss_pred             HHHHHHh
Confidence            9999874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01862 Rab7 Rab7 subfamily

Probab=99.94  E-value=1.6e-25  Score=202.11  Aligned_cols=168  Identities=33%  Similarity=0.644  Sum_probs=147.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.+   .+..+.+.+||++|++.|..++..+++++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   77 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV---DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV   77 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE---CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence            48999999999999999999998888888888888887777777   778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|...+..........++|+++|+||+|+.+ .....++.+.+++..+...++++||++|.|+++
T Consensus        78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  157 (172)
T cd01862          78 LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQ  157 (172)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHH
Confidence            9999999999999988988776653333345799999999999984 566778888899988866799999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy14768        400 SMNFLVDRIICS  411 (452)
Q Consensus       400 lf~~i~~~i~~~  411 (452)
                      +|+++++.+.+.
T Consensus       158 l~~~i~~~~~~~  169 (172)
T cd01862         158 AFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.94  E-value=6.7e-26  Score=210.24  Aligned_cols=157  Identities=22%  Similarity=0.329  Sum_probs=129.4

Q ss_pred             cccEEEeeecccCCcceee-ecccc-----ccccccCCccee-eeEEEEE--------EeeecCCeeEEEEEEecCCcch
Q psy14768        240 TYPILITGDSTVGKTSYVQ-GFVQN-----KFLDNYKNTVGV-DFSTKLL--------SHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin-~l~~~-----~~~~~~~~t~~~-d~~~~~i--------~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      .+||+++|+++||||||+. ++.++     .+...+.||++. +......        .+   ++..+.+.||||+|++.
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~---~~~~v~l~iwDTaG~~~   78 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV---DGVSVSLRLWDTFGDHD   78 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee---CCEEEEEEEEeCCCChh
Confidence            4799999999999999995 55443     355677888863 3222221        34   78899999999999986


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----------------
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----------------  366 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----------------  366 (452)
                      +  ++..+++++|++|+|||++++.||+.+. .|+..+...     ..+.|++|||||+||.+                 
T Consensus        79 ~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~  151 (195)
T cd01873          79 K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-----CPRVPVILVGCKLDLRYADLDEVNRARRPLARPI  151 (195)
T ss_pred             h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-----CCCCCEEEEEEchhccccccchhhhccccccccc
Confidence            3  4567899999999999999999999997 598888765     24689999999999852                 


Q ss_pred             ---CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        367 ---RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       367 ---~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                         +.+..++++++++++++ +|+||||++|.||+++|+.++++
T Consensus       152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence               57788999999999998 59999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.94  E-value=1.6e-25  Score=200.41  Aligned_cols=161  Identities=30%  Similarity=0.600  Sum_probs=145.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|++|+|||||+++++++.+...+.++.+.++....+.+   ++..+.+.+||++|+++|..++..+++++|++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   77 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL---DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAA   77 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCchHHHHHHHHHHhccCCEE
Confidence            379999999999999999999999888778888888887778777   88889999999999999999998999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+...    .....|+++|+||+|+.. +....++...++...+.. ++++||++|.|++
T Consensus        78 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~  152 (163)
T cd01860          78 IVVYDITSEESFEKAKSWVKELQRN----ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSAKTGENVN  152 (163)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEECCCCCCHH
Confidence            9999999999999999999998876    346799999999999875 667788888899988855 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|+++++.+
T Consensus       153 ~l~~~l~~~l  162 (163)
T cd01860         153 ELFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0395|consensus

Probab=99.94  E-value=2.2e-25  Score=206.22  Aligned_cols=167  Identities=29%  Similarity=0.510  Sum_probs=154.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||+|+.+|+...|+..|.||+. |.+.+.+.+   ++..+.+.|+||+|++.|..++..+++++|++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v---~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF   78 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTV---DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF   78 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEE---CCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence            58999999999999999999999999999999999 777888888   89999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++||++++..||+.+..++..|.+..   ....+|++|||||+|+.. +++..++++.++..+++. |+|+||+.+.||+
T Consensus        79 ~lVysitd~~SF~~~~~l~~~I~r~~---~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sak~~~~v~  154 (196)
T KOG0395|consen   79 LLVYSITDRSSFEEAKQLREQILRVK---GRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSAKLNYNVD  154 (196)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhh---CcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeeccCCcCHH
Confidence            99999999999999999988885542   345689999999999998 999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy14768        399 DSMNFLVDRIICSKRM  414 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~  414 (452)
                      ++|..+++.+...+..
T Consensus       155 ~~F~~L~r~~~~~~~~  170 (196)
T KOG0395|consen  155 EVFYELVREIRLPREG  170 (196)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999998875443

>cd01892 Miro2 Miro2 subfamily

Probab=99.94  E-value=5.1e-26  Score=206.20  Aligned_cols=162  Identities=17%  Similarity=0.279  Sum_probs=140.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ..+||+++|.+|||||||+++|+++.+. ..+.+|++.++....+.+   ++..+.+.+||++|++.+..++..+++++|
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~---~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d   79 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV---YGQEKYLILREVGEDEVAILLNDAELAACD   79 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE---CCeEEEEEEEecCCcccccccchhhhhcCC
Confidence            3589999999999999999999999888 888999998887777777   788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...      .++|+++|+||+|+.+ +.+..++..++++.++...++++||++|.|
T Consensus        80 ~~llv~d~~~~~s~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T cd01892          80 VACLVYDSSDPKSFSYCAEVYKKYFML------GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS  153 (169)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHhccC------CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence            999999999999999998888765322      3699999999999965 444445567788888875579999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRII  409 (452)
Q Consensus       397 v~~lf~~i~~~i~  409 (452)
                      ++++|+.+++.+.
T Consensus       154 v~~lf~~l~~~~~  166 (169)
T cd01892         154 SNELFTKLATAAQ  166 (169)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.93  E-value=1.8e-25  Score=200.53  Aligned_cols=160  Identities=29%  Similarity=0.485  Sum_probs=139.4

Q ss_pred             ccEEEeeecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      +||+++|+++||||||++++..+  .+...+.++++.++....+.+.  .+..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   78 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD--TDNTVELFIFDSAGQELYSDMVSNYWESPSV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC--CCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence            48999999999999999999864  6778888999988877776662  3567999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..+|+.+..|+..+...     ..++|+++|+||+|+.+ .++..++.+.+...++.. |+++||+++.|+
T Consensus        79 ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  152 (164)
T cd04101          79 FILVYDVSNKASFENCSRWVNKVRTA-----SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTSALRGVGY  152 (164)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEeCCCCCCh
Confidence            99999999999999999999988776     25689999999999976 556666777777777765 999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRI  408 (452)
Q Consensus       398 ~~lf~~i~~~i  408 (452)
                      +++|+.+++.+
T Consensus       153 ~~l~~~l~~~~  163 (164)
T cd04101         153 EEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.93  E-value=1.5e-25  Score=215.31  Aligned_cols=165  Identities=28%  Similarity=0.451  Sum_probs=140.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++|+++.+...+.+|++ ++....+.+   ++..+.+.||||+|++.|..++..++..+|++|
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i---~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iI   76 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI---RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFI   76 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE---CCEEEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            5899999999999999999999888888888886 666666666   888899999999999999999888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhh-----cCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCIL-----DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~-----~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      +|||+++..||+++..|+..+......     ....++|+|||+||+|+.+ +++..+++.+++.......|+++||++|
T Consensus        77 lVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg  156 (247)
T cd04143          77 LVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKN  156 (247)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            999999999999999998888654110     1235799999999999976 6778888888876544445999999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDRII  409 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~  409 (452)
                      .||+++|++++....
T Consensus       157 ~gI~elf~~L~~~~~  171 (247)
T cd04143         157 SNLDEMFRALFSLAK  171 (247)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999998654

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=99.93  E-value=2.8e-25  Score=200.65  Aligned_cols=164  Identities=26%  Similarity=0.519  Sum_probs=143.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|.+|+|||||++++.++.+...+.++++..+ ...+.+   ++..+.+.+|||+|+++|..++..+++.++++
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   76 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEI---DGRQCDLEILDTAGTEQFTAMRELYIKSGQGF   76 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEE---CCEEEEEEEEeCCCcccchhhhHHHHhhCCEE
Confidence            36899999999999999999999888888888887554 455556   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||++++.+++.+..|...+.+..   ...++|+++|+||.|+.+ +....++...+.+.++..+++++||+++.|++
T Consensus        77 vlv~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~  153 (168)
T cd04177          77 LLVYSVTSEASLNELGELREQVLRIK---DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD  153 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence            99999999999999999988887642   345799999999999976 66677788888888886669999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|++++..++.
T Consensus       154 ~~f~~i~~~~~~  165 (168)
T cd04177         154 EVFIDLVRQIIC  165 (168)
T ss_pred             HHHHHHHHHHhh
Confidence            999999987764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.93  E-value=2.1e-25  Score=202.60  Aligned_cols=157  Identities=24%  Similarity=0.461  Sum_probs=136.4

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +|++++|++|+|||||++++.++.+...+.+|. .+.....+.+   ++..+.+.+|||+|+++|..++..+++++|++|
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i   76 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLV---DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL   76 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE---CCEEEEEEEEECCCChhhccccccccCCCcEEE
Confidence            589999999999999999999988888887776 4555556666   778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      +|||++++.+|+.+. .|+..+...     ..++|+++|+||+|+..             +.+..+++..+++..+...|
T Consensus        77 ~v~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~  151 (173)
T cd04130          77 LCFSVVNPSSFQNISEKWIPEIRKH-----NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEY  151 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeE
Confidence            999999999999985 688877754     24689999999999852             45677889999999998679


Q ss_pred             EEecCCCCccHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~  406 (452)
                      +++||++|.||+++|+.++.
T Consensus       152 ~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         152 IECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             EEEeCCCCCCHHHHHHHHHh
Confidence            99999999999999998875

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01863 Rab18 Rab18 subfamily

Probab=99.93  E-value=2.8e-25  Score=198.65  Aligned_cols=160  Identities=33%  Similarity=0.605  Sum_probs=142.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   77 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV---DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI   77 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence            58999999999999999999998887778889988887777766   778899999999999999988899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|||++++.+|+.+..|+..+....   ...+.|+++|+||+|+.......++..++....++. |+++||++|.|++++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~  153 (161)
T cd01863          78 LVYDVTRRDTFTNLETWLNELETYS---TNNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSAKTRDGVQQA  153 (161)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhC---CCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEecCCCCCHHHH
Confidence            9999999999999999999887763   346799999999999987666778888888888765 999999999999999


Q ss_pred             HHHHHHH
Q psy14768        401 MNFLVDR  407 (452)
Q Consensus       401 f~~i~~~  407 (452)
                      |+++++.
T Consensus       154 ~~~~~~~  160 (161)
T cd01863         154 FEELVEK  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.93  E-value=1.7e-25  Score=200.61  Aligned_cols=154  Identities=21%  Similarity=0.334  Sum_probs=129.0

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+.+++.+.+...+.++ +.++ ...+.+   ++..+.+.+|||+|++.     ..+++++|+++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~---~~~~~~l~i~D~~g~~~-----~~~~~~~~~~i   70 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLV---DGQSHLLLIRDEGGAPD-----AQFASWVDAVI   70 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEE---CCEEEEEEEEECCCCCc-----hhHHhcCCEEE
Confidence            47999999999999999999988887665444 4344 355666   88889999999999975     34678899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|||+++..||+.+..|+..+....   ...+.|++||+||.|+..   +.+..++++++++..+...|++|||++|.||
T Consensus        71 lv~d~~~~~sf~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i  147 (158)
T cd04103          71 FVFSLENEASFQTVYNLYHQLSSYR---NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNV  147 (158)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCH
Confidence            9999999999999999999987662   235689999999999852   6788888999998875445999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        398 EDSMNFLVDR  407 (452)
Q Consensus       398 ~~lf~~i~~~  407 (452)
                      +++|..+++.
T Consensus       148 ~~~f~~~~~~  157 (158)
T cd04103         148 ERVFQEAAQK  157 (158)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04123 Rab21 Rab21 subfamily

Probab=99.93  E-value=4.6e-25  Score=196.60  Aligned_cols=160  Identities=33%  Similarity=0.603  Sum_probs=141.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|+|||||++++++..+...+.++++.++....+..   .+..+.+.+||++|++.+..++..++.++|+++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   77 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI---GGKRIDLAIWDTAGQERYHALGPIYYRDADGAI   77 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE---CCEEEEEEEEECCchHHHHHhhHHHhccCCEEE
Confidence            58999999999999999999998887777778877777777766   677789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+++.+..|...+...    ...++|+++|+||+|+.. ++...+++.++....+.. ++++||+++.|+++
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gi~~  152 (162)
T cd04123          78 LVYDITDADSFQKVKKWIKELKQM----RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSAKTGKGIEE  152 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            999999999999999999998876    334799999999999986 666778888888888776 89999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        400 SMNFLVDRI  408 (452)
Q Consensus       400 lf~~i~~~i  408 (452)
                      +|+++.+.+
T Consensus       153 ~~~~l~~~~  161 (162)
T cd04123         153 LFLSLAKRM  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04135 Tc10 TC10 subfamily

Probab=99.93  E-value=4.9e-25  Score=199.76  Aligned_cols=159  Identities=24%  Similarity=0.425  Sum_probs=137.3

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|+|||||+++|..+.+...+.++++.. ....+..   ++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   76 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTV---GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   76 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEE---CCEEEEEEEEeCCCcccccccccccCCCCCEEE
Confidence            489999999999999999999988887777776533 3445555   778888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      +|||++++.+|+++. .|...+...     ..++|++||+||+|+.+             +.+..+++..+++.++...|
T Consensus        77 lv~~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  151 (174)
T cd04135          77 ICFSVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY  151 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence            999999999999996 587777653     46799999999999854             25667888999999998779


Q ss_pred             EEecCCCCccHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ++|||++|.||+++|+.+++.+
T Consensus       152 ~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         152 VECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             EEecCCcCCCHHHHHHHHHHHh
Confidence            9999999999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.93  E-value=6.1e-25  Score=197.67  Aligned_cols=161  Identities=25%  Similarity=0.424  Sum_probs=135.1

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-hhhhhhhhcCCCEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-ICMSRVYYQNSDGCI  320 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~~~~~~~i~~ad~vI  320 (452)
                      ||+++|++|+|||||+++++.+.+...+.++++..+ ...+.+   ++..+.+.+|||+|++++ ......+++.+|++|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i   76 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI---DGEQVSLEILDTAGQQQADTEQLERSIRWADGFV   76 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE---CCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence            689999999999999999998888777777775444 344555   788889999999999853 445677899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC-ccHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH-LMIE  398 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg-~nv~  398 (452)
                      +|||++++.||+.+..|+..+....  ....++|++||+||+|+.+ +.+..+++..+++.++.. |+++||++| .||+
T Consensus        77 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~~v~  153 (165)
T cd04146          77 LVYSITDRSSFDEISQLKQLIREIK--KRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSAAEDYDGVH  153 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCCCCCchhHH
Confidence            9999999999999999998887651  0135799999999999865 667788888999988865 999999999 5999


Q ss_pred             HHHHHHHHHHH
Q psy14768        399 DSMNFLVDRII  409 (452)
Q Consensus       399 ~lf~~i~~~i~  409 (452)
                      ++|+.+++.+.
T Consensus       154 ~~f~~l~~~~~  164 (165)
T cd04146         154 SVFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999998664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.92  E-value=1e-24  Score=206.31  Aligned_cols=164  Identities=22%  Similarity=0.346  Sum_probs=138.8

Q ss_pred             ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc-CCCE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ-NSDG  318 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~-~ad~  318 (452)
                      +||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+   ++..+.+.+|||+|++.  .+...++. ++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~   75 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV---DGEESTLVVIDHWEQEM--WTEDSCMQYQGDA   75 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE---CCEEEEEEEEeCCCcch--HHHhHHhhcCCCE
Confidence            58999999999999999999887776 666677766777777777   78889999999999982  33455667 9999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..+|+.+..|+..+....   ...++|+|||+||+|+.+ +++..++..+++..+++. |+++||+++.||
T Consensus        76 iilV~d~td~~S~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~SA~~~~gv  151 (221)
T cd04148          76 FVVVYSVTDRSSFERASELRIQLRRNR---QLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIETSAGLQHNV  151 (221)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEecCCCCCCH
Confidence            999999999999999999998887652   235799999999999976 677778888888888875 999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14768        398 EDSMNFLVDRIICSKR  413 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~  413 (452)
                      +++|+++++.+.....
T Consensus       152 ~~l~~~l~~~~~~~~~  167 (221)
T cd04148         152 DELLEGIVRQIRLRRD  167 (221)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999998875443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.92  E-value=1.6e-24  Score=198.99  Aligned_cols=172  Identities=19%  Similarity=0.330  Sum_probs=136.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||++++..+.+... .+|++.++....+...  ++..+.+.+|||+|++++..++..+++++|++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i   79 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG--NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGI   79 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc--CCCceEEEEEECCCcHhHHHHHHHHhccCCEE
Confidence            57999999999999999999998777654 6787777665555431  34678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH--cC---CCEEEEecCCCC
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ--YN---FMSWIEVSSKEH  394 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~--~~---~~~~~evSAktg  394 (452)
                      |+|||+++..+++.+..|+..+....   ...++|++||+||+|+.+ ....+++..+...  ..   ..+++++||++|
T Consensus        80 i~v~D~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  155 (183)
T cd04152          80 VFVVDSVDVERMEEAKTELHKITRFS---ENQGVPVLVLANKQDLPN-ALSVSEVEKLLALHELSASTPWHVQPACAIIG  155 (183)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhhh---hcCCCcEEEEEECcCccc-cCCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence            99999999999999988887776542   234699999999999864 2334445544431  11   124789999999


Q ss_pred             ccHHHHHHHHHHHHHHhhhhhHHH
Q psy14768        395 LMIEDSMNFLVDRIICSKRMEEEA  418 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~~~~~~~  418 (452)
                      .||+++|++|++.+.+.+++.+++
T Consensus       156 ~gi~~l~~~l~~~l~~~~~~~~~~  179 (183)
T cd04152         156 EGLQEGLEKLYEMILKRRKMLRQQ  179 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999998776655544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04114 Rab30 Rab30 subfamily

Probab=99.92  E-value=3.3e-24  Score=193.21  Aligned_cols=161  Identities=30%  Similarity=0.560  Sum_probs=140.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||++++..+.+...+.++++.++....+.+   ++..+.+.+||++|++.|...+..+++.+|++
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI---KGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            489999999999999999999988877777888888887777777   78888999999999999999889999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||++++.+|+.+..|+..+...    ...+.|+++|+||+|+.+ +++..+..+.+.+.... .++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~  158 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQY----ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDM-YYLETSAKESDNVE  158 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHH
Confidence            9999999999999999999888776    345699999999999975 66666667777776664 49999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|+++.+.+
T Consensus       159 ~l~~~i~~~~  168 (169)
T cd04114         159 KLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0393|consensus

Probab=99.92  E-value=1.5e-24  Score=197.02  Aligned_cols=165  Identities=24%  Similarity=0.480  Sum_probs=150.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .+|+.++|+..+|||+|+..+..+.|...|.||+. |-+...+.+   + ++.+.+.+||||||+.|..+++..|.++|+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V---~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv   79 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTV---DDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV   79 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEe---cCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence            47999999999999999999999999999999998 444556666   6 999999999999999999999899999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      ||+||++.++.||+++. .|+.++.+++     ++.|+||||+|.||.+             ..+..++++++++++|..
T Consensus        80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~  154 (198)
T KOG0393|consen   80 FLLCFSVVSPESFENVKSKWIPEIKHHC-----PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAV  154 (198)
T ss_pred             EEEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcc
Confidence            99999999999999985 6999999984     8899999999999973             367889999999999988


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      .|+|+||++..|++++|+.++...+....
T Consensus       155 ~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  155 KYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             eeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            89999999999999999999999987654

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.92  E-value=2.4e-24  Score=195.38  Aligned_cols=159  Identities=23%  Similarity=0.438  Sum_probs=136.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      .||+++|+++||||||+++|.++.+...+.++++..+. ..+.+   ++..+.+.+|||+|++.|..++..++.++|+++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV---DGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   77 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEE---CCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence            58999999999999999999999988888888876553 34555   778889999999999999988888899999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      +|||+++..+|+++. .|...+...     ..++|+++|+||+|+.+             ..+..++.++++..++...|
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~  152 (175)
T cd01870          78 MCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY  152 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEE
Confidence            999999999999985 588877654     34689999999999854             12445778888888887779


Q ss_pred             EEecCCCCccHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ++|||++|.||+++|+++++.+
T Consensus       153 ~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         153 MECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EEeccccCcCHHHHHHHHHHHh
Confidence            9999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.92  E-value=5.3e-24  Score=197.98  Aligned_cols=167  Identities=23%  Similarity=0.416  Sum_probs=135.4

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|.+|||||||+++|+...+...+.+++. +.....+.+   .+..+.+.||||+|++.|..++..++..+|++|+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil   76 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV---GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL   76 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE---CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence            689999999999999999999888777777765 444555555   7777899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHH-HcCCCEEEEecCCCCccHH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCH-QYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~-~~~~~~~~evSAktg~nv~  398 (452)
                      |||++++.+|+.+..|+..+....   ...++|++||+||+|+..  +.+..++..+... ..+. .|+++||++|.||+
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~  152 (198)
T cd04147          77 VYAVDDPESFEEVERLREEILEVK---EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSAKDNENVL  152 (198)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecCCCCCCHH
Confidence            999999999999999988777652   235799999999999965  4444444444443 3343 48999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhH
Q psy14768        399 DSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~~  416 (452)
                      ++|+++++.+........
T Consensus       153 ~l~~~l~~~~~~~~~~~~  170 (198)
T cd04147         153 EVFKELLRQANLPYNLSP  170 (198)
T ss_pred             HHHHHHHHHhhcccccch
Confidence            999999998765444444

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.92  E-value=7.5e-24  Score=189.32  Aligned_cols=161  Identities=28%  Similarity=0.543  Sum_probs=139.8

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|+|||||+++++...+...+.++++..+ ......   ++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   76 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL---DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL   76 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE---CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence            4899999999999999999999888888777776544 444555   778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+|+.+..|+..+....   ...++|+++|+||+|+.+ .....++...+...++.. ++++||++|.|+++
T Consensus        77 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  152 (164)
T cd04139          77 LVFSITDMESFTATAEFREQILRVK---DDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETSAKTRQNVEK  152 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEeeCCCCCCHHH
Confidence            9999999999999999888887752   235799999999999976 556777788888888865 99999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        400 SMNFLVDRII  409 (452)
Q Consensus       400 lf~~i~~~i~  409 (452)
                      +|+++++.+.
T Consensus       153 l~~~l~~~~~  162 (164)
T cd04139         153 AFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHHH
Confidence            9999988775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00154 Rab Rab family

Probab=99.92  E-value=7.3e-24  Score=187.22  Aligned_cols=157  Identities=39%  Similarity=0.718  Sum_probs=141.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+++|||||++++.+..+...+.++++.++....+..   ++..+.+.+||++|++.+..++..+++++|++|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii   77 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI---DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI   77 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE---CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence            47999999999999999999999888888899998888888877   777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC-CCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.+++.+..|+..+...    ....+|+++|+||+|+. ......++..++....+.. ++++||+++.++++
T Consensus        78 ~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~  152 (159)
T cd00154          78 LVYDITNRESFENLDKWLKELKEY----APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKTGENVEE  152 (159)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Confidence            999999999999999999988877    34679999999999997 3667788888999887665 99999999999999


Q ss_pred             HHHHHH
Q psy14768        400 SMNFLV  405 (452)
Q Consensus       400 lf~~i~  405 (452)
                      +|+++.
T Consensus       153 ~~~~i~  158 (159)
T cd00154         153 LFQSLA  158 (159)
T ss_pred             HHHHHh
Confidence            999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=4e-24  Score=193.65  Aligned_cols=156  Identities=23%  Similarity=0.318  Sum_probs=123.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|+|||||++++..+.+. .+.+|++.++..  +.     ...+.+++|||+|+++|..++..+++++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~   79 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT-----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG   79 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE-----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            3589999999999999999999877664 467888876642  22     245889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc---C-CCEEEEecCCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY---N-FMSWIEVSSKEH  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~---~-~~~~~evSAktg  394 (452)
                      +|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ .+..+++.+++...   . ...++++||++|
T Consensus        80 ii~v~D~t~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          80 LIFVVDSADRDRIDEARQELHRIINDR---EMRDALLLVFANKQDLPD-AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             EEEEEeCCchhhHHHHHHHHHHHhcCH---hhcCCcEEEEEECcCCcc-CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            999999999999999887776664321   235689999999999874 34556666654311   1 124799999999


Q ss_pred             ccHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVD  406 (452)
Q Consensus       395 ~nv~~lf~~i~~  406 (452)
                      .||+++|++|.+
T Consensus       156 ~gv~~~~~~l~~  167 (168)
T cd04149         156 DGLYEGLTWLSS  167 (168)
T ss_pred             CChHHHHHHHhc
Confidence            999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=8.6e-24  Score=194.72  Aligned_cols=166  Identities=25%  Similarity=0.426  Sum_probs=139.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      .|++++|++|+|||||++++..+.+...+.++++..+. ..+..   ++..+.+.+|||+|++.|..++..+++++|+++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l   77 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRV---DGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL   77 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEE---CCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence            58999999999999999999987777777777665554 34455   677788999999999988877777889999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----------CcccHHHHHHHHHHcCCCEEEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----------RQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----------~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      +|||+++..+|+.+. .|+..+...     ..++|++||+||+|+.+           +.+..++...+++.++...|++
T Consensus        78 lv~~i~~~~s~~~~~~~~~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  152 (187)
T cd04129          78 IGFAVDTPDSLENVRTKWIEEVRRY-----CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYME  152 (187)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEE
Confidence            999999999999996 588888765     24699999999999843           3455678888999999877999


Q ss_pred             ecCCCCccHHHHHHHHHHHHHHhhhhh
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIICSKRME  415 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~~~~~~  415 (452)
                      |||++|.||+++|+++.+.++..++.+
T Consensus       153 ~Sa~~~~~v~~~f~~l~~~~~~~~~~~  179 (187)
T cd04129         153 CSALTGEGVDDVFEAATRAALLVRKSE  179 (187)
T ss_pred             ccCCCCCCHHHHHHHHHHHHhcccCcc
Confidence            999999999999999998887665543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PTZ00099 rab6; Provisional

Probab=99.91  E-value=3.3e-23  Score=189.10  Aligned_cols=173  Identities=29%  Similarity=0.486  Sum_probs=139.9

Q ss_pred             cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy14768        263 NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLD  342 (452)
Q Consensus       263 ~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~  342 (452)
                      +.|...+.+|++.++....+.+   ++..+.+.||||+|+++|..++..+++.||++|+|||++++.||+++..|+..+.
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~---~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~   79 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYL---DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL   79 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEE---CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            4567788899999998888877   8889999999999999999999999999999999999999999999999999887


Q ss_pred             hhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy14768        343 SKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER  421 (452)
Q Consensus       343 ~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~~~~~~~~  421 (452)
                      ..    ....+|++||+||+||.+ +.+..+++..++..++.. |++|||++|.||+++|++|++.+.+....       
T Consensus        80 ~~----~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~~~~~-------  147 (176)
T PTZ00099         80 NE----RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPNLDNS-------  147 (176)
T ss_pred             Hh----cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHhcccc-------
Confidence            65    335689999999999976 677888888999888876 99999999999999999999887543211       


Q ss_pred             ccccccccccccCCCCCCcCCCCCCCCCccC
Q psy14768        422 KSSIRLSEETLRDDQPKKLVPADKVSTYCWC  452 (452)
Q Consensus       422 ~~s~~~~~~~~~~~~~~~~~~~~k~~~~c~~  452 (452)
                      .+..  .+-.....+...+-+.|.+-+.|-|
T Consensus       148 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  176 (176)
T PTZ00099        148 NSND--ANVVDIQLTNNSNANDKNMLSKCMC  176 (176)
T ss_pred             CCCC--CCccceeccccCCccchhhHhhhcC
Confidence            0111  1111123344444447788888887

>cd04158 ARD1 ARD1 subfamily

Probab=99.91  E-value=1.2e-23  Score=190.40  Aligned_cols=158  Identities=16%  Similarity=0.315  Sum_probs=128.2

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|.++||||||++++.+..+. .+.+|++.++..  +.     ...+.+.+|||+|++++..++..+++++|++|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~--~~-----~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~   72 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET--VE-----YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVF   72 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEE--EE-----ECCEEEEEEECCCChhcchHHHHHhccCCEEEE
Confidence            6899999999999999999987665 467888766642  22     246789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-----CEEEEecCCCCcc
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-----MSWIEVSSKEHLM  396 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-----~~~~evSAktg~n  396 (452)
                      |||++++.+|.++..|+..+.+..   ...+.|++||+||+|+.+ .+..+++++++...+.     ..|++|||++|.|
T Consensus        73 V~D~s~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  148 (169)
T cd04158          73 VVDSSHRDRVSEAHSELAKLLTEK---ELRDALLLIFANKQDVAG-ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG  148 (169)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCh---hhCCCCEEEEEeCcCccc-CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence            999999999999988888776541   234589999999999964 4566677776643221     2478999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy14768        397 IEDSMNFLVDRIICS  411 (452)
Q Consensus       397 v~~lf~~i~~~i~~~  411 (452)
                      |+++|+++++.+...
T Consensus       149 v~~~f~~l~~~~~~~  163 (169)
T cd04158         149 LYEGLDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=1.5e-23  Score=192.24  Aligned_cols=157  Identities=20%  Similarity=0.335  Sum_probs=123.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.++||||||++++..+.+. .+.+|++.++..  +     +...+.+.+|||+|++++..++..+++++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~-----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~   87 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V-----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQG   87 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--E-----EECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            3589999999999999999999877665 467888876532  2     2346889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-------EEEEecC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-------SWIEVSS  391 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-------~~~evSA  391 (452)
                      +|+|||+++..+++.+..++..+....   ...++|++||+||.|+.+. ...++   +...++..       .++++||
T Consensus        88 iI~V~D~s~~~s~~~~~~~l~~~l~~~---~~~~~piilv~NK~Dl~~~-~~~~~---~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         88 LIFVVDSNDRDRVVEARDELHRMLNED---ELRDAVLLVFANKQDLPNA-MNAAE---ITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHhcCH---hhCCCCEEEEEECCCCCCC-CCHHH---HHHHhCccccCCCceEEEeccC
Confidence            999999999999998877666554321   2256999999999999752 23333   33333332       2568999


Q ss_pred             CCCccHHHHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~  410 (452)
                      ++|+||.++|++|++.+.+
T Consensus       161 ~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.91  E-value=7.5e-24  Score=189.99  Aligned_cols=155  Identities=18%  Similarity=0.290  Sum_probs=118.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.++||||||++++..+.+. .+.+|++.++.  .+..     ..+.+.+|||+|+++|..++..+++++|++|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i   72 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   72 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE-----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            48999999999999999999877776 46788887653  2322     4688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-Hc--CCCEEEEecCCCCccH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-QY--NFMSWIEVSSKEHLMI  397 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-~~--~~~~~~evSAktg~nv  397 (452)
                      +|||+++..+|+.+..|+..+....   ...++|++||+||.|+.+.....+....+.. ..  ....++++||++|.||
T Consensus        73 ~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv  149 (159)
T cd04150          73 FVVDSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGL  149 (159)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence            9999999999999988776664321   2346899999999999652211222222211 00  1123679999999999


Q ss_pred             HHHHHHHHH
Q psy14768        398 EDSMNFLVD  406 (452)
Q Consensus       398 ~~lf~~i~~  406 (452)
                      +++|++|.+
T Consensus       150 ~~~~~~l~~  158 (159)
T cd04150         150 YEGLDWLSN  158 (159)
T ss_pred             HHHHHHHhc
Confidence            999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00876 Ras Ras family

Probab=99.90  E-value=3.2e-23  Score=184.26  Aligned_cols=158  Identities=29%  Similarity=0.574  Sum_probs=137.4

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|++|+|||||++++++..+...+.++++ +.....+..   ++..+.+++||++|++.+..++..+++.+|++++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   76 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV---DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL   76 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE---CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence            689999999999999999998878888877777 444555555   6677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      |||++++.+++++..|...+....   ....+|+++|+||+|+.+ .....+++..+....+.. |+++||+++.|++++
T Consensus        77 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~l  152 (160)
T cd00876          77 VYSITDRESFEEIKGYREQILRVK---DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP-FIETSAKDNINIDEV  152 (160)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc-EEEeccCCCCCHHHH
Confidence            999999999999999888887762   225799999999999987 667788888898888855 999999999999999


Q ss_pred             HHHHHHH
Q psy14768        401 MNFLVDR  407 (452)
Q Consensus       401 f~~i~~~  407 (452)
                      |+++++.
T Consensus       153 ~~~l~~~  159 (160)
T cd00876         153 FKLLVRE  159 (160)
T ss_pred             HHHHHhh
Confidence            9999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.90  E-value=8.4e-24  Score=192.76  Aligned_cols=159  Identities=21%  Similarity=0.313  Sum_probs=122.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+++|||||++++..+.+. .+.+|++.++..  +..     ..+.+++|||+|++.+..++..+++++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~-----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~   83 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY-----KNISFTVWDVGGQDKIRPLWRHYYTNTQG   83 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE-----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            3589999999999999999999877664 467888876643  222     45789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKEH  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAktg  394 (452)
                      +|+|||++++.+++....|+..+....   ...++|++||+||.|+.+. ...+++.+.....    ....++++||++|
T Consensus        84 ii~v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177       84 LIFVVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDA-MKAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccC-CCHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            999999999999999888777664331   2356899999999999752 2233333222111    1112568999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDRII  409 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~  409 (452)
                      .||+++|++|.+.+.
T Consensus       160 ~gv~e~~~~l~~~~~  174 (175)
T smart00177      160 DGLYEGLTWLSNNLK  174 (175)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.90  E-value=5.3e-23  Score=187.70  Aligned_cols=163  Identities=29%  Similarity=0.483  Sum_probs=137.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      .||+++|.+|+|||||++++.+..+...+.++++..+ ...+..   ++..+.+.+|||+|+++|..++..++..+|+++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   77 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY---KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI   77 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE---CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence            5899999999999999999999888877878776555 344445   667788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||+++..+|+.+..|+..+.+..   ...+.|+|||+||+|+.. +....++...+.+.++.. ++++||+++.|+.+
T Consensus        78 ~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~  153 (180)
T cd04137          78 LVYSVTSRKSFEVVKVIYDKILDML---GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESSARENENVEE  153 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEeCCCCCCHHH
Confidence            9999999999999998877776542   335689999999999975 556666777888877754 99999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy14768        400 SMNFLVDRIICS  411 (452)
Q Consensus       400 lf~~i~~~i~~~  411 (452)
                      +|.++.+.+...
T Consensus       154 l~~~l~~~~~~~  165 (180)
T cd04137         154 AFELLIEEIEKV  165 (180)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=9.3e-23  Score=192.01  Aligned_cols=166  Identities=27%  Similarity=0.563  Sum_probs=143.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+|++++|++|+|||||+++++.+.+...+.+|++.++....+..   ++..+.+.+|||+|++.|..++..++.+++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT---NCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE---CCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44689999999999999999999888888888999999888877766   788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++|+|||+++..+|+.+..|+..+...     ..+.|+++|+||+|+.++....+. ..+....++. |+++||++|.|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~~i~lv~nK~Dl~~~~~~~~~-~~~~~~~~~~-~~e~Sa~~~~~v  156 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRV-----CENIPIVLVGNKVDVKDRQVKARQ-ITFHRKKNLQ-YYDISAKSNYNF  156 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECccCccccCCHHH-HHHHHHcCCE-EEEEeCCCCCCH
Confidence            999999999999999999999988765     256899999999998764444333 3566666665 999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14768        398 EDSMNFLVDRIICSKR  413 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~  413 (452)
                      +++|.++++.+.....
T Consensus       157 ~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        157 EKPFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999999876544

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.90  E-value=8e-24  Score=190.84  Aligned_cols=152  Identities=23%  Similarity=0.333  Sum_probs=124.2

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      .|+++|.+|||||||+++|.++.+...+.+|++.+..    .+   +...+.+.+|||+|+++|..++..+++++|++|+
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~----~i---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~   73 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV----AI---PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIF   73 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE----EE---eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            3789999999999999999998888888899886542    22   4467889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccH----HHHHHHHHHcCCCEEEEecCCC---
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEI----NEIEAVCHQYNFMSWIEVSSKE---  393 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~----e~~~~~~~~~~~~~~~evSAkt---  393 (452)
                      |||+++..+|..++.|+..+...     ..++|++||+||.|+.. +.+..    .++..++++.++. |+++||++   
T Consensus        74 V~D~t~~~s~~~~~~~l~~~~~~-----~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~Sa~~~~s  147 (164)
T cd04162          74 VVDSADSERLPLARQELHQLLQH-----PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI-LQGTSLDDDGS  147 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhC-----CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceE-EEEeeecCCCC
Confidence            99999999999998888877643     25799999999999875 32211    1234555555654 88888888   


Q ss_pred             ---CccHHHHHHHHHH
Q psy14768        394 ---HLMIEDSMNFLVD  406 (452)
Q Consensus       394 ---g~nv~~lf~~i~~  406 (452)
                         ++||+++|+.++.
T Consensus       148 ~~~~~~v~~~~~~~~~  163 (164)
T cd04162         148 PSRMEAVKDLLSQLIN  163 (164)
T ss_pred             hhHHHHHHHHHHHHhc
Confidence               9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00157 Rho Rho (Ras homology) family

Probab=99.90  E-value=5.5e-23  Score=185.32  Aligned_cols=157  Identities=26%  Similarity=0.484  Sum_probs=132.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|+|||||+++|++..+...+.++....+ ......   ++..+.+++|||+|++.|..++..+++.+|+++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i   76 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTV---DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL   76 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE---CCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence            5899999999999999999999888777777766443 334455   678889999999999998888888899999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-----------cccHHHHHHHHHHcCCCEEE
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-----------QVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-----------~~~~e~~~~~~~~~~~~~~~  387 (452)
                      +|||+++..+|.... .|+..+...     ..++|+++|+||+|+.+ .           .+..++...+...++...|+
T Consensus        77 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  151 (171)
T cd00157          77 ICFSVDSPSSFENVKTKWIPEIRHY-----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM  151 (171)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence            999999999998875 477777665     24799999999999976 2           23567788888998886799


Q ss_pred             EecCCCCccHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~  406 (452)
                      ++||++|.|++++|+++++
T Consensus       152 ~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         152 ECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             EeecCCCCCHHHHHHHHhh
Confidence            9999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.90  E-value=6.2e-23  Score=185.06  Aligned_cols=160  Identities=17%  Similarity=0.286  Sum_probs=125.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||++++.++.+...+. ++..++ .....+   ++..+.+.+|||+|++.+...+..++..+|+++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i   75 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEI-TIPADV---TPERVPTTIVDTSSRPQDRANLAAEIRKANVIC   75 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCC-Ccccce-Eeeeee---cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEE
Confidence            489999999999999999999988865543 333222 233334   667789999999999988877777889999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc--cHHHHHHHHHHcC-CCEEEEecCCCCc
Q psy14768        321 IMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV--EINEIEAVCHQYN-FMSWIEVSSKEHL  395 (452)
Q Consensus       321 lV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~--~~e~~~~~~~~~~-~~~~~evSAktg~  395 (452)
                      +|||++++.+|+.+. .|...+...    . .+.|++||+||+|+.+ ...  ..+++..+...+. ...|+++||++|.
T Consensus        76 lv~d~~~~~s~~~~~~~~~~~i~~~----~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  150 (166)
T cd01893          76 LVYSVDRPSTLERIRTKWLPLIRRL----G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI  150 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh----C-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence            999999999999985 588877765    2 3799999999999976 221  2334444445443 3369999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRIIC  410 (452)
Q Consensus       396 nv~~lf~~i~~~i~~  410 (452)
                      |++++|+.+.+.+.+
T Consensus       151 ~v~~lf~~~~~~~~~  165 (166)
T cd01893         151 NVSEVFYYAQKAVLH  165 (166)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=2.2e-23  Score=191.27  Aligned_cols=160  Identities=22%  Similarity=0.311  Sum_probs=122.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||++++..+.+.. +.+|++.++..  +     +...+.+.+|||+|++++..++..+++++|++
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~-----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i   88 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V-----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGL   88 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E-----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            5899999999999999999998777754 66888866542  2     22457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC----CEEEEecCCCCc
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF----MSWIEVSSKEHL  395 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~----~~~~evSAktg~  395 (452)
                      |+|||+++..+|..+..++..+....   ...++|++||+||.|+.+ ....+++........+    ..++++||++|.
T Consensus        89 I~v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~  164 (182)
T PTZ00133         89 IFVVDSNDRERIGDAREELERMLSED---ELRDAVLLVFANKQDLPN-AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ  164 (182)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhCH---hhcCCCEEEEEeCCCCCC-CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence            99999999999998877666553321   234689999999999864 2222332222111111    135689999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy14768        396 MIEDSMNFLVDRIICS  411 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~  411 (452)
                      |++++|+++.+.+...
T Consensus       165 gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        165 GLYEGLDWLSANIKKS  180 (182)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999877653

>KOG4252|consensus

Probab=99.89  E-value=1.8e-24  Score=189.02  Aligned_cols=173  Identities=25%  Similarity=0.522  Sum_probs=160.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+|++|+|..+|||||++.+++.+-|..++..++|.|+....+.+   +...+.+.+|||+||++|..+...||+.|.
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v---~~Edvr~mlWdtagqeEfDaItkAyyrgaq   94 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV---LIEDVRSMLWDTAGQEEFDAITKAYYRGAQ   94 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh---hHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence            34689999999999999999999999999999999999999998888   788888999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      +.+|||+-+|..||+.+..|++.+...+     ..+|.++|-||+||.+ .++..++++.+++.++.. ++.+|++...|
T Consensus        95 a~vLVFSTTDr~SFea~~~w~~kv~~e~-----~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R-lyRtSvked~N  168 (246)
T KOG4252|consen   95 ASVLVFSTTDRYSFEATLEWYNKVQKET-----ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR-LYRTSVKEDFN  168 (246)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHHHHh-----ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-hhhhhhhhhhh
Confidence            9999999999999999999999998763     6799999999999998 788899999999999987 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHH
Q psy14768        397 IEDSMNFLVDRIICSKRMEEEAV  419 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~~~~~~  419 (452)
                      |..+|..++..+.+..++...+.
T Consensus       169 V~~vF~YLaeK~~q~~kq~~~~~  191 (246)
T KOG4252|consen  169 VMHVFAYLAEKLTQQKKQSLNAN  191 (246)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999888755443

>cd04154 Arl2 Arl2 subfamily

Probab=99.89  E-value=1e-22  Score=184.89  Aligned_cols=157  Identities=25%  Similarity=0.332  Sum_probs=123.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|++|+|||||++++.++.+ ..+.+|++...  ..+.+   +  .+.+.+|||+|++.+..++..+++.+|
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~---~--~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEY---E--GYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEE---C--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            3468999999999999999999997644 45567776433  33334   3  578999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKE  393 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAkt  393 (452)
                      ++++|||++++.+|+....|+..+....   ...++|++||+||+|+.+ ....+++.++....    ...+|+++||++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPG-ALSEEEIREALELDKISSHHWRIQPCSAVT  159 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECccccc-CCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence            9999999999999999888777664321   235799999999999975 22445555555321    233599999999


Q ss_pred             CccHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVD  406 (452)
Q Consensus       394 g~nv~~lf~~i~~  406 (452)
                      |.|++++|++++.
T Consensus       160 g~gi~~l~~~l~~  172 (173)
T cd04154         160 GEGLLQGIDWLVD  172 (173)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.89  E-value=1.6e-22  Score=188.38  Aligned_cols=154  Identities=27%  Similarity=0.398  Sum_probs=125.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee--cCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK--YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~--~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      +||+++|.++||||||+++++++.+...+.+|++.++..+.+.+..  .+++.+.+.||||+|+++|..++..+|+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999989999999888766665510  02467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhh---------------cCCCCCcEEEEEECCCCCC-CcccHH----HHHHHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCIL---------------DNGAMLPCLLLASKCDLPD-RQVEIN----EIEAVC  378 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~---------------~~~~~~piilV~NK~Dl~~-~~~~~e----~~~~~~  378 (452)
                      +|+|||+++..||+++..|+.++.+....               ....++|++|||||.|+.+ +.+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999999764210               0134699999999999976 444443    244577


Q ss_pred             HHcCCCEEEEecCCCCc
Q psy14768        379 HQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       379 ~~~~~~~~~evSAktg~  395 (452)
                      ++++.. .++.+++++.
T Consensus       161 ~~~~~~-~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAE-EINLNCTNGR  176 (202)
T ss_pred             HhcCCc-eEEEecCCcc
Confidence            888887 8888888643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.88  E-value=3.1e-22  Score=178.75  Aligned_cols=156  Identities=21%  Similarity=0.294  Sum_probs=118.4

Q ss_pred             cEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +|+++|++|||||||++++.+.. +...+.+|++.....  +     ....+.+.+|||+|+++|..++..+++.+|++|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   73 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F-----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII   73 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E-----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEE
Confidence            58899999999999999999865 455677888754432  2     234678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH---cC-CCEEEEecCCCCcc
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ---YN-FMSWIEVSSKEHLM  396 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~---~~-~~~~~evSAktg~n  396 (452)
                      +|||++++.+|..+..|+..+.+.... ...++|++||+||+|+.+. ...++.......   .. ...++++||++|.|
T Consensus        74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~NK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g  151 (162)
T cd04157          74 FVIDSSDRLRLVVVKDELELLLNHPDI-KHRRVPILFFANKMDLPDA-LTAVKITQLLGLENIKDKPWHIFASNALTGEG  151 (162)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCccc-ccCCCCEEEEEeCccccCC-CCHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence            999999999998888887776543100 1257999999999999752 122332222211   11 12378999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        397 IEDSMNFLVD  406 (452)
Q Consensus       397 v~~lf~~i~~  406 (452)
                      ++++|++|.+
T Consensus       152 v~~~~~~l~~  161 (162)
T cd04157         152 LDEGVQWLQA  161 (162)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.88  E-value=4e-22  Score=178.02  Aligned_cols=154  Identities=20%  Similarity=0.342  Sum_probs=118.0

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      +|+++|.+|+|||||++++.+..+.. ..+|++.++..  +..    ...+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~   73 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL----EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY   73 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe----CCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999887764 46777755433  222    245789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH--Hc---CCCEEEEecCCCCcc
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH--QY---NFMSWIEVSSKEHLM  396 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~--~~---~~~~~~evSAktg~n  396 (452)
                      |||++++.++..+..|+..+.+..   ...+.|++||+||+|+.+ ....+++.....  .+   ...++++|||++|.|
T Consensus        74 v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (160)
T cd04156          74 VVDSSDEARLDESQKELKHILKNE---HIKGVPVVLLANKQDLPG-ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG  149 (160)
T ss_pred             EEECCcHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECccccc-CcCHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence            999999999999888777765431   225699999999999864 122333332221  11   112489999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        397 IEDSMNFLVD  406 (452)
Q Consensus       397 v~~lf~~i~~  406 (452)
                      |+++|++|++
T Consensus       150 v~~~~~~i~~  159 (160)
T cd04156         150 LAEAFRKLAS  159 (160)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.88  E-value=2e-22  Score=182.17  Aligned_cols=153  Identities=20%  Similarity=0.262  Sum_probs=119.7

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      +|+++|.++||||||++++.++ +...+.+|++...  ..+..     ..+.+++||++|++++..++..+++++|++|+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~   72 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL-----DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVF   72 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE-----CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEE
Confidence            4889999999999999999876 6677788887543  23333     45789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH------HHHHHHHcCC-CEEEEecCCCC
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE------IEAVCHQYNF-MSWIEVSSKEH  394 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~------~~~~~~~~~~-~~~~evSAktg  394 (452)
                      |||+++..+|+.+..|+..+....   ...++|++||+||+|+.+. ...++      +..++++.+. ..+++|||++|
T Consensus        73 V~D~s~~~s~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161          73 VVDSSDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNA-LLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             EEECCchhHHHHHHHHHHHHHcCc---cccCCcEEEEEeCCCCcCC-CCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence            999999999999998888876541   2357999999999999751 11221      1223322332 23677999998


Q ss_pred             ------ccHHHHHHHHHH
Q psy14768        395 ------LMIEDSMNFLVD  406 (452)
Q Consensus       395 ------~nv~~lf~~i~~  406 (452)
                            .|+++.|+||..
T Consensus       149 ~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         149 LGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCccccCHHHHHHHHhc
Confidence                  899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PLN00023 GTP-binding protein; Provisional

Probab=99.88  E-value=7e-22  Score=193.25  Aligned_cols=148  Identities=21%  Similarity=0.442  Sum_probs=123.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeec----------CCeeEEEEEEecCCcchhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY----------GGRPVKLQIWDIAGQDRYICM  308 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~----------~~~~~~l~l~DtaG~e~~~~~  308 (452)
                      ..+||+++|..+||||||+++|+++.+...+.+|+|.++....+.+...          +++.+.++||||+|+++|..+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            4589999999999999999999999999889999999887776665100          135688999999999999999


Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhh--------cCCCCCcEEEEEECCCCCC-C---c---ccHHH
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL--------DNGAMLPCLLLASKCDLPD-R---Q---VEINE  373 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~--------~~~~~~piilV~NK~Dl~~-~---~---~~~e~  373 (452)
                      +..+|+++|++|+|||+++..+|+++..|+..+......        ....++|++||+||+||.+ +   .   +..++
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~  179 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA  179 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence            999999999999999999999999999999999875210        0013589999999999965 2   2   36889


Q ss_pred             HHHHHHHcCCCEE
Q psy14768        374 IEAVCHQYNFMSW  386 (452)
Q Consensus       374 ~~~~~~~~~~~~~  386 (452)
                      +++|+++.++.+.
T Consensus       180 a~~~A~~~g~l~~  192 (334)
T PLN00023        180 ARQWVEKQGLLPS  192 (334)
T ss_pred             HHHHHHHcCCCcc
Confidence            9999999887543

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.87  E-value=6.7e-22  Score=179.91  Aligned_cols=154  Identities=19%  Similarity=0.338  Sum_probs=119.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||++++..+.+.. +.++++.++..  +.+     ..+.+.+|||+|++.+...+..+++.+|++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v   86 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY-----KNIRFLMWDIGGQESLRSSWNTYYTNTDAV   86 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE-----CCeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            5799999999999999999999877764 56777765532  222     357899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCCC
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKEH  394 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAktg  394 (452)
                      |+|||++++.++.....++..+.+..   ...++|++||+||+|+.+ ....+++.+..     ...++ +++++||++|
T Consensus        87 i~V~D~s~~~~~~~~~~~l~~~~~~~---~~~~~p~viv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g  161 (174)
T cd04153          87 ILVIDSTDRERLPLTKEELYKMLAHE---DLRKAVLLVLANKQDLKG-AMTPAEISESLGLTSIRDHTW-HIQGCCALTG  161 (174)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECCCCCC-CCCHHHHHHHhCcccccCCce-EEEecccCCC
Confidence            99999999999988877666654431   235699999999999875 22333332222     12222 4899999999


Q ss_pred             ccHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVD  406 (452)
Q Consensus       395 ~nv~~lf~~i~~  406 (452)
                      .||+++|++|.+
T Consensus       162 ~gi~e~~~~l~~  173 (174)
T cd04153         162 EGLPEGLDWIAS  173 (174)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.87  E-value=1.3e-21  Score=174.80  Aligned_cols=153  Identities=25%  Similarity=0.342  Sum_probs=114.8

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|++++|||||++++..+.+. .+.+|++.++..  +.     ...+.+++|||+|++.|..++..+++.+|++|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~--~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   72 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET--VT-----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIY   72 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE--EE-----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999877665 456777765532  22     245789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC----CCEEEEecCCCCccH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN----FMSWIEVSSKEHLMI  397 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~----~~~~~evSAktg~nv  397 (452)
                      |||++++.++.....++..+.+..   ...++|++||+||+|+.+.. ..+++.+......    ..+++++||++|.|+
T Consensus        73 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151          73 VVDSTDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL-SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence            999999988887766555443221   23469999999999986421 2223222211111    124899999999999


Q ss_pred             HHHHHHHHH
Q psy14768        398 EDSMNFLVD  406 (452)
Q Consensus       398 ~~lf~~i~~  406 (452)
                      +++|+++++
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.87  E-value=1.4e-21  Score=175.81  Aligned_cols=154  Identities=25%  Similarity=0.398  Sum_probs=118.5

Q ss_pred             cEEEeeecccCCcceeeecccccc------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKF------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN  315 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~  315 (452)
                      +|+++|++|+|||||++++.+...      ...+.+|++.++.  .+.+     ..+.+.+|||+|++.+..++..+++.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~   73 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV-----GNARLKFWDLGGQESLRSLWDKYYAE   73 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE-----CCEEEEEEECCCChhhHHHHHHHhCC
Confidence            589999999999999999875322      2344556665553  3333     35789999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc------CCCEEEEe
Q psy14768        316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY------NFMSWIEV  389 (452)
Q Consensus       316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~------~~~~~~ev  389 (452)
                      +|++++|||+++..++.....|+..+.+..   ...++|++||+||+|+.+ ....+++..+....      ...+++++
T Consensus        74 ~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          74 CHAIIYVIDSTDRERFEESKSALEKVLRNE---ALEGVPLLILANKQDLPD-ALSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             CCEEEEEEECchHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEEcccccc-CCCHHHHHHHhccccccccCCceEEEEe
Confidence            999999999999988988888777765531   235699999999999865 33445555554432      12358999


Q ss_pred             cCCCCccHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~  406 (452)
                      ||++|.|++++|++|..
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.86  E-value=3.8e-21  Score=171.44  Aligned_cols=153  Identities=24%  Similarity=0.373  Sum_probs=120.1

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|.+|+|||||++++++.. ...+.++++.....  +.+     ..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   72 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEY-----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIF   72 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEE-----CCEEEEEEECCCChhhHHHHHHHhccCCEEEE
Confidence            68999999999999999999876 34556677655433  323     35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCCCccH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKEHLMI  397 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAktg~nv  397 (452)
                      |||++++.++.....|+..+....   ...+.|+++|+||+|+... ...++..+.....    ...+++++||++|.|+
T Consensus        73 v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878          73 VVDSSDRERIEEAKEELHKLLNEE---ELKGVPLLIFANKQDLPGA-LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEeeccCCccc-cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence            999999999999988777765542   2457999999999998752 2333333333321    2345899999999999


Q ss_pred             HHHHHHHHH
Q psy14768        398 EDSMNFLVD  406 (452)
Q Consensus       398 ~~lf~~i~~  406 (452)
                      +++|++|+.
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.86  E-value=2.5e-21  Score=178.25  Aligned_cols=157  Identities=20%  Similarity=0.304  Sum_probs=124.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ...+|+++|++|+|||||++++.++.+. .+.+|.+...  ..+.+   +  .+.+.+||++|++.+..++..+++.+|+
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~---~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~   89 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTI---G--NIKFKTFDLGGHEQARRLWKDYFPEVDG   89 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEE---C--CEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            4689999999999999999999987663 4566666443  33334   3  4678999999999998888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC---------------C
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN---------------F  383 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~---------------~  383 (452)
                      +++|+|+++..+|+....|+..+....   ...+.|++||+||+|+.. .+..+++++++....               .
T Consensus        90 iilV~D~~~~~s~~~~~~~~~~i~~~~---~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879          90 IVFLVDAADPERFQESKEELDSLLSDE---ELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHcCc---cccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCcee
Confidence            999999999999988877777765431   235699999999999864 455666766664321               1


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHH
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      ..+++|||++|+|++++|+++++.
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHhh
Confidence            247999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01890 LepA LepA subfamily

Probab=99.86  E-value=5e-21  Score=174.22  Aligned_cols=158  Identities=18%  Similarity=0.256  Sum_probs=115.5

Q ss_pred             cEEEeeecccCCcceeeeccccc-------cccccCCc------ceeeeEEEEE--EeeecCCeeEEEEEEecCCcchhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK-------FLDNYKNT------VGVDFSTKLL--SHKKYGGRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t------~~~d~~~~~i--~~~~~~~~~~~l~l~DtaG~e~~~  306 (452)
                      +|+++|.+++|||||+++|++..       +...+.++      .+.++....+  .+...++..+.+.||||||+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998632       11122222      1223332222  221114567889999999999999


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC--
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM--  384 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~--  384 (452)
                      .++..+++.+|++|+|||++++.++++...|.....        .++|+++|+||+|+.+ ....+...++.+.++..  
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~  152 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--------NNLEIIPVINKIDLPS-ADPERVKQQIEDVLGLDPS  152 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--------cCCCEEEEEECCCCCc-CCHHHHHHHHHHHhCCCcc
Confidence            998999999999999999999888888777754433        2489999999999864 11223345666666553  


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      .++++||++|.|++++|+++.+.+
T Consensus       153 ~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         153 EAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             cEEEeeccCCCCHHHHHHHHHhhC
Confidence            389999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.85  E-value=9.1e-21  Score=174.20  Aligned_cols=157  Identities=17%  Similarity=0.234  Sum_probs=120.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||++++.++.+. .+.+|.+...  ..+.+     ..+.+.+|||+|++.+..++..+++++|+
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~-----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~   87 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI-----GNIKFTTFDLGGHQQARRLWKDYFPEVNG   87 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE-----CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            3589999999999999999999987654 3445555433  22333     34788999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----------cCCCEEE
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----------YNFMSWI  387 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----------~~~~~~~  387 (452)
                      +|+|+|++++.++.....++..+....   ...++|++||+||+|+.. .+..+++.+...-           .....++
T Consensus        88 ii~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~-~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~  163 (184)
T smart00178       88 IVYLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPY-AASEDELRYALGLTNTTGSKGKVGVRPLEVF  163 (184)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccC-CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence            999999999999988877776654321   235689999999999863 3445555544321           1233479


Q ss_pred             EecCCCCccHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~  407 (452)
                      +|||++|.|++++|+++...
T Consensus       164 ~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      164 MCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EeecccCCChHHHHHHHHhh
Confidence            99999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.85  E-value=1.5e-20  Score=166.14  Aligned_cols=154  Identities=27%  Similarity=0.437  Sum_probs=120.2

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      .|+++|++|+|||||++++.+..+...+.++++.++..  +..   .  .+.+.+|||+|++.+..++..++..+|++++
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~---~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~   73 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK---G--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVY   73 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE---C--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence            47899999999999999999999998888998877653  222   2  3789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH--H--cCCCEEEEecCCCCccH
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH--Q--YNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~--~--~~~~~~~evSAktg~nv  397 (452)
                      |+|+++..++.....|+..+....   ...++|+++|+||+|+.+.. ..++......  .  ....+++++||++|.|+
T Consensus        74 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  149 (159)
T cd04159          74 VVDAADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSITDREVSCYSISCKEKTNI  149 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCCc-CHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence            999999988888877766665431   23568999999999987521 1222211111  1  11134799999999999


Q ss_pred             HHHHHHHHH
Q psy14768        398 EDSMNFLVD  406 (452)
Q Consensus       398 ~~lf~~i~~  406 (452)
                      .++|+++.+
T Consensus       150 ~~l~~~l~~  158 (159)
T cd04159         150 DIVLDWLIK  158 (159)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.85  E-value=3.4e-21  Score=168.89  Aligned_cols=135  Identities=21%  Similarity=0.259  Sum_probs=103.3

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc-----chhhhhhhhhhcCC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-----DRYICMSRVYYQNS  316 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-----e~~~~~~~~~i~~a  316 (452)
                      ||+++|++|||||||+|+|.++.+  .+.+|.+.+       +   ..     .+|||+|+     +.|..+.. .++++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~-------~---~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~a   63 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVE-------Y---ND-----GAIDTPGEYVENRRLYSALIV-TAADA   63 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEE-------E---cC-----eeecCchhhhhhHHHHHHHHH-HhhcC
Confidence            799999999999999999998764  233343322       2   11     58999997     23444433 58999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      |++|+|||++++.++... .|...   .       ..|+++|+||+|+.++....++++++++..+..+++++||++|.|
T Consensus        64 d~vilv~d~~~~~s~~~~-~~~~~---~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  132 (142)
T TIGR02528        64 DVIALVQSATDPESRFPP-GFASI---F-------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQG  132 (142)
T ss_pred             CEEEEEecCCCCCcCCCh-hHHHh---c-------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            999999999999988663 34321   1       149999999999976455667778888888775699999999999


Q ss_pred             HHHHHHHHH
Q psy14768        397 IEDSMNFLV  405 (452)
Q Consensus       397 v~~lf~~i~  405 (452)
                      ++++|++++
T Consensus       133 i~~l~~~l~  141 (142)
T TIGR02528       133 LEALVDYLN  141 (142)
T ss_pred             HHHHHHHHh
Confidence            999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.84  E-value=2.5e-20  Score=166.49  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=106.5

Q ss_pred             cEEEeeecccCCcceeeecccc---ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .|+++|++|||||||+++|.+.   .+...+.++++.+.....+.+   .. ...+.+|||||+++|......++..+|+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~   77 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL---PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL   77 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe---cC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence            5899999999999999999863   333344455666555544444   32 4578999999999988777778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHHHHHHHHc--CCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEIEAVCHQY--NFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~~~~~~~~--~~~~~~evSAkt  393 (452)
                      +|+|||+++....+... ++..+...      ..+|+++|+||+|+.+.   ....++..++....  ...+++++||++
T Consensus        78 ii~V~d~~~~~~~~~~~-~~~~~~~~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (164)
T cd04171          78 VLLVVAADEGIMPQTRE-HLEILELL------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT  150 (164)
T ss_pred             EEEEEECCCCccHhHHH-HHHHHHHh------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence            99999998732222211 11122221      12599999999999752   12233444444442  223599999999


Q ss_pred             CccHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVD  406 (452)
Q Consensus       394 g~nv~~lf~~i~~  406 (452)
                      +.|++++|+.+..
T Consensus       151 ~~~v~~l~~~l~~  163 (164)
T cd04171         151 GEGIEELKEYLDE  163 (164)
T ss_pred             CcCHHHHHHHHhh
Confidence            9999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01898 Obg Obg subfamily

Probab=99.84  E-value=1.8e-20  Score=168.91  Aligned_cols=160  Identities=11%  Similarity=0.079  Sum_probs=113.6

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc----hhhhhhhhh---hc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD----RYICMSRVY---YQ  314 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e----~~~~~~~~~---i~  314 (452)
                      .|+++|++|+|||||+|++.+........+.++.+.....+..   ++ ...+.+|||||+.    .+..+...+   ++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~---~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV---DD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIE   77 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc---CC-CCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence            5899999999999999999976544333333333332222322   22 2478999999974    222233333   45


Q ss_pred             CCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768        315 NSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       315 ~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt  393 (452)
                      .+|++|+|+|++++ .+++.+..|...+....  .....+|+++|+||+|+.+.....+....+.......+++++||++
T Consensus        78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  155 (170)
T cd01898          78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYN--PELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALT  155 (170)
T ss_pred             hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhC--ccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCC
Confidence            69999999999999 79999999988887652  1124689999999999976333345555666654233489999999


Q ss_pred             CccHHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVDR  407 (452)
Q Consensus       394 g~nv~~lf~~i~~~  407 (452)
                      +.|++++|+++.+.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=5.6e-20  Score=183.61  Aligned_cols=166  Identities=12%  Similarity=0.043  Sum_probs=123.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhh---hhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMS---RVY  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~---~~~  312 (452)
                      -..|+++|.||||||||+|++.+.+......+.++.+...-.+.+   . ....+.+|||||+.+    ...+.   ...
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~---~-~~~~~~i~D~PGli~ga~~~~gLg~~flrh  233 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV---D-DYKSFVIADIPGLIEGASEGAGLGHRFLKH  233 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe---C-CCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence            368999999999999999999985544444455565555444443   2 334688999999732    11232   335


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      +++++++|+|||+++..++++++.|..++..+.  ....++|++||+||+|+.+ .....+..+.+....+.. ++++||
T Consensus       234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~--~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iSA  310 (335)
T PRK12299        234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS--PELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLISA  310 (335)
T ss_pred             hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh--hhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEEc
Confidence            678999999999998889999999999998762  1124689999999999976 333334455555556555 899999


Q ss_pred             CCCccHHHHHHHHHHHHHHhh
Q psy14768        392 KEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~~~  412 (452)
                      +++.||+++|+++.+.+.+.+
T Consensus       311 ktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        311 VTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999998876543

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.83  E-value=4.5e-20  Score=166.06  Aligned_cols=154  Identities=15%  Similarity=0.148  Sum_probs=106.4

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----------hhhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----------ICMSRV  311 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----------~~~~~~  311 (452)
                      +|+++|.+|+|||||+|++.+..+.....+.++.+.....+     ....+.+.||||+|+...          ..+ ..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~   75 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF-----DYKYLRWQVIDTPGLLDRPLEERNTIEMQAI-TA   75 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE-----ccCceEEEEEECCCcCCccccCCchHHHHHH-HH
Confidence            68999999999999999999876644333333333322222     224578999999998421          111 11


Q ss_pred             hhcCCCEEEEEEeCCChhhH--HHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        312 YYQNSDGCIIMFDLTNRKSF--ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~--~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ....+|++|+|||+++..++  +....|+..+...     ..+.|+++|+||+|+.+... ..+..++...... +++++
T Consensus        76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~  148 (168)
T cd01897          76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-----FKNKPVIVVLNKIDLLTFED-LSEIEEEEELEGE-EVLKI  148 (168)
T ss_pred             HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh-----cCcCCeEEEEEccccCchhh-HHHHHHhhhhccC-ceEEE
Confidence            12236899999999987654  5566677777654     24699999999999975211 1124444444444 48999


Q ss_pred             cCCCCccHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i  408 (452)
                      ||++|.|++++|+++.+.+
T Consensus       149 Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         149 STLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EecccCCHHHHHHHHHHHh
Confidence            9999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.83  E-value=1.3e-19  Score=159.25  Aligned_cols=158  Identities=23%  Similarity=0.442  Sum_probs=130.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|+|||||++++....+...+.++++.++....+..   ++..+.+.+||++|+..+..++..++++++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   77 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE---DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESS   77 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE---CCEEEEEEEEECCCcccchHHHHHHHhhhhEE
Confidence            378999999999999999999998788888889998887776666   66668899999999999999988889999999


Q ss_pred             EEEEeCCCh-hhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        320 IIMFDLTNR-KSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       320 IlV~D~t~~-~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +.++|.... .++.+.. .|...+....    ..+.|+++|+||+|+.... ..+.........+..+++++||+++.|+
T Consensus        78 i~~~d~~~~v~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv  152 (161)
T TIGR00231        78 LRVFDIVILVLDVEEILEKQTKEIIHHA----ESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNI  152 (161)
T ss_pred             EEEEEEeeeehhhhhHhHHHHHHHHHhc----ccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence            999999888 7777665 6777666652    2278999999999997532 3344455555566666999999999999


Q ss_pred             HHHHHHHH
Q psy14768        398 EDSMNFLV  405 (452)
Q Consensus       398 ~~lf~~i~  405 (452)
                      .++|+++-
T Consensus       153 ~~~~~~l~  160 (161)
T TIGR00231       153 DSAFKIVE  160 (161)
T ss_pred             HHHHHHhh
Confidence            99999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.82  E-value=1.2e-19  Score=164.12  Aligned_cols=153  Identities=25%  Similarity=0.347  Sum_probs=116.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|++|+|||||++++.+..+. .+.++.+.++.  .+..   +  ...+.+||++|++.+...+..+++.+|+
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~---~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQS---D--GFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE---C--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            3689999999999999999999986543 34566664443  3333   3  4678999999999998888889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-------EEEEecC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-------SWIEVSS  391 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-------~~~evSA  391 (452)
                      +++|||+++..++.....|+..+....   ...++|+++++||+|+.+. ..   .+++.+.++..       .++++||
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~-~~---~~~i~~~l~~~~~~~~~~~~~~~Sa  157 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEE---KLAGVPVLVFANKQDLATA-AP---AEEIAEALNLHDLRDRTWHIQACSA  157 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECCCCccC-CC---HHHHHHHcCCcccCCCeEEEEEeEC
Confidence            999999999988988877666554331   2346999999999998641 11   22333444332       3689999


Q ss_pred             CCCccHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVD  406 (452)
Q Consensus       392 ktg~nv~~lf~~i~~  406 (452)
                      ++|.|++++|++|++
T Consensus       158 ~~~~gi~~~~~~l~~  172 (173)
T cd04155         158 KTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.82  E-value=2.9e-19  Score=168.16  Aligned_cols=167  Identities=28%  Similarity=0.435  Sum_probs=137.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|+|||||+++|.++.+...+.++++..+.......   ....+.+.+|||+||++|+.++..++..+++++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP---YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe---CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            89999999999999999999999999999999998888777766   555889999999999999999999999999999


Q ss_pred             EEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-------------cccHHHHHHHHHHc---CC
Q psy14768        321 IMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-------------QVEINEIEAVCHQY---NF  383 (452)
Q Consensus       321 lV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-------------~~~~e~~~~~~~~~---~~  383 (452)
                      +|||.++ ..+++....|...+...    .....|+++|+||+|+...             ....+.........   ..
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELREL----APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP  158 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHh----CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc
Confidence            9999999 55666668899998876    3357999999999999762             12222222222222   33


Q ss_pred             CEEEEecCC--CCccHHHHHHHHHHHHHHhhhhh
Q psy14768        384 MSWIEVSSK--EHLMIEDSMNFLVDRIICSKRME  415 (452)
Q Consensus       384 ~~~~evSAk--tg~nv~~lf~~i~~~i~~~~~~~  415 (452)
                      . ++++||+  ++.+|.++|..++..+.+.....
T Consensus       159 ~-~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         159 A-LLETSAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             c-eeEeecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            3 8999999  99999999999999998665443

>cd01878 HflX HflX subfamily

Probab=99.81  E-value=1.6e-19  Score=168.30  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=112.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---------hhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR---------YICMS  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~---------~~~~~  309 (452)
                      ..++|+++|++|||||||+|++++..+.....+..+.+.....+.+   .+. ..+.+|||+|+..         |... 
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-  114 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL---PDG-REVLLTDTVGFIRDLPHQLVEAFRST-  114 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe---cCC-ceEEEeCCCccccCCCHHHHHHHHHH-
Confidence            3479999999999999999999987654443344444444444443   332 3788999999732         2221 


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ...+..+|++++|+|++++.++.+...|...+...    ...++|+++|+||+|+.+...    ...+..... .+++++
T Consensus       115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~----~~~~~~viiV~NK~Dl~~~~~----~~~~~~~~~-~~~~~~  185 (204)
T cd01878         115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL----GAEDIPMILVLNKIDLLDDEE----LEERLEAGR-PDAVFI  185 (204)
T ss_pred             HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc----CcCCCCEEEEEEccccCChHH----HHHHhhcCC-CceEEE
Confidence            12367899999999999999998888787777665    335689999999999975211    113333333 348999


Q ss_pred             cCCCCccHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~  407 (452)
                      ||+++.|++++|+++.+.
T Consensus       186 Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         186 SAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EcCCCCCHHHHHHHHHhh
Confidence            999999999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.81  E-value=3.8e-19  Score=162.22  Aligned_cols=159  Identities=25%  Similarity=0.401  Sum_probs=124.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|..++|||||++++..+.+. ...||.|.+...  +.+     ..+.+.+||.+|++.++.+|..++.++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~-----~~~~~~~~d~gG~~~~~~~w~~y~~~~~   83 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY-----KGYSLTIWDLGGQESFRPLWKSYFQNAD   83 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE-----TTEEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eee-----CcEEEEEEeccccccccccceeeccccc
Confidence            45689999999999999999999876544 467888866543  333     4577899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH--cC---CCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ--YN---FMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~--~~---~~~~~evSAk  392 (452)
                      ++|+|+|.++...++.....+..+....   ...++|++|++||.|+.+ ....+++.....-  +.   ...++.|||.
T Consensus        84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~---~~~~~piLIl~NK~D~~~-~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~  159 (175)
T PF00025_consen   84 GIIFVVDSSDPERLQEAKEELKELLNDP---ELKDIPILILANKQDLPD-AMSEEEIKEYLGLEKLKNKRPWSVFSCSAK  159 (175)
T ss_dssp             EEEEEEETTGGGGHHHHHHHHHHHHTSG---GGTTSEEEEEEESTTSTT-SSTHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred             eeEEEEecccceeecccccchhhhcchh---hcccceEEEEeccccccC-cchhhHHHhhhhhhhcccCCceEEEeeecc
Confidence            9999999999988888776665554431   345799999999999875 3445555544432  21   1235889999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRI  408 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i  408 (452)
                      +|+|+.+.|+||.+++
T Consensus       160 ~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  160 TGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcC
Confidence            9999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.81  E-value=3.8e-19  Score=159.73  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=111.7

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      .|+++|.+|+|||||+++|....+.....++++.+.....+..   + .....+.+|||+|++.|..++..++..+|+++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il   78 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPA---EVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI   78 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEec---ccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE
Confidence            4899999999999999999988777665566665554444443   2 23578899999999999988888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc--ccHHHHHHHHH----HcC-CCEEEEecCCC
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ--VEINEIEAVCH----QYN-FMSWIEVSSKE  393 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~e~~~~~~~----~~~-~~~~~evSAkt  393 (452)
                      +|+|+++....+....+ ..+..       .++|+++|+||+|+.+..  ...+....+..    ..+ ..+++++||++
T Consensus        79 ~v~d~~~~~~~~~~~~~-~~~~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (168)
T cd01887          79 LVVAADDGVMPQTIEAI-KLAKA-------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKT  150 (168)
T ss_pred             EEEECCCCccHHHHHHH-HHHHH-------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeeccc
Confidence            99999986433333222 22222       348999999999986411  11111211111    111 13489999999


Q ss_pred             CccHHHHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVDRII  409 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~  409 (452)
                      |.|+.++|+++.+...
T Consensus       151 ~~gi~~l~~~l~~~~~  166 (168)
T cd01887         151 GEGIDDLLEAILLLAE  166 (168)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0073|consensus

Probab=99.80  E-value=7.3e-19  Score=152.29  Aligned_cols=159  Identities=25%  Similarity=0.406  Sum_probs=127.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .+++|.++|..|+|||+++++|.+.. .....||.|....+..  +     +.+++++||.+||...+..|..||+.+|+
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~--~-----~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE--Y-----KGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE--e-----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            37899999999999999999999766 5566788886665443  3     56889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHH------HHHHHHHHcCCCEEEEecCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN------EIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e------~~~~~~~~~~~~~~~evSAk  392 (452)
                      +|+|+|.++...+++....+..+...   ......|++|++||.|+.. ....+      +...+++...+. .+.|||.
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~e---erlaG~~~Lvlank~dl~~-~l~~~~i~~~~~L~~l~ks~~~~-l~~cs~~  161 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVE---ERLAGAPLLVLANKQDLPG-ALSLEEISKALDLEELAKSHHWR-LVKCSAV  161 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhh---hhhcCCceEEEEecCcCcc-ccCHHHHHHhhCHHHhccccCce-EEEEecc
Confidence            99999999999888876544444222   1345689999999999974 12222      344455556666 8999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~  410 (452)
                      +|+++.+-|+|++..+..
T Consensus       162 tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  162 TGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccHHHHHHHHHHHHHH
Confidence            999999999999998876

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.80  E-value=3.1e-19  Score=158.54  Aligned_cols=148  Identities=16%  Similarity=0.174  Sum_probs=111.8

Q ss_pred             EeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------hhhhhhc--CC
Q psy14768        245 ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------MSRVYYQ--NS  316 (452)
Q Consensus       245 ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~~~~i~--~a  316 (452)
                      ++|.+|+|||||++++.+..+.....++++.+.....+.+   ++  ..+.+|||||++.+..      ++..++.  .+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL---GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKP   75 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee---CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCC
Confidence            5899999999999999987666666677777776666666   44  5789999999987654      3455664  99


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      |++|+|+|+++.....   .|...+..       .++|+++|+||+|+.+..........+...++.. ++++||+++.|
T Consensus        76 d~vi~v~d~~~~~~~~---~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iSa~~~~~  144 (158)
T cd01879          76 DLIVNVVDATNLERNL---YLTLQLLE-------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTSARKGEG  144 (158)
T ss_pred             cEEEEEeeCCcchhHH---HHHHHHHH-------cCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEEccCCCC
Confidence            9999999998754322   33333332       2489999999999976222233455677777765 99999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRI  408 (452)
Q Consensus       397 v~~lf~~i~~~i  408 (452)
                      +.++|+++.+.+
T Consensus       145 ~~~l~~~l~~~~  156 (158)
T cd01879         145 IDELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.80  E-value=4.7e-19  Score=178.27  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=116.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc-c--------hhhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-D--------RYICMS  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-e--------~~~~~~  309 (452)
                      ..++|+++|.+|+|||||+|+|++..+.....+.++.|.....+.+   .+ ...+.||||+|. +        .|...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~---~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL---PD-GGEVLLTDTVGFIRDLPHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe---CC-CceEEEEecCcccccCCHHHHHHHHHHH
Confidence            3489999999999999999999997776666677777887777665   32 347889999997 2        233322


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                       ..+.+||++|+|||++++.+++++..|...+...    ...++|+++|+||+|+.+.    +....+..  ...+++++
T Consensus       264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~----~~v~~~~~--~~~~~i~i  332 (351)
T TIGR03156       264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDE----PRIERLEE--GYPEAVFV  332 (351)
T ss_pred             -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCCh----HhHHHHHh--CCCCEEEE
Confidence             2478999999999999999888887777766655    3346899999999999641    11222211  22348999


Q ss_pred             cCCCCccHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~  407 (452)
                      ||++|.|++++++++.+.
T Consensus       333 SAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       333 SAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EccCCCCHHHHHHHHHhh
Confidence            999999999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00436 era GTP-binding protein Era

Probab=99.79  E-value=5.4e-19  Score=172.28  Aligned_cols=155  Identities=14%  Similarity=0.079  Sum_probs=111.8

Q ss_pred             cEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-h----hh---hhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-I----CM---SRVY  312 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~----~~---~~~~  312 (452)
                      +|+++|+||||||||+|+|+++.+. .+..+.++.+........     ...++.||||||+... .    .+   ...+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-----~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-----GASQIIFIDTPGFHEKKHSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-----CCcEEEEEECcCCCCCcchHHHHHHHHHHHH
Confidence            5899999999999999999997643 445555555543322222     2356899999997532 1    11   2346


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ++.+|++++|+|+++..+++  ..+...+..       .++|+++|+||+|+.+.....+....+....++..++++||+
T Consensus        77 l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence            88999999999999887765  344444443       248999999999997533333455566666666568999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~  410 (452)
                      +|.|++++++++.+.+..
T Consensus       148 ~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCCCHHHHHHHHHHhCCC
Confidence            999999999999887644

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.79  E-value=1.5e-18  Score=173.17  Aligned_cols=162  Identities=12%  Similarity=0.067  Sum_probs=117.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----hhhhhh---h
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----ICMSRV---Y  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----~~~~~~---~  312 (452)
                      -..|+++|.||||||||++++.+.+......+.++.+...-.+.+   ++ ...+.||||||+.+.    ..+...   .
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~---~~-~~~~~i~D~PGli~~a~~~~gLg~~flrh  232 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV---DD-GRSFVIADIPGLIEGASEGAGLGHRFLKH  232 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe---CC-ceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence            368999999999999999999986544333344444444444443   32 367899999997431    123333   3


Q ss_pred             hcCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        313 YQNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ++++|++|+|||+++.   .+++++..|..++..+.  ....++|++||+||+|+.+.....+..+.+.+.++.. ++++
T Consensus       233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~--~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~i  309 (329)
T TIGR02729       233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS--PELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPI  309 (329)
T ss_pred             HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh--hhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEE
Confidence            5679999999999987   68888888888887651  1124689999999999976322334455566666655 9999


Q ss_pred             cCCCCccHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i  408 (452)
                      ||+++.||+++|+++.+.+
T Consensus       310 SAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       310 SALTGEGLDELLYALAELL  328 (329)
T ss_pred             EccCCcCHHHHHHHHHHHh
Confidence            9999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.79  E-value=4.8e-19  Score=164.06  Aligned_cols=147  Identities=18%  Similarity=0.226  Sum_probs=102.3

Q ss_pred             cEEEeeecccCCcceeeeccc--ccccccc------------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ--NKFLDNY------------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC  307 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~--~~~~~~~------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~  307 (452)
                      +|+++|.+++|||||+++|+.  ..+...+            ..+.+.++......+   +.+.+.+.+|||+|+++|..
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~---~~~~~~~~l~DtpG~~~~~~   80 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV---TYKDTKINIVDTPGHADFGG   80 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE---EECCEEEEEEECCCcHHHHH
Confidence            689999999999999999996  3443322            122333343333334   45678899999999999999


Q ss_pred             hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHHHc----
Q psy14768        308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCHQY----  381 (452)
Q Consensus       308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~~~----  381 (452)
                      ++..+++.+|++|+|||+++.. +.....++..+..       .++|++||+||+|+.+ + ....+++.++...+    
T Consensus        81 ~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  152 (194)
T cd01891          81 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE  152 (194)
T ss_pred             HHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999753 2222333333322       3589999999999965 2 12234445554332    


Q ss_pred             ---CCCEEEEecCCCCccHHHH
Q psy14768        382 ---NFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       382 ---~~~~~~evSAktg~nv~~l  400 (452)
                         ++ +++++||++|.|+.++
T Consensus       153 ~~~~~-~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         153 EQLDF-PVLYASAKNGWASLNL  173 (194)
T ss_pred             ccCcc-CEEEeehhcccccccc
Confidence               44 4899999999887443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0070|consensus

Probab=99.78  E-value=2.3e-18  Score=153.05  Aligned_cols=161  Identities=20%  Similarity=0.337  Sum_probs=127.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ..+++|+++|-.++||||+++++-..+++.. .||+|.+.....  +     +.+.|.+||.+||++++.+|..|+.+.+
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--y-----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~   86 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--Y-----KNISFTVWDVGGQEKLRPLWKHYFQNTQ   86 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--E-----cceEEEEEecCCCcccccchhhhccCCc
Confidence            3468999999999999999999998877766 899997765544  3     4688999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAk  392 (452)
                      ++|+|+|.+|..-+..++.-+..+..+   ......|+++++||.|+.. ..+..++.+...-     ..+. +..++|.
T Consensus        87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~-als~~ei~~~L~l~~l~~~~w~-iq~~~a~  161 (181)
T KOG0070|consen   87 GLIFVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPG-ALSAAEITNKLGLHSLRSRNWH-IQSTCAI  161 (181)
T ss_pred             EEEEEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccc-cCCHHHHHhHhhhhccCCCCcE-Eeecccc
Confidence            999999999998888877655555554   1346899999999999985 2223333332222     2222 5789999


Q ss_pred             CCccHHHHHHHHHHHHHHh
Q psy14768        393 EHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~~  411 (452)
                      +|+++.+.++++...+...
T Consensus       162 ~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  162 SGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccccHHHHHHHHHHHHhcc
Confidence            9999999999999887653

>PRK04213 GTP-binding protein; Provisional

Probab=99.78  E-value=4.9e-19  Score=164.65  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=107.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-----------cchhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG-----------QDRYIC  307 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG-----------~e~~~~  307 (452)
                      ..++|+++|.+|||||||+|++.+..+...+.++++.+..  .+.+   .    .+.+|||+|           +++++.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~---~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDW---G----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce--EEee---c----ceEEEeCCccccccccCHHHHHHHHH
Confidence            4589999999999999999999987776666666665432  2322   2    588999999           567777


Q ss_pred             hhhhhhc----CCCEEEEEEeCCChhhHHH----------HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH
Q psy14768        308 MSRVYYQ----NSDGCIIMFDLTNRKSFES----------VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE  373 (452)
Q Consensus       308 ~~~~~i~----~ad~vIlV~D~t~~~S~~~----------~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~  373 (452)
                      ++..++.    .++++++|+|.+....+.+          -..+...+.       ..++|++||+||+|+.+..  .+.
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~p~iiv~NK~Dl~~~~--~~~  149 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-------ELGIPPIVAVNKMDKIKNR--DEV  149 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-------HcCCCeEEEEECccccCcH--HHH
Confidence            6666654    4578888888764322100          011111121       1358999999999986522  345


Q ss_pred             HHHHHHHcCC--C------EEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        374 IEAVCHQYNF--M------SWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       374 ~~~~~~~~~~--~------~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ..++.+.++.  .      +++++||++| ||+++|++|.+.+...+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            5666666664  1      3799999999 99999999998765443

>cd01889 SelB_euk SelB subfamily

Probab=99.78  E-value=1.3e-18  Score=160.90  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=107.1

Q ss_pred             ccEEEeeecccCCcceeeecccc-------ccccccCCcceeeeEEEEEEeee---------cCCeeEEEEEEecCCcch
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQN-------KFLDNYKNTVGVDFSTKLLSHKK---------YGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~-------~~~~~~~~t~~~d~~~~~i~~~~---------~~~~~~~l~l~DtaG~e~  304 (452)
                      ++|+++|++|+|||||+++|+..       ....+..++++.+.....+.+..         ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999862       22222234455554444443310         023467899999999976


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHH-H
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCH-Q  380 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~-~  380 (452)
                      +..........+|++++|+|++++.+.+..+.+.. . ..      .++|+++|+||+|+..   .+...++..+... .
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~  152 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-G-EI------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT  152 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-H-HH------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence            54433445677899999999998766665544332 1 11      2479999999999974   1112233332221 1


Q ss_pred             -----cCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        381 -----YNFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       381 -----~~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                           ....+++++||++|.|++++++++..++.
T Consensus       153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                 12234899999999999999999988765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=4.5e-19  Score=157.27  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=107.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhh--
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVY--  312 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~--  312 (452)
                      ++|+++|.||||||||+|++++.+......|+++.+.....+.+   .+  ..+.|+|+||.-...      .+...+  
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~---~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL---GD--QQVELVDLPGIYSLSSKSEEERVARDYLL   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE---TT--EEEEEEE----SSSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe---cC--ceEEEEECCCcccCCCCCcHHHHHHHHHh
Confidence            57999999999999999999998777788899998888777776   44  567788999953221      222333  


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ..+.|++|+|+|+++.+  .++....+.++.        ++|+++|+||+|+..+.-...+.+.+.+.++++ .+.+||+
T Consensus        76 ~~~~D~ii~VvDa~~l~--r~l~l~~ql~e~--------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~sa~  144 (156)
T PF02421_consen   76 SEKPDLIIVVVDATNLE--RNLYLTLQLLEL--------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVSAR  144 (156)
T ss_dssp             HTSSSEEEEEEEGGGHH--HHHHHHHHHHHT--------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTT
T ss_pred             hcCCCEEEEECCCCCHH--HHHHHHHHHHHc--------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEEeC
Confidence            36899999999999753  333333333333        399999999999876222223467788888887 9999999


Q ss_pred             CCccHHHHHHHH
Q psy14768        393 EHLMIEDSMNFL  404 (452)
Q Consensus       393 tg~nv~~lf~~i  404 (452)
                      ++.|++++++.|
T Consensus       145 ~~~g~~~L~~~I  156 (156)
T PF02421_consen  145 TGEGIDELKDAI  156 (156)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHhhC
Confidence            999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.77  E-value=2.5e-18  Score=177.82  Aligned_cols=153  Identities=19%  Similarity=0.235  Sum_probs=118.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh--------
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM--------  308 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~--------  308 (452)
                      ...++|+++|.+|||||||+|+|++.. ......++++.++....+.+   ++  ..+.+|||||++.+...        
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~---~g--~~v~l~DTaG~~~~~~~ie~~gi~~  275 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL---NG--ILIKLLDTAGIREHADFVERLGIEK  275 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE---CC--EEEEEeeCCCcccchhHHHHHHHHH
Confidence            346899999999999999999999854 34555678888888777776   54  55789999998654422        


Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ...+++++|++|+|||++++.++++.  |+..+..       .++|+++|+||+|+.+.     +...+.+.++.. +++
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~-~~~  340 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN-----SLEFFVSSKVLN-SSN  340 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc-----chhhhhhhcCCc-eEE
Confidence            23578999999999999999888775  6555432       35899999999998642     223455566655 899


Q ss_pred             ecCCCCccHHHHHHHHHHHHHHh
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +||++ .||+++|+.+.+.+.+.
T Consensus       341 vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHHHH
Confidence            99998 69999999999888654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=3.2e-18  Score=179.45  Aligned_cols=154  Identities=15%  Similarity=0.116  Sum_probs=114.2

Q ss_pred             cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~  310 (452)
                      ..+|+|+|++|||||||+|++++... .....++++.+.....+.+   ++  ..+.+|||+|++.        +...+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~---~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~  112 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW---NG--RRFTVVDTGGWEPDAKGLQASVAEQAE  112 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE---CC--cEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence            36899999999999999999998653 4566677777776666655   44  4578999999763        333445


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      .+++.||++|+|||++++.++.+. .|...+..       .++|++||+||+|+....  .+..+.+  .+++...++||
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~~~-~i~~~l~~-------~~~piilV~NK~Dl~~~~--~~~~~~~--~~g~~~~~~iS  180 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATATDE-AVARVLRR-------SGKPVILAANKVDDERGE--ADAAALW--SLGLGEPHPVS  180 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCccc--hhhHHHH--hcCCCCeEEEE
Confidence            678999999999999998777653 34444433       359999999999986421  1222222  34443457999


Q ss_pred             CCCCccHHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~  410 (452)
                      |++|.|++++|++++..+.+
T Consensus       181 A~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        181 ALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             cCCCCCcHHHHHHHHhhccc
Confidence            99999999999999988754

>KOG4423|consensus

Probab=99.76  E-value=1.9e-20  Score=165.17  Aligned_cols=170  Identities=41%  Similarity=0.761  Sum_probs=153.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      -+|+.|+|.-++||++++.+++...|...|.+|+|.|+..+...+   +. ..+.++|||.+||++|..|..-||+.+++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~w---dd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQW---DDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhcc---ChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            478999999999999999999999999999999999998887777   44 44679999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      .++|||++...+|+....|...+............|+|+..||||...  .........++.++.++..++++|+|.+.|
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            999999999999999999999999888888888899999999999976  333357888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      +.|+-..+++.+.-..
T Consensus       182 i~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  182 IPEAQRELVEKILVND  197 (229)
T ss_pred             hhHHHHHHHHHHHhhc
Confidence            9999999998887554

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=4.3e-18  Score=155.59  Aligned_cols=154  Identities=14%  Similarity=0.155  Sum_probs=110.3

Q ss_pred             cEEEeeecccCCcceeeeccccccccccC----------------CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYK----------------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~----------------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      +|+++|.+|+|||||+|.+++........                .+++.+.....+.     .....+.+|||+|+..+
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~liDtpG~~~~   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-----WPDRRVNFIDTPGHEDF   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-----eCCEEEEEEeCCCcHHH
Confidence            48999999999999999998765543321                2223333222332     24568999999999998


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHHHHHHHHcC
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEIEAVCHQYN  382 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~~~~~~~~~  382 (452)
                      ...+..++..+|++++|+|++++.+.+....+ ..+..       .++|+++|+||+|+...   ....+++.+..+..+
T Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (189)
T cd00881          76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHL-RIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG  147 (189)
T ss_pred             HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHH-HHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence            88888899999999999999987766544332 22222       35999999999999751   112233444444322


Q ss_pred             -------------CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        383 -------------FMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       383 -------------~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                                   ..+++++||++|.|++++|.++.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                         35589999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.76  E-value=9.7e-18  Score=145.44  Aligned_cols=153  Identities=37%  Similarity=0.664  Sum_probs=117.0

Q ss_pred             EeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEE
Q psy14768        245 ITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMF  323 (452)
Q Consensus       245 ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~  323 (452)
                      ++|.+|+|||||++++.+... .....++. .+........   ......+.+||++|+..+...+..++..+|++++||
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   76 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV---DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVY   76 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE---CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999998766 44444444 6666666665   566789999999999988887788899999999999


Q ss_pred             eCCChhhHHHHHHHHHH-HHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH-HHHHHHHcCCCEEEEecCCCCccHHHHH
Q psy14768        324 DLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCLLLASKCDLPDRQVEINE-IEAVCHQYNFMSWIEVSSKEHLMIEDSM  401 (452)
Q Consensus       324 D~t~~~S~~~~~~~~~~-i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~-~~~~~~~~~~~~~~evSAktg~nv~~lf  401 (452)
                      |++++.++..+..|... +...    ...++|+++|+||.|+......... ...........+++++||+++.++++++
T Consensus        77 d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  152 (157)
T cd00882          77 DVTDRESFENVKEWLLLILINK----EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELF  152 (157)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhh----ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHH
Confidence            99999999998877322 2222    3567999999999998762222222 1233334444559999999999999999


Q ss_pred             HHHH
Q psy14768        402 NFLV  405 (452)
Q Consensus       402 ~~i~  405 (452)
                      +++.
T Consensus       153 ~~l~  156 (157)
T cd00882         153 EELA  156 (157)
T ss_pred             HHHh
Confidence            9875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.76  E-value=2.4e-18  Score=155.63  Aligned_cols=158  Identities=13%  Similarity=0.153  Sum_probs=105.9

Q ss_pred             EeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhh---hhhhcCCC
Q psy14768        245 ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMS---RVYYQNSD  317 (452)
Q Consensus       245 ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~---~~~i~~ad  317 (452)
                      ++|++|||||||+|++.+........+.++.+.....+.+   + ....+.+|||||+..    +..++   ...++.+|
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~---~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d   76 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEV---P-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD   76 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEc---C-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence            5899999999999999987653333333444433333333   2 145689999999732    22222   34578899


Q ss_pred             EEEEEEeCCCh------hhHHHHHHHHHHHHhhhhh---cCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEE
Q psy14768        318 GCIIMFDLTNR------KSFESVVQWKHDLDSKCIL---DNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       318 ~vIlV~D~t~~------~S~~~~~~~~~~i~~~~~~---~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~  387 (452)
                      ++++|+|+++.      .+++++..|...+......   ....++|+++|+||+|+.. ...............+ ..++
T Consensus        77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~  155 (176)
T cd01881          77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEG-AEVV  155 (176)
T ss_pred             EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCC-CCEE
Confidence            99999999988      5788888887777654100   0013699999999999975 2222211222222333 3489


Q ss_pred             EecCCCCccHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~  407 (452)
                      ++||+++.|++++++++...
T Consensus       156 ~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         156 PISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEehhhhcCHHHHHHHHHhh
Confidence            99999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK11058 GTPase HflX; Provisional

Probab=99.76  E-value=6.8e-18  Score=173.74  Aligned_cols=158  Identities=14%  Similarity=0.113  Sum_probs=116.0

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh--hhhhh------hh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY--ICMSR------VY  312 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~--~~~~~------~~  312 (452)
                      .+|+++|.+|+|||||+|++++..+.....++++.|.....+.+   .+. ..+.+|||+|..+.  ..++.      ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l---~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~  273 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV---ADV-GETVLADTVGFIRHLPHDLVAAFKATLQE  273 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe---CCC-CeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            68999999999999999999987665666677777777666665   332 25779999997331  22222      34


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ++.||++|+|+|++++.+++++..|...+...    ...++|+++|+||+|+.+...  .....  ...+...++++||+
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~~--~~~~~--~~~~~~~~v~ISAk  345 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDFE--PRIDR--DEENKPIRVWLSAQ  345 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCchh--HHHHH--HhcCCCceEEEeCC
Confidence            68999999999999998888887666666554    234689999999999964211  11111  12344435889999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~  410 (452)
                      +|.|++++++++...+..
T Consensus       346 tG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        346 TGAGIPLLFQALTERLSG  363 (426)
T ss_pred             CCCCHHHHHHHHHHHhhh
Confidence            999999999999988753

>KOG0075|consensus

Probab=99.76  E-value=4.9e-18  Score=144.35  Aligned_cols=156  Identities=24%  Similarity=0.412  Sum_probs=124.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++.+.++|..++|||||+|....+.+..+..||.|.+....       ....+.+.+||.+||.+|+++|+.|++.++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~-------tkgnvtiklwD~gGq~rfrsmWerycR~v~ai   92 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV-------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAI   92 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe-------ccCceEEEEEecCCCccHHHHHHHHhhcCcEE
Confidence            57788999999999999999999899999999999655433       44668899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCE-------EEEecCC
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMS-------WIEVSSK  392 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~-------~~evSAk  392 (452)
                      ++|+|+.++......+.-++.+...   +...++|+++.|||.|+.+ ..   .-.++..++|...       +|.+||+
T Consensus        93 vY~VDaad~~k~~~sr~EL~~LL~k---~~l~gip~LVLGnK~d~~~-AL---~~~~li~rmgL~sitdREvcC~siSck  165 (186)
T KOG0075|consen   93 VYVVDAADPDKLEASRSELHDLLDK---PSLTGIPLLVLGNKIDLPG-AL---SKIALIERMGLSSITDREVCCFSISCK  165 (186)
T ss_pred             EEEeecCCcccchhhHHHHHHHhcc---hhhcCCcEEEecccccCcc-cc---cHHHHHHHhCccccccceEEEEEEEEc
Confidence            9999999987776665433333222   2567899999999999875 11   1234445554422       5999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRII  409 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~  409 (452)
                      +..|++.+.+|+++.-.
T Consensus       166 e~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSK  182 (186)
T ss_pred             CCccHHHHHHHHHHHhh
Confidence            99999999999987643

>cd01894 EngA1 EngA1 subfamily

Probab=99.76  E-value=3.8e-18  Score=151.01  Aligned_cols=147  Identities=15%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             EEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhhhhhc
Q psy14768        244 LITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSRVYYQ  314 (452)
Q Consensus       244 ~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~~~i~  314 (452)
                      +++|.+|+|||||+|++++... .....+.++.+........     ....+.+|||+|+..+..        ....+++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-----GGREFILIDTGGIEPDDEGISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-----CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence            4799999999999999998542 2233345555555444444     336789999999877543        2345688


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        315 NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       315 ~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      .+|++++|+|+.+..+..+.. +...+..       .+.|+++|+||+|+.+...    .......++...++++||+++
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-------~~~piiiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~Sa~~~  143 (157)
T cd01894          76 EADVILFVVDGREGLTPADEE-IAKYLRK-------SKKPVILVVNKVDNIKEED----EAAEFYSLGFGEPIPISAEHG  143 (157)
T ss_pred             hCCEEEEEEeccccCCccHHH-HHHHHHh-------cCCCEEEEEECcccCChHH----HHHHHHhcCCCCeEEEecccC
Confidence            999999999998876655432 2222322       2389999999999975211    123344566645899999999


Q ss_pred             ccHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDR  407 (452)
Q Consensus       395 ~nv~~lf~~i~~~  407 (452)
                      .|++++|+++++.
T Consensus       144 ~gv~~l~~~l~~~  156 (157)
T cd01894         144 RGIGDLLDAILEL  156 (157)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.76  E-value=2.9e-18  Score=153.79  Aligned_cols=141  Identities=18%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-----hhhhhhhhhhcCC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-----RYICMSRVYYQNS  316 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-----~~~~~~~~~i~~a  316 (452)
                      +|+++|++|+|||||+|++.+.....  ..+.       .+.+   ...    .+|||||+.     .+..+ ...++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~---~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~a   65 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEF---NDK----GDIDTPGEYFSHPRWYHAL-ITTLQDV   65 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEE---CCC----CcccCCccccCCHHHHHHH-HHHHhcC
Confidence            69999999999999999987643211  1111       1222   222    269999972     22332 2347899


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-CEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-~~~~evSAktg~  395 (452)
                      |++|+|+|+++..++..  .|+..+.        .++|+++++||+|+.+  ...+.+.+++.++++ .+++++||++|+
T Consensus        66 d~il~v~d~~~~~s~~~--~~~~~~~--------~~~~ii~v~nK~Dl~~--~~~~~~~~~~~~~~~~~p~~~~Sa~~g~  133 (158)
T PRK15467         66 DMLIYVHGANDPESRLP--AGLLDIG--------VSKRQIAVISKTDMPD--ADVAATRKLLLETGFEEPIFELNSHDPQ  133 (158)
T ss_pred             CEEEEEEeCCCcccccC--HHHHhcc--------CCCCeEEEEEccccCc--ccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence            99999999998877633  3433322        2479999999999864  345667788888886 369999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy14768        396 MIEDSMNFLVDRIICS  411 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~  411 (452)
                      |++++|+.+.+.+.+.
T Consensus       134 gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        134 SVQQLVDYLASLTKQE  149 (158)
T ss_pred             CHHHHHHHHHHhchhh
Confidence            9999999998776543

>PRK15494 era GTPase Era; Provisional

Probab=99.76  E-value=6.9e-18  Score=169.42  Aligned_cols=157  Identities=16%  Similarity=0.228  Sum_probs=111.3

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hhhhh-------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YICMS-------  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~~~~-------  309 (452)
                      ...+|+++|++|||||||+|+|+++.+. .+..+.++.+.....+..   +  ..++.||||||+.. +..+.       
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~---~--~~qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL---K--DTQVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe---C--CeEEEEEECCCcCCCcccHHHHHHHHH
Confidence            3579999999999999999999987653 233445556665555544   3  35689999999843 32221       


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC-CCEEE
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN-FMSWI  387 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~-~~~~~  387 (452)
                      ..++..+|++|+|+|.++  +|.... .|+..+...       +.|.+||+||+|+.+.  ...++.+++.... +..++
T Consensus       126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~  194 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLF  194 (339)
T ss_pred             HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEE
Confidence            134789999999999876  344443 344444432       3677899999998642  2445556655543 45689


Q ss_pred             EecCCCCccHHHHHHHHHHHHHHh
Q psy14768        388 EVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ++||++|.|++++|+++...+...
T Consensus       195 ~iSAktg~gv~eL~~~L~~~l~~~  218 (339)
T PRK15494        195 PISALSGKNIDGLLEYITSKAKIS  218 (339)
T ss_pred             EEeccCccCHHHHHHHHHHhCCCC
Confidence            999999999999999998876544

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.75  E-value=8.6e-18  Score=179.75  Aligned_cols=159  Identities=16%  Similarity=0.218  Sum_probs=118.0

Q ss_pred             cEEEeeecccCCcceeeeccccc-------cccccCCc------ceeeeEEE--EEEeeecCCeeEEEEEEecCCcchhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK-------FLDNYKNT------VGVDFSTK--LLSHKKYGGRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t------~~~d~~~~--~i~~~~~~~~~~~l~l~DtaG~e~~~  306 (452)
                      +++++|..++|||||+++|+...       +...+..+      .|.++...  .+.+...++..+.+.||||||++.|.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            68999999999999999998632       12222221      13333333  23331114566899999999999999


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC--
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM--  384 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~--  384 (452)
                      ..+..+++.+|++|+|||++++.+++....|...+..        ++|+++|+||+|+.+. ...+...++.+.++..  
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--------~ipiIiViNKiDl~~~-~~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--------DLEIIPVINKIDLPSA-DPERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--------CCCEEEEEECcCCCcc-CHHHHHHHHHHHhCCCcc
Confidence            9899999999999999999999888888777665543        3899999999998641 1223345566656653  


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      .++++||++|.||+++|+++.+.+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCC
Confidence            4799999999999999999987764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01895 EngA2 EngA2 subfamily

Probab=99.75  E-value=1.7e-17  Score=148.97  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=107.3

Q ss_pred             cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----------hhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----------ICM  308 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----------~~~  308 (452)
                      .++|+++|.+|+|||||+|++++... .....++++.+.....+..   ++  ..+.+|||+|....          ..+
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~   76 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY---DG--KKYTLIDTAGIRRKGKVEEGIEKYSVL   76 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE---CC--eeEEEEECCCCccccchhccHHHHHHH
Confidence            47899999999999999999998653 3344455555555455544   43  45789999996432          211


Q ss_pred             h-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-cccHHH-HHHHHHHcC---
Q psy14768        309 S-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-QVEINE-IEAVCHQYN---  382 (452)
Q Consensus       309 ~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-~~~~e~-~~~~~~~~~---  382 (452)
                      . ..++..+|++|+|+|++++.+++....+.....        .+.|+++|+||+|+.+. ....+. ...+.+.++   
T Consensus        77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (174)
T cd01895          77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD  148 (174)
T ss_pred             HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence            1 235789999999999999888776543322222        24899999999999752 122222 233333333   


Q ss_pred             CCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      ..+++++||+++.|+.++++++.+.
T Consensus       149 ~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         149 YAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CCceEEEeccCCCCHHHHHHHHHHh
Confidence            3458999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.74  E-value=6e-18  Score=175.90  Aligned_cols=149  Identities=17%  Similarity=0.184  Sum_probs=114.9

Q ss_pred             CcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh--------h
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM--------S  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~--------~  309 (452)
                      ..++|+++|.+|+|||||+|++++... .....++++.|+....+.+   ++  ..+.+|||+|++.+...        .
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~---~g--~~i~l~DT~G~~~~~~~ie~~gi~~~  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL---DG--IPLRLIDTAGIRETDDEVEKIGIERS  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE---CC--eEEEEEeCCCCCCCccHHHHHHHHHH
Confidence            358999999999999999999998653 4566677888887777766   44  56889999998765422        1


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ..+++++|++|+|||++++.++++...|..    .      .++|+++|+||+|+.+.... .      ...+ .+++++
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~------~~~piiiV~NK~DL~~~~~~-~------~~~~-~~~i~i  350 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE----L------KDKPVIVVLNKADLTGEIDL-E------EENG-KPVIRI  350 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh----c------CCCCcEEEEEhhhccccchh-h------hccC-CceEEE
Confidence            236889999999999999988887655543    1      34899999999999751111 1      2223 348999


Q ss_pred             cCCCCccHHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~  410 (452)
                      ||++|.|++++++++.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=2.2e-17  Score=171.22  Aligned_cols=168  Identities=13%  Similarity=0.086  Sum_probs=118.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhh---hhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMS---RVY  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~---~~~  312 (452)
                      ..+|+++|.||+|||||+|+|++.+......+.++++...-.+.+   .  ...|+||||||...    ...+.   ...
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~---~--~~~f~laDtPGliegas~g~gLg~~fLrh  233 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA---G--DTRFTVADVPGLIPGASEGKGLGLDFLRH  233 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE---C--CeEEEEEECCCCccccchhhHHHHHHHHH
Confidence            378999999999999999999986554444566666655555544   3  35789999999632    11121   234


Q ss_pred             hcCCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhhhh-------cCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc
Q psy14768        313 YQNSDGCIIMFDLTNR----KSFESVVQWKHDLDSKCIL-------DNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY  381 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~----~S~~~~~~~~~~i~~~~~~-------~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~  381 (452)
                      ++++|++|+|+|+++.    ..++++..|..++..+...       .....+|+|||+||+|+.+.....+.........
T Consensus       234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~  313 (500)
T PRK12296        234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR  313 (500)
T ss_pred             HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc
Confidence            7889999999999853    3566777777777655210       0124689999999999975222223333344455


Q ss_pred             CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        382 NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       382 ~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ++. ++++||+++.||++++.++.+.+...+.
T Consensus       314 g~~-Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        314 GWP-VFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             CCe-EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            654 9999999999999999999998876553

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=2e-17  Score=168.46  Aligned_cols=167  Identities=14%  Similarity=0.071  Sum_probs=122.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMSRVYY  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~~~~i  313 (452)
                      ..|+++|.||||||||+|++++.+......+.+++....-.+.+   . ....++|+||||..+-.       ......+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~---~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i  235 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV---D-DERSFVVADIPGLIEGASEGAGLGIRFLKHL  235 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe---C-CCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence            57999999999999999999987666666676766665555544   2 23458899999974311       1112358


Q ss_pred             cCCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-EEEEe
Q psy14768        314 QNSDGCIIMFDLT---NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-SWIEV  389 (452)
Q Consensus       314 ~~ad~vIlV~D~t---~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-~~~ev  389 (452)
                      +++|++++|+|++   +...+++...|..++..+.  .....+|++||+||+|+.......+.++++.+.+++. .++.+
T Consensus       236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~--~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~I  313 (390)
T PRK12298        236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS--PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLI  313 (390)
T ss_pred             HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh--hhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEE
Confidence            8999999999998   4567777788888877651  1124689999999999975332334555566665542 48999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ||+++.+|+++++++.+.+.+...
T Consensus       314 SA~tg~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        314 SAASGLGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             ECCCCcCHHHHHHHHHHHhhhCcc
Confidence            999999999999999998866543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.73  E-value=2.8e-17  Score=175.05  Aligned_cols=155  Identities=14%  Similarity=0.212  Sum_probs=118.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ....+|+++|+.++|||||++++.+..+...+.++++.++....+.+   ++. ..+.||||||++.|..++...+..+|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~---~~~-~~i~~iDTPGhe~F~~~r~rga~~aD  160 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN---EDG-KMITFLDTPGHEAFTSMRARGAKVTD  160 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE---CCC-cEEEEEECCCCcchhhHHHhhhccCC
Confidence            45678999999999999999999988887777777877776666655   332 26889999999999999998999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--------CEEEEe
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--------MSWIEV  389 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--------~~~~ev  389 (452)
                      ++|||||++++..-+..+.+.. ..       ..++|+++++||+|+.+  ...+++...+...++        .+|+++
T Consensus       161 iaILVVda~dgv~~qT~e~i~~-~~-------~~~vPiIVviNKiDl~~--~~~e~v~~~L~~~g~~~~~~~~~~~~v~i  230 (587)
T TIGR00487       161 IVVLVVAADDGVMPQTIEAISH-AK-------AANVPIIVAINKIDKPE--ANPDRVKQELSEYGLVPEDWGGDTIFVPV  230 (587)
T ss_pred             EEEEEEECCCCCCHhHHHHHHH-HH-------HcCCCEEEEEECccccc--CCHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence            9999999998654444433322 11       23589999999999864  223344444433321        358999


Q ss_pred             cCCCCccHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~  406 (452)
                      ||++|.|++++|+++..
T Consensus       231 SAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       231 SALTGDGIDELLDMILL  247 (587)
T ss_pred             ECCCCCChHHHHHhhhh
Confidence            99999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.73  E-value=4.8e-17  Score=166.64  Aligned_cols=163  Identities=12%  Similarity=0.118  Sum_probs=118.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhhhhh---h
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMSRVY---Y  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~~~~---i  313 (452)
                      ..|+++|.||||||||+|++++.+......+.++.+...-.+.+   + ....+.|||+||...    ...+...+   +
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~---~-~~~~~~laD~PGliega~~~~gLg~~fLrhi  234 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVET---D-DGRSFVMADIPGLIEGASEGVGLGHQFLRHI  234 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEE---e-CCceEEEEECCCCcccccccchHHHHHHHHH
Confidence            68999999999999999999986543333455554443333333   2 145688999999742    22233333   5


Q ss_pred             cCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        314 QNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      ++++++|+|+|+++.   .++++...|..++..+.  .....+|++||+||+|+.+   ..+.++++.+.++. +++++|
T Consensus       235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~--~~L~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~-~i~~iS  308 (424)
T PRK12297        235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN--PRLLERPQIVVANKMDLPE---AEENLEEFKEKLGP-KVFPIS  308 (424)
T ss_pred             hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc--hhccCCcEEEEEeCCCCcC---CHHHHHHHHHHhCC-cEEEEe
Confidence            679999999999865   67888888888887751  1124699999999999853   23455667777764 489999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhhh
Q psy14768        391 SKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      |+++.|++++++++.+.+.+.+.
T Consensus       309 A~tgeGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        309 ALTGQGLDELLYAVAELLEETPE  331 (424)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999988766543

>KOG1673|consensus

Probab=99.73  E-value=2.7e-17  Score=141.08  Aligned_cols=165  Identities=25%  Similarity=0.468  Sum_probs=143.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||.++|++..|||||+-++.++.+...+..+.|.++..+++.+   .+..+.+.+||..|++++..+.+....++-+
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i---~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI---RGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe---cceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            3589999999999999999999999888888899999999999999   8999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC------CcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD------RQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~------~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ++++||++.+.+...+..|+.+....    +..-+| |+||+|.|+.-      .+....+.+.+++-++.. .||+|+.
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~----NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs-L~F~Sts  169 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGL----NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS-LFFCSTS  169 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhcc----CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc-EEEeecc
Confidence            99999999999999999999988765    334455 56899999742      233344577788888887 9999999


Q ss_pred             CCccHHHHHHHHHHHHHHhh
Q psy14768        393 EHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~~~  412 (452)
                      .+.||+++|.-++..+.+..
T Consensus       170 ~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             ccccHHHHHHHHHHHHhCCc
Confidence            99999999999988877543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.73  E-value=3.2e-17  Score=144.94  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=107.3

Q ss_pred             ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSRV  311 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~~  311 (452)
                      ++|+++|++|+|||||++++.+.... ....++++.++....+..   +  ...+.+|||+|...+..        ....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI---G--GIPVRLIDTAGIRETEDEIEKIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe---C--CEEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence            57999999999999999999986542 344456666655545444   3  46788999999765432        1234


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++.++|++++|+|++++.+..+...+..          ...+|+++|+||+|+.+....      .....+ .+++++||
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~------~~~~~~-~~~~~~Sa  139 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL------LSLLAG-KPIIAISA  139 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc------ccccCC-CceEEEEC
Confidence            6789999999999999888877765443          134899999999999762211      222223 34899999


Q ss_pred             CCCccHHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i  408 (452)
                      +++.|++++++++...+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999987753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=1.7e-17  Score=166.57  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=118.8

Q ss_pred             ccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-----hh----hhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-----YI----CMSR  310 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-----~~----~~~~  310 (452)
                      ..|+|+|+||||||||.|||++ +..+++..|++++|.......+   .+.  .|.++||+|.+.     +.    ....
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~---~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~   78 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW---LGR--EFILIDTGGLDDGDEDELQELIREQAL   78 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE---cCc--eEEEEECCCCCcCCchHHHHHHHHHHH
Confidence            5699999999999999999998 4566778899999988888877   444  477889999763     22    1224


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      ..+..||++|||+|...+.+-+|-........        .++|+|||+||+|-.    ..+....-.-.+|+...+.+|
T Consensus        79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--------~~kpviLvvNK~D~~----~~e~~~~efyslG~g~~~~IS  146 (444)
T COG1160          79 IAIEEADVILFVVDGREGITPADEEIAKILRR--------SKKPVILVVNKIDNL----KAEELAYEFYSLGFGEPVPIS  146 (444)
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--------cCCCEEEEEEcccCc----hhhhhHHHHHhcCCCCceEee
Confidence            46899999999999999887776544322222        349999999999964    234444455567877789999


Q ss_pred             CCCCccHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~  409 (452)
                      |..|.|+.+|++++++.+-
T Consensus       147 A~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         147 AEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             hhhccCHHHHHHHHHhhcC
Confidence            9999999999999999873

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.72  E-value=2.4e-16  Score=171.89  Aligned_cols=156  Identities=15%  Similarity=0.196  Sum_probs=116.9

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ......|+++|..++|||||+++|.+..+.....++++.+.....+.+   +  ...+.||||||++.|..++..++..+
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~---~--~~~ItfiDTPGhe~F~~m~~rga~~a  361 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET---N--GGKITFLDTPGHEAFTAMRARGAQVT  361 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE---C--CEEEEEEECCCCccchhHHHhhhhhC
Confidence            345688999999999999999999887777666677777666666655   4  35688999999999999999899999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH-------HHHHcC-CCEEEE
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA-------VCHQYN-FMSWIE  388 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~-------~~~~~~-~~~~~e  388 (452)
                      |++|||||++++..-+..+.|...        ...++|+|||+||+|+.+.  ..+.+..       +...++ ..+|++
T Consensus       362 DiaILVVdAddGv~~qT~e~i~~a--------~~~~vPiIVviNKiDl~~a--~~e~V~~eL~~~~~~~e~~g~~vp~vp  431 (787)
T PRK05306        362 DIVVLVVAADDGVMPQTIEAINHA--------KAAGVPIIVAINKIDKPGA--NPDRVKQELSEYGLVPEEWGGDTIFVP  431 (787)
T ss_pred             CEEEEEEECCCCCCHhHHHHHHHH--------HhcCCcEEEEEECcccccc--CHHHHHHHHHHhcccHHHhCCCceEEE
Confidence            999999999986543443333221        1235899999999999641  1222221       122232 245999


Q ss_pred             ecCCCCccHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~  407 (452)
                      +||++|.||+++|+++...
T Consensus       432 vSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        432 VSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EeCCCCCCchHHHHhhhhh
Confidence            9999999999999998763

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.72  E-value=2.8e-17  Score=165.52  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=118.9

Q ss_pred             CcccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh--------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS--------  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~--------  309 (452)
                      ..++++|+|+||||||||+|.|++ ++-+++..+++++|+....+.+     .++.+.++||||.+.-....        
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-----~G~pv~l~DTAGiRet~d~VE~iGIeRs  290 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-----NGIPVRLVDTAGIRETDDVVERIGIERA  290 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-----CCEEEEEEecCCcccCccHHHHHHHHHH
Confidence            468999999999999999999998 7788999999999999999988     45678888999987543222        


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ...+++||.+++|+|++.+.+-++...+. .        ...++|+++|.||.||......    ..+ +-..-.+++.+
T Consensus       291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~--------~~~~~~~i~v~NK~DL~~~~~~----~~~-~~~~~~~~i~i  356 (454)
T COG0486         291 KKAIEEADLVLFVLDASQPLDKEDLALIE-L--------LPKKKPIIVVLNKADLVSKIEL----ESE-KLANGDAIISI  356 (454)
T ss_pred             HHHHHhCCEEEEEEeCCCCCchhhHHHHH-h--------cccCCCEEEEEechhccccccc----chh-hccCCCceEEE
Confidence            23588999999999999875555543322 1        2356999999999999862211    111 11122248999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ||++|.|++.+.+.+.+.+...
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999998888776

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.72  E-value=5e-17  Score=168.73  Aligned_cols=152  Identities=17%  Similarity=0.145  Sum_probs=113.0

Q ss_pred             cEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc--------chhhhhhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ--------DRYICMSRVY  312 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~--------e~~~~~~~~~  312 (452)
                      +|+++|++|||||||+|++++.+. .....++++.+.....+.+   ++  ..+.+|||+|.        +.+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~---~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW---GG--REFILIDTGGIEEDDDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE---CC--eEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            589999999999999999998653 3455577777776666655   44  45889999996        3344455667


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ++.+|++|+|+|+.++.+..+... ...+.+.       ++|+++|+||+|+.+....   . .....+++..++++||+
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i-~~~l~~~-------~~piilVvNK~D~~~~~~~---~-~~~~~lg~~~~~~vSa~  143 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEI-AKWLRKS-------GKPVILVANKIDGKKEDAV---A-AEFYSLGFGEPIPISAE  143 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHH-HHHHHHh-------CCCEEEEEECccCCccccc---H-HHHHhcCCCCeEEEeCC
Confidence            899999999999998776665432 2233322       4899999999998752211   1 22346777668999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~  410 (452)
                      +|.|+.++++++.+.+..
T Consensus       144 ~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       144 HGRGIGDLLDAILELLPE  161 (429)
T ss_pred             cCCChHHHHHHHHHhcCc
Confidence            999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.72  E-value=1.6e-17  Score=140.92  Aligned_cols=117  Identities=26%  Similarity=0.480  Sum_probs=85.3

Q ss_pred             cEEEeeecccCCcceeeeccccccc--cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL--DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~--~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ||+|+|.+|+|||||+++|++..+.  ..+....+..+.......   ......+.+||++|++.+...+..++.++|++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~   77 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV---DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAV   77 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE---TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe---cCCceEEEEEecCccceecccccchhhcCcEE
Confidence            6899999999999999999987665  122233333333334444   66666799999999998888877789999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                      |+|||++++.||+.+..++..+.....  ...++|++||+||.|
T Consensus        78 ilv~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D  119 (119)
T PF08477_consen   78 ILVYDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred             EEEEcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence            999999999999998655443333310  135599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=4.4e-17  Score=169.48  Aligned_cols=149  Identities=15%  Similarity=0.117  Sum_probs=109.4

Q ss_pred             ccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSRV  311 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~~  311 (452)
                      .+|+++|++|||||||+|+|++.+. .....++++.+.....+.+   ++  ..+.+|||+|++.        +......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~---~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW---LG--REFILIDTGGIEPDDDGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE---CC--cEEEEEECCCCCCcchhHHHHHHHHHHH
Confidence            5799999999999999999998653 3445567777776666666   44  6789999999876        2223345


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++..+|++|+|+|++++.+..+... ...+..       .++|+++|+||+|+.+.   .+...++ ..+++..++++||
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~-~~~l~~-------~~~piilv~NK~D~~~~---~~~~~~~-~~lg~~~~~~iSa  144 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEI-AKILRK-------SNKPVILVVNKVDGPDE---EADAYEF-YSLGLGEPYPISA  144 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHH-HHHHHH-------cCCcEEEEEECccCccc---hhhHHHH-HhcCCCCCEEEEe
Confidence            7899999999999998766544322 112222       24899999999997542   1222233 3556655799999


Q ss_pred             CCCccHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVD  406 (452)
Q Consensus       392 ktg~nv~~lf~~i~~  406 (452)
                      ++|.|+.++|+.+..
T Consensus       145 ~~g~gv~~l~~~I~~  159 (435)
T PRK00093        145 EHGRGIGDLLDAILE  159 (435)
T ss_pred             eCCCCHHHHHHHHHh
Confidence            999999999999987

>KOG0096|consensus

Probab=99.72  E-value=1.4e-17  Score=147.68  Aligned_cols=167  Identities=26%  Similarity=0.506  Sum_probs=142.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++++++|+.+.||++++++.+...|...+.+|+|.+.....+..   +...+.|..|||+|||++..++..+|-++.
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t---n~g~irf~~wdtagqEk~gglrdgyyI~~q   84 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT---NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQ   84 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec---ccCcEEEEeeecccceeecccccccEEecc
Confidence            45789999999999999999999999999999999999887666555   555799999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++|++||++...++.++..|...+.+.+     .++||+++|||.|...+++- ...-.+.++.++. |+++||+++.|.
T Consensus        85 cAiimFdVtsr~t~~n~~rwhrd~~rv~-----~NiPiv~cGNKvDi~~r~~k-~k~v~~~rkknl~-y~~iSaksn~Nf  157 (216)
T KOG0096|consen   85 CAIIMFDVTSRFTYKNVPRWHRDLVRVR-----ENIPIVLCGNKVDIKARKVK-AKPVSFHRKKNLQ-YYEISAKSNYNF  157 (216)
T ss_pred             eeEEEeeeeehhhhhcchHHHHHHHHHh-----cCCCeeeeccceeccccccc-cccceeeecccce-eEEeeccccccc
Confidence            9999999999999999999999988774     56999999999998654321 1222344444555 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q psy14768        398 EDSMNFLVDRIICSKRM  414 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~  414 (452)
                      +.-|.++++.+......
T Consensus       158 ekPFl~LarKl~G~p~L  174 (216)
T KOG0096|consen  158 ERPFLWLARKLTGDPSL  174 (216)
T ss_pred             ccchHHHhhhhcCCCCe
Confidence            99999999998776553

>KOG3883|consensus

Probab=99.71  E-value=5.5e-17  Score=138.91  Aligned_cols=167  Identities=19%  Similarity=0.331  Sum_probs=138.2

Q ss_pred             cccEEEeeecccCCcceeeeccccc--cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-hhhhhhhhcCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK--FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-ICMSRVYYQNS  316 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~--~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~~~~~~~i~~a  316 (452)
                      ..|++++|..+||||+++.+++-..  ....+.+|+.. ++...+...  ++-.-++.|+||+|...+ ..+..+|+..+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~--rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETD--RGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecC--CChhheEEEeecccccCchhhhhHhHhccC
Confidence            4789999999999999999988533  22455666664 433344331  455678999999998777 56668899999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |+++||||..+++||+.++.+-..|..+.   ....+||++++||+|+.+ +++..+.+..|+..-... .++++|.+..
T Consensus        86 DafVLVYs~~d~eSf~rv~llKk~Idk~K---dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk-l~eVta~dR~  161 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVELLKKEIDKHK---DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK-LWEVTAMDRP  161 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhhcc---ccccccEEEEechhhcccchhcCHHHHHHHHhhhhee-EEEEEeccch
Confidence            99999999999999999998888887763   567899999999999988 889999999999998887 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhhh
Q psy14768        396 MIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~  413 (452)
                      .+-+-|..++..+.....
T Consensus       162 sL~epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  162 SLYEPFTYLASRLHQPQS  179 (198)
T ss_pred             hhhhHHHHHHHhccCCcc
Confidence            999999999988765544

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.71  E-value=5.8e-17  Score=148.11  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=98.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----------chhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----------DRYIC  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----------e~~~~  307 (452)
                      ....+|+++|.+|+|||||+|++++..+...+.++.+.......+..   ++   .+.+|||+|.          +.+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---ND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---CC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            34689999999999999999999987644444344332222222222   22   5889999994          23444


Q ss_pred             hhhhhhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHc
Q psy14768        308 MSRVYYQN---SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQY  381 (452)
Q Consensus       308 ~~~~~i~~---ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~  381 (452)
                      +...+++.   +|++|+|+|++++.+..+...+ ..+..       .++|+++|+||+|+.+   .+...+++++++...
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~-~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~  161 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEML-EWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD  161 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence            44456554   5899999999987777666433 33322       2489999999999975   222344555555555


Q ss_pred             CC-CEEEEecCCCCccHH
Q psy14768        382 NF-MSWIEVSSKEHLMIE  398 (452)
Q Consensus       382 ~~-~~~~evSAktg~nv~  398 (452)
                      +. ..++++||++|+|++
T Consensus       162 ~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCceEEEECCCCCCCC
Confidence            32 258999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.71  E-value=9.7e-17  Score=173.43  Aligned_cols=160  Identities=13%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      .....|+++|..++|||||+++|....+.....++++.++....+.+. +++....+.||||||++.|..++..++..+|
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~-~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE-YKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE-ecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            456789999999999999999999877766666666655544443331 1445688999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-------HHcC-CCEEEEe
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-------HQYN-FMSWIEV  389 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-------~~~~-~~~~~ev  389 (452)
                      ++|||||++++...+..+.|.. +.       ..++|+|||+||+|+...  ..+.+.+.+       ..++ ..+++++
T Consensus       321 iaILVVDA~dGv~~QT~E~I~~-~k-------~~~iPiIVViNKiDl~~~--~~e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAINY-IQ-------AANVPIIVAINKIDKANA--NTERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             EEEEEEECcCCCChhhHHHHHH-HH-------hcCceEEEEEECCCcccc--CHHHHHHHHHHhccchHhhCCCceEEEE
Confidence            9999999998755444443332 22       235899999999998641  222222222       2222 3469999


Q ss_pred             cCCCCccHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i  408 (452)
                      ||++|.||+++|++++...
T Consensus       391 SAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        391 SASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ECCCCCCHHHHHHhhhhhh
Confidence            9999999999999987763

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.70  E-value=1.5e-16  Score=146.96  Aligned_cols=156  Identities=18%  Similarity=0.227  Sum_probs=105.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----------chhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----------DRYICM  308 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----------e~~~~~  308 (452)
                      ..++|+++|.+|+|||||++++++..+...+.++.+.........      ....+.||||+|.          +.+..+
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~------~~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE------VNDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe------cCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            458899999999999999999998766555555544322211111      1257899999994          344445


Q ss_pred             hhhhhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcC
Q psy14768        309 SRVYYQNS---DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYN  382 (452)
Q Consensus       309 ~~~~i~~a---d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~  382 (452)
                      ...+++.+   +++++|+|++++.+..+... ...+..       .++|+++|+||+|+.+   .+...+++..+.....
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i-~~~l~~-------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~  168 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQM-IEWLKE-------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD  168 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHHH-HHHHHH-------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence            45555544   68889999988765544321 222221       2489999999999975   1222233444444443


Q ss_pred             CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      . .++++||+++.|++++|+.+.+.+.
T Consensus       169 ~-~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        169 D-EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             C-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4 4899999999999999999887653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.70  E-value=1.1e-16  Score=171.10  Aligned_cols=158  Identities=15%  Similarity=0.189  Sum_probs=118.2

Q ss_pred             ccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      +.|+++|.+|+|||||+++|.+   +.+..++..+++.++....+..   ++  ..+.||||||+++|...+..++.++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~---~~--~~v~~iDtPGhe~f~~~~~~g~~~aD   75 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL---PD--YRLGFIDVPGHEKFISNAIAGGGGID   75 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe---CC--EEEEEEECCCHHHHHHHHHhhhccCC
Confidence            3589999999999999999986   3455566678888877666655   44  77899999999999988888899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C--cccHHHHHHHHHHcC---CCEEEEec
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R--QVEINEIEAVCHQYN---FMSWIEVS  390 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~--~~~~e~~~~~~~~~~---~~~~~evS  390 (452)
                      ++|+|+|++++...+..+.+ ..+..       .++| ++||+||+|+.+ .  ....+++.+++...+   ..+++++|
T Consensus        76 ~aILVVDa~~G~~~qT~ehl-~il~~-------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS  147 (581)
T TIGR00475        76 AALLVVDADEGVMTQTGEHL-AVLDL-------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS  147 (581)
T ss_pred             EEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence            99999999985333332221 22222       2367 999999999976 2  123445666666653   24599999


Q ss_pred             CCCCccHHHHHHHHHHHHHHh
Q psy14768        391 SKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~~  411 (452)
                      |++|.|+++++..+...+...
T Consensus       148 A~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       148 AKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCCCCchhHHHHHHHHHHhC
Confidence            999999999999887765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1159 Era GTPase [General function prediction only]

Probab=99.70  E-value=9.2e-17  Score=153.42  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=120.3

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----hhh---h
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-----CMS---R  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-----~~~---~  310 (452)
                      ..-|+|+|+||||||||+|++++.. .+.+..+.+++....-..+.     ...+++|+||||..+-.     .|.   .
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-----~~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-----DNAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-----CCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            3468999999999999999999954 55777888887776666544     36788999999954321     222   3


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc-cHHHHHHHHHHcCCCEEEEe
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV-EINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ..+..+|+++||+|++++..-.+ +..++.+..       .+.|+++++||.|...... .....+.+...+.+...+.+
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi  152 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI  152 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence            46889999999999998654433 223344433       2489999999999887332 34556666677778788999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ||++|.|++.+.+.+...+-+...
T Consensus       153 SA~~g~n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         153 SALKGDNVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             eccccCCHHHHHHHHHHhCCCCCC
Confidence            999999999999999887766544

>PRK00089 era GTPase Era; Reviewed

Probab=99.69  E-value=2e-16  Score=156.01  Aligned_cols=158  Identities=13%  Similarity=0.170  Sum_probs=110.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMSR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~~  310 (452)
                      ...|+++|++|+|||||+|+++++.+. .+..+.++.+.......     ....++.+|||+|.....        ....
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-----~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-----EDDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-----cCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            356899999999999999999987653 34444444443332222     233689999999964322        2223


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ..+.++|++++|+|+++..+..+ ..+...+..       .+.|+++|+||+|+.. .....+....+.+..++..++.+
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~-~~i~~~l~~-------~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~i  151 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGD-EFILEKLKK-------VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPI  151 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhH-HHHHHHHhh-------cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            46789999999999998433222 222333332       2489999999999984 34445566667776777779999


Q ss_pred             cCCCCccHHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~  410 (452)
                      ||+++.|++++++++...+..
T Consensus       152 SA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        152 SALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             cCCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999887643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.69  E-value=2.3e-16  Score=173.08  Aligned_cols=154  Identities=14%  Similarity=0.109  Sum_probs=110.7

Q ss_pred             cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~  310 (452)
                      ..+|+|+|++|||||||+|++++.+. +....++++.+.......+   +  ...+.+|||+|++.        +.....
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~---~--~~~~~liDT~G~~~~~~~~~~~~~~~~~  349 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW---A--GTDFKLVDTGGWEADVEGIDSAIASQAQ  349 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE---C--CEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence            36899999999999999999998543 4455677777766555544   3  35688999999763        223345


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      .+++.+|++|+|+|++++.+..+. .|...+..       .++|+|+|+||+|+.+..   ....++ ..+++...+++|
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d~-~i~~~Lr~-------~~~pvIlV~NK~D~~~~~---~~~~~~-~~lg~~~~~~iS  417 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTDE-RIVRMLRR-------AGKPVVLAVNKIDDQASE---YDAAEF-WKLGLGEPYPIS  417 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHh-------cCCCEEEEEECcccccch---hhHHHH-HHcCCCCeEEEE
Confidence            578999999999999876544432 34444433       359999999999986421   112222 234444468999


Q ss_pred             CCCCccHHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~  410 (452)
                      |++|.||+++|+++++.+..
T Consensus       418 A~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCCCchHHHHHHHHhccc
Confidence            99999999999999988744

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.68  E-value=1.3e-16  Score=170.66  Aligned_cols=146  Identities=18%  Similarity=0.187  Sum_probs=110.8

Q ss_pred             eecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh------hhhhh--cCCCE
Q psy14768        247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM------SRVYY--QNSDG  318 (452)
Q Consensus       247 G~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~------~~~~i--~~ad~  318 (452)
                      |++|||||||+|++.+..+...+.++++.+.....+.+   ++  ..+++|||||+..+...      ...++  ..+|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~---~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDv   75 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF---QG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDL   75 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE---CC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCE
Confidence            88999999999999998777777788888887776666   44  45789999999876543      23343  47999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +++|+|+++.+.  .+ .+..++.+       .++|+++|+||+|+.+......+.+++.+.++.. ++++||++|.|++
T Consensus        76 vI~VvDat~ler--~l-~l~~ql~~-------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~  144 (591)
T TIGR00437        76 VVNVVDASNLER--NL-YLTLQLLE-------LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTSATEGRGIE  144 (591)
T ss_pred             EEEEecCCcchh--hH-HHHHHHHh-------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEECCCCCCHH
Confidence            999999987432  12 22222221       3589999999999975222234567888888876 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|+++.+..
T Consensus       145 eL~~~i~~~~  154 (591)
T TIGR00437       145 RLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.68  E-value=1.4e-16  Score=146.89  Aligned_cols=158  Identities=18%  Similarity=0.232  Sum_probs=112.4

Q ss_pred             cccEEEeeecccCCcceeeecccccccc------------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLD------------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~------------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ..+|+++|+.++|||||+++|+......                  +.....+.+.....+..   ......+.|+||||
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~---~~~~~~i~~iDtPG   79 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK---NENNRKITLIDTPG   79 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB---TESSEEEEEEEESS
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc---cccccceeeccccc
Confidence            3679999999999999999998532111                  11123334444444431   24567788999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHH-HHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIE-AVC  378 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~-~~~  378 (452)
                      +..|...+...+..+|++|+|+|+.++...+..+.+.......        +|+++|+||+|+.+  .....+++. .+.
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~--------~p~ivvlNK~D~~~~~~~~~~~~~~~~l~  151 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG--------IPIIVVLNKMDLIEKELEEIIEEIKEKLL  151 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT---------SEEEEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred             ccceeecccceecccccceeeeecccccccccccccccccccc--------cceEEeeeeccchhhhHHHHHHHHHHHhc
Confidence            9999888888899999999999999887766655554443433        88999999999974  111122222 444


Q ss_pred             HHcC-----CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        379 HQYN-----FMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       379 ~~~~-----~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      +..+     ..+++++||++|.|+.++++.+.+.+
T Consensus       152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            4443     34689999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04163 Era Era subfamily

Probab=99.68  E-value=3.9e-16  Score=138.73  Aligned_cols=155  Identities=14%  Similarity=0.124  Sum_probs=105.3

Q ss_pred             cccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------hhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------MSR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------~~~  310 (452)
                      ..+|+++|.+|+|||||+|++++..+.. ...+.++.......  .   ....+.+.+|||+|......        ...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--Y---TDDDAQIIFVDTPGIHKPKKKLGERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--E---EcCCeEEEEEECCCCCcchHHHHHHHHHHHH
Confidence            4689999999999999999999865432 22222222221211  1   33456789999999754322        234


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ..+..+|++++|+|++++.+... ..+...+...       +.|+++|+||+|+.. .....+....+....+..+++++
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~-~~~~~~~~~~-------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGD-EFILELLKKS-------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI  149 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchH-HHHHHHHHHh-------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence            46889999999999998733222 2233333332       489999999999974 33334445555555555668999


Q ss_pred             cCCCCccHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~  407 (452)
                      |++++.+++++|+.+.+.
T Consensus       150 s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         150 SALKGENVDELLEEIVKY  167 (168)
T ss_pred             EeccCCChHHHHHHHHhh
Confidence            999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.67  E-value=4.6e-16  Score=165.57  Aligned_cols=162  Identities=12%  Similarity=0.074  Sum_probs=107.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-------------CeeEEEEEEecCCcchhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------------GRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-------------~~~~~l~l~DtaG~e~~~  306 (452)
                      ..-|+++|++|+|||||+|+|.+..+......+++.+.....+......             .+...+.||||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3568999999999999999999887765554545443332222220000             011238899999999999


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc------------ccHHH
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ------------VEINE  373 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~------------~~~e~  373 (452)
                      .++..+++.+|++|||||++++...+..+.+. .+..       .++|++||+||+|+.+ ..            ...+.
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~l~~-------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-HHHH-------cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            99999999999999999999854333332221 1221       2589999999999963 10            00000


Q ss_pred             H------------HHHHH-------------HcCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        374 I------------EAVCH-------------QYNFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       374 ~------------~~~~~-------------~~~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      +            .++.+             ..+..+++.+||++|+|+++++.++.....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence            0            01111             112346899999999999999998865543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.67  E-value=4.9e-16  Score=166.48  Aligned_cols=161  Identities=16%  Similarity=0.200  Sum_probs=115.9

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cc------ccc--------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FL------DNY--------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~------~~~--------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      -+++|+|..++|||||+.+|+... .+      ..+        ..+++.......+.+...+++.+.+.||||||++.|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            478999999999999999998521 11      000        112222222223333112456789999999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC-
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM-  384 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~-  384 (452)
                      ...+..+++.+|++|+|+|++++...+....|......        ++|+++|+||+|+.+.. ..+...++.+.+++. 
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~--------~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------DLEIIPVLNKIDLPAAD-PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--------CCCEEEEEECCCCCccc-HHHHHHHHHHHhCCCc
Confidence            98899999999999999999998888877777654433        48999999999986411 122334455555543 


Q ss_pred             -EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 -SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 -~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                       .++++||++|.|++++|+++.+.+-.
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence             37999999999999999999887643

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.66  E-value=2.3e-16  Score=147.86  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=99.5

Q ss_pred             cEEEeeecccCCcceeeecccc-ccccc------------------------------cCCcceeeeEEEEEEeeecCCe
Q psy14768        242 PILITGDSTVGKTSYVQGFVQN-KFLDN------------------------------YKNTVGVDFSTKLLSHKKYGGR  290 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~-~~~~~------------------------------~~~t~~~d~~~~~i~~~~~~~~  290 (452)
                      +|+++|.+|+|||||+++|+.. ..+..                              ...+++++.....+..     .
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-----~   75 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-----P   75 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-----C
Confidence            5899999999999999999752 22221                              1134444544444333     4


Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc-
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ-  368 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~-  368 (452)
                      ...+.||||||+++|...+..+++.+|++|+|+|++++..-+....+. .+...      ...++|+|+||+|+.+ .. 
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~-~~~~~------~~~~iIvviNK~D~~~~~~~  148 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSY-ILSLL------GIRHVVVAVNKMDLVDYSEE  148 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHH-HHHHc------CCCcEEEEEEchhcccCCHH
Confidence            557889999999988766667789999999999999875444333222 22222      1245788999999874 11 


Q ss_pred             ---ccHHHHHHHHHHcCC--CEEEEecCCCCccHHHH
Q psy14768        369 ---VEINEIEAVCHQYNF--MSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       369 ---~~~e~~~~~~~~~~~--~~~~evSAktg~nv~~l  400 (452)
                         ...++++++...+++  .+++.+||++|.|+.+.
T Consensus       149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence               122345566667765  34899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.66  E-value=4.9e-16  Score=145.11  Aligned_cols=110  Identities=13%  Similarity=0.198  Sum_probs=76.3

Q ss_pred             EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc--
Q psy14768        292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ--  368 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~--  368 (452)
                      ..+.||||+|++.|...+...+..+|++|+|+|++++. ..+....+ ..+...      ...|++||+||+|+.+..  
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~------~~~~iiivvNK~Dl~~~~~~  155 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM------GLKHIIIVQNKIDLVKEEQA  155 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc------CCCcEEEEEEchhccCHHHH
Confidence            67899999999998877777888999999999999742 11222222 222222      225799999999997511  


Q ss_pred             -ccHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        369 -VEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       369 -~~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                       ...+++++++...  ...+++++||++|.|++++|+++...+
T Consensus       156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence             1223344444432  123489999999999999999998654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0071|consensus

Probab=99.65  E-value=8.6e-16  Score=129.79  Aligned_cols=157  Identities=24%  Similarity=0.353  Sum_probs=122.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .+++|+.+|-.++||||++.++.-+... ...||+|.++..++  +     +.+.|.+||.+||++.+.+|.+||....+
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVt--y-----kN~kfNvwdvGGqd~iRplWrhYy~gtqg   87 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT--Y-----KNVKFNVWDVGGQDKIRPLWRHYYTGTQG   87 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEEEE--e-----eeeEEeeeeccCchhhhHHHHhhccCCce
Confidence            4789999999999999999998865543 45689997766554  3     56889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAkt  393 (452)
                      +|||+|..+.   ++++...+++.+..+.+.-...+++|.+||.|+.+ .....++..+.+-     ..+. ...++|.+
T Consensus        88 lIFV~Dsa~~---dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~-A~~pqei~d~leLe~~r~~~W~-vqp~~a~~  162 (180)
T KOG0071|consen   88 LIFVVDSADR---DRIEEARNELHRIINDREMRDAIILILANKQDLPD-AMKPQEIQDKLELERIRDRNWY-VQPSCALS  162 (180)
T ss_pred             EEEEEeccch---hhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc-ccCHHHHHHHhccccccCCccE-eecccccc
Confidence            9999999876   55555556665555555667899999999999986 2334444444322     2222 47899999


Q ss_pred             CccHHHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVDRI  408 (452)
Q Consensus       394 g~nv~~lf~~i~~~i  408 (452)
                      |+++.+-|.|+.+..
T Consensus       163 gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  163 GDGLKEGLSWLSNNL  177 (180)
T ss_pred             chhHHHHHHHHHhhc
Confidence            999999999998754

>cd00880 Era_like Era (E

Probab=99.63  E-value=1.6e-15  Score=133.02  Aligned_cols=151  Identities=18%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             EeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-------hhhhhhcCC
Q psy14768        245 ITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-------MSRVYYQNS  316 (452)
Q Consensus       245 ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-------~~~~~i~~a  316 (452)
                      ++|.+|+|||||++++.+.... .....+.+.+........   . ....+.+|||+|+..+..       ....++..+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~   76 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL---G-PLGPVVLIDTPGIDEAGGLGREREELARRVLERA   76 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe---c-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhC
Confidence            5899999999999999975444 444444444444443332   1 156789999999876543       334578999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHH---HHHHHHHcCCCEEEEecCCC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINE---IEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~---~~~~~~~~~~~~~~evSAkt  393 (452)
                      |++++|+|+++..+..... +......       .+.|+++|+||+|+.......+.   ...........+++++||++
T Consensus        77 d~il~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  148 (163)
T cd00880          77 DLILFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALT  148 (163)
T ss_pred             CEEEEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeec
Confidence            9999999999988777665 3333322       35999999999998752111111   11222233344589999999


Q ss_pred             CccHHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVDR  407 (452)
Q Consensus       394 g~nv~~lf~~i~~~  407 (452)
                      +.|+.++++++.+.
T Consensus       149 ~~~v~~l~~~l~~~  162 (163)
T cd00880         149 GEGIDELREALIEA  162 (163)
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.63  E-value=2.3e-15  Score=140.52  Aligned_cols=120  Identities=21%  Similarity=0.311  Sum_probs=89.5

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC-CEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS-DGCI  320 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a-d~vI  320 (452)
                      +|+++|++++|||+|+++|....+...+.++ ..+........   .+....+.+|||||+.+++..+..+++.+ +++|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~---~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV   77 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNS---EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV   77 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeec---CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence            5899999999999999999988776555333 33332222211   23457799999999999998888899999 9999


Q ss_pred             EEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        321 IMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       321 lV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +|+|+++. .++.++..|+..+..... .....+|++||+||+|+..
T Consensus        78 ~VvD~~~~~~~~~~~~~~l~~il~~~~-~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          78 FVVDSATFQKNLKDVAEFLYDILTDLE-KVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEEECccchhHHHHHHHHHHHHHHHHh-hccCCCCEEEEecchhhcc
Confidence            99999997 677777666655533210 1235799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.63  E-value=2.9e-15  Score=138.90  Aligned_cols=145  Identities=15%  Similarity=0.153  Sum_probs=101.3

Q ss_pred             cccEEEeeecccCCcceeeeccccc-------c---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-------F---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-------~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      .++|+++|..++|||||+++|+...       .         ..+...+++.+.....  +   ..+...+.|+||||+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~---~~~~~~i~~iDtPG~~   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE--Y---ETANRHYAHVDCPGHA   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE--e---cCCCeEEEEEECcCHH
Confidence            4689999999999999999997520       0         0111334444443333  2   4456678899999999


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHHHHH
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIEAVC  378 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~~~~  378 (452)
                      .|.......+..+|++++|+|++++..-+..+.|.. +...       ++| +|+|+||+|+.. .   +...+++.+++
T Consensus        77 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~-~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l  148 (195)
T cd01884          77 DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL-ARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELL  148 (195)
T ss_pred             HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHH-HHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence            887777778899999999999998765555444443 3322       366 789999999964 1   12234566666


Q ss_pred             HHcCC----CEEEEecCCCCccH
Q psy14768        379 HQYNF----MSWIEVSSKEHLMI  397 (452)
Q Consensus       379 ~~~~~----~~~~evSAktg~nv  397 (452)
                      .++++    .+++++||++|.|+
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            66665    56999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.63  E-value=1e-15  Score=158.67  Aligned_cols=153  Identities=12%  Similarity=0.169  Sum_probs=106.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-cc------------------------------cccCCcceeeeEEEEEEeee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-FL------------------------------DNYKNTVGVDFSTKLLSHKK  286 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~------------------------------~~~~~t~~~d~~~~~i~~~~  286 (452)
                      ...++|+++|++++|||||+++|+... .+                              .+...+++.+.....+.   
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~---   80 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE---   80 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe---
Confidence            346889999999999999999998421 11                              11245666666555543   


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN--RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~--~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                        .+.+.+.||||||++.|.......+..+|++|+|+|+++  ...-+....+ ..+...      ...+++||+||+|+
T Consensus        81 --~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~-~~~~~~------~~~~iivviNK~Dl  151 (425)
T PRK12317         81 --TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV-FLARTL------GINQLIVAINKMDA  151 (425)
T ss_pred             --cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH-HHHHHc------CCCeEEEEEEcccc
Confidence              356789999999999887666666789999999999998  3322222222 222221      22469999999999


Q ss_pred             CC-Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHHHHHH
Q psy14768        365 PD-RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       365 ~~-~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~lf~  402 (452)
                      .+ ..    ...+++.+++...++    .+++++||++|.|+.+++.
T Consensus       152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            74 11    223456666666664    4589999999999987553

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.62  E-value=2.8e-15  Score=142.90  Aligned_cols=156  Identities=18%  Similarity=0.228  Sum_probs=103.1

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhhhhhhc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMSRVYYQ  314 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~~~~i~  314 (452)
                      +++++|.+|+|||||++++.+........+.++.+.....+.+     ....+++|||||+....       .....+++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~   76 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-----KGAKIQLLDLPGIIEGAADGKGRGRQVIAVAR   76 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-----CCeEEEEEECCCcccccccchhHHHHHHHhhc
Confidence            6899999999999999999986543333344444444444444     34678899999975332       12245789


Q ss_pred             CCCEEEEEEeCCChhh-HHHHHHHHHHH-----------------------------------------Hhhhh------
Q psy14768        315 NSDGCIIMFDLTNRKS-FESVVQWKHDL-----------------------------------------DSKCI------  346 (452)
Q Consensus       315 ~ad~vIlV~D~t~~~S-~~~~~~~~~~i-----------------------------------------~~~~~------  346 (452)
                      ++|++++|+|+++... .+.+...++..                                         .++..      
T Consensus        77 ~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~  156 (233)
T cd01896          77 TADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL  156 (233)
T ss_pred             cCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence            9999999999987542 22222222110                                         00000      


Q ss_pred             --------------hcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        347 --------------LDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       347 --------------~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                                    ......+|+++|+||+|+..    .++...++..   ..++++||+++.|++++|+.+.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~----~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS----IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             EccCCCHHHHHHHHhCCceEeeEEEEEECccCCC----HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                          00123479999999999864    4444455443   23899999999999999999988653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.62  E-value=1.3e-15  Score=157.99  Aligned_cols=156  Identities=11%  Similarity=0.119  Sum_probs=108.2

Q ss_pred             CCCcccEEEeeecccCCcceeeecccc--ccc-----------------------------cccCCcceeeeEEEEEEee
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQN--KFL-----------------------------DNYKNTVGVDFSTKLLSHK  285 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~--~~~-----------------------------~~~~~t~~~d~~~~~i~~~  285 (452)
                      +...++|+++|..++|||||+++|+..  .+.                             .+...+++.+.....+.  
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~--   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE--   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc--
Confidence            345688999999999999999999842  111                             11233566666555543  


Q ss_pred             ecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHH-HHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        286 KYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW-KHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       286 ~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~-~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                         ...+.+.||||+|+++|.......+..+|++|||||++++.++...+.+ ...+...     ....+++||+||+|+
T Consensus        82 ---~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-----~~~~~iIVviNK~Dl  153 (426)
T TIGR00483        82 ---TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-----LGINQLIVAINKMDS  153 (426)
T ss_pred             ---cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-----cCCCeEEEEEEChhc
Confidence               3567899999999999877666678999999999999998543221111 1112222     123579999999999


Q ss_pred             CC-Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHHHHHH
Q psy14768        365 PD-RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       365 ~~-~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~lf~  402 (452)
                      .+ .+    ...+++.++++..++    .+|+++||++|.||.+++.
T Consensus       154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            74 11    224566677777664    4589999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.62  E-value=3.8e-15  Score=163.21  Aligned_cols=153  Identities=17%  Similarity=0.159  Sum_probs=114.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh----------h
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM----------S  309 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~----------~  309 (452)
                      .++|+++|.||+|||||+|++.+.+......++++.+.....+.     .....+.+|||||+..+...          .
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~-----~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~   77 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFS-----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA   77 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEE-----cCceEEEEEECCCccccccccccccHHHHHH
Confidence            46899999999999999999998766666667777665554443     35567889999998765421          1


Q ss_pred             hhhh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768        310 RVYY--QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       310 ~~~i--~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~  387 (452)
                      ..++  ..+|++++|+|+++....  + .|..++.+.       ++|+++|+||+|+.+......+.+++.+.++.. ++
T Consensus        78 ~~~l~~~~aD~vI~VvDat~ler~--l-~l~~ql~e~-------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-Vv  146 (772)
T PRK09554         78 CHYILSGDADLLINVVDASNLERN--L-YLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VI  146 (772)
T ss_pred             HHHHhccCCCEEEEEecCCcchhh--H-HHHHHHHHc-------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EE
Confidence            2233  479999999999986432  2 233334332       499999999999876333345678888889986 99


Q ss_pred             EecCCCCccHHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~i  408 (452)
                      .+||+++.|++++++.+.+..
T Consensus       147 piSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        147 PLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEeecCCCHHHHHHHHHHhh
Confidence            999999999999999887764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.61  E-value=7.3e-15  Score=130.93  Aligned_cols=152  Identities=19%  Similarity=0.217  Sum_probs=100.0

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc----------hhhhhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD----------RYICMSRV  311 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e----------~~~~~~~~  311 (452)
                      +|+++|.+|+|||||+|.+.+..+.....++.+.......+..   ++   .+.+|||+|..          .+..+...
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   74 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV---ND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE   74 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc---cC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence            4789999999999999999976666555555554433333332   22   78899999942          23444444


Q ss_pred             hhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHH-HcCCC
Q psy14768        312 YYQ---NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCH-QYNFM  384 (452)
Q Consensus       312 ~i~---~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~-~~~~~  384 (452)
                      ++.   +.+++++++|.++..+..... ....+...       +.|+++|+||+|+..   ............+ .....
T Consensus        75 ~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~  146 (170)
T cd01876          75 YLENRENLKGVVLLIDSRHGPTEIDLE-MLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP  146 (170)
T ss_pred             HHHhChhhhEEEEEEEcCcCCCHhHHH-HHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence            544   457899999998764333322 12222222       379999999999964   1112223333333 24445


Q ss_pred             EEEEecCCCCccHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      +++++||+++.++.++++++.+.
T Consensus       147 ~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         147 PIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHh
Confidence            58999999999999999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0076|consensus

Probab=99.59  E-value=2.9e-15  Score=131.23  Aligned_cols=162  Identities=24%  Similarity=0.367  Sum_probs=122.8

Q ss_pred             CcccEEEeeecccCCcceeeecccc-------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN-------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV  311 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~-------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~  311 (452)
                      ..+.+.|+|..|+|||+|+.+.-..       --.....+|.|.+.....+     .  ...+.+||..||+..+++|..
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-----~--~~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-----C--NAPLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-----c--cceeEEEEcCChHHHHHHHHH
Confidence            3578899999999999998765421       1123445677777766554     2  456889999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH---HcCC--CEE
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH---QYNF--MSW  386 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~---~~~~--~~~  386 (452)
                      ||..+|++|+++|+++++-|+........+...-   ...++|+++.+||.|+.+ .....+++..+.   ..+-  .+|
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E---~leg~p~L~lankqd~q~-~~~~~El~~~~~~~e~~~~rd~~~  164 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENE---KLEGAPVLVLANKQDLQN-AMEAAELDGVFGLAELIPRRDNPF  164 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH---HhcCCchhhhcchhhhhh-hhhHHHHHHHhhhhhhcCCccCcc
Confidence            9999999999999999998888876555554331   457799999999999875 222333333333   2221  238


Q ss_pred             EEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ..|||.+|+||++...|+...+...
T Consensus       165 ~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  165 QPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccchhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999999988766

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.59  E-value=1.2e-14  Score=156.09  Aligned_cols=155  Identities=15%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             cEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      -|+++|..++|||||+++|.+   +++..+...+++.+.....+..   . ....+.||||||+++|...+...+..+|+
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~---~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~   77 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ---P-DGRVLGFIDVPGHEKFLSNMLAGVGGIDH   77 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec---C-CCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence            478999999999999999986   4444555566666665444332   2 23357899999999998777778899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCC---cccHHHHHHHHHHcCC--CEEEEecCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDR---QVEINEIEAVCHQYNF--MSWIEVSSK  392 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~---~~~~e~~~~~~~~~~~--~~~~evSAk  392 (452)
                      +++|+|++++..-+..+.+ ..+...       ++| +|||+||+|+.+.   ....+++.+++...++  .+++++||+
T Consensus        78 ~lLVVda~eg~~~qT~ehl-~il~~l-------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~  149 (614)
T PRK10512         78 ALLVVACDDGVMAQTREHL-AILQLT-------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT  149 (614)
T ss_pred             EEEEEECCCCCcHHHHHHH-HHHHHc-------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence            9999999986443333222 222222       245 6899999999751   1223455566655553  458999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRI  408 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i  408 (452)
                      +|.|++++++.|....
T Consensus       150 tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        150 EGRGIDALREHLLQLP  165 (614)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999987654

>PRK10218 GTP-binding protein; Provisional

Probab=99.58  E-value=1.1e-14  Score=155.46  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             ccEEEeeecccCCcceeeeccc--ccccccc------------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ--NKFLDNY------------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~--~~~~~~~------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~  306 (452)
                      -+|+|+|..++|||||+++|+.  +.+....            ..+.+.++......+   ..+.+.+.+|||+|+..|.
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i---~~~~~~inliDTPG~~df~   82 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI---KWNDYRINIVDTPGHADFG   82 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE---ecCCEEEEEEECCCcchhH
Confidence            5799999999999999999986  2222111            123344444444444   5567899999999999999


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCC-
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNF-  383 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~-  383 (452)
                      ..+..+++.+|++|+|+|++++...+....|......        ++|+++|+||+|+..  .....+++..++..++. 
T Consensus        83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--------gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~  154 (607)
T PRK10218         83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--------GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT  154 (607)
T ss_pred             HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--------CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence            9999999999999999999987655555445443333        389999999999865  11222344444322221 


Q ss_pred             -----CEEEEecCCCCc----------cHHHHHHHHHHHHH
Q psy14768        384 -----MSWIEVSSKEHL----------MIEDSMNFLVDRII  409 (452)
Q Consensus       384 -----~~~~evSAktg~----------nv~~lf~~i~~~i~  409 (452)
                           .+++++||++|.          ++..+|+.++..+-
T Consensus       155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence                 238999999998          57888887776654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.57  E-value=2e-14  Score=153.64  Aligned_cols=158  Identities=15%  Similarity=0.169  Sum_probs=103.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeec---CCeeE----------EEEEEecCCcchh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY---GGRPV----------KLQIWDIAGQDRY  305 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~---~~~~~----------~l~l~DtaG~e~~  305 (452)
                      ....|+++|++|+|||||++++.+..+......+++.+...........   .+...          .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            3567999999999999999999876554444443333322221111000   01111          2689999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc--cc---------
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ--VE---------  370 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~--~~---------  370 (452)
                      ..++...+..+|++|+|||++++   .+++.+..    +..       .++|+++|+||+|+.. ..  ..         
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~-------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~  153 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR-------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK  153 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH-------cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence            99998889999999999999984   44444332    221       3589999999999853 10  00         


Q ss_pred             -----HH-------HHHHHHHHc--------------CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        371 -----IN-------EIEAVCHQY--------------NFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       371 -----~e-------~~~~~~~~~--------------~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                           .+       ++..++...              +..+++.+||++|.|+.+++..+...
T Consensus       154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                 00       011112222              23458999999999999999887644

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.57  E-value=7e-15  Score=138.94  Aligned_cols=145  Identities=10%  Similarity=0.124  Sum_probs=96.4

Q ss_pred             cEEEeeecccCCcceeeecccccc--------------------------c-----cccCCcceeeeEEEEEEeeecCCe
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKF--------------------------L-----DNYKNTVGVDFSTKLLSHKKYGGR  290 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~--------------------------~-----~~~~~t~~~d~~~~~i~~~~~~~~  290 (452)
                      .|+++|..++|||||+.+|+...-                          .     .+...+++++.....+..     .
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-----~   75 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-----E   75 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-----C
Confidence            478999999999999998863110                          0     111234455555554444     5


Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                      ...+.+|||+|+..|...+...+..+|++|+|+|+++..       ..+..+.|.. ....      ..+|+++|+||+|
T Consensus        76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~iiivvNK~D  148 (219)
T cd01883          76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ARTL------GVKQLIVAVNKMD  148 (219)
T ss_pred             CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHH-HHHc------CCCeEEEEEEccc
Confidence            577899999999888776667788999999999999842       2223333322 2211      2368999999999


Q ss_pred             CCCC---c----ccHHHHHHHHHHcCC----CEEEEecCCCCccHH
Q psy14768        364 LPDR---Q----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIE  398 (452)
Q Consensus       364 l~~~---~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~  398 (452)
                      +...   .    ...+++..++..+++    .+++.+||++|.||+
T Consensus       149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            9731   1    112233334555554    458999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04167 Snu114p Snu114p subfamily

Probab=99.57  E-value=1.3e-14  Score=136.39  Aligned_cols=149  Identities=17%  Similarity=0.179  Sum_probs=96.6

Q ss_pred             cEEEeeecccCCcceeeeccccccccc-------------------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDN-------------------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~-------------------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      +|+++|..++|||||+++|+.......                   ...+++.......+.+...++..+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999986433221                   0011222222222222111355688999999999


Q ss_pred             chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--C-----------cc
Q psy14768        303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--R-----------QV  369 (452)
Q Consensus       303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~-----------~~  369 (452)
                      +.|......++..+|++|+|+|+++..+++.. .++..+..       .++|+++|+||+|+..  .           ..
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~  153 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-RLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH  153 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence            99988888889999999999999988776543 33333322       2389999999999852  0           00


Q ss_pred             cHHHHHHHHHHcCC------CE----EEEecCCCCccHH
Q psy14768        370 EINEIEAVCHQYNF------MS----WIEVSSKEHLMIE  398 (452)
Q Consensus       370 ~~e~~~~~~~~~~~------~~----~~evSAktg~nv~  398 (452)
                      ..+++..++..+++      .+    +++.||+.+..+.
T Consensus       154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            11223334444433      22    5789999987654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1191|consensus

Probab=99.56  E-value=4.7e-15  Score=149.15  Aligned_cols=169  Identities=16%  Similarity=0.123  Sum_probs=120.0

Q ss_pred             CcccEEEeeecccCCcceeeeccc-cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMS  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~  309 (452)
                      ..++|+|+|+||||||||+|.|.+ ++.+++..+++++|.....+++   ++  +.+.|.||||.++.+        -.+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~---~G--~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV---NG--VPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec---CC--eEEEEEeccccccccCChhHHHhHHH
Confidence            458999999999999999999998 6777899999999999999887   55  556778999987621        111


Q ss_pred             -hhhhcCCCEEEEEEeCCChhhHHHH--HHHHHHHHhhhh--hcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHc-
Q psy14768        310 -RVYYQNSDGCIIMFDLTNRKSFESV--VQWKHDLDSKCI--LDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQY-  381 (452)
Q Consensus       310 -~~~i~~ad~vIlV~D~t~~~S~~~~--~~~~~~i~~~~~--~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~-  381 (452)
                       ...+++||++++|+|+....+.+++  ...+......+.  .+.....+++++.||.|+..  .+..... ..+.... 
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~  420 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEG  420 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eecccccc
Confidence             2358899999999999544333333  345555544431  12235689999999999975  1211111 1111111 


Q ss_pred             --CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        382 --NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       382 --~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                        .+....++|+++++++.++...+...+.....
T Consensus       421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  421 RSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             CcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence              12224789999999999999999988876644

>PRK12736 elongation factor Tu; Reviewed

Probab=99.55  E-value=2.8e-14  Score=146.38  Aligned_cols=157  Identities=17%  Similarity=0.174  Sum_probs=106.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-------c---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-------F---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-------~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ...++|+++|..++|||||+++|++..       +         ..+...+++.+.....  +   ......+.||||||
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~--~---~~~~~~i~~iDtPG   84 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE--Y---ETEKRHYAHVDCPG   84 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE--e---cCCCcEEEEEECCC
Confidence            446889999999999999999997521       0         1112344555543333  3   44556788999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-Cc---ccHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-RQ---VEINEIEA  376 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~~---~~~e~~~~  376 (452)
                      +++|.......+..+|++|+|+|++++..-+..+.|......        ++| +|||+||+|+.+ .+   ...+++.+
T Consensus        85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~  156 (394)
T PRK12736         85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--------GVPYLVVFLNKVDLVDDEELLELVEMEVRE  156 (394)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--------CCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence            998877666777899999999999987555554444332222        377 678999999974 11   12345666


Q ss_pred             HHHHcCC----CEEEEecCCCCc--------cHHHHHHHHHHH
Q psy14768        377 VCHQYNF----MSWIEVSSKEHL--------MIEDSMNFLVDR  407 (452)
Q Consensus       377 ~~~~~~~----~~~~evSAktg~--------nv~~lf~~i~~~  407 (452)
                      ++...++    .+++++||++|.        ++.++++.+.+.
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~  199 (394)
T PRK12736        157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY  199 (394)
T ss_pred             HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence            6666665    468999999983        455565555544

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.54  E-value=1.9e-14  Score=148.09  Aligned_cols=163  Identities=13%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             CcccEEEeeecccCCcceeeecccccc---ccccCCcceeeeEEEEEE--------------eee-cCC------eeEEE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKF---LDNYKNTVGVDFSTKLLS--------------HKK-YGG------RPVKL  294 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~---~~~~~~t~~~d~~~~~i~--------------~~~-~~~------~~~~l  294 (452)
                      ..++|+++|..++|||||+++|.+...   ..+...+++.+.....+.              ... ++.      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            357899999999999999998865211   111111222221111000              000 011      14678


Q ss_pred             EEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---cc
Q psy14768        295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VE  370 (452)
Q Consensus       295 ~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~  370 (452)
                      .+|||||+++|...+...+..+|++|||+|++++. ..+..+.+ ..+...      ...++++|+||+|+.+..   ..
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~~------gi~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEII------GIKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHHc------CCCeEEEEEEccccCCHHHHHHH
Confidence            99999999999888888888999999999999754 22222222 222222      225799999999997511   22


Q ss_pred             HHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        371 INEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       371 ~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      .+++.++....  ...+++++||++|.|+++++++|...+
T Consensus       156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            34444444433  123589999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>CHL00071 tufA elongation factor Tu

Probab=99.54  E-value=4.1e-14  Score=145.80  Aligned_cols=148  Identities=14%  Similarity=0.138  Sum_probs=104.1

Q ss_pred             CCCcccEEEeeecccCCcceeeecccccc----------------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKF----------------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~----------------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                      +...++|+++|.+++|||||+++|++...                ..+...+++.+.....+     ..+...+.|+|||
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-----~~~~~~~~~iDtP   83 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY-----ETENRHYAHVDCP   83 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE-----ccCCeEEEEEECC
Confidence            44568899999999999999999986311                11222455555444333     3355677899999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHH
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIE  375 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~  375 (452)
                      |+.+|.......+..+|++++|+|+.++..-+..+.+......        ++| +|+|+||+|+.+ .   +...+++.
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~  155 (409)
T CHL00071         84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--------GVPNIVVFLNKEDQVDDEELLELVELEVR  155 (409)
T ss_pred             ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            9998877667778899999999999987655555444332222        378 778999999976 1   11224566


Q ss_pred             HHHHHcCC----CEEEEecCCCCccH
Q psy14768        376 AVCHQYNF----MSWIEVSSKEHLMI  397 (452)
Q Consensus       376 ~~~~~~~~----~~~~evSAktg~nv  397 (452)
                      .++...++    .+++++||++|.|+
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhcccc
Confidence            66666664    56899999999754

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.54  E-value=4.3e-14  Score=145.08  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=101.1

Q ss_pred             CCCcccEEEeeecccCCcceeeecccc----------------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQN----------------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~----------------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                      ....++|+++|..++|||||+++|++.                ....+...+++.+.....  +   ......+.|||||
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~--~---~~~~~~~~liDtp   83 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE--Y---ETENRHYAHVDCP   83 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE--E---cCCCEEEEEEECC
Confidence            345688999999999999999999732                011122345555554333  3   4456678899999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEECCCCCC-Cc---ccHHHHH
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLASKCDLPD-RQ---VEINEIE  375 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~NK~Dl~~-~~---~~~e~~~  375 (452)
                      |+++|..........+|++++|+|++++...+..+.+......        ++|. |+|+||+|+.+ .+   ...++++
T Consensus        84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~  155 (394)
T TIGR00485        84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--------GVPYIVVFLNKCDMVDDEELLELVEMEVR  155 (394)
T ss_pred             chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence            9999876666667889999999999986555554444332222        3665 47899999975 11   1234567


Q ss_pred             HHHHHcCC----CEEEEecCCCCc
Q psy14768        376 AVCHQYNF----MSWIEVSSKEHL  395 (452)
Q Consensus       376 ~~~~~~~~----~~~~evSAktg~  395 (452)
                      +++..+++    .+++++||++|.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            77777764    458999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.54  E-value=3.5e-14  Score=145.70  Aligned_cols=157  Identities=16%  Similarity=0.188  Sum_probs=105.6

Q ss_pred             CCcccEEEeeecccCCcceeeecccc-------cc---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQN-------KF---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~-------~~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ...++|+++|.+++|||||+++|++.       .+         ..+...+++.+.....+     .....++.|+||||
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~-----~~~~~~i~~iDtPG   84 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY-----ETANRHYAHVDCPG   84 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE-----cCCCcEEEEEECCC
Confidence            45688999999999999999999851       11         11223455555433332     34556788999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE-EEEECCCCCCC----cccHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL-LLASKCDLPDR----QVEINEIEA  376 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii-lV~NK~Dl~~~----~~~~e~~~~  376 (452)
                      +++|.......+..+|++++|+|+.++...+..+.+. .+..       .++|.+ +|+||+|+.+.    +...+++..
T Consensus        85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~-~~~~-------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~  156 (396)
T PRK12735         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ-------VGVPYIVVFLNKCDMVDDEELLELVEMEVRE  156 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH-HHHH-------cCCCeEEEEEEecCCcchHHHHHHHHHHHHH
Confidence            9988766667788999999999999865544443333 2322       237755 67999999741    122235666


Q ss_pred             HHHHcCC----CEEEEecCCCCc----------cHHHHHHHHHHH
Q psy14768        377 VCHQYNF----MSWIEVSSKEHL----------MIEDSMNFLVDR  407 (452)
Q Consensus       377 ~~~~~~~----~~~~evSAktg~----------nv~~lf~~i~~~  407 (452)
                      ++..+++    .+|+++||++|.          ++.++++.+...
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            7776654    458999999985          455555555543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.54  E-value=3.7e-14  Score=151.64  Aligned_cols=155  Identities=15%  Similarity=0.196  Sum_probs=108.1

Q ss_pred             cEEEeeecccCCcceeeecccc--ccccc--------------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQN--KFLDN--------------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~--~~~~~--------------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      +|+|+|..++|||||+++|+..  .+...              ...+++.......+     .++.+.+.||||||+..|
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-----~~~~~kinlIDTPGh~DF   77 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-----RYNGTKINIVDTPGHADF   77 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-----EECCEEEEEEECCCHHHH
Confidence            5899999999999999999852  21111              11123333333333     335678999999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHHH---
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCHQ---  380 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~~---  380 (452)
                      ...+..+++.+|++|||+|++++..-+. ..|+..+...       ++|+|||+||+|+.+ + ....+++..++..   
T Consensus        78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT-~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~  149 (594)
T TIGR01394        78 GGEVERVLGMVDGVLLLVDASEGPMPQT-RFVLKKALEL-------GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA  149 (594)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCcHHH-HHHHHHHHHC-------CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc
Confidence            9888999999999999999998653333 3444444433       489999999999865 2 1123344444432   


Q ss_pred             ----cCCCEEEEecCCCCc----------cHHHHHHHHHHHHHH
Q psy14768        381 ----YNFMSWIEVSSKEHL----------MIEDSMNFLVDRIIC  410 (452)
Q Consensus       381 ----~~~~~~~evSAktg~----------nv~~lf~~i~~~i~~  410 (452)
                          +.+ +++++||++|.          ++..+|+.+++.+-.
T Consensus       150 ~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       150 DDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             ccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence                233 48999999996          799999988877643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.53  E-value=5e-14  Score=133.44  Aligned_cols=157  Identities=13%  Similarity=0.195  Sum_probs=98.3

Q ss_pred             cEEEeeecccCCcceeeeccccccccccC--------------C---------cceeeeEEEEEEe----------eecC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYK--------------N---------TVGVDFSTKLLSH----------KKYG  288 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~--------------~---------t~~~d~~~~~i~~----------~~~~  288 (452)
                      +|+++|+.++|||||+++|..+.+.....              .         ..+.+.....+.+          ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68899999999999999998644422110              0         0111110000000          0001


Q ss_pred             CeeEEEEEEecCCcchhhhhhhhhhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        289 GRPVKLQIWDIAGQDRYICMSRVYYQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       289 ~~~~~l~l~DtaG~e~~~~~~~~~i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      .....+.|+||||+++|.......+.  .+|++++|+|+.++..-++.+.+......        ++|+++|+||+|+.+
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--------~ip~ivvvNK~D~~~  152 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--------NIPVFVVVTKIDLAP  152 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCEEEEEECccccC
Confidence            23456888999999998765554454  79999999999987765555443332222        389999999999875


Q ss_pred             Cccc---HHHHHHHHHH-------------------------cCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768        367 RQVE---INEIEAVCHQ-------------------------YNFMSWIEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       367 ~~~~---~e~~~~~~~~-------------------------~~~~~~~evSAktg~nv~~lf~~i~~  406 (452)
                      ....   .+++.++...                         ....++|.+||.+|.|++++...|..
T Consensus       153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            2212   2223333321                         11336899999999999999887743

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0074|consensus

Probab=99.52  E-value=1.5e-14  Score=122.46  Aligned_cols=161  Identities=24%  Similarity=0.319  Sum_probs=118.0

Q ss_pred             CCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhh
Q psy14768        234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYY  313 (452)
Q Consensus       234 ~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i  313 (452)
                      ......+++|.++|-.|+|||||+..+..+... ...+|.|.+.....  +    ...+.+.+||.+||+..+..|..||
T Consensus        11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~v~--~----~g~f~LnvwDiGGqr~IRpyWsNYy   83 (185)
T KOG0074|consen   11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKKVE--Y----DGTFHLNVWDIGGQRGIRPYWSNYY   83 (185)
T ss_pred             cCCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEEEe--e----cCcEEEEEEecCCccccchhhhhhh
Confidence            334456799999999999999999998875543 44477775554443  3    3458899999999999999999999


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHH-HhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEE
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDL-DSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWI  387 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i-~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~  387 (452)
                      ++.|++|+|+|.+|..-|+.+..-+-++ +..    ....+|+.|..||.|+.- +...+++..-+     +...+. +.
T Consensus        84 envd~lIyVIDS~D~krfeE~~~el~ELleee----Kl~~vpvlIfankQdllt-aa~~eeia~klnl~~lrdRswh-Iq  157 (185)
T KOG0074|consen   84 ENVDGLIYVIDSTDEKRFEEISEELVELLEEE----KLAEVPVLIFANKQDLLT-AAKVEEIALKLNLAGLRDRSWH-IQ  157 (185)
T ss_pred             hccceEEEEEeCCchHhHHHHHHHHHHHhhhh----hhhccceeehhhhhHHHh-hcchHHHHHhcchhhhhhceEE-ee
Confidence            9999999999999998888885533333 333    456799999999999874 22222221111     111222 57


Q ss_pred             EecCCCCccHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~  407 (452)
                      ++||.++.++..-.+|+...
T Consensus       158 ~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  158 ECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             eCccccccCccCcchhhhcC
Confidence            99999999998888877643

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.51  E-value=6.2e-14  Score=144.38  Aligned_cols=165  Identities=16%  Similarity=0.197  Sum_probs=103.8

Q ss_pred             CCCcccEEEeeecccCCcceeeecccc---ccccccCCcceeeeEEEEEEee------------e---cC--C----eeE
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDFSTKLLSHK------------K---YG--G----RPV  292 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~d~~~~~i~~~------------~---~~--~----~~~  292 (452)
                      ....++|+++|..++|||||+.+|.+.   ....+...+++.+.......+.            .   ++  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            345689999999999999999888642   1111212233332211110000            0   00  0    135


Q ss_pred             EEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc--
Q psy14768        293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV--  369 (452)
Q Consensus       293 ~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~--  369 (452)
                      .+.||||||++.|..........+|++|+|+|++++. ..+....+. .+...      ...|+++|+||+|+.+...  
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~------~i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDII------GIKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc------CCCcEEEEEEeeccccchhHH
Confidence            7899999999988766556667889999999999754 333333322 22221      2257999999999975211  


Q ss_pred             -cHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        370 -EINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       370 -~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                       ..+++..++...  ...+++++||++|.|++++|+.|...+
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence             223444444432  124589999999999999999988765

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.51  E-value=2.9e-13  Score=120.47  Aligned_cols=155  Identities=21%  Similarity=0.320  Sum_probs=116.5

Q ss_pred             CcccEEEeeecccCCcceeeecccccccc--------ccC----CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLD--------NYK----NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~--------~~~----~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~  306 (452)
                      ...||+++|+-++||||++.+++....+.        ++.    -|+..|+....+      .....+.|+|||||++|.
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~------~~~~~v~LfgtPGq~RF~   82 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL------DEDTGVHLFGTPGQERFK   82 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE------cCcceEEEecCCCcHHHH
Confidence            46899999999999999999998755321        111    233445544442      223568899999999999


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC-CCE
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN-FMS  385 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~-~~~  385 (452)
                      -+|..+.+.++++|+++|.+.+..| .....+..+...      ..+|++|++||.||.+ ....++++++..... -.+
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------~~ip~vVa~NK~DL~~-a~ppe~i~e~l~~~~~~~~  154 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------NPIPVVVAINKQDLFD-ALPPEKIREALKLELLSVP  154 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------cCCCEEEEeeccccCC-CCCHHHHHHHHHhccCCCc
Confidence            9999999999999999999999999 334444444433      1299999999999986 345666666666552 334


Q ss_pred             EEEecCCCCccHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~  407 (452)
                      .++++|.+++++.+.++.+...
T Consensus       155 vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         155 VIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeeeecccchhHHHHHHHHHhh
Confidence            8999999999999998887765

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.50  E-value=1.3e-13  Score=131.82  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=78.9

Q ss_pred             cEEEeeecccCCcceeeeccccccc-cc----cCCc-----------ceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL-DN----YKNT-----------VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~-~~----~~~t-----------~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      +|+++|..|+|||||+++++...-. ..    ...+           .+..+......+   ..+.+.+.+|||+|+..|
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDF   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccch
Confidence            4789999999999999999853111 00    0001           111122222222   445678999999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      ...+..+++.+|++|+|+|++++...+.. .++..+...       ++|+++|+||+|+.
T Consensus        78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~-~~~~~~~~~-------~~P~iivvNK~D~~  129 (237)
T cd04168          78 IAEVERSLSVLDGAILVISAVEGVQAQTR-ILWRLLRKL-------NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc-------CCCEEEEEECcccc
Confidence            88888899999999999999988665443 333434332       48999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.50  E-value=1.3e-13  Score=130.12  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             cEEEeeecccCCcceeeecccccc-cccc---------------CCcceeeeEEEEEEeee-----cCCeeEEEEEEecC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKF-LDNY---------------KNTVGVDFSTKLLSHKK-----YGGRPVKLQIWDIA  300 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~-~~~~---------------~~t~~~d~~~~~i~~~~-----~~~~~~~l~l~Dta  300 (452)
                      .|+++|..++|||||+.+|+...- +...               ..+++.......+.+..     .+++.+.+.|||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            589999999999999999975321 1111               11122222222222210     02447889999999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      |++.|......+++.+|++|+|||++++.+.+....|......        ++|++||+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~--------~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE--------RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc--------CCCEEEEEECCCcc
Confidence            9999999889999999999999999998877765555444333        38999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.50  E-value=3.7e-13  Score=122.28  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=107.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYICM  308 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~~~  308 (452)
                      ....|+++|++|||||||+|.++++........|.|..-....+.+   ++.   +.|+|.||          ++.+..+
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            3468999999999999999999997754444455554444444444   443   67889998          3344555


Q ss_pred             hhhhhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--
Q psy14768        309 SRVYYQN---SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--  383 (452)
Q Consensus       309 ~~~~i~~---ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--  383 (452)
                      ...|++.   -.++++++|+..+....|.+. ++-+..       .++|++||+||+|..............++.+..  
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em-~~~l~~-------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~  168 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDREM-IEFLLE-------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP  168 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHHHH-HHHHHH-------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence            5566654   468899999998877666533 222332       349999999999998632223333444443322  


Q ss_pred             --CE-EEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        384 --MS-WIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       384 --~~-~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                        .. ++.+|+.++.|++++...|.+.+..
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence              11 6789999999999999988887654

>KOG0072|consensus

Probab=99.50  E-value=1.3e-13  Score=117.09  Aligned_cols=160  Identities=20%  Similarity=0.262  Sum_probs=117.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .+.+++++|-.|+||++++-++--.+. +...|+++.+....       ..++..+++||..|+-..+..|+-||.+.|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v-------~yKNLk~~vwdLggqtSirPyWRcYy~dt~a   88 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETV-------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDA   88 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccc-------ccccccceeeEccCcccccHHHHHHhcccce
Confidence            457899999999999999998875554 35568888655443       2367889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH----HHHHHHcCCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI----EAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~----~~~~~~~~~~~~~evSAkt  393 (452)
                      +|+|+|.+|......... ++..+.+.    ...+..+++++||.|...+....|..    ..-.+..-+ .+|++||.+
T Consensus        89 vIyVVDssd~dris~a~~el~~mL~E~----eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~-~Iv~tSA~k  163 (182)
T KOG0072|consen   89 VIYVVDSSDRDRISIAGVELYSMLQEE----ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW-QIVKTSAVK  163 (182)
T ss_pred             EEEEEeccchhhhhhhHHHHHHHhccH----hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee-EEEeecccc
Confidence            999999999865544433 23333222    34567889999999986522222221    112222223 379999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy14768        394 HLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~  411 (452)
                      |.+++.+++|+.+.+..+
T Consensus       164 g~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  164 GEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccCCcHHHHHHHHHHhcc
Confidence            999999999999887643

>KOG1423|consensus

Probab=99.48  E-value=1.8e-13  Score=130.24  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=105.4

Q ss_pred             CCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc------chhhh-
Q psy14768        236 IQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ------DRYIC-  307 (452)
Q Consensus       236 ~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~------e~~~~-  307 (452)
                      +......|+++|.||||||||.|.+++.+.. .+....+++....-.+     .....+++|+||||.      +++.. 
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~-----ts~eTQlvf~DTPGlvs~~~~r~~~l~  142 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGII-----TSGETQLVFYDTPGLVSKKMHRRHHLM  142 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEE-----ecCceEEEEecCCcccccchhhhHHHH
Confidence            3445689999999999999999999996654 3333333333323233     235578999999993      22221 


Q ss_pred             -----hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------------Cc
Q psy14768        308 -----MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------------RQ  368 (452)
Q Consensus       308 -----~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------------~~  368 (452)
                           ....++.+||.+++|+|+++....-. ...+..+..+      .++|-|||.||.|...              .+
T Consensus       143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~  215 (379)
T KOG1423|consen  143 MSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGE  215 (379)
T ss_pred             HHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccc
Confidence                 12346889999999999997432111 2344455555      4589999999999753              11


Q ss_pred             ccHHHHHHHHHHcC----------------CCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        369 VEINEIEAVCHQYN----------------FMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       369 ~~~e~~~~~~~~~~----------------~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      .. ..-.++.+++.                |..+|.+||++|.||+++-+++..+...
T Consensus       216 l~-~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  216 LA-KLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             cc-hhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            11 11122333332                2336999999999999999999876543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.47  E-value=2.1e-13  Score=143.15  Aligned_cols=157  Identities=16%  Similarity=0.167  Sum_probs=122.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhh-
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVY-  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~-  312 (452)
                      ..+|+++|.||||||||.|++++.+..+.+-|+++.+-..-.+..   .+  .++.++|.||.-...      .....| 
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~---~~--~~i~ivDLPG~YSL~~~S~DE~Var~~l   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY---KG--HEIEIVDLPGTYSLTAYSEDEKVARDFL   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe---cC--ceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence            456999999999999999999998888888899998887777666   44  447788999953211      222334 


Q ss_pred             h-cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        313 Y-QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       313 i-~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      + .+.|++|-|+|+++-+  .++...++.++-.        +|++++.|++|..+++-..-+.+++.+.+|.+ .+++||
T Consensus        78 l~~~~D~ivnVvDAtnLe--RnLyltlQLlE~g--------~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-Vv~tvA  146 (653)
T COG0370          78 LEGKPDLIVNVVDATNLE--RNLYLTLQLLELG--------IPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-VVPTVA  146 (653)
T ss_pred             hcCCCCEEEEEcccchHH--HHHHHHHHHHHcC--------CCeEEEeccHhhHHhcCCcccHHHHHHHhCCC-EEEEEe
Confidence            3 3579999999999875  4444455555544        89999999999987555566788899999998 999999


Q ss_pred             CCCccHHHHHHHHHHHHHHhh
Q psy14768        392 KEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ++|.|+++++..+.+......
T Consensus       147 ~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         147 KRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             ecCCCHHHHHHHHHHhccccc
Confidence            999999999999987554444

>COG2262 HflX GTPases [General function prediction only]

Probab=99.47  E-value=4.9e-13  Score=132.80  Aligned_cols=159  Identities=13%  Similarity=0.111  Sum_probs=117.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc---------hhhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD---------RYICMS  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e---------~~~~~~  309 (452)
                      .-..|+++|..|+|||||+|++.+........-..+.|.....+.+   .+ ...+.+.||-|--         .|++..
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l---~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL---GD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe---CC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence            4578999999999999999999987777676777777888888777   33 4456777999932         233322


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                       .-...||+++.|+|++++...+.++.....+...    ....+|+|+|.||.|+.....   ....+.....  ..+++
T Consensus       267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~--~~v~i  336 (411)
T COG2262         267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADEIPIILVLNKIDLLEDEE---ILAELERGSP--NPVFI  336 (411)
T ss_pred             -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----CCCCCCEEEEEecccccCchh---hhhhhhhcCC--CeEEE
Confidence             2246899999999999997777776666666665    445699999999999875222   1112222222  37999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ||++|.|++.+++.|...+...
T Consensus       337 SA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         337 SAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             EeccCcCHHHHHHHHHHHhhhc
Confidence            9999999999999999888744

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.47  E-value=2.2e-13  Score=140.18  Aligned_cols=147  Identities=14%  Similarity=0.170  Sum_probs=98.6

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cccc--------------------------------cCCcceeeeEEEEEEeeec
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FLDN--------------------------------YKNTVGVDFSTKLLSHKKY  287 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~--------------------------------~~~t~~~d~~~~~i~~~~~  287 (452)
                      ++|+++|..++|||||+++|+... .+..                                ..-+++.+.....+     
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~-----   75 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF-----   75 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE-----
Confidence            478999999999999999997421 1111                                01122334333333     


Q ss_pred             CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-
Q psy14768        288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-  366 (452)
Q Consensus       288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-  366 (452)
                      ......+.||||||+++|...+...+..+|++|+|+|+.++..-+..+.|.......       ..++|||+||+|+.+ 
T Consensus        76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-------~~~iivviNK~D~~~~  148 (406)
T TIGR02034        76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-------IRHVVLAVNKMDLVDY  148 (406)
T ss_pred             ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-------CCcEEEEEEecccccc
Confidence            334567889999999999766667789999999999999876555444433222211       246899999999975 


Q ss_pred             Ccc----cHHHHHHHHHHcCC--CEEEEecCCCCccHHH
Q psy14768        367 RQV----EINEIEAVCHQYNF--MSWIEVSSKEHLMIED  399 (452)
Q Consensus       367 ~~~----~~e~~~~~~~~~~~--~~~~evSAktg~nv~~  399 (452)
                      ...    ..++...+...+++  .+++.+||++|.|+.+
T Consensus       149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            211    12233344455554  3589999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.46  E-value=4.3e-13  Score=139.20  Aligned_cols=157  Identities=14%  Similarity=0.129  Sum_probs=103.4

Q ss_pred             CCcccEEEeeecccCCcceeeecccc------c----------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQN------K----------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~------~----------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ...++|+++|..++|||||+++|.+-      .          ...+...+++.+.....+     .....++.|+||||
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-----~~~~~~i~~iDtPG  133 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY-----ETAKRHYAHVDCPG  133 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE-----cCCCeEEEEEECCC
Confidence            44688999999999999999998621      1          112233566666554443     34556788999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCCcccH----HHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDRQVEI----NEIEA  376 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~----e~~~~  376 (452)
                      +++|.......+..+|+++||+|++++..-++.+.+.. +..       .++| +|+|+||+|+.+.+...    +++.+
T Consensus       134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~-~~~-------~gip~iIvviNKiDlv~~~~~~~~i~~~i~~  205 (447)
T PLN03127        134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILL-ARQ-------VGVPSLVVFLNKVDVVDDEELLELVEMELRE  205 (447)
T ss_pred             ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH-HHH-------cCCCeEEEEEEeeccCCHHHHHHHHHHHHHH
Confidence            99887666666778999999999998765555444333 222       2378 57899999997511111    23444


Q ss_pred             HHHHcCC----CEEEEecCC---CCcc-------HHHHHHHHHHH
Q psy14768        377 VCHQYNF----MSWIEVSSK---EHLM-------IEDSMNFLVDR  407 (452)
Q Consensus       377 ~~~~~~~----~~~~evSAk---tg~n-------v~~lf~~i~~~  407 (452)
                      +...+++    .+++.+||.   +|.|       +.++++.+...
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            5554443    458888886   4555       55666655544

>PLN03126 Elongation factor Tu; Provisional

Probab=99.46  E-value=4.8e-13  Score=139.63  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccc------c----------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNK------F----------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~------~----------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                      ....++|+++|..++|||||+++|+...      .          ..+...+++.+.....+.     .+...+.|||||
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-----~~~~~i~liDtP  152 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-----TENRHYAHVDCP  152 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-----cCCcEEEEEECC
Confidence            3456889999999999999999998411      0          112223444444433333     345578899999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCC----cccHHHHH
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDR----QVEINEIE  375 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~----~~~~e~~~  375 (452)
                      |+++|-......+..+|++|+|+|+.++..-+..+.|......        ++| +|+++||+|+.+.    +...+++.
T Consensus       153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~  224 (478)
T PLN03126        153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--------GVPNMVVFLNKQDQVDDEELLELVELEVR  224 (478)
T ss_pred             CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--------CCCeEEEEEecccccCHHHHHHHHHHHHH
Confidence            9999987777778899999999999988665554444432222        377 7889999999751    11223556


Q ss_pred             HHHHHcCC----CEEEEecCCCCccH
Q psy14768        376 AVCHQYNF----MSWIEVSSKEHLMI  397 (452)
Q Consensus       376 ~~~~~~~~----~~~~evSAktg~nv  397 (452)
                      .++...++    .+|+.+||.++.|+
T Consensus       225 ~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        225 ELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHhcCCCcCcceEEEEEccccccc
Confidence            66666543    45899999998654

>PRK00049 elongation factor Tu; Reviewed

Probab=99.46  E-value=5.5e-13  Score=136.84  Aligned_cols=146  Identities=15%  Similarity=0.181  Sum_probs=99.8

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc----------------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF----------------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~----------------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ...++|+++|..++|||||+++|+....                ..+...+++.+.....  +   ......+.|+||||
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~---~~~~~~i~~iDtPG   84 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVE--Y---ETEKRHYAHVDCPG   84 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEE--E---cCCCeEEEEEECCC
Confidence            4468899999999999999999985210                1122345555554333  2   34556788999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE-EEEECCCCCCC-c---ccHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL-LLASKCDLPDR-Q---VEINEIEA  376 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii-lV~NK~Dl~~~-~---~~~e~~~~  376 (452)
                      +++|.......+..+|++++|+|+.++..-+..+.|.. +...       ++|++ +++||+|+.+. +   ...+++..
T Consensus        85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~-~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~  156 (396)
T PRK00049         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRE  156 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHH-HHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHHH
Confidence            98887666677899999999999998765555444433 3322       37875 68999999741 1   12234555


Q ss_pred             HHHHcCC----CEEEEecCCCCcc
Q psy14768        377 VCHQYNF----MSWIEVSSKEHLM  396 (452)
Q Consensus       377 ~~~~~~~----~~~~evSAktg~n  396 (452)
                      ++..+++    .+++.+||+++.+
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccC
Confidence            6665554    4689999999763

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.44  E-value=5.9e-13  Score=129.56  Aligned_cols=138  Identities=13%  Similarity=0.162  Sum_probs=90.0

Q ss_pred             cEEEeeecccCCcceeeeccccccc------------------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL------------------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~------------------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      +|+++|.+|+|||||+++++...-.                  .+...+++.+.....+.+     ..+++.+|||||+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liDTPG~~   75 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-----KDHRINIIDTPGHV   75 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-----CCEEEEEEECCCcH
Confidence            4899999999999999999731110                  111223444444444433     46788899999998


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHHHc
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCHQY  381 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~~~  381 (452)
                      .|...+..+++.+|++|+|+|+.++..-+....|.. +..       .++|+++|+||+|+.+ . ....+++++.....
T Consensus        76 df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~-~~~-------~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~  147 (270)
T cd01886          76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQ-ADR-------YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN  147 (270)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHH-HHH-------cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence            888888889999999999999998765554444433 222       2489999999999874 1 11223333333322


Q ss_pred             CCCEEEEecCC
Q psy14768        382 NFMSWIEVSSK  392 (452)
Q Consensus       382 ~~~~~~evSAk  392 (452)
                      .+..++.+||.
T Consensus       148 ~~~~~~Pisa~  158 (270)
T cd01886         148 PVPLQLPIGEE  158 (270)
T ss_pred             ceEEEeccccC
Confidence            22334666665

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.44  E-value=4.9e-13  Score=139.95  Aligned_cols=152  Identities=13%  Similarity=0.142  Sum_probs=99.6

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccc-ccccc-----------C---------------------CcceeeeEEEEEE
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNK-FLDNY-----------K---------------------NTVGVDFSTKLLS  283 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~-----------~---------------------~t~~~d~~~~~i~  283 (452)
                      ....++|+++|..++|||||+++|+... .+...           .                     .+++.+.....+ 
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-  102 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-  102 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe-
Confidence            3456899999999999999999998532 11110           0                     112233322222 


Q ss_pred             eeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        284 HKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       284 ~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                          .....++.||||||++.|...+...+..+|++|||+|+.++..-+..+.+... ...      ...++|||+||+|
T Consensus       103 ----~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~-~~l------g~~~iIvvvNKiD  171 (474)
T PRK05124        103 ----STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIA-TLL------GIKHLVVAVNKMD  171 (474)
T ss_pred             ----ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHH-HHh------CCCceEEEEEeec
Confidence                44556789999999998876666667999999999999887544443333222 211      1257899999999


Q ss_pred             CCC-CcccHH----HHHHHHHHcC---CCEEEEecCCCCccHHHH
Q psy14768        364 LPD-RQVEIN----EIEAVCHQYN---FMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       364 l~~-~~~~~e----~~~~~~~~~~---~~~~~evSAktg~nv~~l  400 (452)
                      +.+ .+...+    ++..+...++   ..+++.+||++|.|+.++
T Consensus       172 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            974 221122    2333344443   355899999999999865

>KOG0462|consensus

Probab=99.43  E-value=6.4e-13  Score=135.02  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=119.2

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cc--------------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FL--------------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~--------------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      -+++|+-.-.-|||||..+++... ++              .+..-+++....+..+.+  .+++.+.+.++||||+-.|
T Consensus        61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify--~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY--KDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE--EcCCceEEEeecCCCcccc
Confidence            356788888999999999998411 11              123345555444444444  3578899999999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCC
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~  383 (452)
                      +.-..+.+..||++|||+|++++.--|.+..++..++..        ..+|.|+||+|+..  .+....++.+++.....
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~--------L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~  210 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAG--------LAIIPVLNKIDLPSADPERVENQLFELFDIPPA  210 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcC--------CeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc
Confidence            988888899999999999999999888888888888877        88999999999975  11222233333333333


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                       ..+.+|||+|.|+.++|++|++.+-
T Consensus       211 -~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  211 -EVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             -ceEEEEeccCccHHHHHHHHHhhCC
Confidence             3799999999999999999988764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.43  E-value=1.3e-12  Score=126.15  Aligned_cols=167  Identities=16%  Similarity=0.174  Sum_probs=117.5

Q ss_pred             cccCCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--hhh
Q psy14768        230 YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--YIC  307 (452)
Q Consensus       230 ~~~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~  307 (452)
                      +..++..+.....|+|.|.||||||||++++.+........|.|+     +.+.+.+++.....+|++||||.-.  ...
T Consensus       158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-----K~i~vGhfe~~~~R~QvIDTPGlLDRPl~E  232 (346)
T COG1084         158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-----KGIHVGHFERGYLRIQVIDTPGLLDRPLEE  232 (346)
T ss_pred             HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-----cceeEeeeecCCceEEEecCCcccCCChHH
Confidence            566777777889999999999999999999998666555556554     4455555566677899999999421  111


Q ss_pred             ---h---hhhhhcC-CCEEEEEEeCCCh--hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH
Q psy14768        308 ---M---SRVYYQN-SDGCIIMFDLTNR--KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC  378 (452)
Q Consensus       308 ---~---~~~~i~~-ad~vIlV~D~t~~--~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~  378 (452)
                         +   ...+++. +++|+|+||.+..  -+.+....++.++...+      +.|+++|.||.|+.+ ....+++....
T Consensus       233 rN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~-~e~~~~~~~~~  305 (346)
T COG1084         233 RNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIAD-EEKLEEIEASV  305 (346)
T ss_pred             hcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccc-hhHHHHHHHHH
Confidence               1   1122333 6899999999864  56777777888888762      389999999999875 22334444445


Q ss_pred             HHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        379 HQYNFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       379 ~~~~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ..-+......+++..+.+++.+-..+....
T Consensus       306 ~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         306 LEEGGEEPLKISATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             HhhccccccceeeeehhhHHHHHHHHHHHh
Confidence            555555578888888888887666665553

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.43  E-value=7.2e-13  Score=115.25  Aligned_cols=136  Identities=24%  Similarity=0.293  Sum_probs=97.9

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----chhhhhhhhhhcCCC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----DRYICMSRVYYQNSD  317 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----e~~~~~~~~~i~~ad  317 (452)
                      ||.++|+.++|||||+++|.+....  +..|....+.               =.++||||-    ..|..-......+||
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~---------------~~~IDTPGEyiE~~~~y~aLi~ta~dad   65 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYY---------------DNTIDTPGEYIENPRFYHALIVTAQDAD   65 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEec---------------ccEEECChhheeCHHHHHHHHHHHhhCC
Confidence            7899999999999999999875542  2222221111               125799993    223322233456999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++++|.|++++.+.-.=     .+..      .-.+|+|=|+||+|+.......+..+++++..|+...|++|+.+|+||
T Consensus        66 ~V~ll~dat~~~~~~pP-----~fa~------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi  134 (143)
T PF10662_consen   66 VVLLLQDATEPRSVFPP-----GFAS------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGI  134 (143)
T ss_pred             EEEEEecCCCCCccCCc-----hhhc------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence            99999999987432111     1111      124899999999999854567788889999999998999999999999


Q ss_pred             HHHHHHHH
Q psy14768        398 EDSMNFLV  405 (452)
Q Consensus       398 ~~lf~~i~  405 (452)
                      ++|.+.|-
T Consensus       135 ~eL~~~L~  142 (143)
T PF10662_consen  135 EELKDYLE  142 (143)
T ss_pred             HHHHHHHh
Confidence            99998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=4.4e-12  Score=129.89  Aligned_cols=159  Identities=13%  Similarity=0.196  Sum_probs=124.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..-|+++|.-..|||||+..+-+.........+++..+....+..   +. ..-.+.|+||||++.|..|+.+-.+-+|+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~---~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPL---DVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEe---ccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            456889999999999999999988888888899999999888877   42 23467788999999999999998999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--------CEEEEec
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--------MSWIEVS  390 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--------~~~~evS  390 (452)
                      +|||+|++++.-=|.++    .+...    ...+.|++++.||+|..+  ...+.+..-..+.++        ..|+.+|
T Consensus        82 aILVVa~dDGv~pQTiE----AI~ha----k~a~vP~iVAiNKiDk~~--~np~~v~~el~~~gl~~E~~gg~v~~VpvS  151 (509)
T COG0532          82 AILVVAADDGVMPQTIE----AINHA----KAAGVPIVVAINKIDKPE--ANPDKVKQELQEYGLVPEEWGGDVIFVPVS  151 (509)
T ss_pred             EEEEEEccCCcchhHHH----HHHHH----HHCCCCEEEEEecccCCC--CCHHHHHHHHHHcCCCHhhcCCceEEEEee
Confidence            99999999975444432    23222    345699999999999985  223333333333333        3479999


Q ss_pred             CCCCccHHHHHHHHHHHHHHh
Q psy14768        391 SKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~~  411 (452)
                      |++|.|+.+|+..++-.....
T Consensus       152 A~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         152 AKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             ccCCCCHHHHHHHHHHHHHHH
Confidence            999999999999988776655

>cd04169 RF3 RF3 subfamily

Probab=99.41  E-value=1.4e-12  Score=126.86  Aligned_cols=114  Identities=11%  Similarity=0.189  Sum_probs=78.6

Q ss_pred             cEEEeeecccCCcceeeecccc-cccccc--------CCcc-----------eeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQN-KFLDNY--------KNTV-----------GVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~-~~~~~~--------~~t~-----------~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      +|+++|.+|+|||||+++++.. ..+...        ..++           +.++......+   ..+.+.+.+|||+|
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~---~~~~~~i~liDTPG   80 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF---EYRDCVINLLDTPG   80 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE---eeCCEEEEEEECCC
Confidence            5899999999999999999742 111110        0111           11222222233   55778899999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +.+|......+++.+|++|+|+|++++...+.. .++.....       .++|+++++||+|+..
T Consensus        81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~-~i~~~~~~-------~~~P~iivvNK~D~~~  137 (267)
T cd04169          81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTR-KLFEVCRL-------RGIPIITFINKLDREG  137 (267)
T ss_pred             chHHHHHHHHHHHHCCEEEEEEECCCCccHHHH-HHHHHHHh-------cCCCEEEEEECCccCC
Confidence            999887777788999999999999987543332 23332222       3589999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.41  E-value=6.9e-13  Score=144.01  Aligned_cols=149  Identities=15%  Similarity=0.175  Sum_probs=98.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-ccccc----------CCc----------------------ceeeeEEEEEEee
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNY----------KNT----------------------VGVDFSTKLLSHK  285 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~----------~~t----------------------~~~d~~~~~i~~~  285 (452)
                      ..++|+++|.+|+|||||+++|+... .+...          ..+                      ++.+.....+   
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~---   99 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF---   99 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE---
Confidence            35789999999999999999999632 22210          111                      2222222222   


Q ss_pred             ecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        286 KYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       286 ~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                        ......+.|+||||+++|...+...+..+|++|||+|++++..-+..+.+.. +...      ..+++|||+||+|+.
T Consensus       100 --~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~-~~~~------~~~~iivvvNK~D~~  170 (632)
T PRK05506        100 --ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFI-ASLL------GIRHVVLAVNKMDLV  170 (632)
T ss_pred             --ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHH-HHHh------CCCeEEEEEEecccc
Confidence              3345578899999999887666667899999999999988755444333322 2221      226789999999997


Q ss_pred             C-Ccc----cHHHHHHHHHHcCC--CEEEEecCCCCccHHH
Q psy14768        366 D-RQV----EINEIEAVCHQYNF--MSWIEVSSKEHLMIED  399 (452)
Q Consensus       366 ~-~~~----~~e~~~~~~~~~~~--~~~~evSAktg~nv~~  399 (452)
                      + .+.    ..+++.++...+++  .+++.+||++|.|+.+
T Consensus       171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            4 111    11233344556665  3489999999999974

>KOG1707|consensus

Probab=99.39  E-value=2.5e-13  Score=139.14  Aligned_cols=168  Identities=15%  Similarity=0.198  Sum_probs=122.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|+.|+|||||+-.++.+.|+....+-..  .......+   ....+...|+||...+.-+.-...-+++||
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadv---tPe~vpt~ivD~ss~~~~~~~l~~EirkA~   81 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADV---TPENVPTSIVDTSSDSDDRLCLRKEIRKAD   81 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCcc---CcCcCceEEEecccccchhHHHHHHHhhcC
Confidence            4568999999999999999999999888765433221  11111222   334556788999865443333356689999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHH-HHHHHHHcC-CCEEEEecCCC
Q psy14768        318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINE-IEAVCHQYN-FMSWIEVSSKE  393 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~-~~~~~~~~~-~~~~~evSAkt  393 (452)
                      ++++||+++++.|.+.+. .|+-.+++..+  ...++||||||||+|..+ ...+.+. ..-+...+. +...++|||++
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~  159 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT  159 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence            999999999999999996 59999988731  236899999999999987 2222222 344444432 33469999999


Q ss_pred             CccHHHHHHHHHHHHHHhh
Q psy14768        394 HLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~~  412 (452)
                      -.|+.++|..+.++++..-
T Consensus       160 ~~n~~e~fYyaqKaVihPt  178 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVIHPT  178 (625)
T ss_pred             hhhhHhhhhhhhheeeccC
Confidence            9999999999999888763

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.39  E-value=2.2e-12  Score=119.89  Aligned_cols=163  Identities=18%  Similarity=0.212  Sum_probs=97.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-----hhhhhhc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-----MSRVYYQ  314 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-----~~~~~i~  314 (452)
                      +++|+++|++|+|||||+|.+++..........++..-......... ......+.+|||+|......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            36899999999999999999998544322222222100000100000 11123688999999754321     2223367


Q ss_pred             CCCEEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc-----------ccHHHHHHHHH--
Q psy14768        315 NSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ-----------VEINEIEAVCH--  379 (452)
Q Consensus       315 ~ad~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~-----------~~~e~~~~~~~--  379 (452)
                      ++|++++|.|.  .  |... ..|+..+...       ++|+++|+||+|+.. ..           ...+++.+.+.  
T Consensus        80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  148 (197)
T cd04104          80 EYDFFIIISST--R--FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN  148 (197)
T ss_pred             CcCEEEEEeCC--C--CCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence            88999998542  2  3333 2345555443       489999999999853 11           01111222221  


Q ss_pred             --H--cCCCEEEEecCC--CCccHHHHHHHHHHHHHHhhhh
Q psy14768        380 --Q--YNFMSWIEVSSK--EHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       380 --~--~~~~~~~evSAk--tg~nv~~lf~~i~~~i~~~~~~  414 (452)
                        .  ....++|-+|+.  .+.++..+.+.++..+-+.++.
T Consensus       149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence              2  234568999998  5789999999999988876553

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.39  E-value=3.9e-12  Score=126.26  Aligned_cols=164  Identities=17%  Similarity=0.219  Sum_probs=99.3

Q ss_pred             EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee------------------ecCC-eeEEEEEEecCCc-
Q psy14768        243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK------------------KYGG-RPVKLQIWDIAGQ-  302 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~------------------~~~~-~~~~l~l~DtaG~-  302 (452)
                      |+++|.||||||||+|++++........|.++.+...-...+.                  ..++ ..+.+++|||||+ 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5799999999999999999876543333333322211111100                  0022 3478999999997 


Q ss_pred             ---chhhhhhhhh---hcCCCEEEEEEeCCCh-------------hhHHHHHHHHHHHHh--------------------
Q psy14768        303 ---DRYICMSRVY---YQNSDGCIIMFDLTNR-------------KSFESVVQWKHDLDS--------------------  343 (452)
Q Consensus       303 ---e~~~~~~~~~---i~~ad~vIlV~D~t~~-------------~S~~~~~~~~~~i~~--------------------  343 (452)
                         +++..+...+   +++||++++|+|++..             ...+++.....++..                    
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               5555555554   9999999999999731             011122111111100                    


Q ss_pred             ------------------------hh---h------------------hcCCCCCcEEEEEECCCCCCCcccHHHHHHHH
Q psy14768        344 ------------------------KC---I------------------LDNGAMLPCLLLASKCDLPDRQVEINEIEAVC  378 (452)
Q Consensus       344 ------------------------~~---~------------------~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~  378 (452)
                                              ..   .                  ......+|+|+|+||.|+.+..   +....+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHHHHH
Confidence                                    00   0                  0012358999999999985421   1222333


Q ss_pred             HHcCCCEEEEecCCCCccHHHHHH-HHHHHHH
Q psy14768        379 HQYNFMSWIEVSSKEHLMIEDSMN-FLVDRII  409 (452)
Q Consensus       379 ~~~~~~~~~evSAktg~nv~~lf~-~i~~~i~  409 (452)
                      ....+..++.+||+.+.++.++.+ .+++.+-
T Consensus       238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             hhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            444455689999999999999997 4776653

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1489|consensus

Probab=99.39  E-value=1.7e-12  Score=124.44  Aligned_cols=158  Identities=17%  Similarity=0.188  Sum_probs=112.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh----hhh---hhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC----MSR---VYY  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~----~~~---~~i  313 (452)
                      ..+.++|.||+|||||+|++...+--+...+.|+..-..-++.+   ++ ..++.+-|.||.-+-..    +-.   .-+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y---dd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHi  272 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY---DD-FSQITVADIPGIIEGAHMNKGLGYKFLRHI  272 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec---cc-cceeEeccCccccccccccCcccHHHHHHH
Confidence            56789999999999999999974433333343333222223333   32 23477889999643221    112   347


Q ss_pred             cCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        314 QNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      ++++..++|+|++.+   .-++.++.+..+++.+  .....++|.+||+||+|+.+.  ..+.+.++.+.+.....+.+|
T Consensus       273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y--ek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~~~V~pvs  348 (366)
T KOG1489|consen  273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELY--EKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQNPHVVPVS  348 (366)
T ss_pred             HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHH--hhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCCCcEEEee
Confidence            889999999999998   7788888877777766  223468999999999998642  233357788888766689999


Q ss_pred             CCCCccHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVD  406 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~  406 (452)
                      |++++++.+++..+.+
T Consensus       349 A~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLRE  364 (366)
T ss_pred             eccccchHHHHHHHhh
Confidence            9999999999987754

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.38  E-value=3.8e-12  Score=134.58  Aligned_cols=115  Identities=11%  Similarity=0.167  Sum_probs=78.7

Q ss_pred             cccEEEeeecccCCcceeeecccc-cccc----------------ccCC---cceeeeEEEEEEeeecCCeeEEEEEEec
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN-KFLD----------------NYKN---TVGVDFSTKLLSHKKYGGRPVKLQIWDI  299 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~-~~~~----------------~~~~---t~~~d~~~~~i~~~~~~~~~~~l~l~Dt  299 (452)
                      .-+|+|+|.+++|||||+++++.. ..+.                ++.+   ..+..+......+   ..+.+.+.+|||
T Consensus        10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~---~~~~~~inliDT   86 (526)
T PRK00741         10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF---PYRDCLINLLDT   86 (526)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE---EECCEEEEEEEC
Confidence            458999999999999999999731 1110                0000   0122222222233   446688999999


Q ss_pred             CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       300 aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      ||+..|......+++.+|++|+|+|++++...+....| .....       .++|+++++||+|+.
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~-~~~~~-------~~iPiiv~iNK~D~~  144 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLM-EVCRL-------RDTPIFTFINKLDRD  144 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCccc
Confidence            99999988777889999999999999987544433333 22222       359999999999974

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.37  E-value=3.2e-12  Score=124.56  Aligned_cols=143  Identities=15%  Similarity=0.201  Sum_probs=92.4

Q ss_pred             cEEEeeecccCCcceeeecccccccccc-----CC-------------cceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNY-----KN-------------TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~-----~~-------------t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      +|+++|.+|+|||||+++++........     ..             +.+.......+     ....+.+.+|||+|+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~-----~~~~~~i~liDtPG~~   75 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL-----EWKGHKINLIDTPGYA   75 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE-----EECCEEEEEEECcCHH
Confidence            4789999999999999998742211100     00             11111111222     3345778999999998


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF  383 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~  383 (452)
                      .|...+..++..+|++|+|+|++++...+....|.. +..       .++|+++|+||+|+... ...+....+.+.++.
T Consensus        76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~-~~~-------~~~p~iivvNK~D~~~~-~~~~~~~~l~~~~~~  146 (268)
T cd04170          76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEF-ADE-------AGIPRIIFINKMDRERA-DFDKTLAALQEAFGR  146 (268)
T ss_pred             HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHH-HHH-------cCCCEEEEEECCccCCC-CHHHHHHHHHHHhCC
Confidence            888778888999999999999998876665555543 222       24899999999998742 223445555555555


Q ss_pred             CEE-EEecCCCCccHH
Q psy14768        384 MSW-IEVSSKEHLMIE  398 (452)
Q Consensus       384 ~~~-~evSAktg~nv~  398 (452)
                      ..+ +.+...++.++.
T Consensus       147 ~~~~~~ip~~~~~~~~  162 (268)
T cd04170         147 PVVPLQLPIGEGDDFK  162 (268)
T ss_pred             CeEEEEecccCCCcee
Confidence            312 344455544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.37  E-value=1.1e-12  Score=136.17  Aligned_cols=149  Identities=12%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKK  286 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~  286 (452)
                      ...++|+++|..++|||||+.+|+...-                               ..+...+++.+.....     
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~-----   79 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK-----   79 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE-----
Confidence            4467899999999999999988873110                               0111123333333222     


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhhhhcCCCCC-cEEEE
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFE-------SVVQWKHDLDSKCILDNGAML-PCLLL  358 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~-------~~~~~~~~i~~~~~~~~~~~~-piilV  358 (452)
                      +......+.|+||||+++|...+...+..+|++|||+|++++ .|+       .....+..+..       .++ ++|||
T Consensus        80 ~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~-------~gi~~iIV~  151 (447)
T PLN00043         80 FETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT-------LGVKQMICC  151 (447)
T ss_pred             ecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH-------cCCCcEEEE
Confidence            255667889999999999998888889999999999999974 232       22222222222       235 57889


Q ss_pred             EECCCCCCC-------cccHHHHHHHHHHcCC----CEEEEecCCCCccHHH
Q psy14768        359 ASKCDLPDR-------QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIED  399 (452)
Q Consensus       359 ~NK~Dl~~~-------~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~  399 (452)
                      +||.|+.+.       ....++++.++.+.++    .+|+++||++|+|+.+
T Consensus       152 vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        152 CNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             EEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            999998631       1224567777777774    4589999999999854

>PRK13351 elongation factor G; Reviewed

Probab=99.37  E-value=3.3e-12  Score=140.10  Aligned_cols=114  Identities=14%  Similarity=0.204  Sum_probs=83.0

Q ss_pred             cccEEEeeecccCCcceeeecccccc-------------ccccC-----CcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-------------LDNYK-----NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-------------~~~~~-----~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ..+|+|+|..++|||||+++|+...-             ..++.     .+++.......+     ......+.+|||+|
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-----~~~~~~i~liDtPG   82 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-----DWDNHRINLIDTPG   82 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-----EECCEEEEEEECCC
Confidence            46899999999999999999974211             00000     111122222222     33567899999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +..|...+..+++.+|++|+|+|++++..++....|.....        .++|+++|+||+|+..
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--------~~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--------YGIPRLIFINKMDRVG  139 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--------cCCCEEEEEECCCCCC
Confidence            99998888899999999999999999888877666644222        2489999999999863

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.35  E-value=3.4e-12  Score=132.72  Aligned_cols=149  Identities=11%  Similarity=0.087  Sum_probs=100.2

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKK  286 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~  286 (452)
                      ...++|+++|..++|||||+.+|+...-                               ..+...+++.+.....+    
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~----   80 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF----   80 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE----
Confidence            4567899999999999999998874110                               01112233444433322    


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh-------HHHHHHHHHHHHhhhhhcCCCCCc-EEEE
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS-------FESVVQWKHDLDSKCILDNGAMLP-CLLL  358 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S-------~~~~~~~~~~i~~~~~~~~~~~~p-iilV  358 (452)
                       ......+.|+||||+++|...+...+..+|++|||+|++++..       -+..+.|......        ++| +|++
T Consensus        81 -~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--------gi~~iiv~  151 (446)
T PTZ00141         81 -ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--------GVKQMIVC  151 (446)
T ss_pred             -ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--------CCCeEEEE
Confidence             4566788899999999998877888899999999999997641       1333334332222        355 7899


Q ss_pred             EECCCCC--C-C----cccHHHHHHHHHHcCC----CEEEEecCCCCccHHH
Q psy14768        359 ASKCDLP--D-R----QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIED  399 (452)
Q Consensus       359 ~NK~Dl~--~-~----~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~  399 (452)
                      +||+|..  + .    ....+++.+++...++    .+|+.+||.+|+|+.+
T Consensus       152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            9999943  2 1    2223445555555555    4589999999999864

>cd01850 CDC_Septin CDC/Septin

Probab=99.33  E-value=7e-12  Score=122.45  Aligned_cols=139  Identities=15%  Similarity=0.231  Sum_probs=90.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccc----------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDN----------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----  305 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~----------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----  305 (452)
                      .++|+++|.+|+|||||+|++++..+...          ...|++.+.....+..   ++..+.+.+|||+|...+    
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~---~g~~~~l~iiDTpGfgd~~~~~   80 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE---NGVKLKLTVIDTPGFGDNINNS   80 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE---CCEEEEEEEEecCCccccccch
Confidence            47899999999999999999998766543          3445555665556655   777889999999993221    


Q ss_pred             --------------h--------hhhhhhhc--CCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768        306 --------------I--------CMSRVYYQ--NSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS  360 (452)
Q Consensus       306 --------------~--------~~~~~~i~--~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~N  360 (452)
                                    .        ..+...+.  ++|+++++++.+. ..+-.+++ .+..+..        .+|+++|+|
T Consensus        81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~--------~v~vi~Vin  151 (276)
T cd01850          81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK--------RVNIIPVIA  151 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc--------cCCEEEEEE
Confidence                          0        11112233  4678888888764 22222222 2222322        389999999


Q ss_pred             CCCCCC---CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        361 KCDLPD---RQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       361 K~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      |+|+..   .....+.+.+.+...++. +|....
T Consensus       152 K~D~l~~~e~~~~k~~i~~~l~~~~i~-~~~~~~  184 (276)
T cd01850         152 KADTLTPEELKEFKQRIMEDIEEHNIK-IYKFPE  184 (276)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHHcCCc-eECCCC
Confidence            999965   233455677777777876 555444

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=1.4e-11  Score=123.59  Aligned_cols=159  Identities=16%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             cEEEeeecccCCcceeeeccccc---------------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK---------------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~---------------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~  306 (452)
                      +.+|+-.-..|||||..|++...               ...+...+++.-.....+.+..-+++.+.++|+||||+-.|.
T Consensus        11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs   90 (603)
T COG0481          11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   90 (603)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence            35577777889999999998421               112234466666666666665557788999999999998887


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC--
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM--  384 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~--  384 (452)
                      --..+.+..|.++|||+|++++..-|.+...+..+++.        .-+|-|+||+||.. .......+++-.-+|+.  
T Consensus        91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~--------LeIiPViNKIDLP~-Adpervk~eIe~~iGid~~  161 (603)
T COG0481          91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN--------LEIIPVLNKIDLPA-ADPERVKQEIEDIIGIDAS  161 (603)
T ss_pred             EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC--------cEEEEeeecccCCC-CCHHHHHHHHHHHhCCCcc
Confidence            66677889999999999999999999998888888877        78999999999975 11222334444455553  


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ..+.+|||+|.||++++++|++.+-
T Consensus       162 dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         162 DAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             hheeEecccCCCHHHHHHHHHhhCC
Confidence            3589999999999999999988764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.32  E-value=4.6e-12  Score=138.81  Aligned_cols=140  Identities=11%  Similarity=0.199  Sum_probs=96.4

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cc---c--------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FL---D--------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~---~--------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      -+|+|+|.+|+|||||+++|+... .+   .              +...+++.+.....+.+     ....+.||||+|+
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-----~~~~i~liDTPG~   85 (689)
T TIGR00484        11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-----KGHRINIIDTPGH   85 (689)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-----CCeEEEEEECCCC
Confidence            479999999999999999997411 11   0              01234455555555544     4578899999999


Q ss_pred             chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC
Q psy14768        303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN  382 (452)
Q Consensus       303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~  382 (452)
                      .+|...+..+++.+|++|+|+|++++...+....|.. +..       .++|++||+||+|+.... ..+...++...++
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~-------~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~  156 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ-ANR-------YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG  156 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHH-HHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence            9888777888999999999999999877776655543 222       248999999999997511 2333445555554


Q ss_pred             CCE---EEEecCCCC
Q psy14768        383 FMS---WIEVSSKEH  394 (452)
Q Consensus       383 ~~~---~~evSAktg  394 (452)
                      ...   .+.+||..+
T Consensus       157 ~~~~~~~ipis~~~~  171 (689)
T TIGR00484       157 ANAVPIQLPIGAEDN  171 (689)
T ss_pred             CCceeEEeccccCCC
Confidence            432   355555544

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12739 elongation factor G; Reviewed

Probab=99.31  E-value=1.3e-11  Score=135.22  Aligned_cols=114  Identities=17%  Similarity=0.225  Sum_probs=85.4

Q ss_pred             cccEEEeeecccCCcceeeecccc-----cc--c-----------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN-----KF--L-----------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~-----~~--~-----------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ..+|+|+|.+|+|||||+++|+..     +.  +           .+...+++.+.....+.+     ...++.||||||
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-----~~~~i~liDTPG   82 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-----KGHRINIIDTPG   82 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-----CCEEEEEEcCCC
Confidence            357999999999999999999742     11  0           012345555555555554     456788999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +..|...+..+++.+|++|+|+|+.++..-++...|......        ++|+|+++||||+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--------~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--------GVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--------CCCEEEEEECCCCCC
Confidence            988887788889999999999999998776666555543333        389999999999863

>TIGR00503 prfC peptide chain release factor 3

Probab=99.29  E-value=2.9e-11  Score=127.88  Aligned_cols=116  Identities=13%  Similarity=0.208  Sum_probs=78.9

Q ss_pred             CcccEEEeeecccCCcceeeeccc-cccccc----------------cC---CcceeeeEEEEEEeeecCCeeEEEEEEe
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ-NKFLDN----------------YK---NTVGVDFSTKLLSHKKYGGRPVKLQIWD  298 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~-~~~~~~----------------~~---~t~~~d~~~~~i~~~~~~~~~~~l~l~D  298 (452)
                      ...+|+|+|.+++|||||+++++. ...+..                +.   ...+..+......+   +.+.+.+.+||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~---~~~~~~inliD   86 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF---PYRDCLVNLLD   86 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE---eeCCeEEEEEE
Confidence            346899999999999999999863 111110                00   01122233333333   55678899999


Q ss_pred             cCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       299 taG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      |+|+..|......+++.+|++|+|+|+++...-+. +.++.....       .++|+++|+||+|+.
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~~-------~~~PiivviNKiD~~  145 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT-RKLMEVTRL-------RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccc
Confidence            99999888767778999999999999998643222 233333322       358999999999973

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.29  E-value=1.6e-11  Score=116.18  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=101.9

Q ss_pred             cEEEeeecccCCcceeeeccccccccc---cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-----hhhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDN---YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-----MSRVYY  313 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~---~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-----~~~~~i  313 (452)
                      ||+++|+.++||||+.+.+..+....+   ..+|+.  .....+.    ....+.+.+||++||..+-.     .+...+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~----~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVR----FLSFLPLNIWDCPGQDDFMENYFNSQREEIF   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEE----CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEe----cCCCcEEEEEEcCCccccccccccccHHHHH
Confidence            689999999999998877765432211   123333  3333332    23456899999999975433     456789


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---Ccc----cHHHHHHHHHHcC--CC
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQV----EINEIEAVCHQYN--FM  384 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~----~~e~~~~~~~~~~--~~  384 (452)
                      ++++++|+|+|+....-.+++..+...+....  ...+++.+-++++|+|+..   +..    ..+.+.+.+...+  ..
T Consensus        75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~--~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~  152 (232)
T PF04670_consen   75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR--QYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDI  152 (232)
T ss_dssp             CTESEEEEEEETT-STCHHHHHHHHHHHHHHH--HHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred             hccCEEEEEEEcccccHHHHHHHHHHHHHHHH--HhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccce
Confidence            99999999999996666677766666555442  2357889999999999975   222    2223344444445  13


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      .|+.||-.+ +.+.++|..+++.++-.
T Consensus       153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  153 TFFLTSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred             EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence            367777775 68999999999887744

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.29  E-value=1.5e-11  Score=103.98  Aligned_cols=106  Identities=19%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             cEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh---h------hhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY---I------CMSRV  311 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~---~------~~~~~  311 (452)
                      +|+++|.+|+|||||+|.|++.. ......+..+.......+.+   ++.  .+.|+||+|...-   .      .....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~---~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~   75 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY---NNK--KFILVDTPGINDGESQDNDGKEIRKFLE   75 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE---TTE--EEEEEESSSCSSSSHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee---cee--eEEEEeCCCCcccchhhHHHHHHHHHHH
Confidence            58999999999999999999853 33444455555554444444   444  4568999996321   1      11223


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                      .+..+|++++|+|+++... +....++..++.        ++|+++|+||
T Consensus        76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~~--------~~~~i~v~NK  116 (116)
T PF01926_consen   76 QISKSDLIIYVVDASNPIT-EDDKNILRELKN--------KKPIILVLNK  116 (116)
T ss_dssp             HHCTESEEEEEEETTSHSH-HHHHHHHHHHHT--------TSEEEEEEES
T ss_pred             HHHHCCEEEEEEECCCCCC-HHHHHHHHHHhc--------CCCEEEEEcC
Confidence            4589999999999887433 222333344433        4999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.29  E-value=1.8e-11  Score=118.86  Aligned_cols=167  Identities=13%  Similarity=0.080  Sum_probs=112.4

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hhh---hhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CMS---RVYY  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~~---~~~i  313 (452)
                      ..|.++|.||+|||||++.+..-+--....+.|+..-.--.+.+    .....|.+-|.||.-+-.    -+-   -.-+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~----~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI  235 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV----DGGESFVVADIPGLIEGASEGVGLGLRFLRHI  235 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe----cCCCcEEEecCcccccccccCCCccHHHHHHH
Confidence            56789999999999999999974333222343333222212222    122346677999953211    111   2347


Q ss_pred             cCCCEEEEEEeCCChhh---HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        314 QNSDGCIIMFDLTNRKS---FESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S---~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      +++.+++.|+|++....   .++......+++.+  .....++|.+||+||+|+.. .+...+..+.+.+..++..++++
T Consensus       236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I  313 (369)
T COG0536         236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI  313 (369)
T ss_pred             HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence            78999999999986653   67777777777776  22456899999999999654 33334444555555565534449


Q ss_pred             cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ||.++++++++...+.+.+.+...
T Consensus       314 Sa~t~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         314 SALTREGLDELLRALAELLEETKA  337 (369)
T ss_pred             ehhcccCHHHHHHHHHHHHHHhhh
Confidence            999999999999999999888764

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.28  E-value=1.5e-11  Score=127.67  Aligned_cols=164  Identities=15%  Similarity=0.198  Sum_probs=105.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEE------------eeecCC-------------
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLS------------HKKYGG-------------  289 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~------------~~~~~~-------------  289 (452)
                      ...+.|+++|.-..|||||+..|.+   .++..+...+++.+.......            +..+..             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568899999999999999999986   233333333333322211110            000000             


Q ss_pred             ---eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        290 ---RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       290 ---~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                         ....+.|+||||++.|-..+...+..+|+++||+|+.++ ..-+..+.+. .+...      .-.++|||+||+|+.
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l------gi~~iIVvlNKiDlv  184 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM------KLKHIIILQNKIDLV  184 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc------CCCcEEEEEeccccc
Confidence               023678999999999987777778899999999999975 3333333332 22222      125789999999997


Q ss_pred             CC---cccHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        366 DR---QVEINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       366 ~~---~~~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      +.   ....+++.++....  ...+++.+||++|.|+++|++.|...+
T Consensus       185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            51   12233444444332  234589999999999999999888644

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.28  E-value=3.1e-11  Score=123.34  Aligned_cols=86  Identities=15%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee------e------------cC-CeeEEEEEEecCC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK------K------------YG-GRPVKLQIWDIAG  301 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~------~------------~~-~~~~~l~l~DtaG  301 (452)
                      ++|+++|.||||||||+|++.+..+.....+.++.+...-...+.      .            .+ .....+++|||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999866554333433332222111100      0            01 2336789999999


Q ss_pred             c----chhhhhhhhh---hcCCCEEEEEEeCC
Q psy14768        302 Q----DRYICMSRVY---YQNSDGCIIMFDLT  326 (452)
Q Consensus       302 ~----e~~~~~~~~~---i~~ad~vIlV~D~t  326 (452)
                      .    .+...+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    3344444455   89999999999997

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.27  E-value=3.1e-11  Score=116.37  Aligned_cols=159  Identities=17%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh---h----hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY---I----CMSRVY  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~---~----~~~~~~  312 (452)
                      ...++++|.|+||||||++++.+-.......+.++.....-.+     ..+..++||+|+||.-.-   .    ...-..
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l-----~Y~ga~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML-----EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE-----eecCceEEEEcCcccccCcccCCCCcceeeee
Confidence            4789999999999999999999866555554555544444444     346678899999985321   1    122346


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhh-----------------------------------------------
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKC-----------------------------------------------  345 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~-----------------------------------------------  345 (452)
                      +++||.+|+|+|+....+.  ++....+++..-                                               
T Consensus       138 ~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n  215 (365)
T COG1163         138 ARNADLIIIVLDVFEDPHH--RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN  215 (365)
T ss_pred             eccCCEEEEEEecCCChhH--HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence            8999999999999865431  212222222211                                               


Q ss_pred             -----------------hhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        346 -----------------ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       346 -----------------~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                                       ......-+|.++|.||.|+..    .++...+.+..   ..+++||+.+.|++++.+.+.+.+
T Consensus       216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----LEELERLARKP---NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC----HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhh
Confidence                             011234689999999999874    55566666665   389999999999999999998877


Q ss_pred             HHhh
Q psy14768        409 ICSK  412 (452)
Q Consensus       409 ~~~~  412 (452)
                      .-.+
T Consensus       289 ~liR  292 (365)
T COG1163         289 GLIR  292 (365)
T ss_pred             CeEE
Confidence            6544

>KOG1145|consensus

Probab=99.27  E-value=8.3e-11  Score=119.81  Aligned_cols=158  Identities=11%  Similarity=0.119  Sum_probs=122.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ..+.-|.|+|.-.-|||||+..|-+..+......+++..+....+.++  ++  -.+.|.||||+..|..|+.+-..-+|
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p--~G--~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP--SG--KSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC--CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence            345778999999999999999998888888888899998888888874  44  45667799999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-------HHcCC-CEEEEe
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-------HQYNF-MSWIEV  389 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-------~~~~~-~~~~ev  389 (452)
                      +++||+.+.|+.--|.+    +.|...    ...+.|+||++||+|..+  ...+.+.+-+       +.+|. .+.+.+
T Consensus       227 IvVLVVAadDGVmpQT~----EaIkhA----k~A~VpiVvAinKiDkp~--a~pekv~~eL~~~gi~~E~~GGdVQvipi  296 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQTL----EAIKHA----KSANVPIVVAINKIDKPG--ANPEKVKRELLSQGIVVEDLGGDVQVIPI  296 (683)
T ss_pred             EEEEEEEccCCccHhHH----HHHHHH----HhcCCCEEEEEeccCCCC--CCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence            99999999997544443    334444    456799999999999875  2333333322       23332 356999


Q ss_pred             cCCCCccHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~  409 (452)
                      ||++|+|++.|-+.++-...
T Consensus       297 SAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  297 SALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             ecccCCChHHHHHHHHHHHH
Confidence            99999999999888776554

>PRK12740 elongation factor G; Reviewed

Probab=99.26  E-value=3e-11  Score=132.33  Aligned_cols=108  Identities=13%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             eeecccCCcceeeecccccc-cc-----------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh
Q psy14768        246 TGDSTVGKTSYVQGFVQNKF-LD-----------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC  307 (452)
Q Consensus       246 vG~~nvGKSSLin~l~~~~~-~~-----------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~  307 (452)
                      +|.+|+|||||+++|+...- +.                 +...+++.+.....+.+     ..+.+.+|||||+..|..
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-----~~~~i~liDtPG~~~~~~   75 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-----KGHKINLIDTPGHVDFTG   75 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-----CCEEEEEEECCCcHHHHH
Confidence            68999999999999964211 00                 01123333333334333     557899999999998887


Q ss_pred             hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      .+..++..+|++|+|+|+++....+....|.....        .++|+++|+||+|+..
T Consensus        76 ~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--------~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         76 EVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--------YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence            77888999999999999999887776665544332        2489999999999863

>PRK00007 elongation factor G; Reviewed

Probab=99.23  E-value=4.6e-11  Score=130.92  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=100.6

Q ss_pred             ccEEEeeecccCCcceeeeccc--cc--cc---c-----------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ--NK--FL---D-----------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~--~~--~~---~-----------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      .+|+|+|.+|+|||||+++|+.  +.  ..   .           +...+++.+.....+.+     ....+.|+||||+
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-----~~~~~~liDTPG~   85 (693)
T PRK00007         11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-----KDHRINIIDTPGH   85 (693)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-----CCeEEEEEeCCCc
Confidence            5899999999999999999973  11  10   0           12345555555555555     4567889999999


Q ss_pred             chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC
Q psy14768        303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN  382 (452)
Q Consensus       303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~  382 (452)
                      ..|.......+..+|++|+|+|+.++...++...|.......        +|+|+++||||+.+.. ..+..+++.+.++
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~--------~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~  156 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK--------VPRIAFVNKMDRTGAD-FYRVVEQIKDRLG  156 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC--------CCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence            888766677889999999999999988888877776655544        8999999999997522 3344555666665


Q ss_pred             CC---EEEEecCCCC
Q psy14768        383 FM---SWIEVSSKEH  394 (452)
Q Consensus       383 ~~---~~~evSAktg  394 (452)
                      ..   ..+.+||..+
T Consensus       157 ~~~~~~~ipisa~~~  171 (693)
T PRK00007        157 ANPVPIQLPIGAEDD  171 (693)
T ss_pred             CCeeeEEecCccCCc
Confidence            52   2356676665

>KOG1490|consensus

Probab=99.21  E-value=6.1e-11  Score=119.67  Aligned_cols=178  Identities=13%  Similarity=0.117  Sum_probs=124.9

Q ss_pred             cccCCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----
Q psy14768        230 YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----  305 (452)
Q Consensus       230 ~~~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----  305 (452)
                      ...++......-.++++|.||||||||+|.+......+.+.+.++....     +.+++.+-..++++||||.-..    
T Consensus       158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~-----vGH~dykYlrwQViDTPGILD~plEd  232 (620)
T KOG1490|consen  158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL-----VGHLDYKYLRWQVIDTPGILDRPEED  232 (620)
T ss_pred             HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhh-----hhhhhhheeeeeecCCccccCcchhh
Confidence            5666677778889999999999999999999887776666666654333     3333556678889999995321    


Q ss_pred             hhhh--h--hhhcC-CCEEEEEEeCCCh--hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc---cHHHH
Q psy14768        306 ICMS--R--VYYQN-SDGCIIMFDLTNR--KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV---EINEI  374 (452)
Q Consensus       306 ~~~~--~--~~i~~-ad~vIlV~D~t~~--~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~---~~e~~  374 (452)
                      +...  .  .++.. --+|+++.|+++.  .|..+...+++.|+..     ..++|.|+|+||+|+.. ...   ..+.+
T Consensus       233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-----FaNK~~IlvlNK~D~m~~edL~~~~~~ll  307 (620)
T KOG1490|consen  233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-----FANKVTILVLNKIDAMRPEDLDQKNQELL  307 (620)
T ss_pred             hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-----hcCCceEEEeecccccCccccCHHHHHHH
Confidence            1111  1  11211 2467888999864  5667766777778776     47899999999999976 222   22223


Q ss_pred             HHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhhhHHH
Q psy14768        375 EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA  418 (452)
Q Consensus       375 ~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~~~~~  418 (452)
                      ..+...-++ +++++|+.+..||..+-..++..++..+....-.
T Consensus       308 ~~~~~~~~v-~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klk  350 (620)
T KOG1490|consen  308 QTIIDDGNV-KVVQTSCVQEEGVMDVRTTACEALLAARVEQKLK  350 (620)
T ss_pred             HHHHhccCc-eEEEecccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence            333333334 4999999999999999999999999887755433

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.21  E-value=1.4e-10  Score=129.81  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=102.9

Q ss_pred             cCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC--------ee-----EEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        251 VGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG--------RP-----VKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       251 vGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~--------~~-----~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ++||||+.++.+.........+++.++....+.......        ..     -.+.||||||++.|..++...+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            469999999998888888888999888877776521000        00     12789999999999988888889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc----------------HHHHH----H
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE----------------INEIE----A  376 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~----------------~e~~~----~  376 (452)
                      ++|+|+|++++..-+..+.+ ..+..       .++|+++|+||+|+.. ....                .++..    +
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I-~~lk~-------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI-NILRQ-------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH-HHHHH-------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999985333332221 22222       2489999999999964 1100                01110    1


Q ss_pred             H---HHHc--------------CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        377 V---CHQY--------------NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       377 ~---~~~~--------------~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      +   +.+.              +..+++.|||++|+||++++..+....
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            1   1122              234689999999999999998776543

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.21  E-value=2.5e-10  Score=105.90  Aligned_cols=161  Identities=7%  Similarity=0.085  Sum_probs=100.4

Q ss_pred             ccEEEeeecccCCcceeeecccccccccc--CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhh-
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNY--KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMS-  309 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~--~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~-  309 (452)
                      .+|+++|.+|+|||||+|.+++.......  .++.+.+.......+   +  ...+.++||||.....        .+. 
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~---~--~~~i~viDTPG~~d~~~~~~~~~~~i~~   75 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW---D--GRRVNVIDTPGLFDTSVSPEQLSKEIVR   75 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE---C--CeEEEEEECcCCCCccCChHHHHHHHHH
Confidence            36899999999999999999986543222  223444443333333   3  3468889999964321        111 


Q ss_pred             --hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc-------ccHHHHHHHHHH
Q psy14768        310 --RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ-------VEINEIEAVCHQ  380 (452)
Q Consensus       310 --~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~-------~~~e~~~~~~~~  380 (452)
                        .......|++|+|+|+.+ .+.++. ..+..+...++  ...-.++++|+|++|.....       ......+.+.+.
T Consensus        76 ~~~~~~~g~~~illVi~~~~-~t~~d~-~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~  151 (196)
T cd01852          76 CLSLSAPGPHAFLLVVPLGR-FTEEEE-QAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK  151 (196)
T ss_pred             HHHhcCCCCEEEEEEEECCC-cCHHHH-HHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence              112467899999999987 444433 23344433321  11225789999999976411       112456667777


Q ss_pred             cCCCEEEEec-----CCCCccHHHHHHHHHHHHHHh
Q psy14768        381 YNFMSWIEVS-----SKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       381 ~~~~~~~evS-----Aktg~nv~~lf~~i~~~i~~~  411 (452)
                      .+.. |+..+     +..+.++.+|++.+.+.+.+.
T Consensus       152 c~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         152 CGGR-YVAFNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             hCCe-EEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            6655 43333     556788999999988887753

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG0084|consensus

Probab=99.18  E-value=2.8e-11  Score=108.82  Aligned_cols=48  Identities=38%  Similarity=0.716  Sum_probs=44.1

Q ss_pred             CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ...+++|||+||||+|||||||+.||....|...|..|||+||..+.+
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~   51 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTV   51 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEe
Confidence            456889999999999999999999999999999999999999987664

>PRK09866 hypothetical protein; Provisional

Probab=99.18  E-value=5.6e-10  Score=117.27  Aligned_cols=111  Identities=18%  Similarity=0.221  Sum_probs=77.6

Q ss_pred             eEEEEEEecCCcch-----hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        291 PVKLQIWDIAGQDR-----YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       291 ~~~l~l~DtaG~e~-----~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      ..+++|+||||...     ....+...+..+|+|++|+|++...+..+.. ....+...     ....|+++|+||+|+.
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee-Ilk~Lkk~-----~K~~PVILVVNKIDl~  302 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEE-VREAILAV-----GQSVPLYVLVNKFDQQ  302 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH-HHHHHHhc-----CCCCCEEEEEEcccCC
Confidence            35688999999753     2223445799999999999999876666543 33444433     1235999999999986


Q ss_pred             C-CcccHHHHHHHHHHc------CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        366 D-RQVEINEIEAVCHQY------NFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       366 ~-~~~~~e~~~~~~~~~------~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      + .....+.+..+....      .+..+|.|||++|.|++++++.+...
T Consensus       303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            4 222244555543321      34568999999999999999998873

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.13  E-value=1.1e-10  Score=110.64  Aligned_cols=165  Identities=18%  Similarity=0.254  Sum_probs=110.0

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-------hhhhh
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-------YICMS  309 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-------~~~~~  309 (452)
                      ...+++|+++|..|+|||||+|+++.....+-..-+.+.+........  +++  -.+.||||+|.+.       |+...
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~--~~~--~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS--YDG--ENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh--ccc--cceEEecCCCcccchhhhHHHHHHH
Confidence            556789999999999999999999964433222222222232222221  133  4588999999643       56666


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHH
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINE  373 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~  373 (452)
                      ..++.+.|.+++++|+.++.=--+...|.+.+...      .+.++++++|..|...                ++...+.
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~------~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k  185 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG------LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK  185 (296)
T ss_pred             HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc------cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence            77889999999999999875444444555555544      3489999999999743                1112222


Q ss_pred             HHHHHHHc-CCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        374 IEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       374 ~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ++.+.+.+ ...+.+++++..+.|++++...++..+-..
T Consensus       186 ~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         186 AEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            22222222 244679999999999999999998887644

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.5e-10  Score=115.14  Aligned_cols=182  Identities=13%  Similarity=0.187  Sum_probs=122.7

Q ss_pred             CCceeEEEEcCCCCCchhhhhhhcc--cccccccCCCccccceeeeecccccCCccceeeeeeccccCCCCCCCcccEEE
Q psy14768        168 TPSYLILITGDSTVGKTSYVQGFVQ--NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILI  245 (452)
Q Consensus       168 ~~~~~Il~vgD~~vGkTsl~~r~~~--~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~~~l~~~~~~~~kI~i  245 (452)
                      .+.+.++|+|....||++|+-|+..  +.++.....-+..                                        
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~----------------------------------------   44 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEK----------------------------------------   44 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHH----------------------------------------
Confidence            3457899999999999999887652  2233211000000                                        


Q ss_pred             eeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeC
Q psy14768        246 TGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDL  325 (452)
Q Consensus       246 vG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~  325 (452)
                       -..+.||+|+--+++-++.-.+...+.+.+.....+..     ..+.|.|+|++|++.|-..+...+.+||++|||+|+
T Consensus        45 -ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-----~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a  118 (428)
T COG5256          45 -EAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-----DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDA  118 (428)
T ss_pred             -HHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-----CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEEC
Confidence             01246898887777777777777788888777777655     566889999999999988888888999999999999


Q ss_pred             CChhhHHH-----HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHH----HHHHHHHcCCC----EEEEecC
Q psy14768        326 TNRKSFES-----VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINE----IEAVCHQYNFM----SWIEVSS  391 (452)
Q Consensus       326 t~~~S~~~-----~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~----~~~~~~~~~~~----~~~evSA  391 (452)
                      .+.+...-     +..-...+.+.     ..-.-+|+++||.|+.+ ++..+++    +..+.+..|+.    +|+.+||
T Consensus       119 ~~~efE~g~~~~gQtrEH~~La~t-----lGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg  193 (428)
T COG5256         119 RDGEFEAGFGVGGQTREHAFLART-----LGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISG  193 (428)
T ss_pred             CCCccccccccCCchhHHHHHHHh-----cCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEeccc
Confidence            98731111     11111111111     12356899999999987 3333333    33455666653    4899999


Q ss_pred             CCCccHHHH
Q psy14768        392 KEHLMIEDS  400 (452)
Q Consensus       392 ktg~nv~~l  400 (452)
                      .+|+|+.+.
T Consensus       194 ~~G~Nl~~~  202 (428)
T COG5256         194 FKGDNLTKK  202 (428)
T ss_pred             ccCCccccc
Confidence            999998753

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.11  E-value=2.7e-10  Score=109.43  Aligned_cols=95  Identities=16%  Similarity=0.213  Sum_probs=77.1

Q ss_pred             chhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHH
Q psy14768        303 DRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQ  380 (452)
Q Consensus       303 e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~  380 (452)
                      ++|..+.+.+++++|++++|||++++. +|+.+..|+..+..       .++|++||+||+||.+ .++..+..+.+ ..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~   95 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RN   95 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCCHHHHHHHHHHH-HH
Confidence            677888888999999999999999877 89999999876653       3599999999999975 33333444444 35


Q ss_pred             cCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768        381 YNFMSWIEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       381 ~~~~~~~evSAktg~nv~~lf~~i~~  406 (452)
                      .+.. ++++||++|.|++++|+.+..
T Consensus        96 ~g~~-v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        96 IGYQ-VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CCCe-EEEEecCCchhHHHHHhhhcC
Confidence            6765 999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.10  E-value=8.5e-11  Score=106.77  Aligned_cols=118  Identities=24%  Similarity=0.313  Sum_probs=71.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh-hh--hhcCCC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS-RV--YYQNSD  317 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~-~~--~i~~ad  317 (452)
                      -.|+++|++|+|||+|..+|..+....+..+. ....   ...+  -......+.++|+||+.+.+... ..  +..++.
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k   77 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK   77 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence            45889999999999999999987555443222 1111   1101  02344567888999999877533 33  588999


Q ss_pred             EEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        318 GCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       318 ~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      +||+|+|++. .....++..+++.+..... .....+|++|++||.|+.
T Consensus        78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~-~~~~~~piLIacNK~Dl~  125 (181)
T PF09439_consen   78 GIIFVVDSSTDQKELRDVAEYLYDILSDTE-VQKNKPPILIACNKQDLF  125 (181)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHH-CCTT--EEEEEEE-TTST
T ss_pred             EEEEEEeCccchhhHHHHHHHHHHHHHhhh-hccCCCCEEEEEeCcccc
Confidence            9999999974 4455566554444433321 124679999999999985

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.10  E-value=1.5e-10  Score=127.47  Aligned_cols=116  Identities=14%  Similarity=0.137  Sum_probs=82.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-----------cccccC-----C--cceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-----------FLDNYK-----N--TVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-----------~~~~~~-----~--t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                      ...+|+++|..++|||||+++|+...           ...++.     .  |+........+..   ++..+.+.|||||
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~---~~~~~~i~liDTP   94 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY---EGNEYLINLIDTP   94 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee---cCCceEEEEEeCC
Confidence            34699999999999999999997421           000111     1  2222222222223   6678899999999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      |+..|......+++.+|++|+|+|+.++...+....|......        ++|+++|+||+|..
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~--------~~p~ivviNKiD~~  151 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE--------NVKPVLFINKVDRL  151 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc--------CCCEEEEEEChhcc
Confidence            9999887778899999999999999987665655555443333        37889999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0082|consensus

Probab=99.02  E-value=1.4e-09  Score=107.80  Aligned_cols=144  Identities=14%  Similarity=0.101  Sum_probs=106.3

Q ss_pred             ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHH
Q psy14768        264 KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQ  336 (452)
Q Consensus       264 ~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~  336 (452)
                      .+.....+|+|..-  ..+.+     +...+.++|++||+.-+.-|.+++++++++|||+++++..       .-..+..
T Consensus       174 DIL~~R~~T~GI~e--~~F~~-----k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~e  246 (354)
T KOG0082|consen  174 DILRSRVPTTGIVE--VEFTI-----KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHE  246 (354)
T ss_pred             HHHhhccCcCCeeE--EEEEe-----CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHH
Confidence            34445567777433  33433     4467889999999998999999999999999999998762       3455667


Q ss_pred             HHHHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHHHHHHHHHc---------CCCEEEEecC
Q psy14768        337 WKHDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINEIEAVCHQY---------NFMSWIEVSS  391 (452)
Q Consensus       337 ~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~~~~~~~~~---------~~~~~~evSA  391 (452)
                      -+..++..++.+...+.++||++||.||.+                .....+++..+....         .-...+++.|
T Consensus       247 S~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~A  326 (354)
T KOG0082|consen  247 SLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCA  326 (354)
T ss_pred             HHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEee
Confidence            778888888888999999999999999842                112334444333221         1232478899


Q ss_pred             CCCccHHHHHHHHHHHHHHhhhh
Q psy14768        392 KEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      .+-.+|+.+|..+...++..+-.
T Consensus       327 tDT~nv~~vf~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  327 TDTQNVQFVFDAVTDTIIQNNLK  349 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877653

>KOG0077|consensus

Probab=99.02  E-value=5.1e-10  Score=97.80  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=110.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      .+.-|++++|-.|+|||||++.+-.++. .++.||.-...  ..+.+     .+++++.+|.+|+..-+..|..|+..+|
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTS--E~l~I-----g~m~ftt~DLGGH~qArr~wkdyf~~v~   89 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELSI-----GGMTFTTFDLGGHLQARRVWKDYFPQVD   89 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCCh--HHhee-----cCceEEEEccccHHHHHHHHHHHHhhhc
Confidence            4567999999999999999998776554 34445443222  23333     4567888999999888889999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH---HHHHcC-----------C
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA---VCHQYN-----------F  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~---~~~~~~-----------~  383 (452)
                      ++++.+|+-+.+-|+..+.-++.+....   .-...|++|.+||+|... ..++++.+.   +.+..+           .
T Consensus        90 ~iv~lvda~d~er~~es~~eld~ll~~e---~la~vp~lilgnKId~p~-a~se~~l~~~l~l~~~t~~~~~v~~~~~~~  165 (193)
T KOG0077|consen   90 AIVYLVDAYDQERFAESKKELDALLSDE---SLATVPFLILGNKIDIPY-AASEDELRFHLGLSNFTTGKGKVNLTDSNV  165 (193)
T ss_pred             eeEeeeehhhHHHhHHHHHHHHHHHhHH---HHhcCcceeecccccCCC-cccHHHHHHHHHHHHHhcccccccccCCCC
Confidence            9999999999999988876555543331   236799999999999875 223333222   222211           1


Q ss_pred             C--EEEEecCCCCccHHHHHHHHHHH
Q psy14768        384 M--SWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       384 ~--~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      .  ..+.||...+.+.-+.|.|+.+.
T Consensus       166 rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  166 RPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CeEEEEEEEEEccCccceeeeehhhh
Confidence            1  13777877777777777776553

>cd01882 BMS1 Bms1

Probab=99.02  E-value=1.9e-09  Score=102.34  Aligned_cols=140  Identities=16%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      .....|+++|.+|+|||+|++.+++..-........|.    ..+.    ......+.++||+|.-  ..+ ...++.+|
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~----~~~~~~i~~vDtPg~~--~~~-l~~ak~aD  105 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV----TGKKRRLTFIECPNDI--NAM-IDIAKVAD  105 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE----ecCCceEEEEeCCchH--HHH-HHHHHhcC
Confidence            44577999999999999999988863111111111110    1111    1245567889999853  222 33468899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEECCCCCC-Cc---ccHHHHHH-HHH-HcCCCEEEEec
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLASKCDLPD-RQ---VEINEIEA-VCH-QYNFMSWIEVS  390 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~NK~Dl~~-~~---~~~e~~~~-~~~-~~~~~~~~evS  390 (452)
                      ++++|+|++.+...++... +..+...       ++|. ++|+||+|+.+ ..   ...+.++. +.. .+.+.+++++|
T Consensus       106 vVllviDa~~~~~~~~~~i-~~~l~~~-------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iS  177 (225)
T cd01882         106 LVLLLIDASFGFEMETFEF-LNILQVH-------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLS  177 (225)
T ss_pred             EEEEEEecCcCCCHHHHHH-HHHHHHc-------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            9999999987766555433 2333222       3674 55999999974 11   11122222 222 33556789999


Q ss_pred             CCCCcc
Q psy14768        391 SKEHLM  396 (452)
Q Consensus       391 Aktg~n  396 (452)
                      |+++..
T Consensus       178 a~~~~~  183 (225)
T cd01882         178 GIVHGR  183 (225)
T ss_pred             eccCCC
Confidence            998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.00  E-value=1.8e-09  Score=105.20  Aligned_cols=147  Identities=14%  Similarity=0.179  Sum_probs=103.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-cc-c-------------------------------ccCCcceeeeEEEEEEee
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-FL-D-------------------------------NYKNTVGVDFSTKLLSHK  285 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~-~-------------------------------~~~~t~~~d~~~~~i~~~  285 (452)
                      ..++++-+|+-.-|||||+-||+.+. .+ .                               +..-++++|.....+   
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF---   81 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF---   81 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec---
Confidence            34678899999999999999998421 11 0                               111234555544444   


Q ss_pred             ecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        286 KYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       286 ~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                        .-.+-+|++-||||++.|...+..-..-||++|+++|+-.+.-.|.-+. ++..+.-.        +-++|++||.||
T Consensus        82 --sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGI--------rhvvvAVNKmDL  151 (431)
T COG2895          82 --STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGI--------RHVVVAVNKMDL  151 (431)
T ss_pred             --ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCC--------cEEEEEEeeecc
Confidence              3456678899999999999888888889999999999976654444332 33333333        568999999999


Q ss_pred             CC-CcccH----HHHHHHHHHcCCC--EEEEecCCCCccHH
Q psy14768        365 PD-RQVEI----NEIEAVCHQYNFM--SWIEVSSKEHLMIE  398 (452)
Q Consensus       365 ~~-~~~~~----e~~~~~~~~~~~~--~~~evSAktg~nv~  398 (452)
                      .+ .+...    ++...|+.++++.  .|+.+||+.|+||-
T Consensus       152 vdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         152 VDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            98 33223    3445577777763  47999999999984

>PTZ00258 GTP-binding protein; Provisional

Probab=98.98  E-value=3.5e-09  Score=107.36  Aligned_cols=86  Identities=20%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe--------------eEEEEEEecCCcch
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR--------------PVKLQIWDIAGQDR  304 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~--------------~~~l~l~DtaG~e~  304 (452)
                      ..++|+|+|.||||||||+|++.+........|.++.+...-.+.++  +..              ..++.++||||...
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~--d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP--DERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc--cchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            35799999999999999999998877666666777766655555441  111              23588999999542


Q ss_pred             hh----hhh---hhhhcCCCEEEEEEeCC
Q psy14768        305 YI----CMS---RVYYQNSDGCIIMFDLT  326 (452)
Q Consensus       305 ~~----~~~---~~~i~~ad~vIlV~D~t  326 (452)
                      -.    .+.   ...++++|++|+|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            11    122   23478899999999984

>KOG0090|consensus

Probab=98.97  E-value=1.2e-08  Score=93.19  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=97.4

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc---CCC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ---NSD  317 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~---~ad  317 (452)
                      -.|+++|..++|||+|.-+|..+.......+     .......+. +...  .+.++|.||+.+.+.-...++.   ++-
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS-----iepn~a~~r-~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~ak  110 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS-----IEPNEATYR-LGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAK  110 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeee-----eccceeeEe-ecCc--ceEEEeCCCcHHHHHHHHHHccccccce
Confidence            5789999999999999999987633322211     111111110 0222  2678899999887765555555   799


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------CcccHHHHHHHHHHcC-------
Q psy14768        318 GCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------RQVEINEIEAVCHQYN-------  382 (452)
Q Consensus       318 ~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------~~~~~e~~~~~~~~~~-------  382 (452)
                      +++||+|...- ....++..++..+...... ....+|++|++||.|+.-       ++..+.++..+.....       
T Consensus       111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~  189 (238)
T KOG0090|consen  111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD  189 (238)
T ss_pred             eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            99999998643 3445555544444333110 246788999999999853       2222222222222111       


Q ss_pred             ------------------------CCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        383 ------------------------FMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       383 ------------------------~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                                              -..|.+.|++++ +++++-+|+.+.
T Consensus       190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                    123789999988 899999998764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.96  E-value=2.2e-09  Score=106.90  Aligned_cols=109  Identities=10%  Similarity=0.063  Sum_probs=69.5

Q ss_pred             eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc-
Q psy14768        290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ-  368 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~-  368 (452)
                      ..+.+.|+||+|...-.   ......||.+++|.+...+...+.+..  ..++          ..-++|+||||+.... 
T Consensus       147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~--gi~E----------~aDIiVVNKaDl~~~~~  211 (332)
T PRK09435        147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK--GIME----------LADLIVINKADGDNKTA  211 (332)
T ss_pred             cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh--hhhh----------hhheEEeehhcccchhH
Confidence            45788999999976221   224678999999977444444443321  1222          2248999999987522 


Q ss_pred             --ccHHHHHHHHHHcC-----C-CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        369 --VEINEIEAVCHQYN-----F-MSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       369 --~~~e~~~~~~~~~~-----~-~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                        ....++........     + .+++.+||+++.||+++++.+.+.+.....
T Consensus       212 a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~  264 (332)
T PRK09435        212 ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA  264 (332)
T ss_pred             HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence              11222333322211     2 458999999999999999999987664433

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.92  E-value=6.1e-09  Score=102.00  Aligned_cols=131  Identities=14%  Similarity=0.102  Sum_probs=77.3

Q ss_pred             eccccCCCCCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh
Q psy14768        228 DIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       228 d~~~~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~  306 (452)
                      +....++......++|+++|.+|+||||++|++++++.. .+...+.+..........     ....+.+|||||.....
T Consensus        26 ~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-----~G~~l~VIDTPGL~d~~  100 (313)
T TIGR00991        26 ELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-----AGFTLNIIDTPGLIEGG  100 (313)
T ss_pred             HHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-----CCeEEEEEECCCCCchH
Confidence            334556666777899999999999999999999986532 222222222222222222     34678999999976542


Q ss_pred             hhhh---hhhc------CCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        307 CMSR---VYYQ------NSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       307 ~~~~---~~i~------~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      .+..   ..++      ..|++|+|..++.. .+..+ ...+..+...++.  .--..+|||+|++|...
T Consensus       101 ~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D-kqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       101 YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD-GQVIRAITDSFGK--DIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH-HHHHHHHHHHhhh--hhhccEEEEEECCccCC
Confidence            2211   1122      58999999665432 22111 2233334333221  12246899999999763

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.92  E-value=4.2e-09  Score=88.00  Aligned_cols=137  Identities=18%  Similarity=0.203  Sum_probs=97.1

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc----chhhhhhhhhhcCCC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----DRYICMSRVYYQNSD  317 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----e~~~~~~~~~i~~ad  317 (452)
                      +++++|..++||++|.+++.++.....  .|..       +++   +.+.    .+||+|.    ..++.-......++|
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQA-------ve~---~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dad   66 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQA-------VEF---NDKG----DIDTPGEYFEHPRWYHALITTLQDAD   66 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--ccce-------eec---cCcc----ccCCchhhhhhhHHHHHHHHHhhccc
Confidence            689999999999999999987654321  2222       112   2221    4699993    222222234467899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++++|-.++++.|.-.-.     +.      .-..+|+|=|++|.||.+ ....+..+.|..+.|..++|++|+.++.+|
T Consensus        67 vi~~v~~and~~s~f~p~-----f~------~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv  134 (148)
T COG4917          67 VIIYVHAANDPESRFPPG-----FL------DIGVKKVIGVVTKADLAE-DADISLVKRWLREAGAEPIFETSAVDNQGV  134 (148)
T ss_pred             eeeeeecccCccccCCcc-----cc------cccccceEEEEecccccc-hHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence            999999999885422110     01      112366999999999985 456778899999999998999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        398 EDSMNFLVD  406 (452)
Q Consensus       398 ~~lf~~i~~  406 (452)
                      +++++.+..
T Consensus       135 ~~l~~~L~~  143 (148)
T COG4917         135 EELVDYLAS  143 (148)
T ss_pred             HHHHHHHHh
Confidence            999988754

>KOG0098|consensus

Probab=98.91  E-value=1.7e-09  Score=96.41  Aligned_cols=47  Identities=28%  Similarity=0.583  Sum_probs=42.0

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +.+.+|++|+||.|||||||+.||+.++|...+..|+|++|..+.+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~   49 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVT   49 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEE
Confidence            35679999999999999999999999999988889999999876644

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.91  E-value=7e-09  Score=114.54  Aligned_cols=116  Identities=16%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cccccCC---------------cceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FLDNYKN---------------TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~---------------t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      -+|+++|..++|||||+.+++... .+.....               +++.+.....+.+ .+++..+.+.|+||||+..
T Consensus        21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~i~liDtPG~~d   99 (731)
T PRK07560         21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH-EYEGKEYLINLIDTPGHVD   99 (731)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE-EecCCcEEEEEEcCCCccC
Confidence            469999999999999999997521 1111100               1222221111211 1144577899999999999


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      |.......++.+|++|+|+|+.++...+....|.......        .|+|+++||+|+.
T Consensus       100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~--------~~~iv~iNK~D~~  152 (731)
T PRK07560        100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRER--------VKPVLFINKVDRL  152 (731)
T ss_pred             hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcC--------CCeEEEEECchhh
Confidence            8877788899999999999999887666666665544433        6889999999975

>KOG0394|consensus

Probab=98.90  E-value=1.9e-09  Score=95.94  Aligned_cols=47  Identities=47%  Similarity=0.791  Sum_probs=42.0

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      .+..++||+|+||+|||||||.|||+.++|...|..|||.||..+++
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev   51 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV   51 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE
Confidence            34567999999999999999999999999999999999999987664

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.90  E-value=4.3e-09  Score=89.19  Aligned_cols=113  Identities=25%  Similarity=0.236  Sum_probs=80.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccC-CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      +|++++|..++|||+|+.++....+...+. ++.+                              +......+++.++.+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------------------------~~~~~~~~~~s~~~~   50 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------------------------IDVYDPTSYESFDVV   50 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh------------------------------hhhccccccCCCCEE
Confidence            489999999999999999997665543322 2221                              233335567889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||.++..+++.+  |...+...    ...+.|+++++||.|+.+ .+...+        .... |+++||+++.|+.
T Consensus        51 ~~v~~~~~~~s~~~~--~~~~i~~~----~k~dl~~~~~~nk~dl~~~~~~~~~--------~~~~-~~~~s~~~~~~~~  115 (124)
T smart00010       51 LQCWRVDDRDSADNK--NVPEVLVG----NKSDLPILVGGNRDVLEEERQVATE--------EGLE-FAETSAKTPEEGE  115 (124)
T ss_pred             EEEEEccCHHHHHHH--hHHHHHhc----CCCCCcEEEEeechhhHhhCcCCHH--------HHHH-HHHHhCCCcchhh
Confidence            999999999998776  77666554    345688999999999853 222222        2222 6778999999885

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0080|consensus

Probab=98.90  E-value=3.6e-09  Score=91.99  Aligned_cols=47  Identities=49%  Similarity=0.710  Sum_probs=34.4

Q ss_pred             CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      ..+++.+||+|||++|||||+|+.||+.+.|......|||+||..+.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~   52 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKV   52 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEE
Confidence            34567788888888888888888888888876555555666665433

>KOG1532|consensus

Probab=98.89  E-value=1.7e-09  Score=101.94  Aligned_cols=215  Identities=14%  Similarity=0.207  Sum_probs=116.9

Q ss_pred             CCCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeeccccCCCCCCCcccEEEe
Q psy14768        167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILIT  246 (452)
Q Consensus       167 ~~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~~~l~~~~~~~~kI~iv  246 (452)
                      ......|++||.+|.|||+++.|+....+.....+.+ +++-..+..+    .-..+++|.|+..     +...+|-.-+
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYv-iNLDPAv~~v----py~aniDIRDtVk-----YkEvMkqY~L   85 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYV-INLDPAVRNV----PYPANIDIRDTVK-----YKEVMKQYQL   85 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeE-EeCCHHHhcC----CCccCCchhhhhh-----HHHHHHHhCC
Confidence            3344679999999999999999987655554433322 2222212111    1233344444421     1122444556


Q ss_pred             eecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hh-----hhhhhhhcC--C
Q psy14768        247 GDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YI-----CMSRVYYQN--S  316 (452)
Q Consensus       247 G~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~-----~~~~~~i~~--a  316 (452)
                      |+.| |-.|-+|-|+.+  .++ ..            +..   ....+.+.++|||||-+ |.     .+....+..  -
T Consensus        86 GPNG-gI~TsLNLF~tk~dqv~-~~------------iek---~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~p  148 (366)
T KOG1532|consen   86 GPNG-GIVTSLNLFATKFDQVI-EL------------IEK---RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFP  148 (366)
T ss_pred             CCCc-chhhhHHHHHHHHHHHH-HH------------HHH---hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCC
Confidence            7654 555555655531  111 10            000   22335678899999743 32     222233333  3


Q ss_pred             CEEEEEEeCCC---hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC------cccHHHHHHHHH--------
Q psy14768        317 DGCIIMFDLTN---RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR------QVEINEIEAVCH--------  379 (452)
Q Consensus       317 d~vIlV~D~t~---~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~------~~~~e~~~~~~~--------  379 (452)
                      -++++|+|...   +.+|=.      .+...|.+......|+|+|.||.|+.+.      -.+.+..++-.+        
T Consensus       149 tvv~YvvDt~rs~~p~tFMS------NMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s  222 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMS------NMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMS  222 (366)
T ss_pred             eEEEEEecCCcCCCchhHHH------HHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            46666777532   333321      1111222234467999999999999761      112222222111        


Q ss_pred             ------------HcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        380 ------------QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       380 ------------~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                                  .+.....+-|||.+|.|.+++|..+.+.+.++...
T Consensus       223 ~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  223 NLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE  269 (366)
T ss_pred             HhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence                        11223368899999999999999999988887554

>KOG0705|consensus

Probab=98.89  E-value=1.3e-08  Score=103.78  Aligned_cols=177  Identities=21%  Similarity=0.340  Sum_probs=135.7

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ...++|+.|+|...+|||+|+.+++...+..+..+.-+ .| .+++.+   ++....+.+.|.+|..     ...|-..+
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv---~gqs~lLlirdeg~~~-----~aQft~wv   96 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVV---DGQSHLLLIRDEGGHP-----DAQFCQWV   96 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEe---eccceEeeeecccCCc-----hhhhhhhc
Confidence            45679999999999999999999999888877655444 33 344444   7788888888988832     24566789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAkt  393 (452)
                      |++||||.+.+..+|+.+..+...+..+.   ....+|+++|+++.-...   +.+......+++.++.-..||+++|.+
T Consensus        97 davIfvf~~~d~~s~q~v~~l~~~l~~~r---~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen   97 DAVVFVFSVEDEQSFQAVQALAHEMSSYR---NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             cceEEEEEeccccCHHHHHHHHhhccccc---ccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhh
Confidence            99999999999999999988877776554   356789999998743222   556666777777777766699999999


Q ss_pred             CccHHHHHHHHHHHHHHhhhhhHHHHhhccccc
Q psy14768        394 HLMIEDSMNFLVDRIICSKRMEEEAVERKSSIR  426 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~~~~~~~~~~~~~s~~  426 (452)
                      |.++...|+.++..++..++..+....+..++.
T Consensus       174 Glnv~rvf~~~~~k~i~~~~~qq~~~~~~~s~~  206 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQLRKYQQLPASSSKSLP  206 (749)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            999999999999999988665554444333333

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.88  E-value=1.4e-08  Score=101.85  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee---------cCC---eeEEEEEEecCCcchh---
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGG---RPVKLQIWDIAGQDRY---  305 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~---------~~~---~~~~l~l~DtaG~e~~---  305 (452)
                      ++|+++|.||||||||+|++.+........|.++.+...-.+.+..         ++.   ....+.++|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            6899999999999999999998765555556666655544444311         000   0135889999995421   


Q ss_pred             -hhhhh---hhhcCCCEEEEEEeCC
Q psy14768        306 -ICMSR---VYYQNSDGCIIMFDLT  326 (452)
Q Consensus       306 -~~~~~---~~i~~ad~vIlV~D~t  326 (452)
                       ..+..   ..++++|++|+|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             11222   2478999999999984

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.87  E-value=3.4e-09  Score=118.45  Aligned_cols=118  Identities=12%  Similarity=0.177  Sum_probs=84.2

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccccC---------------CcceeeeEEEEEEeee-----------cCCeeE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYK---------------NTVGVDFSTKLLSHKK-----------YGGRPV  292 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~---------------~t~~~d~~~~~i~~~~-----------~~~~~~  292 (452)
                      --+|+|+|..++|||||+++++... .+....               .+++.+.....+.+..           .....+
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            4589999999999999999998522 111111               1122221112222210           022367


Q ss_pred             EEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       293 ~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      .+.|+||||+..|.......++.+|++|+|+|+.++...+....|...+...        +|+||++||+|+.
T Consensus        99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~--------~p~i~~iNK~D~~  163 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--------IRPVLTVNKMDRC  163 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCC--------CCEEEEEECCccc
Confidence            7889999999999888888899999999999999998777766676655554        8999999999987

>KOG1144|consensus

Probab=98.86  E-value=9.4e-09  Score=107.89  Aligned_cols=167  Identities=13%  Similarity=0.089  Sum_probs=115.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee----------cC---CeeEEEEEEecCCcchhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK----------YG---GRPVKLQIWDIAGQDRYI  306 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~----------~~---~~~~~l~l~DtaG~e~~~  306 (452)
                      ..-+||+|.-.+|||-|+..+-+..+......+++.-+....+....          +.   .+.--+.++||+|++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            46689999999999999999888777777777777666555554310          00   111236688999999999


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-------------cccHH
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-------------QVEIN  372 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-------------~~~~e  372 (452)
                      .++.+.-.-||.+|||+|+..+..-+.++.+ +.++       ..+.|+||++||+|... .             +....
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR-------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLR-------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH-HHHH-------hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            9999999999999999999987544444332 2222       24599999999999642 0             00011


Q ss_pred             HHH-----------HHHHH-c------------CCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        373 EIE-----------AVCHQ-Y------------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       373 ~~~-----------~~~~~-~------------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      ...           +|.++ +            .+..++.+||.+|+||-+|+.+|++........
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence            111           11111 0            112248899999999999999999887766553

>PTZ00416 elongation factor 2; Provisional

Probab=98.86  E-value=3.6e-09  Score=118.06  Aligned_cols=117  Identities=12%  Similarity=0.221  Sum_probs=81.6

Q ss_pred             ccEEEeeecccCCcceeeecccc-ccccccCC---------------cceeeeEEEEEEeeec-----CCeeEEEEEEec
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQN-KFLDNYKN---------------TVGVDFSTKLLSHKKY-----GGRPVKLQIWDI  299 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~---------------t~~~d~~~~~i~~~~~-----~~~~~~l~l~Dt  299 (452)
                      -+|+++|..++|||||+++|+.. ..+.....               +++.+.....+.+...     +++.+.+.|+||
T Consensus        20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt   99 (836)
T PTZ00416         20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS   99 (836)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence            48999999999999999999852 11111111               1222211122222000     123567899999


Q ss_pred             CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       300 aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      ||+..|.......++.+|++|+|+|+.++...+....|.......        +|+|+|+||+|+.
T Consensus       100 PG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~--------~p~iv~iNK~D~~  157 (836)
T PTZ00416        100 PGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQER--------IRPVLFINKVDRA  157 (836)
T ss_pred             CCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcC--------CCEEEEEEChhhh
Confidence            999988877788899999999999999987777666665444433        8999999999986

>KOG0095|consensus

Probab=98.85  E-value=2.6e-09  Score=91.56  Aligned_cols=49  Identities=37%  Similarity=0.571  Sum_probs=43.3

Q ss_pred             CCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       102 ~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +++++.+|||++||..|||||||++||.+.-|+.-...|||+||-.+.+
T Consensus         1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktv   49 (213)
T KOG0095|consen    1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV   49 (213)
T ss_pred             CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEE
Confidence            3567889999999999999999999999999998888899888876553

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.84  E-value=2.2e-08  Score=100.72  Aligned_cols=157  Identities=17%  Similarity=0.240  Sum_probs=105.8

Q ss_pred             ccEEEeeecccCCcceeeeccccc--ccc--------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK--FLD--------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~--~~~--------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      -+|+|+-.-.-|||||+..++.+.  |..              +..-+++.-.....+     ..+.+.+.|+||||+..
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav-----~~~~~~INIvDTPGHAD   80 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV-----NYNGTRINIVDTPGHAD   80 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee-----ecCCeEEEEecCCCcCC
Confidence            368999999999999999998532  111              111233333333333     44667888999999999


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C-cccHHHHHHHHH---
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R-QVEINEIEAVCH---  379 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~-~~~~e~~~~~~~---  379 (452)
                      |.--.++.+.-.|+++|++|+.++.-=|.---....+...        .+-|+|+||+|... + ....+++..++-   
T Consensus        81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~g--------L~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~  152 (603)
T COG1217          81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALG--------LKPIVVINKIDRPDARPDEVVDEVFDLFVELG  152 (603)
T ss_pred             ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcC--------CCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9988888999999999999999875333222233344444        66678899999886 2 122233444443   


Q ss_pred             ----HcCCCEEEEecCCCCc----------cHHHHHHHHHHHHHHh
Q psy14768        380 ----QYNFMSWIEVSSKEHL----------MIEDSMNFLVDRIICS  411 (452)
Q Consensus       380 ----~~~~~~~~evSAktg~----------nv~~lf~~i~~~i~~~  411 (452)
                          ++.|+ +++.||+.|.          ++.-||+.|++.+-..
T Consensus       153 A~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         153 ATDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             CChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence                34555 8999998863          6778888888776544

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.83  E-value=3.9e-08  Score=102.16  Aligned_cols=168  Identities=16%  Similarity=0.316  Sum_probs=115.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcC---
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN---  315 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~---  315 (452)
                      ..-.|+|+|..++|||||+.+|.+.   ..+.++.+.+|....+.-.. ......+.+|-..|...+..+....+..   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~-~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDED-RDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCc-CCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            4568999999999999999998653   34556777777665554321 2234567888887765566555443332   


Q ss_pred             -CCEEEEEEeCCChhhH-HHHHHHHHHHHhhh-----------------------------hh-----------------
Q psy14768        316 -SDGCIIMFDLTNRKSF-ESVVQWKHDLDSKC-----------------------------IL-----------------  347 (452)
Q Consensus       316 -ad~vIlV~D~t~~~S~-~~~~~~~~~i~~~~-----------------------------~~-----------------  347 (452)
                       --+||+|+|.+.+..+ +.++.|+..++.+.                             ..                 
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence             2478889999999664 56677777666555                             00                 


Q ss_pred             ------------cCCCCCcEEEEEECCCCCC---C-----cccH----HHHHHHHHHcCCCEEEEecCCCCccHHHHHHH
Q psy14768        348 ------------DNGAMLPCLLLASKCDLPD---R-----QVEI----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNF  403 (452)
Q Consensus       348 ------------~~~~~~piilV~NK~Dl~~---~-----~~~~----e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~  403 (452)
                                  ..+-++|++||++|+|...   +     +...    ..++.+|-++|.. +|+||++...|++.++..
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~y  258 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKY  258 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHH
Confidence                        0112489999999999753   1     1122    2245566667776 899999999999999999


Q ss_pred             HHHHHHHh
Q psy14768        404 LVDRIICS  411 (452)
Q Consensus       404 i~~~i~~~  411 (452)
                      |.+.+...
T Consensus       259 i~h~l~~~  266 (472)
T PF05783_consen  259 ILHRLYGF  266 (472)
T ss_pred             HHHHhccC
Confidence            88887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0458|consensus

Probab=98.83  E-value=9.8e-09  Score=105.91  Aligned_cols=141  Identities=16%  Similarity=0.216  Sum_probs=100.3

Q ss_pred             ccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh
Q psy14768        250 TVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK  329 (452)
Q Consensus       250 nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~  329 (452)
                      +.||+++..+++-+.--.+...+++.+.....+..     ....+.|+|+||+..|-..+.....+||+++||+|++...
T Consensus       218 ~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-----~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~  292 (603)
T KOG0458|consen  218 NLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-----KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE  292 (603)
T ss_pred             hcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-----CceeEEEecCCCccccchhhhccccccceEEEEEECCcch
Confidence            67999999998887777777888888888777654     6677889999999999888878888999999999998652


Q ss_pred             ---hHHHHHH--HHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHH----HH-HHcCC----CEEEEecCCCC
Q psy14768        330 ---SFESVVQ--WKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEA----VC-HQYNF----MSWIEVSSKEH  394 (452)
Q Consensus       330 ---S~~~~~~--~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~----~~-~~~~~----~~~~evSAktg  394 (452)
                         .|+.-..  -...+.+.     ..-.-+||++||.|+++ .+...+++..    |+ +..||    ..|+.||+.+|
T Consensus       293 FE~gfd~~gQtrEha~llr~-----Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~G  367 (603)
T KOG0458|consen  293 FESGFDPGGQTREHALLLRS-----LGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSG  367 (603)
T ss_pred             hhhccCCCCchHHHHHHHHH-----cCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccC
Confidence               2221101  11111222     12356899999999998 4444444433    44 44455    24899999999


Q ss_pred             ccHHHH
Q psy14768        395 LMIEDS  400 (452)
Q Consensus       395 ~nv~~l  400 (452)
                      +|+...
T Consensus       368 eNL~k~  373 (603)
T KOG0458|consen  368 ENLIKI  373 (603)
T ss_pred             Cccccc
Confidence            998655

>KOG1707|consensus

Probab=98.83  E-value=1.6e-08  Score=104.35  Aligned_cols=161  Identities=20%  Similarity=0.288  Sum_probs=118.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+...++|..++|||.|++.|+++.+...+..++...+....+..   .+....+.+.|..-. ....+...- ..||++
T Consensus       425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~---~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV---KGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee---ccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            367889999999999999999998877766666666665555555   455666777776644 222222222 689999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +++||.+++.+|+.+...+.....      ....||++|+.|.|+.+ .+...-.-.+++.++++.+-+.+|.++... .
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~------~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~  572 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFD------LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-N  572 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhh------ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-c
Confidence            999999999999998765554432      26799999999999987 333333338899999998778888885333 8


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|..|+.......
T Consensus       573 ~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  573 ELFIKLATMAQYPH  586 (625)
T ss_pred             hHHHHHHHhhhCCC
Confidence            99999998887665

>KOG0094|consensus

Probab=98.82  E-value=3.2e-09  Score=95.36  Aligned_cols=78  Identities=33%  Similarity=0.631  Sum_probs=64.0

Q ss_pred             CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccE
Q psy14768        169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPI  243 (452)
Q Consensus       169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI  243 (452)
                      ..+|++||||.+||||+|+.||..++|+..|.++|+++|..+.+   .+++..+.+++||+     +..+-+.++....+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~---~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v   97 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   97 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEE---EEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence            34899999999999999999999999999999999999999888   56799999999999     44444455555555


Q ss_pred             EEeeec
Q psy14768        244 LITGDS  249 (452)
Q Consensus       244 ~ivG~~  249 (452)
                      +|+=..
T Consensus        98 aviVyD  103 (221)
T KOG0094|consen   98 AVIVYD  103 (221)
T ss_pred             EEEEEe
Confidence            554443

>TIGR00101 ureG urease accessory protein UreG

Probab=98.81  E-value=1.6e-08  Score=94.06  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV  369 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~  369 (452)
                      ...+.+++|.|..--....+ .  -+|.+|+|+|+.+..+...  .+...+.          ..=++++||+|+.+ ...
T Consensus        91 ~~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~----------~ad~~~~~k~d~~~~~~~  155 (199)
T TIGR00101        91 PLEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT----------RSDLLVINKIDLAPMVGA  155 (199)
T ss_pred             CCCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh----------hccEEEEEhhhccccccc
Confidence            35666778887321111111 1  2688999999997665322  1111111          22389999999974 223


Q ss_pred             cHHHHHHHHHH-cCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        370 EINEIEAVCHQ-YNFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       370 ~~e~~~~~~~~-~~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ..+...+..+. ....++++|||++|.|++++|+++.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34444555554 34456999999999999999999986543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.80  E-value=3.7e-08  Score=94.69  Aligned_cols=125  Identities=12%  Similarity=0.109  Sum_probs=73.7

Q ss_pred             CCCCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------
Q psy14768        234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------  306 (452)
Q Consensus       234 ~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------  306 (452)
                      .+.....++|+++|.+|+|||||+|++++.... .......+..........     ....+.+|||||.....      
T Consensus        25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-----~g~~i~vIDTPGl~~~~~~~~~~   99 (249)
T cd01853          25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-----DGFKLNIIDTPGLLESVMDQRVN   99 (249)
T ss_pred             hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-----CCeEEEEEECCCcCcchhhHHHH
Confidence            344556799999999999999999999986542 222222333333323222     34568899999965431      


Q ss_pred             -hh---hhhhhc--CCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        307 -CM---SRVYYQ--NSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       307 -~~---~~~~i~--~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                       ..   ...++.  ..|++++|..++.. .++.+. ..+..+...++  ..--..+++|.||+|...
T Consensus       100 ~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~llk~I~e~fG--~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         100 RKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDL-PLLRAITDSFG--PSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHH-HHHHHHHHHhC--hhhHhCEEEEEeCCccCC
Confidence             01   112333  57888888766543 233332 23333333211  011256999999999854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG3905|consensus

Probab=98.80  E-value=5e-08  Score=94.04  Aligned_cols=169  Identities=20%  Similarity=0.322  Sum_probs=114.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC-
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS-  316 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a-  316 (452)
                      ...-.|+++|+.++|||||+.++-+-.   ....+-+..|....+.-.. .+....+.+|=.-|.-....+....+... 
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~-RDd~tr~~VWiLDGd~~h~~LLk~al~ats  125 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDED-RDDLTRCNVWILDGDLYHKGLLKFALPATS  125 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEeccccc-chhhhhcceEEecCchhhhhHHhhcccccC
Confidence            345689999999999999999987644   4445555555444332211 33445566776667544444443333322 


Q ss_pred             ---CEEEEEEeCCChhh-HHHHHHHHHHHHhhh-----------------------------------------------
Q psy14768        317 ---DGCIIMFDLTNRKS-FESVVQWKHDLDSKC-----------------------------------------------  345 (452)
Q Consensus       317 ---d~vIlV~D~t~~~S-~~~~~~~~~~i~~~~-----------------------------------------------  345 (452)
                         -.+||+.|++++.+ .+.++.|...+.++.                                               
T Consensus       126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d  205 (473)
T KOG3905|consen  126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD  205 (473)
T ss_pred             ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence               37888999999954 577788887776665                                               


Q ss_pred             ----------hhcCCCCCcEEEEEECCCCCC--------CcccH----HHHHHHHHHcCCCEEEEecCCCCccHHHHHHH
Q psy14768        346 ----------ILDNGAMLPCLLLASKCDLPD--------RQVEI----NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNF  403 (452)
Q Consensus       346 ----------~~~~~~~~piilV~NK~Dl~~--------~~~~~----e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~  403 (452)
                                ....+-++|+++|++|+|...        +....    ..++.||-++|.. .|++|+|+..||+-+...
T Consensus       206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKY  284 (473)
T KOG3905|consen  206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKY  284 (473)
T ss_pred             cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHH
Confidence                      011235689999999999842        22222    2355677777877 899999999999999999


Q ss_pred             HHHHHHHh
Q psy14768        404 LVDRIICS  411 (452)
Q Consensus       404 i~~~i~~~  411 (452)
                      |.+.+.-.
T Consensus       285 ivhr~yG~  292 (473)
T KOG3905|consen  285 IVHRSYGF  292 (473)
T ss_pred             HHHHhcCc
Confidence            98877543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.79  E-value=3.8e-08  Score=98.82  Aligned_cols=159  Identities=14%  Similarity=0.130  Sum_probs=98.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc----------------cccCCc---ceeeeEE---EEEEeeecCCeeEEEEE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL----------------DNYKNT---VGVDFST---KLLSHKKYGGRPVKLQI  296 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~----------------~~~~~t---~~~d~~~---~~i~~~~~~~~~~~l~l  296 (452)
                      ..+.|.++|+.++|||||+|+|.+.-.+                ++..++   ++.+...   ..+.+...++-...+.|
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3578999999999999999999976222                222333   3333333   23333333566678999


Q ss_pred             EecCCcchhh--------h--h-------------------hhhhhc-CCCEEEEEE-eCCC----hhhHHHH-HHHHHH
Q psy14768        297 WDIAGQDRYI--------C--M-------------------SRVYYQ-NSDGCIIMF-DLTN----RKSFESV-VQWKHD  340 (452)
Q Consensus       297 ~DtaG~e~~~--------~--~-------------------~~~~i~-~ad~vIlV~-D~t~----~~S~~~~-~~~~~~  340 (452)
                      +||+|...-.        .  +                   ....+. .+|+.|+|. |.+-    ...+... +.|..+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999843211        1  0                   123455 899999998 7641    1223333 457777


Q ss_pred             HHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC--CccHHHHHHHHHH
Q psy14768        341 LDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE--HLMIEDSMNFLVD  406 (452)
Q Consensus       341 i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt--g~nv~~lf~~i~~  406 (452)
                      ++..       ++|+++|+||.|-.. ....+...++.++++.. ++.+|+..  ...|..+|+.++.
T Consensus       176 Lk~~-------~kPfiivlN~~dp~~-~et~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       176 LKEL-------NKPFIILLNSTHPYH-PETEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHhc-------CCCEEEEEECcCCCC-chhHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHHHh
Confidence            7765       599999999999432 22444455666777765 66666653  4556666665543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0079|consensus

Probab=98.77  E-value=2.3e-09  Score=91.90  Aligned_cols=49  Identities=39%  Similarity=0.728  Sum_probs=43.9

Q ss_pred             CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+.++++|.+||||||||||+|+.||..+.|...|+-|+|+||..+.++
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~   51 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD   51 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee
Confidence            3557789999999999999999999999999999999999999876653

>cd01900 YchF YchF subfamily

Probab=98.76  E-value=2.2e-08  Score=97.35  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcchh--
Q psy14768        243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQDRY--  305 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e~~--  305 (452)
                      |+++|.||||||||+|++.+........+.++.+...-.+.+   .+.               ...+.++|+||..+-  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v---~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~   77 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPV---PDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   77 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEe---ccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence            579999999999999999997666666677776665545444   222               135889999995421  


Q ss_pred             --hhhhh---hhhcCCCEEEEEEeCC
Q psy14768        306 --ICMSR---VYYQNSDGCIIMFDLT  326 (452)
Q Consensus       306 --~~~~~---~~i~~ad~vIlV~D~t  326 (452)
                        ..+..   ..++++|++++|+|+.
T Consensus        78 ~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          78 KGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence              12222   2367899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.74  E-value=2.2e-08  Score=93.80  Aligned_cols=101  Identities=13%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc
Q psy14768        292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE  370 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~  370 (452)
                      ..+.|++|.|.-. .  ...+.-..+..+.|+|+.+......  .... +         ...|.++|+||||+.+ ....
T Consensus       103 ~d~IiIEt~G~l~-~--~~~~~~~~~~~i~Vvd~~~~d~~~~--~~~~-~---------~~~a~iiv~NK~Dl~~~~~~~  167 (207)
T TIGR00073       103 IDLLFIENVGNLV-C--PADFDLGEHMRVVLLSVTEGDDKPL--KYPG-M---------FKEADLIVINKADLAEAVGFD  167 (207)
T ss_pred             CCEEEEecCCCcC-C--CcccccccCeEEEEEecCcccchhh--hhHh-H---------HhhCCEEEEEHHHccccchhh
Confidence            4566777777200 0  0111123456667888875432111  1011 1         1267899999999975 2222


Q ss_pred             HHHHHHHHHHc-CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        371 INEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       371 ~e~~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      .+...+..++. ...+++++||+++.|++++|+++.+.
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33444444443 33459999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd00066 G-alpha G protein alpha subunit

Probab=98.73  E-value=8.1e-08  Score=95.80  Aligned_cols=123  Identities=15%  Similarity=0.119  Sum_probs=90.4

Q ss_pred             eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      ..+.+.+||++||+..+..|..++.+++++|+|+|+++..       ..+.+...+..++..++.....++|++|++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            4678999999999999999999999999999999999742       124445555555555444456789999999999


Q ss_pred             CCCC----------------C-cccHHHHHHHHHHc---------CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        363 DLPD----------------R-QVEINEIEAVCHQY---------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       363 Dl~~----------------~-~~~~e~~~~~~~~~---------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      |+.+                . ....+.+..+....         .....++|+|.+..++..+|..+...++...
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9632                1 22344444433321         1222478999999999999999999988765

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0087|consensus

Probab=98.71  E-value=2e-08  Score=91.44  Aligned_cols=52  Identities=35%  Similarity=0.657  Sum_probs=46.6

Q ss_pred             CCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       101 ~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .++..+++|||++|||++||||-|+-||..+.|..+..+|||++|..+.+..
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v   58 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV   58 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee
Confidence            3467789999999999999999999999999999999999999998877543

>KOG3886|consensus

Probab=98.70  E-value=7e-08  Score=89.07  Aligned_cols=120  Identities=21%  Similarity=0.298  Sum_probs=84.8

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----hhhhhhhc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-----CMSRVYYQ  314 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-----~~~~~~i~  314 (452)
                      -||+++|++|+|||++-..+..+. ......++.+.|+....+.+   - ..+.+.+||.+||+.+-     ......++
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf---l-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~   80 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF---L-GNLVLNLWDCGGQEEFMENYLSSQEDNIFR   80 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh---h-hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence            589999999999999865544322 22334456666666555443   2 23678999999998542     34566899


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        315 NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       315 ~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +.+++|+|||+...+-..|+..+...++..+  ...+...+.+...|.||..
T Consensus        81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   81 NVQVLIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             eheeeeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcc
Confidence            9999999999998776677766555444432  2356777889999999975

>KOG0461|consensus

Probab=98.70  E-value=8.9e-08  Score=93.00  Aligned_cols=168  Identities=19%  Similarity=0.163  Sum_probs=103.3

Q ss_pred             cccEEEeeecccCCcceeeecccc-------ccccccCCcceeeeEEEEEEee----ecCCeeEEEEEEecCCcchhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN-------KFLDNYKNTVGVDFSTKLLSHK----KYGGRPVKLQIWDIAGQDRYICM  308 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~-------~~~~~~~~t~~~d~~~~~i~~~----~~~~~~~~l~l~DtaG~e~~~~~  308 (452)
                      .+++.++|.-.+|||+|.+++..-       ....+...+++.|.....+.+.    .-.++..++.++|++|+...-..
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            478899999999999999988741       1112223445555554444431    11456678899999998543322


Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHH-HHHHH---HHc
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINE-IEAVC---HQY  381 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~-~~~~~---~~~  381 (452)
                      ......-.|..|+|+|++.+..-|..+.++---..+        ...|+|+||+|+..   ++...++ ..++.   +..
T Consensus        87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c--------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC--------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHhhhheeeeeeEEEehhcccccccchhhhhhhhhc--------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            222233458899999999886666655432211111        55788899998764   2222222 22222   222


Q ss_pred             ---CCCEEEEecCCCC----ccHHHHHHHHHHHHHHhhhhh
Q psy14768        382 ---NFMSWIEVSSKEH----LMIEDSMNFLVDRIICSKRME  415 (452)
Q Consensus       382 ---~~~~~~evSAktg----~nv~~lf~~i~~~i~~~~~~~  415 (452)
                         +..+++++||+.|    +.|.++.+.+-.++.+.++.+
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence               3356899999999    677777777777766655543

>cd01855 YqeH YqeH

Probab=98.69  E-value=8.6e-08  Score=88.36  Aligned_cols=95  Identities=15%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----H
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----H  379 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~  379 (452)
                      +..++..+++++|++|+|+|+++....     |...+...     ..++|+++|+||+|+.......+....+.     +
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~   93 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAA   93 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHh
Confidence            567778899999999999999876421     22222111     23589999999999975333444444444     2


Q ss_pred             HcCC--CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        380 QYNF--MSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       380 ~~~~--~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ..+.  ..++++||+++.|++++++.+.+.+.
T Consensus        94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          94 GLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            2332  34899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.68  E-value=1.2e-08  Score=97.57  Aligned_cols=110  Identities=19%  Similarity=0.173  Sum_probs=58.7

Q ss_pred             EEEEEecCCcchhhhhhhhh------h--cCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        293 KLQIWDIAGQDRYICMSRVY------Y--QNSDGCIIMFDLTNR---KSFESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       293 ~l~l~DtaG~e~~~~~~~~~------i--~~ad~vIlV~D~t~~---~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                      .+.|+|||||-++...+...      +  ...-++++++|+.-.   ..|-..  ++..+...    ...+.|.|.|+||
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~----~~~~lP~vnvlsK  165 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIM----LRLELPHVNVLSK  165 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHH----HHHTSEEEEEE--
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHH----hhCCCCEEEeeec
Confidence            68899999998766554332      2  234588889997643   333222  22222111    1124999999999


Q ss_pred             CCCCCCc-----------------------ccHHHHHHHHHHcCCC-EEEEecCCCCccHHHHHHHHHHHH
Q psy14768        362 CDLPDRQ-----------------------VEINEIEAVCHQYNFM-SWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       362 ~Dl~~~~-----------------------~~~e~~~~~~~~~~~~-~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      +|+.+..                       ...+.+.++...++.. .|+.+|+++++++.+++..+-+++
T Consensus       166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            9997511                       0011122222333555 689999999999999999887664

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>smart00275 G_alpha G protein alpha subunit

Probab=98.68  E-value=7.3e-08  Score=97.03  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHH
Q psy14768        269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDL  341 (452)
Q Consensus       269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i  341 (452)
                      ..+|+|....  .+.+     ..+.+.+||.+||+.++..|..++.+++++|+|+|+++..       .-..+...+..+
T Consensus       168 r~~T~Gi~~~--~f~~-----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f  240 (342)
T smart00275      168 RVPTTGIQET--AFIV-----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLF  240 (342)
T ss_pred             eCCccceEEE--EEEE-----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHH
Confidence            4466664433  3333     4467899999999999999999999999999999999742       123444555555


Q ss_pred             HhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHHHHHHHHH-----cC-----CCEEEEecCCCCc
Q psy14768        342 DSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINEIEAVCHQ-----YN-----FMSWIEVSSKEHL  395 (452)
Q Consensus       342 ~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~~~~~~~~-----~~-----~~~~~evSAktg~  395 (452)
                      +..++.....++|++|++||.|+..                .....+.+..+...     ..     ....++|+|.+-.
T Consensus       241 ~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~  320 (342)
T smart00275      241 ESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTR  320 (342)
T ss_pred             HHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccH
Confidence            5555555667899999999999742                11233333333322     11     1334789999999


Q ss_pred             cHHHHHHHHHHHHHHhhh
Q psy14768        396 MIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~  413 (452)
                      ++..+|+.+...++....
T Consensus       321 ~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      321 NIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998887653

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01859 MJ1464 MJ1464

Probab=98.65  E-value=9.2e-08  Score=85.18  Aligned_cols=94  Identities=16%  Similarity=0.106  Sum_probs=64.1

Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCE
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMS  385 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~  385 (452)
                      +.+..+.++++|++|+|+|++++...++. .+...+.       ..++|+++|+||+|+.+... .+....+....+.. 
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~-------~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~-   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL-------ELGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIP-   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH-------hCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCc-
Confidence            45567788899999999999887544432 1222221       12489999999999864211 11122333444444 


Q ss_pred             EEEecCCCCccHHHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ++++||+++.|++++++.+.+.+.
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHHHh
Confidence            899999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.7e-07  Score=90.51  Aligned_cols=170  Identities=14%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeee------------------cC---CeeEE
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKK------------------YG---GRPVK  293 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~------------------~~---~~~~~  293 (452)
                      ..+++|.++|.-.-|||||..++.+   .++..+...+++.....-...+..                  ++   .-.-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            3568899999999999999999986   333333333332211111111100                  00   11235


Q ss_pred             EEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---ccc
Q psy14768        294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVE  370 (452)
Q Consensus       294 l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~  370 (452)
                      +.|+|.+|++-.-+.+-.-..--|++|||++++++..--....-+..++-.      .-+-+|||-||.||..+   ...
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi------gik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII------GIKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh------ccceEEEEecccceecHHHHHHH
Confidence            779999999876544433333459999999999863221111112222221      12569999999999872   345


Q ss_pred             HHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        371 INEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       371 ~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ++++++|.+--  ...+++.+||..+.||+-+++.|.+.+-...+
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            56666666553  22458999999999999999999887765544

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.63  E-value=1.9e-07  Score=87.82  Aligned_cols=162  Identities=10%  Similarity=0.093  Sum_probs=93.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccC--CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hh---hh-
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYK--NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CM---SR-  310 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~--~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~---~~-  310 (452)
                      .+|+++|..|+||||++|.+++........  ...+.........+   ++  ..+.++||||...-.    .+   .. 
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~---~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~   75 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV---DG--RQVTVIDTPGLFDSDGSDEEIIREIKR   75 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE---TT--EEEEEEE--SSEETTEEHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee---cc--eEEEEEeCCCCCCCcccHHHHHHHHHH
Confidence            368999999999999999999865543321  22233333333344   45  456788999942211    11   11 


Q ss_pred             ---hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc--------cHHHHHHHHH
Q psy14768        311 ---VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV--------EINEIEAVCH  379 (452)
Q Consensus       311 ---~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~--------~~e~~~~~~~  379 (452)
                         ......|++|||+.+. ..+..+... +..+...++..  .-.-+|||.+.+|......        ..+.++++.+
T Consensus        76 ~l~~~~~g~ha~llVi~~~-r~t~~~~~~-l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~  151 (212)
T PF04548_consen   76 CLSLCSPGPHAFLLVIPLG-RFTEEDREV-LELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIE  151 (212)
T ss_dssp             HHHHTTT-ESEEEEEEETT-B-SHHHHHH-HHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCeEEEEEEecC-cchHHHHHH-HHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhh
Confidence               1244689999999998 444444332 33333332211  1134888889888665111        1134667788


Q ss_pred             HcCCCEEEEecCC------CCccHHHHHHHHHHHHHHhh
Q psy14768        380 QYNFMSWIEVSSK------EHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       380 ~~~~~~~~evSAk------tg~nv~~lf~~i~~~i~~~~  412 (452)
                      +.+.. |+..+.+      ....+.+||+.+-+.+.+..
T Consensus       152 ~c~~R-~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  152 KCGGR-YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HTTTC-EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCCE-EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            88876 7777766      23568888888888877775

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG0078|consensus

Probab=98.62  E-value=3.5e-08  Score=90.11  Aligned_cols=51  Identities=35%  Similarity=0.636  Sum_probs=47.3

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK  154 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (452)
                      .+++++||++|||+||||||++.||.++.|...++.|+|+||..+.+....
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g   58 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG   58 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC
Confidence            668899999999999999999999999999999999999999998876554

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=4e-07  Score=91.67  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=112.4

Q ss_pred             cEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      -|...|.-.-|||+|+..+.+   +.....-.-+++.|........   .+  ..+.|+|++|++++-..+...+...|.
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~---~d--~~~~fIDvpgh~~~i~~miag~~~~d~   76 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL---ED--GVMGFIDVPGHPDFISNLLAGLGGIDY   76 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC---CC--CceEEeeCCCcHHHHHHHHhhhcCCce
Confidence            356678888999999999886   3444555567777766665544   33  367888999999988777777788999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC--CCEEEEecCCCCcc
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN--FMSWIEVSSKEHLM  396 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~--~~~~~evSAktg~n  396 (452)
                      ++||+|++++...+..+... .+...      ...-.++|++|.|..+.+...+..+++.....  ..++|.+|+++|++
T Consensus        77 alLvV~~deGl~~qtgEhL~-iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G  149 (447)
T COG3276          77 ALLVVAADEGLMAQTGEHLL-ILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG  149 (447)
T ss_pred             EEEEEeCccCcchhhHHHHH-HHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence            99999999887766665422 12111      12446999999999873333444444444443  34579999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRII  409 (452)
Q Consensus       397 v~~lf~~i~~~i~  409 (452)
                      |+++-+.+.....
T Consensus       150 I~~Lk~~l~~L~~  162 (447)
T COG3276         150 IEELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998875

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.6e-07  Score=92.58  Aligned_cols=131  Identities=9%  Similarity=0.192  Sum_probs=91.3

Q ss_pred             ccEEEeeecccCCcceeeeccc-cccccc---------------c----CCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ-NKFLDN---------------Y----KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~-~~~~~~---------------~----~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                      -..+||..|.+|||||..+++- ...+..               .    ...-|+++.+...++   +...+.++|.|||
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF---~Y~~~~iNLLDTP   89 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF---DYADCLVNLLDTP   89 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe---ccCCeEEeccCCC
Confidence            4678999999999999988872 111100               0    001244455555555   6677889999999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ  380 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~  380 (452)
                      |++.|+.-..+.+..+|.+++|+|+..+..-+.++.+  ++-      ...++||+=++||+|... ....+.+.++-+.
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLf--eVc------rlR~iPI~TFiNKlDR~~-rdP~ELLdEiE~~  160 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLF--EVC------RLRDIPIFTFINKLDREG-RDPLELLDEIEEE  160 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCccHHHHHHH--HHH------hhcCCceEEEeecccccc-CChHHHHHHHHHH
Confidence            9999998888888999999999999987655544332  222      235699999999999764 3345566666666


Q ss_pred             cCC
Q psy14768        381 YNF  383 (452)
Q Consensus       381 ~~~  383 (452)
                      +++
T Consensus       161 L~i  163 (528)
T COG4108         161 LGI  163 (528)
T ss_pred             hCc
Confidence            544

>KOG0092|consensus

Probab=98.52  E-value=1.6e-07  Score=84.57  Aligned_cols=75  Identities=33%  Similarity=0.615  Sum_probs=62.5

Q ss_pred             CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccE
Q psy14768        169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPI  243 (452)
Q Consensus       169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI  243 (452)
                      ..+||++|||.+||||+|+.||+.++|.+...++++.-|..+.+   .+++..+.+.|||+     +..+.+.++.....
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv---~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A   80 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTV---TVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA   80 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEE---EeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence            45899999999999999999999999999999999999999888   45688999999999     45555555555555


Q ss_pred             EEe
Q psy14768        244 LIT  246 (452)
Q Consensus       244 ~iv  246 (452)
                      +|+
T Consensus        81 Aiv   83 (200)
T KOG0092|consen   81 AIV   83 (200)
T ss_pred             EEE
Confidence            444

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.50  E-value=2.5e-07  Score=83.08  Aligned_cols=63  Identities=17%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             EEEEEecCCcch----hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        293 KLQIWDIAGQDR----YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       293 ~l~l~DtaG~e~----~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      .+.|+||||...    ...+...++..+|++|+|.+++...+-.+...+.......       ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            377999999642    3356677889999999999999987777776666666554       24489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.48  E-value=1.8e-07  Score=94.12  Aligned_cols=165  Identities=19%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceee-eEEEEEEeeecCCeeEEEEEEecCCcch--hhh---hhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD-FSTKLLSHKKYGGRPVKLQIWDIAGQDR--YIC---MSRV  311 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d-~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~---~~~~  311 (452)
                      ...++|+|+|.+|+|||||||.+.+-.-.....+.+|.. .......+.  ..+.-.+.+||.||.-.  |..   +...
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            346899999999999999999997622121222222210 000111111  11112488999999532  211   1122


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC--C------Cc----ccHHHHHHHHH
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP--D------RQ----VEINEIEAVCH  379 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~--~------~~----~~~e~~~~~~~  379 (452)
                      -+...|.+|++.+  +..+..++..+...-..        ++|+++|-+|.|..  .      +.    ...+++++.+.
T Consensus       111 ~~~~yD~fiii~s--~rf~~ndv~La~~i~~~--------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~  180 (376)
T PF05049_consen  111 KFYRYDFFIIISS--ERFTENDVQLAKEIQRM--------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL  180 (376)
T ss_dssp             TGGG-SEEEEEES--SS--HHHHHHHHHHHHT--------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred             cccccCEEEEEeC--CCCchhhHHHHHHHHHc--------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence            3667898888765  33444555444333333        49999999999951  0      11    11223333322


Q ss_pred             H----cCC--CEEEEecCCC--CccHHHHHHHHHHHHHHhhhh
Q psy14768        380 Q----YNF--MSWIEVSSKE--HLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       380 ~----~~~--~~~~evSAkt--g~nv~~lf~~i~~~i~~~~~~  414 (452)
                      +    .+.  +++|-+|..+  ..++..+.+.+.+.+-..++.
T Consensus       181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            2    232  4579999988  356778888888777776664

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.47  E-value=3.9e-07  Score=90.16  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=64.2

Q ss_pred             hhcCCCEEEEEEeCCChhhHHH-HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFES-VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~-~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      .+.++|++|+|+|++++.++.. +..|+..+..       .++|++||+||+|+.+.....+...++.+.+++. ++++|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vS  148 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELS  148 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEe
Confidence            4689999999999988866544 4667666543       3589999999999964221223344455666765 89999


Q ss_pred             CCCCccHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLV  405 (452)
Q Consensus       391 Aktg~nv~~lf~~i~  405 (452)
                      |+++.|++++++.+.
T Consensus       149 A~~g~gi~~L~~~l~  163 (298)
T PRK00098        149 AKEGEGLDELKPLLA  163 (298)
T ss_pred             CCCCccHHHHHhhcc
Confidence            999999999998874

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.46  E-value=8.8e-07  Score=87.75  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=65.7

Q ss_pred             eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc
Q psy14768        290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV  369 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~  369 (452)
                      ..+.+.|+||+|....   ....+..+|.++++.+..   +.+++......+.         .+|.++|+||+|+.....
T Consensus       125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~  189 (300)
T TIGR00750       125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM---------EIADIYVVNKADGEGATN  189 (300)
T ss_pred             CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh---------hhccEEEEEcccccchhH
Confidence            3578899999985421   123567789888885433   3344444333332         267899999999975111


Q ss_pred             cH---H----HHHHHHHH-cCC-CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        370 EI---N----EIEAVCHQ-YNF-MSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       370 ~~---e----~~~~~~~~-~~~-~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ..   .    ....+... .++ .+++++||+++.|++++++++.+...
T Consensus       190 ~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       190 VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00   0    01111111 122 24899999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.46  E-value=6.5e-07  Score=90.21  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=67.0

Q ss_pred             hhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCE
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMS  385 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~  385 (452)
                      .+....+.++|++++|+|+.++. .+..+..|+..+..       .++|++||+||+||.+... .+...+....+++. 
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~-  151 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQ-  151 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCe-
Confidence            34455689999999999999775 45566777765533       3599999999999974111 12223333466775 


Q ss_pred             EEEecCCCCccHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~  407 (452)
                      ++++||+++.|++++++.+...
T Consensus       152 v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        152 PLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEEEcCCCCCHHHHhhhhccc
Confidence            8999999999999999988654

>KOG0393|consensus

Probab=98.44  E-value=2.2e-07  Score=85.15  Aligned_cols=85  Identities=29%  Similarity=0.548  Sum_probs=73.7

Q ss_pred             ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeeccccc-CCccceeeeeec-----cccCCCCCCCcccE
Q psy14768        170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY-GGRPVKLQIWDI-----YCTLSPIQIPTYPI  243 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~i-d~~~~~l~i~d~-----~~~l~~~~~~~~kI  243 (452)
                      .+++++|||+.+|||+|+..|+.+.|..+|.|++..++...+.    + ++..+++.+||+     |+.+++.++....+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~----V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv   79 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVT----VDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV   79 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEE----ecCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence            4789999999999999999999999999999999977766553    5 499999999999     88899999988899


Q ss_pred             EEeeecccCCcceee
Q psy14768        244 LITGDSTVGKTSYVQ  258 (452)
Q Consensus       244 ~ivG~~nvGKSSLin  258 (452)
                      +++..+-+-+.||.|
T Consensus        80 fl~cfsv~~p~S~~n   94 (198)
T KOG0393|consen   80 FLLCFSVVSPESFEN   94 (198)
T ss_pred             EEEEEEcCChhhHHH
Confidence            998877666666654

>KOG0086|consensus

Probab=98.44  E-value=1.9e-07  Score=80.57  Aligned_cols=49  Identities=33%  Similarity=0.708  Sum_probs=42.3

Q ss_pred             CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +.+++++|++++|..|.|||||+++|+.++|..+...|||++|..+.+.
T Consensus         4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIin   52 (214)
T KOG0086|consen    4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVN   52 (214)
T ss_pred             hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeee
Confidence            5678899999999999999999999999999888888888888765543

>PRK13768 GTPase; Provisional

Probab=98.44  E-value=9.7e-07  Score=85.25  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             EEEEEecCCcchh---hhhhhhh---hcC--CCEEEEEEeCCChhhHHHHHH--HHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        293 KLQIWDIAGQDRY---ICMSRVY---YQN--SDGCIIMFDLTNRKSFESVVQ--WKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       293 ~l~l~DtaG~e~~---~~~~~~~---i~~--ad~vIlV~D~t~~~S~~~~~~--~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      .+.+|||+|+.++   +..+..+   +..  ++++++|+|++...+..+...  |+......     ..++|+++|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhH
Confidence            5789999998664   3333333   333  899999999977655444432  22222211     1359999999999


Q ss_pred             CCCCCcccHHHHHH----------------------------HHHHcC-CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        363 DLPDRQVEINEIEA----------------------------VCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       363 Dl~~~~~~~e~~~~----------------------------~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      |+..... .+....                            ..+..+ ...++++||+++.+++++++++.+.+
T Consensus       173 D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        173 DLLSEEE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhcCchh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            9875111 111111                            122333 23589999999999999999997765

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.44  E-value=7.4e-07  Score=90.48  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=71.4

Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH----
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV----  377 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~----  377 (452)
                      .+.|..+...+++.++++++|+|+.+..     ..|...+.+..     .++|+++|+||+|+..+....+.+.+|    
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~  119 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR  119 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence            5678888888889999999999997654     22444444441     257999999999997644444555444    


Q ss_pred             HHHcCCC--EEEEecCCCCccHHHHHHHHHHH
Q psy14768        378 CHQYNFM--SWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       378 ~~~~~~~--~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      ++..++.  .++++||++|.|++++|+.+.+.
T Consensus       120 ~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       120 AKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            5566653  48999999999999999998664

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.44  E-value=4.5e-07  Score=83.18  Aligned_cols=39  Identities=38%  Similarity=0.594  Sum_probs=34.4

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..+||++||++|||||||++||+.+.|..+|.||++.++
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~   42 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY   42 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee
Confidence            358999999999999999999999999888888886544

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01892 Miro2 Miro2 subfamily

Probab=98.44  E-value=3.4e-07  Score=82.68  Aligned_cols=45  Identities=20%  Similarity=0.471  Sum_probs=39.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~  151 (452)
                      ..+||++||++|||||||++||+++.|. .+|.+|++.++....+.
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~   48 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVE   48 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEE
Confidence            4589999999999999999999999998 89999999888655443

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0410|consensus

Probab=98.43  E-value=1.5e-07  Score=90.94  Aligned_cols=159  Identities=13%  Similarity=0.112  Sum_probs=102.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc---------hhhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD---------RYICM  308 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e---------~~~~~  308 (452)
                      ....-|+++|..|+|||||+++|..-.......-..+.|........+  ++.  .+.+.||-|--         .|++.
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp--sg~--~vlltDTvGFisdLP~~LvaAF~AT  251 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP--SGN--FVLLTDTVGFISDLPIQLVAAFQAT  251 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC--CCc--EEEEeechhhhhhCcHHHHHHHHHH
Confidence            345679999999999999999998644444443444444444444442  333  45567999832         22222


Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      . .-+..+|.++-|.|++.+.-.+..+..+..+...--......--++=|-||.|..+.....|       +.+   -+-
T Consensus       252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-------~n~---~v~  320 (410)
T KOG0410|consen  252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-------KNL---DVG  320 (410)
T ss_pred             H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-------cCC---ccc
Confidence            1 22578999999999999987777666666666651001111222556778888765222211       111   377


Q ss_pred             ecCCCCccHHHHHHHHHHHHHHh
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +||++|++++++...+-.++...
T Consensus       321 isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhhh
Confidence            89999999999998887776654

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.43  E-value=3.6e-07  Score=86.46  Aligned_cols=37  Identities=35%  Similarity=0.599  Sum_probs=32.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +||+|||++|||||+|++||+++.|..+|.||++.++
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~   38 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY   38 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce
Confidence            6899999999999999999999999888888885444

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04131 Rnd Rnd subfamily

Probab=98.42  E-value=5.3e-07  Score=82.30  Aligned_cols=37  Identities=35%  Similarity=0.579  Sum_probs=32.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +||++||++|||||||++||+++.|..+|.+|++.++
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~   38 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY   38 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE
Confidence            6899999999999999999999999888888886544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.42  E-value=8.7e-07  Score=87.19  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             hhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        310 RVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ...+.++|++++|+|+.++. ++..+..|+..+...       ++|++||+||+||.+.. .......+....+.. +++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g~~-v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDDE-EEELELVEALALGYP-VLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCChH-HHHHHHHHHHhCCCe-EEE
Confidence            34588999999999999987 888888888776643       48999999999997521 111223334455654 899


Q ss_pred             ecCCCCccHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~  406 (452)
                      +||+++.|+++++..+..
T Consensus       144 vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         144 VSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EECCCCccHHHHHhhhcc
Confidence            999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>smart00053 DYNc Dynamin, GTPase

Probab=98.42  E-value=1.1e-06  Score=83.79  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=46.0

Q ss_pred             EEEEEEecCCcchh-------------hhhhhhhhcC-CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEE
Q psy14768        292 VKLQIWDIAGQDRY-------------ICMSRVYYQN-SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL  357 (452)
Q Consensus       292 ~~l~l~DtaG~e~~-------------~~~~~~~i~~-ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piil  357 (452)
                      ..|.|+||+|....             ..+...|+++ .+++++|+|+.....-++...+...+..       ...++++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------~~~rti~  197 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------QGERTIG  197 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-------cCCcEEE
Confidence            56889999997421             1233457774 5699999999765554443333333333       3589999


Q ss_pred             EEECCCCCC
Q psy14768        358 LASKCDLPD  366 (452)
Q Consensus       358 V~NK~Dl~~  366 (452)
                      |+||.|..+
T Consensus       198 ViTK~D~~~  206 (240)
T smart00053      198 VITKLDLMD  206 (240)
T ss_pred             EEECCCCCC
Confidence            999999875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=9.4e-07  Score=95.89  Aligned_cols=115  Identities=15%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             cccEEEeeecccCCcceeeeccccc-ccc-----------------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLD-----------------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~-----------------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      .-+|.|++.-.+|||||..+++-.. .+.                 +..-+++.......+.+   .+ .+.++|+||||
T Consensus        10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~---~~-~~~iNlIDTPG   85 (697)
T COG0480          10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW---KG-DYRINLIDTPG   85 (697)
T ss_pred             ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE---cC-ceEEEEeCCCC
Confidence            3578999999999999999887311 110                 01123343333334433   22 48899999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +-.|..-..+.++-+|++++|+|+.++...|.-..|....+..        +|.++++||.|...
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~--------vp~i~fiNKmDR~~  142 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYG--------VPRILFVNKMDRLG  142 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcC--------CCeEEEEECccccc
Confidence            9999988899999999999999999998888888888877766        99999999999864

>KOG0468|consensus

Probab=98.39  E-value=9.4e-07  Score=92.27  Aligned_cols=121  Identities=18%  Similarity=0.252  Sum_probs=89.2

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccC-----------------CcceeeeEEEEEEeeecCCeeEEEEEEec
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYK-----------------NTVGVDFSTKLLSHKKYGGRPVKLQIWDI  299 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-----------------~t~~~d~~~~~i~~~~~~~~~~~l~l~Dt  299 (452)
                      ......++++|.-..|||+|+..|..+....-..                 .+......-.++......++.+.++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            3345689999999999999998887543221110                 01111112222222234678889999999


Q ss_pred             CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       300 aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      +|+-.|..-....++.+|++++|+|+-++.+++.-+.....+...        .|+++|+||.|..
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~--------~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNR--------LPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhcc--------CcEEEEEehhHHH
Confidence            999999888888999999999999999999888877766666665        9999999999963

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.33  E-value=2.6e-07  Score=82.17  Aligned_cols=44  Identities=16%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ++|++||.||||||||||++++.+.....-|+.+++.....+..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~   44 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL   44 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe
Confidence            47999999999999999999999876555566666665544443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=98.32  E-value=2.7e-06  Score=85.76  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc--ccHHHHHHHHHHcCCCEEEEe
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ--VEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ...++|.+++|++++...++..+..|+..+..       .++|++||+||+||.+..  .......+....+++. ++++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~-v~~v  188 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYR-VLMV  188 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCe-EEEE
Confidence            35789999999999988999999999876553       358999999999997521  1112223334456664 8999


Q ss_pred             cCCCCccHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~  407 (452)
                      ||+++.|++++++.+...
T Consensus       189 SA~tg~GideL~~~L~~k  206 (347)
T PRK12288        189 SSHTGEGLEELEAALTGR  206 (347)
T ss_pred             eCCCCcCHHHHHHHHhhC
Confidence            999999999999988653

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.32  E-value=2.3e-06  Score=90.80  Aligned_cols=119  Identities=12%  Similarity=0.094  Sum_probs=70.9

Q ss_pred             cccEEEeeecccCCcceeeeccccc-ccccc-CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhh-
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNY-KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMS-  309 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~-~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~-  309 (452)
                      .++|+++|.+|+||||++|.++++. +.... .+.++. ........   +  ...+.++||||.....       .+. 
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i---d--G~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV---Q--GVKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE---C--CceEEEEECCCCCccccchHHHHHHHH
Confidence            4789999999999999999999865 43332 233332 22222222   3  3568899999965321       111 


Q ss_pred             --hhhhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        310 --RVYYQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       310 --~~~i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                        ..++.  ..|++|+|..++.......-..++..+...++..  --.-+|||.++||...
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence              12444  4899999988764433211123444444333211  1133899999999874

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd04142 RRP22 RRP22 subfamily

Probab=98.32  E-value=5.2e-07  Score=83.86  Aligned_cols=41  Identities=27%  Similarity=0.463  Sum_probs=35.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      +||+|||++|||||||++||+++.|...+.||++.++....
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~   41 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPA   41 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeE
Confidence            48999999999999999999999999889999887764433

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.32  E-value=4.8e-07  Score=84.08  Aligned_cols=44  Identities=50%  Similarity=0.838  Sum_probs=39.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      +||++||++|||||||++||++..|...+.+|+|.++..+.+..
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~   44 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEW   44 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE
Confidence            58999999999999999999999999889999999887665543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=2.3e-06  Score=81.81  Aligned_cols=142  Identities=15%  Similarity=0.168  Sum_probs=95.4

Q ss_pred             CcccEEEeeecccCCcceeeeccc---c-------------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ---N-------------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~---~-------------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      ..++|..+|.-+-|||||.-++..   .             ....+..-+++++....+...     ..-.+..+|++|+
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-----~~rhyahVDcPGH   85 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-----ANRHYAHVDCPGH   85 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-----CCceEEeccCCCh
Confidence            457889999999999999766542   1             111222334555444444433     3445667799999


Q ss_pred             chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC----CcccHHHHHHH
Q psy14768        303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD----RQVEINEIEAV  377 (452)
Q Consensus       303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~----~~~~~e~~~~~  377 (452)
                      ..|-..+.....+.|+.|||+.++++.-=|..+..+..  +      .-.+| +++++||+|+.+    -+.-..+++++
T Consensus        86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla--r------qvGvp~ivvflnK~Dmvdd~ellelVemEvreL  157 (394)
T COG0050          86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLA--R------QVGVPYIVVFLNKVDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh--h------hcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence            99988877777899999999999997544443332221  1      12465 677889999986    23445577888


Q ss_pred             HHHcCCC----EEEEecCCC
Q psy14768        378 CHQYNFM----SWIEVSSKE  393 (452)
Q Consensus       378 ~~~~~~~----~~~evSAkt  393 (452)
                      +..+++.    +++.-||+.
T Consensus       158 Ls~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         158 LSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHcCCCCCCcceeechhhh
Confidence            8888874    466667665

>KOG0097|consensus

Probab=98.31  E-value=7e-07  Score=76.06  Aligned_cols=55  Identities=29%  Similarity=0.637  Sum_probs=49.0

Q ss_pred             CCCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768        100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK  154 (452)
Q Consensus       100 ~~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (452)
                      ..|.++.++||.+||||.|||||||+++|..++|+.+...|||++|..+.+...+
T Consensus         3 ~~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg   57 (215)
T KOG0097|consen    3 AAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG   57 (215)
T ss_pred             CCccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC
Confidence            3567788999999999999999999999999999999999999999988766543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.31  E-value=7.2e-07  Score=90.81  Aligned_cols=77  Identities=19%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCCCCc-----------------
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQTPS-----------------  170 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  170 (452)
                      +|++|||+||||||||+|.++++.-+ +..+++-++|.-...+.-.++..++.++++.-..++                 
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~A  297 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEA  297 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999998888 889999999999999999999999888888753333                 


Q ss_pred             eeEEEEcCCCCCchh
Q psy14768        171 YLILITGDSTVGKTS  185 (452)
Q Consensus       171 ~~Il~vgD~~vGkTs  185 (452)
                      ..|++|.|+..+.+.
T Consensus       298 DlvL~v~D~~~~~~~  312 (454)
T COG0486         298 DLVLFVLDASQPLDK  312 (454)
T ss_pred             CEEEEEEeCCCCCch
Confidence            279999998876444

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.31  E-value=7.3e-07  Score=84.71  Aligned_cols=108  Identities=11%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             eeEEEEEEecCC--cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC
Q psy14768        290 RPVKLQIWDIAG--QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR  367 (452)
Q Consensus       290 ~~~~l~l~DtaG--~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~  367 (452)
                      -.+.++|+.|.|  |.+.     ....-+|.+++|.-..-+...|.++.-+.++.            =|+|+||.|....
T Consensus       120 aG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------------Di~vVNKaD~~gA  182 (266)
T PF03308_consen  120 AGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------------DIFVVNKADRPGA  182 (266)
T ss_dssp             TT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEEEEE--SHHHH
T ss_pred             cCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------------cEEEEeCCChHHH
Confidence            346777888865  5432     23467899999999888887777766444433            3789999996542


Q ss_pred             cccHHHHHHHHHHcC------CCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        368 QVEINEIEAVCHQYN------FMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       368 ~~~~e~~~~~~~~~~------~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      .....+++.......      .++.+.|||.++.+|+++++.|.+........
T Consensus       183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s  235 (266)
T PF03308_consen  183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES  235 (266)
T ss_dssp             HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            222333333333221      25689999999999999999998866655544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01858 NGP_1 NGP-1

Probab=98.30  E-value=1.7e-06  Score=77.12  Aligned_cols=89  Identities=15%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             hhhcCCCEEEEEEeCCChhhH--HHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSF--ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~--~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ..++++|++++|+|+.++...  ..+..++.   ..     ..++|+++|+||+|+.+..........+.+.+.+. .+.
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-----~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~-~~~   74 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-----KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTI-AFH   74 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-----cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEE-EEE
Confidence            357899999999999987432  22222222   11     23489999999999975221112222222222222 477


Q ss_pred             ecCCCCccHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i  408 (452)
                      +||+.+.|++++++.+....
T Consensus        75 iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          75 ASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eeccccccHHHHHHHHHHHH
Confidence            99999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0091|consensus

Probab=98.30  E-value=4.7e-07  Score=79.16  Aligned_cols=42  Identities=45%  Similarity=0.697  Sum_probs=37.8

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+.+++++|||+.||||||+++|.+.+|+.-..||||+||..
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffa   47 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFA   47 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHH
Confidence            467899999999999999999999999998888999888864

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=6.1e-06  Score=82.13  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=56.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee---------c----CCeeEEEEEEecCCcchh-
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------Y----GGRPVKLQIWDIAGQDRY-  305 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~---------~----~~~~~~l~l~DtaG~e~~-  305 (452)
                      .+++.|+|.||||||||.|.+..........|..+.+...-...++.         +    .-....+.|+|.||.-.- 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            36899999999999999999998655444445444433222222110         0    112356889999985321 


Q ss_pred             ---hhhhhh---hhcCCCEEEEEEeCCC
Q psy14768        306 ---ICMSRV---YYQNSDGCIIMFDLTN  327 (452)
Q Consensus       306 ---~~~~~~---~i~~ad~vIlV~D~t~  327 (452)
                         .-+-..   -++++|+++.|+|+.+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence               122233   3789999999999874

>KOG1486|consensus

Probab=98.28  E-value=5.2e-06  Score=77.75  Aligned_cols=163  Identities=15%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CMSRV  311 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~~~~  311 (452)
                      ...+|+++|.|.||||||+..+..-.........++.....-.+.+   ++.  .+++.|.||.-.-.       .....
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y---~ga--~IQllDLPGIieGAsqgkGRGRQvia  135 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY---NGA--NIQLLDLPGIIEGASQGKGRGRQVIA  135 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe---cCc--eEEEecCcccccccccCCCCCceEEE
Confidence            4578999999999999999887753322222233333343444444   454  46678999954321       11223


Q ss_pred             hhcCCCEEEEEEeCCChhhHH-HHHHHHHHHHhhh---------------------------------------------
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFE-SVVQWKHDLDSKC---------------------------------------------  345 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~-~~~~~~~~i~~~~---------------------------------------------  345 (452)
                      ..+-||.+++|.|++..+.-. -++.-++.+....                                             
T Consensus       136 vArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Na  215 (364)
T KOG1486|consen  136 VARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNA  215 (364)
T ss_pred             EeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccc
Confidence            467799999999998743211 1111111111100                                             


Q ss_pred             ----------------hhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        346 ----------------ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       346 ----------------~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                                      ......-++++.|-||+|.    ++.+++..++++.+   -+.+|+.-+.|++.+++.+-..+.
T Consensus       216 evl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  216 EVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             eEEEecCCChHHHHHHHhccceEEEEEEEeeccce----ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhc
Confidence                            0012234778888999984    56888888888766   467888889999999998887766


Q ss_pred             Hhhh
Q psy14768        410 CSKR  413 (452)
Q Consensus       410 ~~~~  413 (452)
                      -.+.
T Consensus       289 L~rv  292 (364)
T KOG1486|consen  289 LVRV  292 (364)
T ss_pred             eEEE
Confidence            5443

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.27  E-value=9e-07  Score=78.74  Aligned_cols=43  Identities=30%  Similarity=0.747  Sum_probs=38.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||+++|++|||||||++||++++|...+.+|+|.++..+.+.
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~   43 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS   43 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence            4899999999999999999999999999999999998766544

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.27  E-value=1.2e-06  Score=78.68  Aligned_cols=45  Identities=33%  Similarity=0.690  Sum_probs=40.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +.+||++||++|||||||++||.+..|...+.+|+|.++....+.
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~   46 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIE   46 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEE
Confidence            458999999999999999999999999999999999888665543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.25  E-value=7.2e-07  Score=83.17  Aligned_cols=43  Identities=37%  Similarity=0.526  Sum_probs=38.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||++||+++||||||++||+++.|...+.+|+|.++..+.+.
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~   43 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHT   43 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEE
Confidence            4899999999999999999999999989999999888766654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04127 Rab27A Rab27a subfamily

Probab=98.25  E-value=1.3e-06  Score=79.26  Aligned_cols=46  Identities=41%  Similarity=0.728  Sum_probs=40.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+.+||++||++|||||||+++|.+..|...+.+|+|.++....+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~   47 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVV   47 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEE
Confidence            3568999999999999999999999999999999999888765543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.25  E-value=2.9e-07  Score=89.69  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             CcEEEEEECCCCCC-CcccHHHHHHHH-HHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        353 LPCLLLASKCDLPD-RQVEINEIEAVC-HQYNFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       353 ~piilV~NK~Dl~~-~~~~~e~~~~~~-~~~~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      .+-++|+||+|+.. .....+...+.. ......+++.+||++|.|++++++|+...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            56799999999975 122233333333 33445668999999999999999999763

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.23  E-value=4.5e-06  Score=74.29  Aligned_cols=84  Identities=15%  Similarity=0.032  Sum_probs=55.6

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHH-HHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKH-DLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~-~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|+|+.++.+..+.  ++. ...      ...++|+++|+||+|+.......+....+... ....++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~------~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~-~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLI------KEKGKKLILVLNKADLVPKEVLRKWLAYLRHS-YPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHH------hcCCCCEEEEEechhcCCHHHHHHHHHHHHhh-CCceEEEEeccCCc
Confidence            789999999988665532  222 111      12458999999999996421111112223223 23447999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRII  409 (452)
Q Consensus       396 nv~~lf~~i~~~i~  409 (452)
                      +++++++.+.+...
T Consensus        72 gi~~L~~~i~~~~~   85 (155)
T cd01849          72 GIEKKESAFTKQTN   85 (155)
T ss_pred             ChhhHHHHHHHHhH
Confidence            99999999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.22  E-value=4.6e-06  Score=75.76  Aligned_cols=54  Identities=15%  Similarity=0.146  Sum_probs=41.3

Q ss_pred             EEEEEECCCCCC-CcccHHHHHHHHHHc-CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        355 CLLLASKCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       355 iilV~NK~Dl~~-~~~~~e~~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      =++|+||.||.. ...+.+...+-+++. +-.+|+++|+++|+|+++++.++....
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            379999999987 444555555555554 445699999999999999999987654

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.22  E-value=1.4e-06  Score=79.17  Aligned_cols=38  Identities=37%  Similarity=0.625  Sum_probs=35.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      +||++||++|||||||++||+++.|...|.||++.++.
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~   39 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA   39 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE
Confidence            69999999999999999999999998899999987775

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01868 Rab11_like Rab11-like

Probab=98.22  E-value=1.7e-06  Score=77.18  Aligned_cols=45  Identities=40%  Similarity=0.712  Sum_probs=40.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +.+||++||++|||||||+++|.++.|...+.+++|.++..+.+.
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   46 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQ   46 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE
Confidence            358999999999999999999999999988999999888766654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.22  E-value=6.1e-07  Score=78.16  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCC---CCCCCCCCCCceeEEEEcCCCCCchh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP---YGTFSPIQTPSYLILITGDSTVGKTS  185 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Il~vgD~~vGkTs  185 (452)
                      ||++||++|||||||+|||++..+.  +.+|++.++..+.++..+.....   .............+++|.|...+.+.
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~   78 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYNDGAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESR   78 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEcCeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcC
Confidence            8999999999999999999998774  67788777765444333211000   00000011244567777777666554

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04110 Rab35 Rab35 subfamily

Probab=98.21  E-value=1.9e-06  Score=79.96  Aligned_cols=46  Identities=41%  Similarity=0.768  Sum_probs=40.5

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++.+||++||++|||||||+++|.+..|...+.+|+|.++....+.
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~   49 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE   49 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEE
Confidence            4568999999999999999999999999988999999888765544

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.21  E-value=2e-06  Score=81.22  Aligned_cols=45  Identities=27%  Similarity=0.570  Sum_probs=40.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ...+||++||++|||||||++||+.+.|...+.+|+|.++....+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~   55 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF   55 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEE
Confidence            345899999999999999999999999999999999998876554

>PLN03110 Rab GTPase; Provisional

Probab=98.18  E-value=2.7e-06  Score=80.10  Aligned_cols=47  Identities=40%  Similarity=0.696  Sum_probs=41.6

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ..+.+||++||++|||||||++||.+..|..++.+|+|.++..+.+.
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~   55 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ   55 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEE
Confidence            45678999999999999999999999999888999999998766654

>cd01865 Rab3 Rab3 subfamily

Probab=98.17  E-value=2e-06  Score=76.98  Aligned_cols=42  Identities=40%  Similarity=0.813  Sum_probs=37.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||+++|++|||||||++||.+++|...+.+|+|.++....+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~   43 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV   43 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence            799999999999999999999999998899999888765554

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04109 Rab28 Rab28 subfamily

Probab=98.17  E-value=1.8e-06  Score=81.27  Aligned_cols=43  Identities=44%  Similarity=0.780  Sum_probs=38.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||+|||++|||||||++||++..|...|.+|+|.++..+.+.
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~   43 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVT   43 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEE
Confidence            4899999999999999999999999999999999988665543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=98.17  E-value=2.5e-06  Score=76.42  Aligned_cols=43  Identities=35%  Similarity=0.807  Sum_probs=38.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      .+||++||++|||||||++||.+++|...+.+|+|.++..+.+
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~   44 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII   44 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEE
Confidence            4899999999999999999999999998889999988876544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.16  E-value=7.4e-06  Score=80.23  Aligned_cols=115  Identities=17%  Similarity=0.306  Sum_probs=68.1

Q ss_pred             cccEEEeeecccCCcceeeecccccccccc----------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-----
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNY----------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-----  304 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~----------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-----  304 (452)
                      .++|.++|.+|+|||||+|.|++.......          ..+.........+.-   ++..+.+.++||+|.-.     
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e---~~~~l~LtiiDTpGfGd~i~n~   80 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE---NGVKLNLTIIDTPGFGDNIDNS   80 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE---TCEEEEEEEEEEC-CSSSSTHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc---CCcceEEEEEeCCCccccccch
Confidence            478999999999999999999985544332          122333333333333   67788999999998211     


Q ss_pred             -------------hhhhhh--h-----h--hcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        305 -------------YICMSR--V-----Y--YQNSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       305 -------------~~~~~~--~-----~--i~~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                                   |.....  .     .  =.+.|++|++++.+. +.+-.|++ .+..+...        +.+|-|+.|
T Consensus        81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~~--------vNvIPvIaK  151 (281)
T PF00735_consen   81 DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSKR--------VNVIPVIAK  151 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTTT--------SEEEEEEST
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhccc--------ccEEeEEec
Confidence                         111000  0     0  124689999999874 33334442 45555554        789999999


Q ss_pred             CCCCC
Q psy14768        362 CDLPD  366 (452)
Q Consensus       362 ~Dl~~  366 (452)
                      .|...
T Consensus       152 aD~lt  156 (281)
T PF00735_consen  152 ADTLT  156 (281)
T ss_dssp             GGGS-
T ss_pred             ccccC
Confidence            99864

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.15  E-value=3e-06  Score=75.78  Aligned_cols=44  Identities=36%  Similarity=0.769  Sum_probs=38.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+||+++|++|||||||++||+++.|...+.+|+|.++..+.+.
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~   45 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE   45 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence            48999999999999999999999999888899998887765543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.15  E-value=2.4e-06  Score=77.23  Aligned_cols=41  Identities=44%  Similarity=0.811  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ||++||++|||||||++||+++.|..+|.+|++.++..+.+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~   42 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERF   42 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence            79999999999999999999999999999999988865443

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01866 Rab2 Rab2 subfamily

Probab=98.13  E-value=3.4e-06  Score=75.84  Aligned_cols=47  Identities=28%  Similarity=0.590  Sum_probs=40.2

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ...+||++||++|||||||+++|+..++...+.+++|.++....+..
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~   48 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI   48 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE
Confidence            34589999999999999999999999998888889988887655443

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01875 RhoG RhoG subfamily

Probab=98.13  E-value=3.2e-06  Score=77.94  Aligned_cols=83  Identities=31%  Similarity=0.508  Sum_probs=60.1

Q ss_pred             ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccEE
Q psy14768        170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPIL  244 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI~  244 (452)
                      .++|++|||.+||||+|+.+|..+.|.+.+.++++..+...+    .+++..+.+.+||+     +..+.+..+....++
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~----~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~   78 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT----AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF   78 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEE----EECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence            479999999999999999999999999999999987664433    35688899999999     333434444445555


Q ss_pred             EeeecccCCcce
Q psy14768        245 ITGDSTVGKTSY  256 (452)
Q Consensus       245 ivG~~nvGKSSL  256 (452)
                      ++=-.-.-+.||
T Consensus        79 ilvydit~~~Sf   90 (191)
T cd01875          79 IICFSIASPSSY   90 (191)
T ss_pred             EEEEECCCHHHH
Confidence            544333334443

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04116 Rab9 Rab9 subfamily

Probab=98.13  E-value=3.5e-06  Score=75.62  Aligned_cols=45  Identities=40%  Similarity=0.696  Sum_probs=39.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ..+||+++|++|||||||++||+++.|...+.+++|.++..+.+.
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE   48 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE
Confidence            468999999999999999999999999988889999887655443

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG4252|consensus

Probab=98.12  E-value=1.5e-06  Score=77.12  Aligned_cols=53  Identities=32%  Similarity=0.665  Sum_probs=46.1

Q ss_pred             CCCCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768         99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus        99 ~~~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+.+.+..+|++|||..+||||+|+.|||.+-|...|.-|||+||.++.+.
T Consensus        11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~   63 (246)
T KOG4252|consen   11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIK   63 (246)
T ss_pred             CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHH
Confidence            34455666679999999999999999999999999999999999999876643

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.12  E-value=5.8e-06  Score=72.43  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHH--HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFES--VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~--~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~  387 (452)
                      ...++++|++++|+|+.++.+.++  +..|+...        ..++|+++|+||+|+.+.. ......++.+..+. .++
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~-~ii   75 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DPRKKNILLLNKADLLTEE-QRKAWAEYFKKEGI-VVV   75 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cCCCcEEEEEechhcCCHH-HHHHHHHHHHhcCC-eEE
Confidence            356789999999999999876553  33333322        1358999999999996521 12233444555554 489


Q ss_pred             EecCCCCcc
Q psy14768        388 EVSSKEHLM  396 (452)
Q Consensus       388 evSAktg~n  396 (452)
                      ++||+++.+
T Consensus        76 ~iSa~~~~~   84 (141)
T cd01857          76 FFSALKENA   84 (141)
T ss_pred             EEEecCCCc
Confidence            999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01864 Rab19 Rab19 subfamily

Probab=98.12  E-value=3.7e-06  Score=75.13  Aligned_cols=46  Identities=48%  Similarity=0.712  Sum_probs=40.1

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      +.+||++||++|||||||++||....|...+.++++.++..+.+..
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~   47 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI   47 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE
Confidence            4689999999999999999999999999888899988887665543

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04111 Rab39 Rab39 subfamily

Probab=98.12  E-value=3.1e-06  Score=79.44  Aligned_cols=44  Identities=43%  Similarity=0.782  Sum_probs=39.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+||++||++|||||||+++|+++.|...+.+|+|.++..+.+.
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~   45 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIE   45 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEE
Confidence            48999999999999999999999999988889999888766554

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.11  E-value=2.8e-06  Score=76.94  Aligned_cols=38  Identities=26%  Similarity=0.488  Sum_probs=35.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      +||++||++|||||||++||+++.|...+.+|++..+.
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~   40 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK   40 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE
Confidence            79999999999999999999999999889999986664

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.11  E-value=3.2e-06  Score=76.02  Aligned_cols=42  Identities=29%  Similarity=0.600  Sum_probs=37.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||+++|++|||||||++||+.+.|...+.+|++.++....+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~   42 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDF   42 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEE
Confidence            489999999999999999999999988899999888765544

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04124 RabL2 RabL2 subfamily

Probab=98.10  E-value=2.5e-06  Score=76.12  Aligned_cols=39  Identities=28%  Similarity=0.527  Sum_probs=33.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +||++||++|||||||++||+++.|...+.++++.++..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~   39 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYK   39 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEE
Confidence            489999999999999999999999987777777665543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04128 Spg1 Spg1p

Probab=98.09  E-value=3.5e-06  Score=77.14  Aligned_cols=56  Identities=34%  Similarity=0.692  Sum_probs=49.4

Q ss_pred             eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      ++|+++||.+||||+|+.+|..+.|..++.++++.++..+.+   .+++..+.+.+||+
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i---~~~~~~~~l~iwDt   56 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTI---SIRGTEITFSIWDL   56 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEE---EECCEEEEEEEEeC
Confidence            479999999999999999999999999999999988876555   34577889999998

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK15494 era GTPase Era; Provisional

Probab=98.09  E-value=7.8e-06  Score=82.36  Aligned_cols=28  Identities=18%  Similarity=0.457  Sum_probs=25.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +.++|++||++|||||||+|+|++.+++
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~   78 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS   78 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCcee
Confidence            4579999999999999999999999886

>cd04117 Rab15 Rab15 subfamily

Probab=98.09  E-value=3.5e-06  Score=75.31  Aligned_cols=42  Identities=43%  Similarity=0.725  Sum_probs=37.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||++||++|||||||++||.++.|...+.+|+|.++..+.+
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~   42 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTI   42 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence            489999999999999999999999998899999988765443

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04133 Rop_like Rop subfamily

Probab=98.09  E-value=5.6e-06  Score=75.47  Aligned_cols=84  Identities=30%  Similarity=0.508  Sum_probs=63.4

Q ss_pred             eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccEEE
Q psy14768        171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPILI  245 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI~i  245 (452)
                      ++|+++||.+||||+|+.+|+.+.|..++.++++..+...+    .+++..+.+.+||+     +..+....+.....++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~----~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i   77 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   77 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEE----EECCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence            58999999999999999999999999999999987765433    34678899999999     3334444455556666


Q ss_pred             eeecccCCcceee
Q psy14768        246 TGDSTVGKTSYVQ  258 (452)
Q Consensus       246 vG~~nvGKSSLin  258 (452)
                      +=-.-..+.||-+
T Consensus        78 lvyd~~~~~Sf~~   90 (176)
T cd04133          78 LAFSLISRASYEN   90 (176)
T ss_pred             EEEEcCCHHHHHH
Confidence            6555555666644

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PLN03108 Rab family protein; Provisional

Probab=98.08  E-value=4.9e-06  Score=77.98  Aligned_cols=46  Identities=28%  Similarity=0.618  Sum_probs=40.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++.+||+|||++|||||||+++|++..|...+.+|++.++....+.
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~   49 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT   49 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEE
Confidence            3568999999999999999999999999988889999888765443

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.08  E-value=3.4e-06  Score=74.81  Aligned_cols=42  Identities=45%  Similarity=0.869  Sum_probs=37.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||++||++|||||||+++|+++.|...+.+|++.++....+
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~   42 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQI   42 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEE
Confidence            489999999999999999999999998899999888865443

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.08  E-value=3.6e-06  Score=74.30  Aligned_cols=37  Identities=32%  Similarity=0.670  Sum_probs=33.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +||+++|++|||||||++||+++.|...+.+|++..+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~   38 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY   38 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE
Confidence            6899999999999999999999999888888886554

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG1159 Era GTPase [General function prediction only]

Probab=98.08  E-value=2.6e-06  Score=82.16  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=24.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      --|+|||+||||||||+|++++.+.+
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~Kis   32 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKIS   32 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceE
Confidence            45999999999999999999998887

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.07  E-value=3.8e-06  Score=75.44  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=32.4

Q ss_pred             EEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      |++||++|||||||++||+++.|...+.+|+|.++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~   36 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS   36 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce
Confidence            79999999999999999999999888999998765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00369 Ras-like protein; Provisional

Probab=98.05  E-value=4.6e-06  Score=76.64  Aligned_cols=38  Identities=34%  Similarity=0.706  Sum_probs=35.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      +||++||++|||||||++||++..|...+.+|++.++.
T Consensus         6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~   43 (189)
T PTZ00369          6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR   43 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE
Confidence            89999999999999999999999998889999887664

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.05  E-value=4.9e-06  Score=73.89  Aligned_cols=42  Identities=45%  Similarity=0.740  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ||++||+++||||||+++|.++.|...+.+|+|.++..+.+.
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~   42 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVS   42 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccc
Confidence            899999999999999999999999999999999888776654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04125 RabA_like RabA-like subfamily

Probab=98.04  E-value=4.7e-06  Score=76.37  Aligned_cols=43  Identities=40%  Similarity=0.745  Sum_probs=37.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||+++|++|||||||++||.+..|...+.+|+|.++..+.+.
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~   43 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVY   43 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE
Confidence            4899999999999999999999999888999999887665543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.04  E-value=0.00016  Score=71.72  Aligned_cols=161  Identities=15%  Similarity=0.166  Sum_probs=98.8

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCC--------------cceeeeEEEEEEee--------e--------
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN--------------TVGVDFSTKLLSHK--------K--------  286 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~--------------t~~~d~~~~~i~~~--------~--------  286 (452)
                      ....+.+...|.-+.|||||+-.|...+.....-.              +..-+.....+-+.        .        
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            34568899999999999999999885443322111              11111111111110        0        


Q ss_pred             --cCCeeEEEEEEecCCcchhhh--hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        287 --YGGRPVKLQIWDIAGQDRYIC--MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       287 --~~~~~~~l~l~DtaG~e~~~~--~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                        .+.....+.|+||.|+|.|-.  ++-.+=.+.|-.+|++.++++.+--.-+.+.-.+.        -..|+|+|++|+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--------~~lPviVvvTK~  265 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA--------MELPVIVVVTKI  265 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh--------hcCCEEEEEEec
Confidence              011113467889999998864  33445567899999999999876544333333333        248999999999


Q ss_pred             CCCC---CcccHHHHHHHHHHc------------------------CCCEEEEecCCCCccHHHHHHHHH
Q psy14768        363 DLPD---RQVEINEIEAVCHQY------------------------NFMSWIEVSSKEHLMIEDSMNFLV  405 (452)
Q Consensus       363 Dl~~---~~~~~e~~~~~~~~~------------------------~~~~~~evSAktg~nv~~lf~~i~  405 (452)
                      |+..   .+...+++..+.+..                        +..|+|++|+.+|++++-+.+.+.
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            9976   222233333333221                        245689999999999876655444

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.04  E-value=4.9e-06  Score=76.01  Aligned_cols=39  Identities=38%  Similarity=0.552  Sum_probs=35.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +||+++|++|||||||+++|+++.|...+.+|++.++..
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~   39 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT   39 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE
Confidence            489999999999999999999999998899999877654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=98.04  E-value=5e-06  Score=74.12  Aligned_cols=38  Identities=32%  Similarity=0.633  Sum_probs=34.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      +||+++|++|||||||++||+.+.|...+.+|++..+.
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~   39 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR   39 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE
Confidence            68999999999999999999999998888899876653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04118 Rab24 Rab24 subfamily

Probab=98.04  E-value=5.1e-06  Score=76.38  Aligned_cols=42  Identities=40%  Similarity=0.805  Sum_probs=36.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCC-CCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~-~~~~~~~~~~~~~~~  150 (452)
                      +||++||++|||||||++||++++|.. .|.+|+|.++..+.+
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~   43 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRM   43 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEE
Confidence            489999999999999999999999984 688999888765443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0093|consensus

Probab=98.03  E-value=6.9e-06  Score=70.75  Aligned_cols=53  Identities=32%  Similarity=0.649  Sum_probs=46.7

Q ss_pred             CCCCCCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768         99 EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus        99 ~~~~~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++.+.+-++.+|++|+|++.||||+++.||++..|...+..|+|++|..+.+-
T Consensus        12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvy   64 (193)
T KOG0093|consen   12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVY   64 (193)
T ss_pred             ccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEee
Confidence            34445668889999999999999999999999999999999999999987643

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.03  E-value=4.4e-06  Score=79.59  Aligned_cols=85  Identities=18%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeecc-----ccCCCCCCCcccE
Q psy14768        169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY-----CTLSPIQIPTYPI  243 (452)
Q Consensus       169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~-----~~l~~~~~~~~kI  243 (452)
                      ..++|++|||.+||||+|+.+|+.+.|...+.++++.++... +   .+++..+.+.+||+.     ..+.+..+....+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~-i---~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAG-L---ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEE-E---EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            347999999999999999999999999999999998877543 2   356888999999993     3333444555666


Q ss_pred             EEeeecccCCccee
Q psy14768        244 LITGDSTVGKTSYV  257 (452)
Q Consensus       244 ~ivG~~nvGKSSLi  257 (452)
                      +++=..-+-+.||-
T Consensus        88 vIlVyDit~~~Sf~  101 (232)
T cd04174          88 VLLCFDISRPETVD  101 (232)
T ss_pred             EEEEEECCChHHHH
Confidence            66655555566653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01862 Rab7 Rab7 subfamily

Probab=98.03  E-value=5.6e-06  Score=74.11  Aligned_cols=43  Identities=49%  Similarity=0.855  Sum_probs=37.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||+++|++|||||||++||.+..+...+.++++.++..+.+.
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~   43 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT   43 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEE
Confidence            4899999999999999999999999888889998887665543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.01  E-value=9.5e-06  Score=74.24  Aligned_cols=81  Identities=11%  Similarity=0.049  Sum_probs=47.3

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhcc-CC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC------------------
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNK-FL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ------------------  167 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  167 (452)
                      ..-|+++||+|||||||+|.+++++ .+ ..-.|+.++....-++... +.+-+....+.+.                  
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~  102 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE  102 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence            4579999999999999999999966 33 4444554433332222221 1111122222221                  


Q ss_pred             --CCceeEEEEcCCCCCchhhhhh
Q psy14768        168 --TPSYLILITGDSTVGKTSYVQG  189 (452)
Q Consensus       168 --~~~~~Il~vgD~~vGkTsl~~r  189 (452)
                        ...-.+++|.|++.+.+-++..
T Consensus       103 ~R~~L~~vvlliD~r~~~~~~D~e  126 (200)
T COG0218         103 KRANLKGVVLLIDARHPPKDLDRE  126 (200)
T ss_pred             hchhheEEEEEEECCCCCcHHHHH
Confidence              1112577888888888876554

>cd04120 Rab12 Rab12 subfamily

Probab=98.01  E-value=4.5e-06  Score=77.88  Aligned_cols=55  Identities=40%  Similarity=0.764  Sum_probs=49.0

Q ss_pred             eEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       172 ~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      .|++|||.+||||+|+.+|+.+.|...+.++++.+|..+.+   .+++..+.+.+||+
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i---~~~~~~v~l~iwDt   56 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTV---ELRGKKIRLQIWDT   56 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEE---EECCEEEEEEEEeC
Confidence            58999999999999999999999999999999998877665   34577899999998

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.01  E-value=5.1e-06  Score=73.80  Aligned_cols=38  Identities=29%  Similarity=0.634  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      +||+++|++|||||||++||++..|...+.+|++..+.
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~   40 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT   40 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE
Confidence            79999999999999999999999988888888875543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04136 Rap_like Rap-like subfamily

Probab=98.01  E-value=7.3e-06  Score=72.69  Aligned_cols=34  Identities=35%  Similarity=0.685  Sum_probs=31.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      +||+++|++|||||||++||+++.|...+.+|++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~   35 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE   35 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh
Confidence            6999999999999999999999999888888886

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.00  E-value=7.4e-06  Score=73.75  Aligned_cols=45  Identities=40%  Similarity=0.699  Sum_probs=39.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .+||++||++|||||||++||++..|...+.++++.++..+.+..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~   46 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI   46 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE
Confidence            379999999999999999999999999888999988877655443

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.00  E-value=3.7e-05  Score=71.81  Aligned_cols=77  Identities=16%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             EEEEEEec-CCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCccc
Q psy14768        292 VKLQIWDI-AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVE  370 (452)
Q Consensus       292 ~~l~l~Dt-aG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~  370 (452)
                      ..+.++|| ||.|.|..   ...+.+|.+|+|+|.+- .++...+.........      .-+++.+|+||+|-.     
T Consensus       134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el------g~k~i~~V~NKv~e~-----  198 (255)
T COG3640         134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL------GIKRIFVVLNKVDEE-----  198 (255)
T ss_pred             CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh------CCceEEEEEeeccch-----
Confidence            45678898 78888763   45679999999999873 4444443333322222      127899999999843     


Q ss_pred             HHHHHHHHHHcCC
Q psy14768        371 INEIEAVCHQYNF  383 (452)
Q Consensus       371 ~e~~~~~~~~~~~  383 (452)
                      .+.........+.
T Consensus       199 e~~~~~~~~~~~~  211 (255)
T COG3640         199 EELLRELAEELGL  211 (255)
T ss_pred             hHHHHhhhhccCC
Confidence            3344444444443

>cd01861 Rab6 Rab6 subfamily

Probab=97.99  E-value=7.3e-06  Score=72.60  Aligned_cols=44  Identities=36%  Similarity=0.701  Sum_probs=39.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      +||+++|++|||||||++++.+..+...+.++.+.++..+.+..
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   44 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL   44 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE
Confidence            38999999999999999999999998888999998887766654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG2486|consensus

Probab=97.99  E-value=6.1e-06  Score=78.58  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=88.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccC-CcceeeeEEEEEEeeecCCeeEEEEEEecCCc----------chhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ----------DRYI  306 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~----------e~~~  306 (452)
                      .....+++.|.+|||||+|+|.++....+.... +..|.   +..+..+   .-...+.++|.+|.          +.+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~---Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~  207 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK---TQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWD  207 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc---ceeeeee---eccceEEEEecCCcccccCCccCcchHh
Confidence            345889999999999999999998744442222 23332   2222221   12235678899982          2233


Q ss_pred             hhhhhhhcCC---CEEEEEEeCCChhhHHHH--HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--C---cccHHHHHH
Q psy14768        307 CMSRVYYQNS---DGCIIMFDLTNRKSFESV--VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--R---QVEINEIEA  376 (452)
Q Consensus       307 ~~~~~~i~~a---d~vIlV~D~t~~~S~~~~--~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~---~~~~e~~~~  376 (452)
                      .+...|+.+-   =-+++++|++-+..--|.  ..|+.          ..++|+.+|.||+|...  .   .-....+..
T Consensus       208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g----------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~  277 (320)
T KOG2486|consen  208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG----------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI  277 (320)
T ss_pred             HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh----------hcCCCeEEeeehhhhhhhccccccCcccccee
Confidence            4444444332   245566687765322222  22332          23599999999999753  0   001111111


Q ss_pred             ----HHHHc--CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        377 ----VCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       377 ----~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                          +.+..  .-.+|+.+|+.++.++++++-.+.+.
T Consensus       278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence                11111  12348899999999999887766553

>cd01856 YlqF YlqF

Probab=97.99  E-value=1.9e-05  Score=71.47  Aligned_cols=91  Identities=12%  Similarity=-0.000  Sum_probs=60.3

Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEE
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~  386 (452)
                      ......+++||++++|+|++++....+.. +...   .      .++|+++|+||+|+.+... .....++.+..+ ..+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~---~------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~-~~v   78 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKI---L------GNKPRIIVLNKADLADPKK-TKKWLKYFESKG-EKV   78 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhH---h------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcC-CeE
Confidence            33456789999999999998775433221 1111   1      2379999999999964211 111112222323 347


Q ss_pred             EEecCCCCccHHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      +.+||+++.+++++...+...+.
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHHH
Confidence            99999999999999999888764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.98  E-value=2e-05  Score=81.05  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=87.4

Q ss_pred             eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      ....+.++|++||+..+.-|..++.++++||+|+++++..       ....+...+..++..++.....+.|+||++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4567899999999999999999999999999999987642       234555666666666666677899999999999


Q ss_pred             CCCC-----------------Cc--ccHHHHHHHHHHc-----------CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        363 DLPD-----------------RQ--VEINEIEAVCHQY-----------NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       363 Dl~~-----------------~~--~~~e~~~~~~~~~-----------~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      |+..                 ..  ...+.+..+....           ....+++|+|.+..++..+|..+.+.|
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9732                 01  2344444444321           112357999999999999999987754

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd04149 Arf6 Arf6 subfamily

Probab=97.98  E-value=6.8e-06  Score=74.11  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=33.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||+++|.+|||||||++||..+.|. .+.+|+|.++..
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~   47 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET   47 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE
Confidence            379999999999999999999988875 578899887753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.97  E-value=2e-05  Score=76.04  Aligned_cols=108  Identities=10%  Similarity=0.067  Sum_probs=70.0

Q ss_pred             eeEEEEEEecCC--cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC
Q psy14768        290 RPVKLQIWDIAG--QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR  367 (452)
Q Consensus       290 ~~~~l~l~DtaG--~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~  367 (452)
                      -.+.++|+.|.|  |.+     .....-+|.+++|.=..-+...|-++.-+.++.            =|+|+||.|....
T Consensus       142 aG~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------------Di~vINKaD~~~A  204 (323)
T COG1703         142 AGYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA------------DIIVINKADRKGA  204 (323)
T ss_pred             cCCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh------------heeeEeccChhhH
Confidence            456777888875  322     223456899999887777777777766444443            3689999996541


Q ss_pred             cccHHHHHH---HH----HHc-CCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        368 QVEINEIEA---VC----HQY-NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       368 ~~~~e~~~~---~~----~~~-~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      +....+...   +.    ... ..++.+.|||.+|+|++++++.+.+........
T Consensus       205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            111111111   11    111 234579999999999999999998877665544

>cd04121 Rab40 Rab40 subfamily

Probab=97.96  E-value=7e-06  Score=75.74  Aligned_cols=57  Identities=33%  Similarity=0.592  Sum_probs=49.8

Q ss_pred             ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      .++|+++||.+||||+|+.+|..+.|...+.++++.++....+   .+++..+.+.+||+
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i---~~~~~~~~l~iwDt   62 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTI---LLDGRRVKLQLWDT   62 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEE---EECCEEEEEEEEeC
Confidence            4799999999999999999999999998888888888876655   34677899999998

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PLN00023 GTP-binding protein; Provisional

Probab=97.95  E-value=1.4e-05  Score=79.12  Aligned_cols=93  Identities=19%  Similarity=0.260  Sum_probs=65.7

Q ss_pred             CCCCCCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccc----------cCCccceeeeeec----
Q psy14768        164 SPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK----------YGGRPVKLQIWDI----  229 (452)
Q Consensus       164 ~~~~~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~----------id~~~~~l~i~d~----  229 (452)
                      +......+||++|||.+||||+|+.+|+.+.|...+.++++.++..+.+.+..          -++..+.++|||+    
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            33455568999999999999999999999999999999999888655443221          1235678999999    


Q ss_pred             -cccCCCCCCCcccEEEeeecccCCcce
Q psy14768        230 -YCTLSPIQIPTYPILITGDSTVGKTSY  256 (452)
Q Consensus       230 -~~~l~~~~~~~~kI~ivG~~nvGKSSL  256 (452)
                       +..+.+..+.....+|+=..-+.+.++
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SF  122 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTK  122 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHH
Confidence             333334445556655555444555555

>cd04140 ARHI_like ARHI subfamily

Probab=97.94  E-value=8e-06  Score=73.09  Aligned_cols=37  Identities=32%  Similarity=0.612  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +||++||++|||||||++||+++.|...+.+|++..+
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~   38 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY   38 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE
Confidence            6899999999999999999999999888888887555

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04126 Rab20 Rab20 subfamily

Probab=97.94  E-value=8.7e-06  Score=76.96  Aligned_cols=40  Identities=38%  Similarity=0.643  Sum_probs=34.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      +||+|||++|||||||++||+.+.|. .+.+|+|.++..+.
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~Tig~~~~~~~   40 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQ   40 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC-CCCCccceEEEEEE
Confidence            48999999999999999999999997 46889988876544

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04135 Tc10 TC10 subfamily

Probab=97.93  E-value=1.6e-05  Score=71.48  Aligned_cols=34  Identities=38%  Similarity=0.643  Sum_probs=30.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      +||+++|++|||||||+++|+++.|...+.++++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~   34 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF   34 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee
Confidence            4899999999999999999999999877777764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0448|consensus

Probab=97.93  E-value=3.3e-05  Score=81.57  Aligned_cols=148  Identities=14%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEE------------------------------------
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL------------------------------------  281 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~------------------------------------  281 (452)
                      ....||+|.|+.+.|||+++|+++.++..++...-++.-|....                                    
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            34689999999999999999999876655433222111110000                                    


Q ss_pred             -----EEeeecCC----eeEEEEEEecCCcch---hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcC
Q psy14768        282 -----LSHKKYGG----RPVKLQIWDIAGQDR---YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN  349 (452)
Q Consensus       282 -----i~~~~~~~----~~~~l~l~DtaG~e~---~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~  349 (452)
                           +.++.-++    -.-.+.++|.||..-   ..+-...+..++|++|||.++.+..+....+.+.. ..+      
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~-vs~------  259 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHK-VSE------  259 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHH-hhc------
Confidence                 00000001    001456778888542   23333566789999999999987665554433322 221      


Q ss_pred             CCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCC-------CEEEEecCCC
Q psy14768        350 GAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNF-------MSWIEVSSKE  393 (452)
Q Consensus       350 ~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~-------~~~~evSAkt  393 (452)
                       .+.-|.|+.||||... .+.-.+++..-..++..       ...|||||+.
T Consensus       260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence             1234778889999865 23333344333333332       2258999664

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.92  E-value=1e-05  Score=74.04  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||++||++|||||||++||..+.|. .+.+|+|.++..
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~~~~~~~   55 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVET   55 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCccccceEE
Confidence            379999999999999999999888886 477899877653

>cd04176 Rap2 Rap2 subgroup

Probab=97.92  E-value=1.2e-05  Score=71.43  Aligned_cols=34  Identities=32%  Similarity=0.692  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      +||+++|++|||||||++||+++.|...+.+|++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~   35 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE   35 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh
Confidence            6999999999999999999999999988888875

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=97.92  E-value=1.3e-05  Score=73.40  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      .+||+++|.+|||||||++||..+.|.. +.+|+|.++....+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~   44 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKV   44 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEe
Confidence            3799999999999999999999988874 47888877765544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.91  E-value=1.4e-05  Score=72.61  Aligned_cols=39  Identities=23%  Similarity=0.381  Sum_probs=33.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||+++|++|||||||++||..+.|. .+.+|+|.++..
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~   51 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET   51 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE
Confidence            489999999999999999999887775 578999887754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG1191|consensus

Probab=97.91  E-value=1e-05  Score=82.53  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=60.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC------------------CC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ------------------TP  169 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~  169 (452)
                      ++|+|||+||||||||+|.+..+.-+ +...++-++|--...+...++.....|++++-.                  +.
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~  348 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIER  348 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhh
Confidence            68999999999999999999998877 788888888887777777777766666666533                  22


Q ss_pred             ceeEEEEcCCCCCchh
Q psy14768        170 SYLILITGDSTVGKTS  185 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTs  185 (452)
                      +..|+||+|+..+-|.
T Consensus       349 advi~~vvda~~~~t~  364 (531)
T KOG1191|consen  349 ADVILLVVDAEESDTE  364 (531)
T ss_pred             cCEEEEEecccccccc
Confidence            3479999998776554

>PRK04213 GTP-binding protein; Provisional

Probab=97.90  E-value=1.5e-05  Score=73.86  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .++|+++|++|||||||+|++++..+...+.++++++.
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~   46 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP   46 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc
Confidence            47999999999999999999999888766666665543

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.90  E-value=1.2e-05  Score=71.64  Aligned_cols=37  Identities=22%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      +||+++|.+|||||||++||..+.|. .+.||+|.++.
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~   37 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE   37 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE
Confidence            48999999999999999999888887 57899987764

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.90  E-value=1.4e-05  Score=70.95  Aligned_cols=44  Identities=50%  Similarity=0.853  Sum_probs=38.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      +||+++|++|||||||+++|.+..+...+.++++.++....+..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~   44 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV   44 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE
Confidence            58999999999999999999999998888899988877655443

Rab GTPases are implicated in vesicle trafficking.

>cd04113 Rab4 Rab4 subfamily

Probab=97.89  E-value=1.4e-05  Score=70.85  Aligned_cols=42  Identities=38%  Similarity=0.820  Sum_probs=36.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||+++|++|||||||+++|.+..|...+.++++.++....+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~   42 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKII   42 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE
Confidence            489999999999999999999999988888998877765543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04157 Arl6 Arl6 subfamily

Probab=97.88  E-value=8.3e-06  Score=72.27  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC-CCCCcCccccCce
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFS  146 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~-~~~~~~~~~~~~~  146 (452)
                      +|++||++|||||||+++|.+..+ ...+.+|+|..+.
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~   38 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE   38 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE
Confidence            489999999999999999998764 5678899987654

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.88  E-value=1.9e-05  Score=71.10  Aligned_cols=38  Identities=29%  Similarity=0.526  Sum_probs=34.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .||+++|++|||||||+++|.++.|...|.+|++..+.
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~   39 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV   39 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE
Confidence            48999999999999999999999999889999876653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.88  E-value=1.8e-05  Score=70.28  Aligned_cols=44  Identities=41%  Similarity=0.729  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      +||+++|++|||||+|+|+|+++.+...+.++.|.++....+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~   45 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL   45 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE
Confidence            79999999999999999999999998778889887776655543

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04158 ARD1 ARD1 subfamily

Probab=97.87  E-value=1.7e-05  Score=71.38  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ||+++|.+|||||||++||.+..|. .+.+|+|.++.
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~   36 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE   36 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE
Confidence            6899999999999999999998776 58899887775

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PRK13796 GTPase YqeH; Provisional

Probab=97.87  E-value=6.7e-05  Score=76.36  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             hhhhhhhhhhcCCC-EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH----H
Q psy14768        304 RYICMSRVYYQNSD-GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV----C  378 (452)
Q Consensus       304 ~~~~~~~~~i~~ad-~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~----~  378 (452)
                      .|..+... +..+| .+++|+|+.+..     ..|...+.+..     .++|+++|+||.|+.......+.+.+|    .
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~  126 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA  126 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence            34443333 34455 999999998743     22444555431     257999999999997644444444444    4


Q ss_pred             HHcCCC--EEEEecCCCCccHHHHHHHHHHH
Q psy14768        379 HQYNFM--SWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       379 ~~~~~~--~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      +.+++.  .++++||+++.|++++++.+.+.
T Consensus       127 k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        127 KELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            555652  47999999999999999999764

>KOG0081|consensus

Probab=97.86  E-value=7.4e-07  Score=77.54  Aligned_cols=49  Identities=39%  Similarity=0.687  Sum_probs=44.8

Q ss_pred             CCcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       103 ~~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .++++++|.+.+||+||||||++.||.+++|....+.|||+||..+.+.
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvv   52 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVV   52 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEE
Confidence            3568889999999999999999999999999999999999999887654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=97.86  E-value=1.5e-05  Score=83.12  Aligned_cols=57  Identities=14%  Similarity=0.120  Sum_probs=41.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP  165 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (452)
                      +||+|+|+||||||||+|+|++..++ ....++.++++....+........+.++.+.
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~  261 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGI  261 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence            79999999999999999999987654 4455666777766666655544445555543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.86  E-value=2.4e-05  Score=70.54  Aligned_cols=33  Identities=36%  Similarity=0.650  Sum_probs=29.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV  141 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~  141 (452)
                      +||+++|++|||||||+++|.++.|..+|.+|+
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~   33 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA   33 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce
Confidence            589999999999999999999988887777775

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.85  E-value=1.3e-05  Score=70.21  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=34.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      |+|+|++|||||||++++.+..|..++.+|++.++..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~   38 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK   38 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE
Confidence            7899999999999999999999999999999888754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.85  E-value=1.6e-05  Score=70.75  Aligned_cols=42  Identities=48%  Similarity=0.710  Sum_probs=36.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc--cCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~--~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||++||++|||||||++++.++  .|..+|.+|+|.++..+.+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~   44 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEV   44 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEE
Confidence            48999999999999999999865  7888899999988765554

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=97.85  E-value=2.5e-05  Score=73.12  Aligned_cols=46  Identities=41%  Similarity=0.657  Sum_probs=37.7

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ....+||+|||++|||||||+++|+++.+. .+.+++|.++....+.
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~   56 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLT   56 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEE
Confidence            344589999999999999999999998885 6788888877655443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.84  E-value=2.1e-05  Score=73.87  Aligned_cols=44  Identities=30%  Similarity=0.600  Sum_probs=38.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ..+||+++|++|||||||++||+.+.|...|.+|+|.++....+
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~   51 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKF   51 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEE
Confidence            34899999999999999999999999998999999988866544

>cd01893 Miro1 Miro1 subfamily

Probab=97.83  E-value=2.2e-05  Score=70.32  Aligned_cols=31  Identities=35%  Similarity=0.682  Sum_probs=26.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKN  139 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~  139 (452)
                      +||++||++|||||||++||..++|...+..
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~   31 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR   31 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCC
Confidence            3899999999999999999999999755443

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.82  E-value=1.8e-05  Score=72.34  Aligned_cols=39  Identities=23%  Similarity=0.413  Sum_probs=33.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||+++|++|||||||++||..+.|. .+.||+|.++..
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~   55 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET   55 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE
Confidence            479999999999999999999988886 578999887653

>cd01863 Rab18 Rab18 subfamily

Probab=97.82  E-value=2.4e-05  Score=69.37  Aligned_cols=42  Identities=50%  Similarity=0.768  Sum_probs=36.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||+++|++|||||||+++|.+..+...+.++++.++....+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~   42 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTL   42 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEE
Confidence            589999999999999999999999987788999888765544

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.82  E-value=6.5e-05  Score=73.56  Aligned_cols=90  Identities=13%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ....++.+|++|+|+|+.++.+..+..  +..+.        .++|+++|+||+|+.+... .+...++.+..+. .+++
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l--------~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~~~-~vi~   82 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR--------GNKPRLIVLNKADLADPAV-TKQWLKYFEEKGI-KALA   82 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH--------CCCCEEEEEEccccCCHHH-HHHHHHHHHHcCC-eEEE
Confidence            356789999999999998875543321  11111        1389999999999964211 1111122233343 4799


Q ss_pred             ecCCCCccHHHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +||+++.+++++++.+.+.+.+
T Consensus        83 iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        83 INAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999988777644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04114 Rab30 Rab30 subfamily

Probab=97.81  E-value=3.4e-05  Score=68.92  Aligned_cols=46  Identities=39%  Similarity=0.624  Sum_probs=38.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+++|.+|||||||++++.+..+...+.++++.++....+.
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   50 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE   50 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEE
Confidence            3568999999999999999999999888877888888777655443

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=97.81  E-value=2.3e-05  Score=72.07  Aligned_cols=41  Identities=44%  Similarity=0.809  Sum_probs=35.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKL  149 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~  149 (452)
                      +||+|||++|||||||++||+...|. ..+.+|++.++..+.
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~   42 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKV   42 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEE
Confidence            48999999999999999999999987 478889888876544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.81  E-value=1.8e-05  Score=70.64  Aligned_cols=36  Identities=33%  Similarity=0.634  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ||++||++|||||||++||+.+.|..+|.++.+..+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~   36 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY   36 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc
Confidence            689999999999999999999999878888875444

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=97.81  E-value=2.3e-05  Score=74.10  Aligned_cols=43  Identities=21%  Similarity=0.419  Sum_probs=35.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~  151 (452)
                      +||++||++|||||||+++|+.+.|. ..+.++++.++..+.+.
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~   44 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVS   44 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEE
Confidence            48999999999999999999988887 77888887666554443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.81  E-value=1.5e-05  Score=80.63  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=33.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .++|+|||.+|||||||+|+|++..+.....+..++|+..+.+..
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~  233 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL  233 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe
Confidence            479999999999999999999998765444444445665555544

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.81  E-value=3.6e-05  Score=70.07  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..++|+|+|++|||||||+|++++..+...+.+++|...
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~   55 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQ   55 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcce
Confidence            347999999999999999999999876545555555443

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG1143|consensus

Probab=97.80  E-value=0.00017  Score=71.35  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             EEEEEEecCCcchhhhhhhhhhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc
Q psy14768        292 VKLQIWDIAGQDRYICMSRVYYQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV  369 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~~i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~  369 (452)
                      ..+.|+|.||+.+|.......+.  --|.++||+.+..+..+..-+.+. .+..       -++|+.++++|.|+.+++-
T Consensus       249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLg-l~~A-------L~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLG-LIAA-------LNIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHH-HHHH-------hCCCeEEEEEeeccccchh
Confidence            34678899999999765443332  358889999998876554433322 2222       2499999999999976322


Q ss_pred             c---HHHHHHHHHHc-------------------------CCCEEEEecCCCCccHHH
Q psy14768        370 E---INEIEAVCHQY-------------------------NFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       370 ~---~e~~~~~~~~~-------------------------~~~~~~evSAktg~nv~~  399 (452)
                      .   ..++..+..+.                         ++.++|-+|..+|++++-
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence            2   22222222222                         345679999999988763

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.79  E-value=2.3e-05  Score=69.67  Aligned_cols=35  Identities=37%  Similarity=0.690  Sum_probs=31.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCcccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV  143 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~  143 (452)
                      +||+++|++|||||||+++|++..|...+.+|++-
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~   35 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED   35 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh
Confidence            48999999999999999999999998888887753

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd00154 Rab Rab family

Probab=97.78  E-value=2.6e-05  Score=68.04  Aligned_cols=44  Identities=55%  Similarity=0.865  Sum_probs=38.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      +||+++|.+|||||||++++.+..+...+.+|.+.++....+..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~   44 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI   44 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE
Confidence            48999999999999999999999999888899888877665543

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04144 Ras2 Ras2 subfamily

Probab=97.78  E-value=2.1e-05  Score=72.29  Aligned_cols=36  Identities=33%  Similarity=0.650  Sum_probs=32.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ||++||++|||||||++||+.+.|...+.+|++..+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~   36 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY   36 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE
Confidence            689999999999999999999999988889987555

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.77  E-value=2.5e-05  Score=69.78  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV  141 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~  141 (452)
                      +||++||++|||||||++||+++.|...+.++.
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~   33 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG   33 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc
Confidence            489999999999999999999999986665543

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK11058 GTPase HflX; Provisional

Probab=97.77  E-value=2.7e-05  Score=80.75  Aligned_cols=57  Identities=9%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeecccc-CCCCCCCCCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY-GGRPYGTFSP  165 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  165 (452)
                      ++|+|||.+|||||||||++++..+.....+..++|.....+.+... .....|+.+.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~  255 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGF  255 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcc
Confidence            58999999999999999999998776545555566666655554332 3344555554

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.77  E-value=2.1e-05  Score=72.92  Aligned_cols=33  Identities=33%  Similarity=0.681  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      ||++||++|||||||++||++..|...+.+|++
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~   33 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE   33 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh
Confidence            689999999999999999999999877888874

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00436 era GTP-binding protein Era

Probab=97.77  E-value=3.6e-05  Score=75.05  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +|++||+||||||||+|++++.+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~   26 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKIS   26 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEe
Confidence            6899999999999999999998875

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.76  E-value=2.5e-05  Score=73.15  Aligned_cols=43  Identities=35%  Similarity=0.588  Sum_probs=38.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||+++|++|||||||++||.++.|...+.+|++..+......
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~   48 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIE   48 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEE
Confidence            8999999999999999999999999999999998777655543

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.76  E-value=1.6e-05  Score=71.52  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +|+++|.+|||||||+++|+++ |...+.+|+|...
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~   35 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP   35 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE
Confidence            4799999999999999999977 7778899998754

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.76  E-value=1.5e-05  Score=72.36  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=41.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      ..++++++|.||+|||||+|++.+.. ......++++.+.....  .   +   ..+.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~---~---~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--L---D---KKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--e---C---CCEEEEECcCC
Confidence            34789999999999999999999844 35566677766544332  2   2   14778899984

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd04154 Arl2 Arl2 subfamily

Probab=97.75  E-value=3.5e-05  Score=69.56  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=31.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|.++.+. .+.+|+|....
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~   51 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIK   51 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE
Confidence            379999999999999999999988554 67788875443

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01858 NGP_1 NGP-1

Probab=97.74  E-value=1.8e-05  Score=70.63  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=38.0

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      .+.++++|.||||||||+|++.+.. ......++++.+...  +..   + .  .+.++||||.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~---~-~--~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL---M-K--RIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc---C-C--CEEEEECcCC
Confidence            5678999999999999999999843 345555665544322  222   2 2  2668899994

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.74  E-value=0.00016  Score=71.80  Aligned_cols=114  Identities=18%  Similarity=0.360  Sum_probs=70.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccc----------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-----
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDN----------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-----  304 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~----------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-----  304 (452)
                      .+.|.++|.+|.|||||+|.|++......          ..+++........+.-   ++..+.+.++||+|-=.     
T Consensus        23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e---~~~~~~l~vIDtpGfGD~idNs   99 (373)
T COG5019          23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE---DGFHLNLTVIDTPGFGDFIDNS   99 (373)
T ss_pred             ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec---CCeEEEEEEeccCCcccccccc
Confidence            47889999999999999999997643322          2234444444444444   77788999999998211     


Q ss_pred             --------h-hhhhhhh------------hc--CCCEEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768        305 --------Y-ICMSRVY------------YQ--NSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLAS  360 (452)
Q Consensus       305 --------~-~~~~~~~------------i~--~ad~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~N  360 (452)
                              | ..+...|            +.  +.|++|+.+-.+ +.....+.. .+..+...        +-+|=|+-
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls~~--------vNlIPVI~  170 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLSKR--------VNLIPVIA  170 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHhcc--------cCeeeeee
Confidence                    0 0111111            11  368888888865 333333322 34444444        56777888


Q ss_pred             CCCCC
Q psy14768        361 KCDLP  365 (452)
Q Consensus       361 K~Dl~  365 (452)
                      |.|..
T Consensus       171 KaD~l  175 (373)
T COG5019         171 KADTL  175 (373)
T ss_pred             ccccC
Confidence            99974

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.74  E-value=5e-05  Score=68.89  Aligned_cols=55  Identities=33%  Similarity=0.617  Sum_probs=45.5

Q ss_pred             eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      ++|+++|+.+||||+|+.+|..+.|..++.+++...+... +   .+++..+.+.+||+
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~-~---~~~~~~~~l~i~Dt   56 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-V---MVDGKPVNLGLWDT   56 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE-E---EECCEEEEEEEEEC
Confidence            6899999999999999999999999999999886544332 2   24577788999998

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.73  E-value=9.2e-05  Score=68.63  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCCchHHHHH-HHhhcc-----CCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQ-GFVQNK-----FLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~-r~~~~~-----~~~~~~~~~~  142 (452)
                      +||++||++|||||||++ ||.++.     |..+|.||+|
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~   42 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVW   42 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCcee
Confidence            799999999999999996 665543     3455667764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=97.72  E-value=3.5e-05  Score=69.10  Aligned_cols=37  Identities=38%  Similarity=0.699  Sum_probs=33.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +||++||++|||||||+++|.++.|...+.+|++..+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~   38 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY   38 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE
Confidence            6899999999999999999999999888888887554

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04151 Arl1 Arl1 subfamily

Probab=97.72  E-value=2.1e-05  Score=69.71  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ||++||++|||||+|++++..+.+. .+.+|+|.++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~   36 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE   36 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE
Confidence            6899999999999999999888776 56788877654

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.71  E-value=2e-05  Score=68.99  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=37.4

Q ss_pred             cEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      +++++|.+|+|||||+|+++++... ....++.+.+.  ..+..   ++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~--~~~~~---~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHF--QTIFL---TP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccce--EEEEe---CC---CEEEEECCCc
Confidence            8999999999999999999986543 33334444433  33333   33   4689999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.71  E-value=2.7e-05  Score=68.96  Aligned_cols=37  Identities=19%  Similarity=0.415  Sum_probs=31.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +|+++|.+|||||||+++|.+..+. .+.+|+|.++..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~   37 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEM   37 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEE
Confidence            5899999999999999999999887 457888766543

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04134 Rho3 Rho3 subfamily

Probab=97.70  E-value=6.4e-05  Score=69.09  Aligned_cols=54  Identities=28%  Similarity=0.529  Sum_probs=45.5

Q ss_pred             eEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        172 LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       172 ~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      +|+++|+.++|||+|+.+|..+.|...+.+++...+...+    .+++..+.+.+||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i----~~~~~~~~l~i~Dt   55 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDI----FVDGLHIELSLWDT   55 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEE----EECCEEEEEEEEEC
Confidence            7999999999999999999999999888899877765433    24567788999998

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.70  E-value=0.00016  Score=71.24  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ....++.+|++|+|+|+.++.+.++.  ++..+..        ++|+++|+||+|+.+... .+...++.+..+. .++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~--------~kp~iiVlNK~DL~~~~~-~~~~~~~~~~~~~-~vi~   85 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSENP--MIDKIIG--------NKPRLLILNKSDLADPEV-TKKWIEYFEEQGI-KALA   85 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC--------CCCEEEEEEchhcCCHHH-HHHHHHHHHHcCC-eEEE
Confidence            35678999999999999887654331  1111111        389999999999964211 1112222233343 3799


Q ss_pred             ecCCCCccHHHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +||+++.+++++++.+...+.+
T Consensus        86 vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         86 INAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999988777644

>KOG0463|consensus

Probab=97.69  E-value=0.00051  Score=67.96  Aligned_cols=160  Identities=11%  Similarity=0.146  Sum_probs=89.9

Q ss_pred             CCCCCCCcccEEEeeecccCCcceeeeccccccc------------------cccCCcceeeeEE-----EEEEeee---
Q psy14768        233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL------------------DNYKNTVGVDFST-----KLLSHKK---  286 (452)
Q Consensus       233 l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~------------------~~~~~t~~~d~~~-----~~i~~~~---  286 (452)
                      ....+..+++++++|.-.+|||||+--+......                  ....+.+|.|+.-     ..+..+.   
T Consensus       126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg  205 (641)
T KOG0463|consen  126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG  205 (641)
T ss_pred             CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence            3344566799999999999999999877642211                  1111222222211     1111000   


Q ss_pred             --------cCCeeEEEEEEecCCcchhhhhhhhhh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE
Q psy14768        287 --------YGGRPVKLQIWDIAGQDRYICMSRVYY--QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL  356 (452)
Q Consensus       287 --------~~~~~~~l~l~DtaG~e~~~~~~~~~i--~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii  356 (452)
                              +.+....+.|+|.+|+|+|-...-.-+  .--|..+|++-+.-+.---.-+.+...+.-        ++|++
T Consensus       206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL--------~VPVf  277 (641)
T KOG0463|consen  206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL--------HVPVF  277 (641)
T ss_pred             CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh--------cCcEE
Confidence                    012223467889999999875432222  235777888877654211111222233333        39999


Q ss_pred             EEEECCCCCCCc---ccHHHHHHHHHHcC-------------------------CCEEEEecCCCCccHHHH
Q psy14768        357 LLASKCDLPDRQ---VEINEIEAVCHQYN-------------------------FMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       357 lV~NK~Dl~~~~---~~~e~~~~~~~~~~-------------------------~~~~~evSAktg~nv~~l  400 (452)
                      +|++|+|.....   .....+..+.+..+                         .+++|.+|-.+|+|+.-+
T Consensus       278 vVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  278 VVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             EEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            999999986522   22222333333221                         245799999999998643

>KOG3887|consensus

Probab=97.69  E-value=0.00036  Score=65.30  Aligned_cols=165  Identities=14%  Similarity=0.191  Sum_probs=96.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-hh--hhhhhhcCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-IC--MSRVYYQNS  316 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-~~--~~~~~i~~a  316 (452)
                      ..+|+++|..-+||||+..-........+   |.-.+... .+...+..+.-+.+++||.|||-.| ..  -....++.+
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTs-ki~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~  102 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTS-KITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV  102 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccC-cccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence            35699999999999998665443221111   11111111 1111111334577999999998643 22  235678999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccH----HHHHHHHHHcCCC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEI----NEIEAVCHQYNFM  384 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~----e~~~~~~~~~~~~  384 (452)
                      -+.|+|+|+.+. -.+.+..+...+.+.  +.-++++-+-+++.|.|-..        +.+..    +....-.......
T Consensus       103 gALifvIDaQdd-y~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vs  179 (347)
T KOG3887|consen  103 GALIFVIDAQDD-YMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVS  179 (347)
T ss_pred             CeEEEEEechHH-HHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEE
Confidence            999999999753 233444444444443  33567788899999999753        11111    1111111222222


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                       |+-+|-. .+.|.++|..+++.++..-.
T Consensus       180 -f~LTSIy-DHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  180 -FYLTSIY-DHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             -EEEeeec-chHHHHHHHHHHHHHhhhch
Confidence             5555554 67899999999988876544

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.68  E-value=7.8e-05  Score=68.44  Aligned_cols=39  Identities=28%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..++|+|||++|||||||+|++++.+|...+.++.|...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~   61 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQ   61 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcee
Confidence            457899999999999999999999876656666665443

>cd04171 SelB SelB subfamily

Probab=97.67  E-value=3.7e-05  Score=67.99  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc---cCCCCCcCccccCc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDF  145 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~---~~~~~~~~~~~~~~  145 (452)
                      -|+++|++|||||||+++|++.   .+..++.++.+++.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~   40 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDL   40 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEe
Confidence            4899999999999999999963   34334444443333

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04123 Rab21 Rab21 subfamily

Probab=97.67  E-value=5.1e-05  Score=66.87  Aligned_cols=41  Identities=37%  Similarity=0.616  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      +||+++|.+|||||||+++|++..+...+.++.+.++....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~   41 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKT   41 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEE
Confidence            48999999999999999999999988777777655554433

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0460|consensus

Probab=97.67  E-value=0.00019  Score=70.19  Aligned_cols=143  Identities=16%  Similarity=0.153  Sum_probs=93.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccc----------------cccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQ----------------NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~----------------~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ....+|.-+|.-.-|||||.-++..                ++..++...+++++........     ..-.+-=.|++|
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-----a~RhYaH~DCPG  126 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-----AKRHYAHTDCPG  126 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-----cccccccCCCCc
Confidence            3457788899999999999655441                1112233345565554444433     333455669999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----CcccHHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----RQVEINEIEAV  377 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----~~~~~e~~~~~  377 (452)
                      +..|-..+..-..+-|++|||+.++|+.--|.-+.++.. ++.      .-.-+++++||.|+.+    .+..+-+++++
T Consensus       127 HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~REl  199 (449)
T KOG0460|consen  127 HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQV------GVKHIVVFINKVDLVDDPEMLELVEMEIREL  199 (449)
T ss_pred             hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HHc------CCceEEEEEecccccCCHHHHHHHHHHHHHH
Confidence            999988776667788999999999998654544333221 221      1134888999999985    34455678888


Q ss_pred             HHHcCCC----EEEEecCC
Q psy14768        378 CHQYNFM----SWIEVSSK  392 (452)
Q Consensus       378 ~~~~~~~----~~~evSAk  392 (452)
                      +..+++.    |.+.-||+
T Consensus       200 Lse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  200 LSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHHcCCCCCCCCeeecchh
Confidence            9998873    45665554

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=97.67  E-value=4.9e-05  Score=79.54  Aligned_cols=56  Identities=18%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS  164 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (452)
                      ++|+++|.+|||||||+|+|++..+. ....++.++|+....+...+......|+.+
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G  272 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAG  272 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCC
Confidence            68999999999999999999998764 455666677776666555544444444444

>cd01878 HflX HflX subfamily

Probab=97.67  E-value=7.3e-05  Score=69.39  Aligned_cols=28  Identities=11%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ..++|+|+|++|||||||+|++++..+.
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~   67 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVY   67 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhc
Confidence            3479999999999999999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.66  E-value=4.8e-05  Score=67.32  Aligned_cols=37  Identities=27%  Similarity=0.635  Sum_probs=32.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +||+++|.+|||||||++++++..|...+.++++..+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~   37 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY   37 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE
Confidence            4899999999999999999999999877787776544

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.66  E-value=4.8e-05  Score=67.73  Aligned_cols=37  Identities=14%  Similarity=0.224  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .|+|+|++|||||||+++|.+..+...+.++.+.++.
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~   38 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG   38 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeec
Confidence            4899999999999999999998887554444444443

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.66  E-value=4.2e-05  Score=66.33  Aligned_cols=42  Identities=31%  Similarity=0.697  Sum_probs=36.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||+++|.+|+|||||++++.+..+...+.++++.++....+
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~   43 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVI   43 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEE
Confidence            689999999999999999999999878888888887766443

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0088|consensus

Probab=97.66  E-value=2.8e-05  Score=67.78  Aligned_cols=59  Identities=32%  Similarity=0.509  Sum_probs=53.1

Q ss_pred             CCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       168 ~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      .-.|+|+++|.+.||||+|+.||+.|+|......++...|..+.+   .+++....+.|||+
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~---n~ed~ra~L~IWDT   69 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKV---NVEDCRADLHIWDT   69 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccc---ccccceeeeeeeec
Confidence            345899999999999999999999999999999999998888777   46689999999999

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.64  E-value=6e-05  Score=68.22  Aligned_cols=38  Identities=21%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +||+++|.+|||||||++++..+.|.. +.+|+|.++..
T Consensus        16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~   53 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE   53 (174)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE
Confidence            699999999999999999999888874 67888877644

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.63  E-value=4.7e-05  Score=73.32  Aligned_cols=55  Identities=36%  Similarity=0.631  Sum_probs=46.1

Q ss_pred             eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      ++|++||+.++|||+|+.+|..+.|...+.+++. +++.+.+   .+++..+.+.+||+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~---~i~~~~~~l~I~Dt   55 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLY---SIRGEVYQLDILDT   55 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEE---EECCEEEEEEEEEC
Confidence            4799999999999999999999999988888886 5554444   34577788999999

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.63  E-value=6e-05  Score=68.97  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|.+|||||||++++.+++|. .+.+|.+...
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~   53 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS   53 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce
Confidence            379999999999999999999998876 4566765543

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0467|consensus

Probab=97.62  E-value=0.00013  Score=77.80  Aligned_cols=114  Identities=17%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             cccEEEeeecccCCcceeeeccc-cccccccCCc-------------ceeeeEEEEEEeeecCCeeEEEEEEecCCcchh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNT-------------VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~-~~~~~~~~~t-------------~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      .-+++++-.-.-|||||+..++. +..+....++             -|..-....+..   -.+.+.+.++|+||+-.|
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~---~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL---LHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc---ccCceEEEEecCCCccch
Confidence            34678888899999999988875 2233222221             122222222322   346788999999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                      .+....+.+-+|++++++|+.++..-|......+.+...        ..++||+||+|.
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~--------~~~~lvinkidr  136 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG--------LKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc--------CceEEEEehhhh
Confidence            988888888999999999999887666554444444433        778999999993

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.61  E-value=6.1e-05  Score=68.20  Aligned_cols=38  Identities=39%  Similarity=0.657  Sum_probs=33.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .||+|+|++|||||||+++|....|...+.+|.+..+.
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~   39 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS   39 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE
Confidence            58999999999999999999999998778888766553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.60  E-value=6e-05  Score=67.18  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC------CCCCcCccccCceeee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF------LDNYKNTVGVDFSTKL  149 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~------~~~~~~~~~~~~~~~~  149 (452)
                      +|++||++|||||||++++.+...      ...+.+|++.++....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~   46 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE   46 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE
Confidence            489999999999999999986432      2456778877775443

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00157 Rho Rho (Ras homology) family

Probab=97.59  E-value=6.9e-05  Score=66.91  Aligned_cols=34  Identities=41%  Similarity=0.656  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      +||+++|++|||||||+++|++..|...+.+++.
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~   34 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF   34 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee
Confidence            5899999999999999999999999777777764

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0099|consensus

Probab=97.57  E-value=0.00034  Score=66.16  Aligned_cols=124  Identities=11%  Similarity=0.012  Sum_probs=83.3

Q ss_pred             eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCCh-------hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNR-------KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~-------~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      ..+.|+++|.+||+.-+.-|.+++....++|+|...+..       .+-+.++..+..++..-+++....+.+||++||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            456799999999999999999999999999999887654       2334444444444444333455669999999999


Q ss_pred             CCCCC-----------------------------cccHHH--HHHHHHHc------------CCCEEEEecCCCCccHHH
Q psy14768        363 DLPDR-----------------------------QVEINE--IEAVCHQY------------NFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       363 Dl~~~-----------------------------~~~~e~--~~~~~~~~------------~~~~~~evSAktg~nv~~  399 (452)
                      |+..+                             ..+...  ++.+.+..            ..+.+.|+.|.+-+||..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            98420                             000000  11111110            113348999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy14768        400 SMNFLVDRIICSKR  413 (452)
Q Consensus       400 lf~~i~~~i~~~~~  413 (452)
                      +|......|...+-
T Consensus       360 VFnDcrdiIqr~hl  373 (379)
T KOG0099|consen  360 VFNDCRDIIQRMHL  373 (379)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998777765443

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.56  E-value=8.4e-05  Score=65.66  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ||+++|.+|||||||++++++..+. .+.+|++.....
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~~~   37 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVET   37 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcceEE
Confidence            6899999999999999999998854 677788766543

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=97.54  E-value=7.6e-05  Score=65.65  Aligned_cols=51  Identities=14%  Similarity=0.045  Sum_probs=35.5

Q ss_pred             EEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCC
Q psy14768        113 VIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTF  163 (452)
Q Consensus       113 ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (452)
                      |+|++|||||||+|++++..+...+.++.++++....+.+........++.
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtp   51 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLP   51 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECC
Confidence            589999999999999999876655666667776655555543333333333

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.54  E-value=9.2e-05  Score=78.82  Aligned_cols=52  Identities=19%  Similarity=0.141  Sum_probs=40.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY  160 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (452)
                      .+|++||.||||||||||++++.+.....=|+++++..+-....++...++.
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~iv   55 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIV   55 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEE
Confidence            5699999999999999999999988877777887777666655555443333

>KOG2655|consensus

Probab=97.54  E-value=0.0002  Score=71.56  Aligned_cols=114  Identities=16%  Similarity=0.335  Sum_probs=70.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccc---------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-------
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDN---------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-------  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~---------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-------  303 (452)
                      .+.+.++|++|.|||||+|.|+...+...         ...+.........+.-   ++..+.|.++||+|-=       
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee---~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE---NGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC---CCeEEeeEEeccCCCcccccccc
Confidence            47888999999999999999886543321         1224444444444444   6788899999999821       


Q ss_pred             hhh-------hhhh-----------hhhc--CCCEEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        304 RYI-------CMSR-----------VYYQ--NSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       304 ~~~-------~~~~-----------~~i~--~ad~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      .+.       ....           ..+.  +.|++++.+..+- .....+.. .+..+...        +.+|=|+-|.
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~~--------vNiIPVI~Ka  168 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSKK--------VNLIPVIAKA  168 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhcc--------ccccceeecc
Confidence            010       1111           1233  5789999888763 22333322 23334333        6788888899


Q ss_pred             CCC
Q psy14768        363 DLP  365 (452)
Q Consensus       363 Dl~  365 (452)
                      |..
T Consensus       169 D~l  171 (366)
T KOG2655|consen  169 DTL  171 (366)
T ss_pred             ccC
Confidence            974

>cd01895 EngA2 EngA2 subfamily

Probab=97.53  E-value=0.00015  Score=64.35  Aligned_cols=26  Identities=31%  Similarity=0.611  Sum_probs=23.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ++|+++|++|+|||||+|++++..+.
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~~   28 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEERV   28 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccce
Confidence            68999999999999999999987654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.52  E-value=0.00035  Score=70.92  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=59.9

Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-HcCCCEEEEec
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-QYNFMSWIEVS  390 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-~~~~~~~~evS  390 (452)
                      ...++|.+++|+++........+..++..++..       +++.+||+||+||.+.  ..+..+.+.. ..+.. .+.+|
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~-Vi~vS  178 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AEEKIAEVEALAPGVP-VLAVS  178 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCc-EEEEE
Confidence            368899999999997666666666766666554       4778899999999752  1112222222 23444 79999


Q ss_pred             CCCCccHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLV  405 (452)
Q Consensus       391 Aktg~nv~~lf~~i~  405 (452)
                      |+++.+++++..++.
T Consensus       179 a~~g~gl~~L~~~L~  193 (356)
T PRK01889        179 ALDGEGLDVLAAWLS  193 (356)
T ss_pred             CCCCccHHHHHHHhh
Confidence            999999999888874

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.50  E-value=0.00017  Score=63.01  Aligned_cols=42  Identities=17%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~  150 (452)
                      ++|+++|++|+|||||++++.+..+. ....++.+.++.....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~   44 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESI   44 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEE
Confidence            58999999999999999999988765 2334455555544333

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00055  Score=70.85  Aligned_cols=142  Identities=15%  Similarity=0.183  Sum_probs=86.5

Q ss_pred             CCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhh
Q psy14768        234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYY  313 (452)
Q Consensus       234 ~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i  313 (452)
                      +.....++-++++|+||+|||||+..++. ++..+....+.-     .+++  ..++.-.+.|..++.  ...++ ....
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVr-r~tk~ti~~i~G-----PiTv--vsgK~RRiTflEcp~--Dl~~m-iDva  131 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVR-RFTKQTIDEIRG-----PITV--VSGKTRRITFLECPS--DLHQM-IDVA  131 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHH-HHHHhhhhccCC-----ceEE--eecceeEEEEEeChH--HHHHH-HhHH
Confidence            34455678899999999999999998874 222222221111     1111  156677788888882  23333 3345


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCCcccHHHHH------HHHHHcCCCEE
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDRQVEINEIE------AVCHQYNFMSW  386 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~e~~~------~~~~~~~~~~~  386 (452)
                      +-||.+||++|..-+...+.++. ++.+..+       +.| ++-|++..|+...+.....++      -|.+-+....+
T Consensus       132 KIaDLVlLlIdgnfGfEMETmEF-Lnil~~H-------GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKl  203 (1077)
T COG5192         132 KIADLVLLLIDGNFGFEMETMEF-LNILISH-------GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKL  203 (1077)
T ss_pred             HhhheeEEEeccccCceehHHHH-HHHHhhc-------CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceE
Confidence            67899999999987755555543 4444443       245 667889999976333333332      24444444447


Q ss_pred             EEecCCCC
Q psy14768        387 IEVSSKEH  394 (452)
Q Consensus       387 ~evSAktg  394 (452)
                      |++|...+
T Consensus       204 FylsgV~n  211 (1077)
T COG5192         204 FYLSGVEN  211 (1077)
T ss_pred             EEeccccc
Confidence            88887653

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.50  E-value=0.00013  Score=80.78  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=48.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCCCCCC---------------------
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ---------------------  167 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  167 (452)
                      ++|++||.||||||||||++++.++.....++++++.....+.+........|+.+...                     
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~   83 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS   83 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence            68999999999999999999998776444466655555444444443333333333211                     


Q ss_pred             CCceeEEEEcCCCCCc
Q psy14768        168 TPSYLILITGDSTVGK  183 (452)
Q Consensus       168 ~~~~~Il~vgD~~vGk  183 (452)
                      .....+++|.|+..+.
T Consensus        84 ~~aD~vI~VvDat~le   99 (772)
T PRK09554         84 GDADLLINVVDASNLE   99 (772)
T ss_pred             cCCCEEEEEecCCcch
Confidence            1335678888876543

>cd01898 Obg Obg subfamily

Probab=97.48  E-value=0.00018  Score=64.13  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .|+|||++|||||||+|++.+...
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~   25 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP   25 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc
Confidence            389999999999999999997654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01855 YqeH YqeH

Probab=97.46  E-value=5.6e-05  Score=69.57  Aligned_cols=55  Identities=15%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             cccEEEeeecccCCcceeeecccccc---------ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF---------LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~---------~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      ...++++|.+|||||||+|.+++...         .....++++.+.....  .   +.   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~---~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--L---GN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe--c---CC---CCEEEeCcCC
Confidence            46899999999999999999997432         3445556655543322  2   22   3679999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	452
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		8e-25
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-24
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-24
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-23
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-23
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-22
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-22
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-22
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-22
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-22
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-21
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-21
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-21
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-21
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-21
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-21
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-21
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-21
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-21
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-20
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-20
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-20
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-20
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-20
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-20
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		8e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		9e-20
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-19
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-19
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-19
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-19
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-19
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-19
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-19
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-19
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-19
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-19
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-19
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-19
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-19
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-19
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-19
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-19
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-19
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		7e-19
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-19
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		8e-19
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		9e-19
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-18
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-18
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-18
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-18
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-18
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-18
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-18
1byu_A	216	Canine Gdp-Ran Length = 216		2e-18
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-18
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-18
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-18
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-18
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-18
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-18
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-18
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		7e-18
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-18
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		8e-18
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		8e-18
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-17
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-17
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-17
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-17
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-17
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-17
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-17
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-17
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-17
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-17
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-17
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-17
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-17
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-17
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-17
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-17
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-17
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		9e-17
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		9e-17
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-15
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-15
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-15
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-15
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		6e-15
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-15
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-15
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		7e-15
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		8e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-14
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-14
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-14
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-14
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-14
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		9e-14
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-13
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-13
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-13
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-13
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-13
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-13
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-13
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-13
4q21_A	189	Molecular Switch For Signal Transduction: Structura		9e-13
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-12
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-12
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-12
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-12
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-12
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-12
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-12
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-12
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		4e-12
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-12
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-12
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-12
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-12
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		6e-12
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-12
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-12
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		8e-12
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		9e-12
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		9e-12
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-11
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-11
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-11
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-11
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-11
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-11
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		7e-11
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		7e-11
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		7e-11
1mh1_A	186	Small G-Protein Length = 186		9e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-10
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-10
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-10
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-10
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-10
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-10
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-10
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-10
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-10
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-10
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-10
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-10
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-10
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-09
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-09
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-09
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-09
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-09
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-09
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-09
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		4e-09
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		4e-09
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-09
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-09
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-09
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-09
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		6e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-09
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		7e-09
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		7e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		7e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		7e-09
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		7e-09
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		8e-09
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		8e-09
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		8e-09
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-09
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-09
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		9e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-08
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-08
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-08
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-08
2kb0_A	178	Cdc42(T35a) Length = 178		3e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-08
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-08
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-08
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-08
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		4e-08
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-08
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-08
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-07
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-07
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		6e-07
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-07
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		8e-07
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-06
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-06
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-06
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-06
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-06
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-06
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-06
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-06
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-06
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-06
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-06
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-06
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		5e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		7e-06
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		7e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-06
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-05
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-05
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-05
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-05
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-05
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-05
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-05
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-05
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-05
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		6e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		6e-05
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		9e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-04
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-04
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		4e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		4e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-04
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		9e-04

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD++VGKT  VQ F    F +   +T+GVDF+ K L  +   G+ VKLQIWD A
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ---GKRVKLQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +++ YY++++G I+ +D+T R SF SV  W  D+        G+ +  LL+ +
Sbjct: 87  GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K DL + R+V + E +++   Y+ +  IE S+K+   +E++ 
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK +       R V +QIWD AGQ
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C+++FD+T   +F+++  W+ +   +    +    P ++L +K 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           DL +RQV     +A C+  N + + E S+KE + +E + 
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK +       R V +QIWD AGQ
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C+++FD+T   +F+++  W+ +   +    +    P ++L +K 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           DL +RQV     +A C+  N + + E S+KE + +E + 
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK +       R V +QIWD AGQ
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C+++FD+T   +F+++  W+ +   +    +    P ++L +K 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           D  +RQV     +A C+  N + + E S+KE + +E + 
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK +       R V +QIWD AG 
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM---VDDRLVTMQIWDTAGL 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C+++FD+T   +F+++  W+ +   +    +    P ++L +K 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           DL +RQV     +A C+  N + + E S+KE + +E + 
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ILI G+S+VGKTS++  +  + F   + +TVG+DF  K +       + +KLQIWD A
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G I+M+D+TN +SF +V  W   + +    DN      LL+ +
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNA---QVLLVGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           KCD+ D +V  +E       +    + E S+K+++ ++ +   LVD +IC K
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEK 169

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 12/174 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
           + +LI G+S+VGKTS++  +  + F   + +TVG+DF  K +  H+K     VKLQIWD 
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----RVKLQIWDT 79
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+RY  ++  YY+ + G I+M+D+TN +SF +V  W   + +    DN      +L+ 
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNA---QVILVG 135
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           +KCD+  +R V   + + +  Q  F  + E S+KE++ +  +   LVD  IC K
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVD-AICDK 187

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 104/174 (59%), Gaps = 10/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +LI GDS VGK+S +  F  N F  +Y  T+GVDF  + +   +  G  VKLQIWD A
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+ +SF +V +W H+++  C  D+   +  +L+ +
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DD---VCRILVGN 121
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           K D P+R+ VE  +      Q   +   E S+KE++ +E+  N + + ++ +K+
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKK 174

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 8/175 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ILI G+S+VGKTS++  +  + F   + +TVG+DF  K +       + +KLQIWD A
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND---KRIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G I+ +D+TN +SF +V  W   + +    DN  +   LL+ +
Sbjct: 66  GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYS-WDNAQV---LLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           KCD  D +V  +E       +    + E S+K+++ ++ +   LVD +IC K  E
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD-VICEKXSE 175

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G     G+  K  LQ
Sbjct: 28  LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AGQ+R+  ++  +++++ G ++MFDLT+++SF +V  W   L +    +N  +   
Sbjct: 88  LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--- 144
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           +L+ +K DLPD Q E+NE +A  +  +Y  + + E S+     +E ++  L+D I+  KR
Sbjct: 145 VLIGNKADLPD-QREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KR 200
Query: 414 MEE 416
           ME+
Sbjct: 201 MEQ 203

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 101/168 (60%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + D+Y +T+GVDF  + +S +    + VKLQIWD A
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLEN---KTVKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G II++D+T+R SF++V QW  ++D +  ++N   +  LL+ +
Sbjct: 67  GQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID-RYAMEN---VNKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCDL  ++V  ++        + + +IE S+K    +E + + +   I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD A
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ S G II++D+T+++SF  V  W  ++D        + +  LL+ +
Sbjct: 79  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 134
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           KCDL D++V   ++       N M ++E S+ +   +ED+ 
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD A
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ S G II++D+T+++SF  V  W  ++D        + +  LL+ +
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           KCDL D++V   ++       N M ++E S+ +   +ED+ 
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+ +KLQIWD A
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G ++++D+TN KSF+++  W  +++     D    +  ++L +
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD----VEKMILGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           KCD+ D RQV     E +   Y  + ++E S+K ++ +E++  F + R I +K
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF-FTLARDIKAK 172

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD A
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ S G II++D+T+++SF  V  W  ++D        + +  LL+ +
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 121
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           KCDL D++V   ++       N M ++E S+ +   +ED+ 
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 10/173 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+ +KLQIWD A
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G ++++D+TN KSF+++  W  +++     D    +  ++L +
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD----VEKMILGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           KCD+ D RQV     E +   Y  + ++E S+K ++ +E++  F + R I +K
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF-FTLARDIKAK 170

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 12/177 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK-LLSHKKYGGRPVKLQIWDI 299
           + +L+ G+S+VGKTS++  +  + F   + +TVG+DF  K +  H K     +KLQIWD 
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK----RIKLQIWDT 78
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+RY  ++  YY+ + G ++M+D+ N++SF +V  W   + +    DN      +L+ 
Sbjct: 79  AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNA---QVILVG 134
Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           +KCDL D R V   +   +     F  + E S+KE++ ++     LVD +IC K  E
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVD-VICEKMNE 189

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V +QIWD A
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   +Y+ SD C++ F + + +SF+++  WK +      +      P ++L +
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 128
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
           K D+ +RQV   E +A C       + E S+K+   +  +    V RI+ +
Sbjct: 129 KTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 106/183 (57%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G     G+  K  LQ
Sbjct: 14  LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AG +R+  ++  +++++ G ++MFDLT+++SF +V  W   L +    +N  +   
Sbjct: 74  LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           +L+ +K DLPD Q E+NE +A  +  +Y  + + E S+     +E S+  L+D I+  KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM--KR 186
Query: 414 MEE 416
           ME+
Sbjct: 187 MEK 189

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 106/183 (57%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G     G+  K  LQ
Sbjct: 14  LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AG +R+  ++  +++++ G ++MFDLT+++SF +V  W   L +    +N  +   
Sbjct: 74  LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           +L+ +K DLPD Q E+NE +A  +  +Y  + + E S+     +E S+  L+D I+  KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLIM--KR 186
Query: 414 MEE 416
           ME+
Sbjct: 187 MEK 189

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V +QIWD A
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTA 64
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   +Y+ SD C++ F + + +SF+++  WK +      +      P ++L +
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           K D+ +RQV   E +A C       + E S+K+   +  +    V R++ ++
Sbjct: 125 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I G   VGKTS ++ F  + F +  K+TVGVDF  K +  +   G+ ++LQIWD AGQ
Sbjct: 29  VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR---GKKIRLQIWDTAGQ 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+++ G I+++D+T +++F+ + +W   +D     D       LL+ +K 
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA----ELLLVGNKL 141
Query: 363 DLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           D   DR++   + E    Q   M + E S+K++  +++    LVD I+
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V +QIWD A
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   +Y+ SD C++ F + + +SF+++  WK +      +      P ++L +
Sbjct: 67  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 126
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
           K D+ +RQV   E +A C       + E S+K+   +  +    V R++ +
Sbjct: 127 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGK+S +  +V NKF     +T+GV+F  + L   +  GR V LQIWD AGQ
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDL---EVDGRFVTLQIWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C++ F + +R+SFE++  W+ +      + +    P ++L +K 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKE 393
           D  DRQV   E +  C +     ++E S+K+
Sbjct: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKD 157

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 95/160 (59%), Gaps = 11/160 (6%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
           SP++   + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R ++
Sbjct: 2   SPLR--KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTIR 56
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
           LQ+WD AGQ+R+  +   Y ++S   ++++D+TN  SF+   +W  D+ +    + G+ +
Sbjct: 57  LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDV 112
Query: 354 PCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
             +L+ +K DL D RQV I E E    + N M +IE S+K
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAK 151

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 108/187 (57%), Gaps = 12/187 (6%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +  +L+ +
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 118
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM-NFLVD--RIICSKRMEE 416
           K DL   R V  +E  A   + N +S+IE S+ +   +E++  N L +  RI+  K++ +
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 177
Query: 417 EAVERKS 423
            A   +S
Sbjct: 178 RAAHDES 184

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 84/143 (58%), Gaps = 8/143 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y ++  G+  VGKTS +  F  + F +NY++T+G+DF +K L   +    PV+LQ+WD A
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDE---GPVRLQLWDTA 58
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   Y ++S   I+++D+TNR+SFE+  +W  D+    + + G  +   L+ +
Sbjct: 59  GQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI----LNERGKDVIIALVGN 114
Query: 361 KCDLPD-RQVEINEIEAVCHQYN 382
           K DL D R+V   E      +YN
Sbjct: 115 KTDLGDLRKVTYEEGXQKAQEYN 137

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G     G+  K  LQ
Sbjct: 14  LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AG +R+  ++  +++++ G ++ FDLT+++SF +V  W   L +    +N  +   
Sbjct: 74  LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           +L+ +K DLPD Q E+NE +A  +  +Y  + + E S+     +E S+  L+D I   KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLI--XKR 186
Query: 414 MEE 416
            E+
Sbjct: 187 XEK 189

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R V+LQ+WD A
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---DRTVRLQLWDTA 58
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   Y ++S   ++++D+TN  SF+   +W  D+ +    + G+ +  +L+ +
Sbjct: 59  GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 114
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQV I E E    + N M +IE S+K
Sbjct: 115 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 146

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +
Sbjct: 74  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 129
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           KCDL  ++V              + ++E S+K    +E S   +   I   KRM
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI--KKRM 181

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 16/183 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVK--LQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K + +   G     G+  K  LQ
Sbjct: 14  LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AG +R+  ++  +++++ G ++ FDLT+++SF +V  W   L +    +N  +   
Sbjct: 74  LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI--- 130
Query: 356 LLLASKCDLPDRQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           +L+ +K DLPD Q E+NE +A  +  +Y  + + E S+     +E S+  L+D I   KR
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLDLI--XKR 186
Query: 414 MEE 416
            E+
Sbjct: 187 XEK 189

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 119
Query: 361 KCDLPDRQV 369
           KCDL  ++V
Sbjct: 120 KCDLTTKKV 128

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V +K+   YK T+G DF TK ++    G +   +Q+WD AGQ
Sbjct: 11  VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C++++D+TN  SFE++  W+ +      +++    P ++L +K 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 363 DLPDRQVEINEIEA 376
           D  + +  ++E  A
Sbjct: 129 DAEESKKIVSEKSA 142

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 104/170 (61%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGK++ +  F +++F    K+T+GV+F+TK +  K    + +K QIWD A
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLK--NNKIIKAQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG-AMLPCLLLA 359
           GQ+RY  ++  YY+ + G ++++D+T + SFE++ +W  +L      DN  + +  LL+ 
Sbjct: 66  GQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELR-----DNADSNIVILLVG 120
Query: 360 SKCDLPDRQVEINEIEAVCH-QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +K DL   +V IN+ +A  + +   +++IE S+ E   +E + + L++ I
Sbjct: 121 NKSDLKHLRV-INDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 119
Query: 361 KCDLPDRQV 369
           KCDL  ++V
Sbjct: 120 KCDLTTKKV 128

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
           P+      IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKL
Sbjct: 2   PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKL 58
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
           Q+WD AGQ+R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L 
Sbjct: 59  QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL- 115
Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
            LL+ +K D+  R V  ++ EA+  +   + +IE S+K
Sbjct: 116 -LLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAK 151

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +
Sbjct: 83  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 138
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           KCDL  ++V              + ++E S+K    +E S   +   I   KRM
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI--KKRM 190

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 90
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +
Sbjct: 91  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 146
Query: 361 KCDLPDRQV 369
           KCDL  ++V
Sbjct: 147 KCDLTTKKV 155

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           ++ +++ G+  VGKTS V  + +NKF D +  T+G  F TK L+    GG+ V L IWD 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN---IGGKRVNLAIWDT 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  +  +YY++S+G I+++D+T+  SF+ V  W  +L  + +L N   L   ++ 
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICL--CIVG 118
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +K DL  +R V I E E+         +   S+K++  IE+    L  R+I
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 92/150 (61%), Gaps = 8/150 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQIWD AGQ
Sbjct: 6   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQIWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L  LL+ +K 
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           D+  R V  ++ EA+  +   + +IE S+K
Sbjct: 119 DMETRVVTADQGEALAKELG-IPFIESSAK 147

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK   +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +
Sbjct: 74  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGN 129
Query: 361 KCDLPDRQV 369
           KCDL  ++V
Sbjct: 130 KCDLTTKKV 138

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
            +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD AG
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAG 57
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +K
Sbjct: 58  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNK 113
Query: 362 CDLPDRQV 369
           CDL  ++V
Sbjct: 114 CDLTTKKV 121

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQIWD AGQ
Sbjct: 6   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQIWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L  LL+ +K 
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           D   R V  ++ EA+  +   + +IE S+K
Sbjct: 119 DXETRVVTADQGEALAKELG-IPFIESSAK 147

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 7/172 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           + T  ILI G+S VGK+S +  F  + F      T+GVDF  K +S     G   KL IW
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS---VDGNKAKLAIW 69
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+R+  ++  YY+ + G I+++D+T R +F  +  W ++L++ C  ++   +   L
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNXL 126
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           + +K D  +R+V+ NE      +++ + +IE S+K    ++ +   LV++II
Sbjct: 127 VGNKIDKENREVDRNEGLKFARKHSXL-FIEASAKTCDGVQCAFEELVEKII 177

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 92/151 (60%), Gaps = 8/151 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
            IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQ+WD AG
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQLWDTAG 78
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q+R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L  LL+ +K
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNK 134
Query: 362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
            D+  R V  ++ EA+  +   + +IE S+K
Sbjct: 135 SDMETRVVTADQGEALAKELG-IPFIESSAK 164

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R ++LQ+WD A
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTIRLQLWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +R+  +   Y ++S   ++++D+TN  SF+   +W  D+ +    + G+ +  +L+ +
Sbjct: 71  GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 126
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQV I E E    + N M +IE S+K
Sbjct: 127 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 158

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+  
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGI 121
Query: 361 KCDLPDRQV 369
           KCDL  ++V
Sbjct: 122 KCDLTTKKV 130

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R V+LQ+WD A
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +R+  +   Y ++S   ++++D+TN  SF+   +W  D+ +    + G+ +  +L+ +
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 119
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQV I E E    + N M +IE S+K
Sbjct: 120 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 151

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  L+ G +  GK+  +  F++NKF  +  +T+GV+F +++++    GG+ VKLQIWD A
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN---VGGKTVKLQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++R YY+ + G ++++D+T+R+++ S+  W  D  +         +  +L  +
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA----SPNIVVILCGN 138
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K DL P+R+V   E      +   M ++E S+     +E++ 
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVEEAF 179

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R V+LQ+WD A
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 73
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +R+  +   Y ++S   ++++D+TN  SF+   +W  D+ +    + G+ +  +L+ +
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT----ERGSDVIIMLVGN 129
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQV I E E    + N M +IE S+K
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVM-FIETSAK 161

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ++Y  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R V+LQ+WD A
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 71
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   Y ++S   ++++D+TN  SF    +W  D+ +    + G+ +  +L+ +
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT----ERGSDVIIMLVGN 127
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQV   E E    + N M +IE S+K
Sbjct: 128 KTDLSDKRQVSTEEGERKAKELNVM-FIETSAK 159

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQ+WD AGQ
Sbjct: 6   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD---INGKKVKLQLWDTAGQ 62
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L  LL+ +K 
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           D   R V  ++ EA+  +   + +IE S+K
Sbjct: 119 DXETRVVTADQGEALAKELG-IPFIESSAK 147

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  +    R V+LQ+WD A
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   Y ++S   ++++D+TN  SF+   +W  D+ +    + G+ +  +L+ +
Sbjct: 60  GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT----ERGSDVIIMLVGN 115
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           K DL D RQ+ I E E    + + M +IE S+K
Sbjct: 116 KTDLADKRQITIEEGEQRAKELSVM-FIETSAK 147

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-------GRPVKLQ 295
            L  GDS VGKTS +  +   KF   +  TVG+DF  K + ++  G       G+ + LQ
Sbjct: 14  FLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQ 73
Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AG +R+  ++  +++++ G +++FDLTN +SF +V  W   L      +N  ++ C
Sbjct: 74  LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLC 133
Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
               +K DL D R V+  E   +  +Y  + + E S+     I  ++  L+D I+  KRM
Sbjct: 134 ---GNKSDLEDQRAVKEEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--KRM 187
Query: 415 E 415
           E
Sbjct: 188 E 188

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  L+ G++  GK+  +  F++ KF D+  +T+GV+F +K+++    GG+ VKLQIWD A
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLL 357
           GQ+R+  ++R YY+ + G ++++D+T+R+++ ++  W  D   L S+ I+        +L
Sbjct: 68  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-------IIL 120
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSS 391
             +K DL  DR+V   E      Q N + ++E S+
Sbjct: 121 CGNKKDLDADREVTFLEASRFA-QENELMFLETSA 154

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +  +L+ +
Sbjct: 87  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R V  +E  A   + N +S+IE S+ +   +E +   ++  I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  L+ G++  GK+  +  F++ KF D+  +T+GV+F +K+++    GG+ VKLQIWD A
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLL 357
           GQ+R+  ++R YY+ + G ++++D+T+R+++ ++  W  D   L S+ I+        +L
Sbjct: 69  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-------IIL 121
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSS 391
             +K DL  DR+V   E      Q N + ++E S+
Sbjct: 122 CGNKKDLDADREVTFLEASRFA-QENELMFLETSA 155

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 77
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +  +L+ +
Sbjct: 78  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 133
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R V  +E  A   + N +S+IE S+ +   +E +   ++  I
Sbjct: 134 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++S+ +V QW  ++D          +  LL+ +
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA----SENVNKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           K DL  ++V  N           + ++E S+K    +E +   +   I   KRM  E +
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI--KKRMGLEVL 179

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD A
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTA 66
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G I+++D+T+++S+ +V QW  ++D          +  LL+ +
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA----SENVNKLLVGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           K DL  ++V  N           + ++E S+K    +E +   +   I   KRM
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI--KKRM 174

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 128 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           ++ +++ G+  VGKTS V  + +NKF D +  T+   F TK L+    GG+ V L IWD 
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN---IGGKRVNLAIWDT 76
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  +  +YY++S+G I+++D+T+  SF+ V  W  +L  + +L N   L   ++ 
Sbjct: 77  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICL--CIVG 132
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +K DL  +R V I E E+         +   S+K++  IE+    L  R+I
Sbjct: 133 NKIDLEKERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 182

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 115
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 116 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           ++ +++ G+  VGKTS V  + +NKF D +  T+   F TK L+    GG+ V L IWD 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLN---IGGKRVNLAIWDT 62
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  +  +YY++S+G I+++D+T+  SF+ V  W  +L  + +L N   L   ++ 
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICL--CIVG 118
Query: 360 SKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +K DL  +R V I E E+         +   S+K++  IE+    L  R+I
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 94/162 (58%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  +I GD  VGK+  +  F + KF+ +  +T+GV+F T+++   +  G+ +KLQIWD A
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++R YY+ + G ++++D+T R ++  +  W    D++ + +   ++  +L+ +
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL--TDARNLTNPNTVI--ILIGN 128
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K DL   R V   E +    + N + ++E S+K    +ED+ 
Sbjct: 129 KADLEAQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAF 169

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 7/123 (5%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD AGQ
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAGQ 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D          +  LL+ +KC
Sbjct: 58  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKC 113
Query: 363 DLP 365
           DL 
Sbjct: 114 DLT 116

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 78/129 (60%), Gaps = 11/129 (8%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
            Y I++ GD+ VGK+S++    +N+F +N   T+GVDF  K L      G    LQ+WD 
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI---VDGERTVLQLWDT 84
Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA--MLPCLL 357
           AGQ+R+  +++ Y++ +DG ++++D+T  KSF ++ +W        ++++ A   +P +L
Sbjct: 85  AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD------MIEDAAHETVPIML 138
Query: 358 LASKCDLPD 366
           + +K D+ D
Sbjct: 139 VGNKADIRD 147

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 10/167 (5%)
Query: 242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
            +++ G+  VGK+S +Q + +  F  +YK T+GVDF   L    +     V+L +WD AG
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF---LERQIQVNDEDVRLMLWDTAG 63
Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q+ +  +++ YY+ +  C+++F  T+R+SFE++  W+     K + + G  +P  L+ +K
Sbjct: 64  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE----KVVAEVGD-IPTALVQNK 118
Query: 362 CDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR 407
            DL D   ++  E E +  +   + +   S KE L + +   +L ++
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   II FD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 92/155 (59%), Gaps = 15/155 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  L+ G++  GK+  +  F++ KF D+  +T+GV+F +K+++    GG+ VKLQIWD A
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN---VGGKYVKLQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD---LDSKCILDNGAMLPCLL 357
           G +R+  ++R YY+ + G ++++D+T+R+++ ++  W  D   L S+ I+        +L
Sbjct: 66  GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-------IIL 118
Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSS 391
             +K DL  DR+V   E      Q N + ++E S+
Sbjct: 119 CGNKKDLDADREVTFLEASRFA-QENELMFLETSA 152

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 96/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 86
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +  +L+ +
Sbjct: 87  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 142
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R V  +E  A   + N +S+IE S+ +   +E +   ++  I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  +I GD  VGK+  +  F + KF+ +  +T+GV+F T+++   +  G+ +KLQIWD A
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWDTA 87
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ R+  ++R YY+ + G ++++D+T R ++  +  W    D++ + +   ++  +L+ +
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL--TDARNLTNPNTVI--ILIGN 143
Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K DL   R V   E +    + N + ++E S+K    +ED+ 
Sbjct: 144 KADLEAQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAF 184

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 96/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 65
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +  +L+ +
Sbjct: 66  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 121
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R V  +E  A   + N +S+IE S+ +   +E +   ++  I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGK++ +  F +N+F  + K+T+GV+F+T+ L  +   G+ +K QIWD A
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE---GKRIKAQIWDTA 70
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G +I++D++   S+E+   W  +L      DN A+    L+ +
Sbjct: 71  GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAV---GLIGN 126
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   +    E      Q N + + E S+     ++ +   L++ I
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 68  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 122
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 123 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 69
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 70  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 124
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E  A+
Sbjct: 125 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 181

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +    Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 72
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 127
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 128 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    L+ H   G  P+K  +WD A
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP-LVFHTNRG--PIKFNVWDTA 63
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 64  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGN 118
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           K D+ DR+V+   I  V H+   + + ++S+K +   E    +L  ++I    +E  A+
Sbjct: 119 KVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 175

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G+S VGKT+ +  F +N+F  + + T+GV+FST+ +     G   VK QIWD A
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWDTA 82
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G +++FDLT  +++  V +W  +L         A +  +L+ +
Sbjct: 83  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA----EATIVVMLVGN 138
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
           K DL   R+V   E        N + ++E S+ +   +E +   ++  I  
Sbjct: 139 KSDLSQAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 188

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           ++PT+ +++ GD   GKT++V+  +  +F   Y  T+GV+    L  +  +G   +K  +
Sbjct: 9   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 65
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AG +++  +   YY N+   IIMFD+T+R ++++V  W  DL   C       +P +
Sbjct: 66  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIV 120
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           L  +K D+ +R+V+   I    H+   + + ++S+K +   E    +L  ++  + ++E
Sbjct: 121 LCGNKVDVKERKVKAKTI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLE 177

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G+S VGKT+ +  F +N+F  + + T+GV+FST+ +     G   VK QIWD A
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G +++FDLT  +++  V +W  +L         A +  +L+ +
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA----EATIVVMLVGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
           K DL   R+V   E        N + ++E S+ +   +E +   ++  I  
Sbjct: 124 KSDLSQAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 173

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  +I GD+ VGK+  +  F   +F   +  T+GV+F  ++++     G+ +KLQIWD A
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIT---IDGKQIKLQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ +  ++R YY+ + G ++++D+T R +F  +  W  D        N  M+  +L+ +
Sbjct: 68  GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHS---NSNMV-IMLIGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K DL   R+V+  E EA   ++  + ++E S+K    +E++ 
Sbjct: 124 KSDLESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAF 164

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 62
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +   L+ +
Sbjct: 63  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIXLVGN 118
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R V  +E  A   + N +S+IE S+ +   +E +   ++  I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 91/161 (56%), Gaps = 10/161 (6%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
            + +++ GDS VGKT  +  F    FL   + +TVG+DF  K+L      G  VKLQ+WD
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD---VDGVKVKLQMWD 66
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
            AGQ+R+  ++  YY+++   ++++D+TN+ SF+++  W  ++      D    +  +LL
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLL 122
Query: 359 ASKCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
            +K D   +R V+  + E +  +Y  + ++E S+K  L ++
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVD 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD A
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTA 68
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +   L+ +
Sbjct: 69  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIXLVGN 124
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R V  +E  A   + N +S+IE S+ +   +E +   ++  I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 91/162 (56%), Gaps = 9/162 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  +I GD+ VGK+  +  F   +F   +  T+GV+F  ++++     G+ +KLQIWD A
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN---IDGKQIKLQIWDTA 78
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ +  ++R YY+ + G ++++D+T R++F  +  W  D        + + +  +L+ +
Sbjct: 79  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGN 134
Query: 361 KCDLPDRQ-VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSM 401
           K DL  R+ V+  E EA   ++  + ++E S+K    +E++ 
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAF 175

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GK+S V  FV+++F++  ++T+G  F ++ L+        VK +IWD AGQ
Sbjct: 15  LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VNDATVKFEIWDTAGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++ +YY+ +   II+FD+TN+ SFE   +W  +L ++    N  M+   L  +K 
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG---NPNMVMA-LAGNKS 127
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           DL D +    E      Q N + ++E S+K
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAK 157

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           ++PT+ +++ GD   GKT++V+  +  +F   Y  T+GV+    L  +  +G   +K  +
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AG +++  +   YY N+   IIMFD+T+R ++++V  W  DL   C       +P +
Sbjct: 59  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIV 113
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           L  +K D+ +R+V+   I    H+   + + ++S+K +   E    +L  ++  + ++E
Sbjct: 114 LCGNKVDVKERKVKAKTI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLE 170

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           ++PT+ +++ GD   GKT++V+  +  +F   Y  T+GV+    L  +  +G   +K  +
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHP-LSFYTNFG--EIKFDV 57
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AG +++  +   YY N+   IIMFD+T+R ++++V  W  DL   C       +P +
Sbjct: 58  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIV 112
Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           L  +K D+ +R+V+   I    H+   + + ++S+K +   E    +L  ++  + ++E
Sbjct: 113 LCGNKVDVKERKVKAKTI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLE 169

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ G++ VGKT  V+ F Q  F      T+GVDF  K +   +  G  VKLQIWD A
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDTA 83
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +++ YY++++  I+ +D+T  +SF  + +W  +++          +  +L+ +
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGN 139
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           K DL +R+    +      +   M ++E S+KE   +E     L  R+I   R
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
           L P +   + I++ GDS VGKT     F   +F D  + T+GVDF  + +      G  +
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD---IDGERI 78
Query: 293 KLQIWDIAGQDRYI-CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
           K+Q+WD AGQ+R+   M + YY+N    + ++D TN  SF S+  W  +     + ++  
Sbjct: 79  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND-- 136
Query: 352 MLPCLLLASKCDL 364
            +P +L+ +KCDL
Sbjct: 137 -IPRILVGNKCDL 148

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGKT     F   +F D  + T+GVDF  + +      G  +K+Q+WD A
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD---IDGERIKIQLWDTA 77
Query: 301 GQDRYI-CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           GQ+R+   M + YY+N    + ++D+TN  SF S+  W  +     + ++   +P +L+ 
Sbjct: 78  GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVG 134
Query: 360 SKCDL 364
           +KCDL
Sbjct: 135 NKCDL 139

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 15/170 (8%)
Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
           S  +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVC---LDDTTVK 58
Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML 353
            +IWD AGQ+RY  ++ +YY+ +   I+++D+TN+++F     W  +L  +         
Sbjct: 59  FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS------- 111
Query: 354 PCLLLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           P +++A   +K DL + R VE  E +A     N + ++E S+K  + + D
Sbjct: 112 PSIVIALAGNKADLANKRMVEYEEAQAYADD-NSLLFMETSAKTAMNVND 160

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I 
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  M   Y +  +G + +F + N KSFE + Q++  +  K + D+   +P +L
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVL 113
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + +KCDL  R VE  + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG-VDFSTKLLSHKKYGGRPVKLQIWD 298
           TY I + GD  VGKT+Y+   +  +F  NY  TVG V+     L  +   G  +K  +WD
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQ---GNVIKFNVWD 67
Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
            AGQ++   +  VYY  + G I+ FD+T+R + +++ +W  +   + ++ N A  P ++ 
Sbjct: 68  TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PIVVC 123
Query: 359 ASKCDLPDRQ 368
           A+K D+ +RQ
Sbjct: 124 ANKIDIKNRQ 133

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I 
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  M   Y +  +G + +F + N KSFE + Q++  +  K + D+   +P +L
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVL 113
Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + +KCDL  R VE  + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I D A
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ Y  M   Y +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCDL  R VE  + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 117 KCDLAGRTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I D A
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ Y  M   Y +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGN 116
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCDL  R VE  + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 117 KCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I D A
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ Y  M   Y +  +G + +F + N KSFE +  ++  +     + +   +P +L+ +
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCDLP R V+  + + +   Y  + +IE S+K    ++D+   LV  I
Sbjct: 118 KCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +IW
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC---LDDTTVKFEIW 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+RY  ++ +YY+ +   I+++D+TN  +F     W  +L  +        +   L
Sbjct: 58  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SPNIVIAL 113
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
             +K DL   R VE  E +A     N + ++E S+K  + + +
Sbjct: 114 AGNKADLASKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNE 155

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 4   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 60
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 61  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 113
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 114 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 159

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 12/159 (7%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           + +  +++ G++ VGK+S V  FV N F +N + T+G  F T+ ++  ++    VK +IW
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH---TVKFEIW 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+R+  ++  YY+N+   ++++D+T  +SF     W  +L  +   D    +   L
Sbjct: 58  DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD----IIIAL 113
Query: 358 LASKCDL----PDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           + +K D      +R+V   E E +  +   + + E S+K
Sbjct: 114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAK 151

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 3   KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 3   KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 3   KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 3   KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 112
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 3   KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 59
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +        +   
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIA 115
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           L  +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 158

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + GD+ VGK+S V  FVQ+ F  N   T+G  F TK +     G    K  IWD AGQ
Sbjct: 26  VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP---CGNELHKFLIWDTAGQ 82
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA-SK 361
           +R+  ++ +YY+ S   +I++D+T + SF ++ +W  +L      ++G     + +A +K
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK-----EHGPENIVMAIAGNK 137
Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           CDL D R+V + + +        +  +E S+K  + IE+
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIV-VETSAKNAINIEE 175

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 9/157 (5%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 4   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 60
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++  YY+ +   I+++D+TN +SF     W  +L  +        +   
Sbjct: 61  WDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIA 116
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           L  +K DL + R V+  E ++     N + + E S+K
Sbjct: 117 LSGNKADLANKRAVDFQEAQSYADD-NSLLFXETSAK 152

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++     +QN F+D Y  T+   +  +++      G    L I D A
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTA 60
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ Y  M   Y +  +G + +F + N KSFE +  ++  +     + +   +P +L+ +
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGN 117
Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DLP R V+  + + +   Y  + +IE S+K    ++D+   LV  I
Sbjct: 118 KSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +IW
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVC---LDDTTVKFEIW 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AG +RY  ++ +YY+ +   I+++D+TN  +F     W  +L  +        +   L
Sbjct: 60  DTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SPNIVIAL 115
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
             +K DL   R VE  E +A     N + ++E S+K  + + +
Sbjct: 116 AGNKADLASKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNE 157

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           I  + +++ G+S VGK+S V  FV+ +F +  ++T+   F T+ +         VK +IW
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVC---LDDTTVKFEIW 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+RY  ++ +YY+ +   I+++D+TN  +F     W  +L  +        +   L
Sbjct: 60  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA----SPNIVIAL 115
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
             +K DL   R VE  E +A     N + ++E S+K  + + +
Sbjct: 116 AGNKADLASKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNE 157

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +I
Sbjct: 2   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC---LDDTTVKFEI 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AG +RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +         P +
Sbjct: 59  WDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-------PNI 111
Query: 357 LLA---SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           ++A   +K DL + R V+  E ++     N + ++E S+K  + + +
Sbjct: 112 VIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNE 157

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 15/161 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + GD+ VGK+S V  FV++ F  N   T+G  F TK +   +Y     K  IWD AGQ
Sbjct: 8   VCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA--- 359
           +R+  ++ +YY+ S   II++D+T  ++F ++  W  +L       +G   P +++A   
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-----HGP--PSIVVAIAG 117
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMS-WIEVSSKEHLMIED 399
           +KCDL D + E+ E +A  +  +  + ++E S+K  + I +
Sbjct: 118 NKCDLTDVR-EVMERDAKDYADSIHAIFVETSAKNAININE 157

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGK++ +  F  ++F    K+T+GV+F+T+ +  +    + +K QIWD A
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVEN---KKIKAQIWDTA 67
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +RY  ++  YY+ + G +I++D++   S+E+   W  +L      DN   +   L+ +
Sbjct: 68  GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD-DN---VAVGLIGN 123
Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS 391
           K DL   R V  +E +    + N M + E S+
Sbjct: 124 KSDLAHLRAVPTDEAKNFAME-NQMLFTETSA 154

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 16  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +     +     +P LL
Sbjct: 72  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           + +K DL D RQV + E +    Q+N ++++E S+K    + D + F + R I +++ME+
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 186

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 4   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +     +     +P LL
Sbjct: 60  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 116
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           + +K DL D RQV + E +    Q+N ++++E S+K    + D + F + R I +++ME+
Sbjct: 117 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 174

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 67
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +     +     +P LL
Sbjct: 68  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 124
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           + +K DL D RQV + E +    Q+N ++++E S+K    + D + F + R I +++ME+
Sbjct: 125 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 182

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 260 FVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319
            +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y +  +G 
Sbjct: 30  LIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 85
Query: 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH 379
           + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  + + +  
Sbjct: 86  LCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESRQAQDLAR 142
Query: 380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            Y  + +IE S+K    +ED+   LV  I
Sbjct: 143 SYG-IPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 76
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 77  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 133
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 76
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 77  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 133
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 15/161 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + GD+ VGK+S +  FV++ F  N   T+G  F TK +   +Y     K  IWD AG 
Sbjct: 9   VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWDTAGL 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA--- 359
           +R+  ++ +YY+ S   II++D+T  ++F ++  W  +L       +G   P +++A   
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-----HGP--PSIVVAIAG 118
Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMS-WIEVSSKEHLMIED 399
           +KCDL D + E+ E +A  +  +  + ++E S+K  + I +
Sbjct: 119 NKCDLTDVR-EVMERDAKDYADSIHAIFVETSAKNAININE 158

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +     + +   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQIKR---VKDSDDVPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDEY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 260 FVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC 319
            +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y +  +G 
Sbjct: 23  LIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78
Query: 320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH 379
           + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  + + +  
Sbjct: 79  LCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESRQAQDLAR 135
Query: 380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            Y  + +IE S+K    +ED+   LV  I
Sbjct: 136 SYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
           + + +   Y  + +IE S+K    +ED+   LV
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  ++   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 77
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 78  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 134
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGEICLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ ++CDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNRCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 96/180 (53%), Gaps = 10/180 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 4   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 59
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AG + Y  +   Y+++ +G + +F +T  +SF +   ++  +     +     +P LL
Sbjct: 60  DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 116
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           + +K DL D RQV + E +    Q+N ++++E S+K    + D + F + R I +++ME+
Sbjct: 117 VGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANV-DKVFFDLMREIRARKMED 174

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  ++   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D +  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D  GQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTGGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F++ Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG++ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGKEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D  GQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTTGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGHEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETXLLDILDTAGGEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGLEEYSAMRDQY 76
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 77  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 133
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGHEEYSAMRDQY 89
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE +  ++  +     + +   +P +L+ +KCDLP R V+  
Sbjct: 90  MRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGNKCDLPSRTVDTK 146
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    ++D+   LV  I
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 84/156 (53%), Gaps = 9/156 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 57
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +     +     +P LL
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLL 114
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           + +K DL D RQV + E +    Q+N ++++E S+K
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAK 149

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 5   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 60
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCL 356
           D AG + Y  +   Y+++ +G +++F +T  +SF +  +++   L  K   D    +P L
Sbjct: 61  DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK---IPLL 117
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           ++ +K DL + RQV + E  +   ++  + ++E S+K    + D + F + R I +K+M 
Sbjct: 118 VVGNKSDLEERRQVPVEEARSKAEEWG-VQYVETSAKTRANV-DKVFFDLMREIRTKKMS 175
Query: 416 E 416
           E
Sbjct: 176 E 176

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGGEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K++      G  V++ I 
Sbjct: 1   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV----LDGEEVQIDIL 56
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCL 356
           D AG + Y  +   Y+++ +G +++F +T  +SF +  +++   L  K   D    +P L
Sbjct: 57  DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK---IPLL 113
Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           ++ +K DL + RQV + E  +   ++  + ++E S+K    + D + F + R I +K+M 
Sbjct: 114 VVGNKSDLEERRQVPVEEARSKAEEWG-VQYVETSAKTRANV-DKVFFDLMREIRTKKMS 171
Query: 416 E 416
           E
Sbjct: 172 E 172

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+    M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEASAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGLEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGVEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AG + Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGIEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +KCDL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKCDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE +  ++  +     + +   +P +L+ +K DLP R V+  
Sbjct: 73  MRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGNKSDLPSRTVDTK 129
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    ++D+   LV  I
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE +  ++  +     + +   +P +L+ +K DLP R V+  
Sbjct: 73  MRTGEGFLCVFAINNTKSFEDIHHYREQIKR---VKDSEDVPMVLVGNKSDLPSRTVDTK 129
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    ++D+   LV  I
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 89
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSF  +  ++  +  K + D+   +P +L+ +KCDLP R V+  
Sbjct: 90  MRTGEGFLCVFAINNSKSFADINLYREQI--KRVKDSDD-VPMVLVGNKCDLPTRTVDTK 146
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           +   +   Y  + +IE S+K    +ED+   LV R I   RM++
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLV-REIRQYRMKK 188

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           Q  +  I I G  +VGK+S    FV+ +F+D+Y  T+   F TKL++     G+   LQ+
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQL 58
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD--NGAMLP 354
            D AGQD Y    + Y  + +G I+++ +T+ KSFE V++  H      +LD      +P
Sbjct: 59  VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHG----KLLDMVGKVQIP 113
Query: 355 CLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
            +L+ +K DL  +R +   E +A+   +N  +++E S+KE+   + +++     I+ +++
Sbjct: 114 IMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKEN---QTAVDVFRRIILEAEK 169
Query: 414 MEEEAVERKSS 424
           M+    + KSS
Sbjct: 170 MDGACSQGKSS 180

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD   GKTS    F Q  F   YK T+G+DF  + ++    G   V LQIWDI GQ
Sbjct: 9   IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDIGGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW 337
                M   Y   + G ++++D+TN +SFE++  W
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I I G  +VGK+S    FV+ +F+D+Y  T+   F TKL++     G+   LQ+ D AGQ
Sbjct: 9   IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQLVDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD--NGAMLPCLLLAS 360
           D Y    + Y  + +G I+++ +T+ KSFE V++  H      +LD      +P +L+ +
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHG----KLLDMVGKVQIPIMLVGN 119
Query: 361 KCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
           K DL  +R +   E +A+   +N  +++E S+KE+
Sbjct: 120 KKDLHMERVISYEEGKALAESWN-AAFLESSAKEN 153

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 204 GVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQN 263
           GVD  T+ L  +   G              +P  + +  +++ GD   GKTS +  F   
Sbjct: 10  GVDLGTENLYFQSMAGEE------------APPGVRSVKVVLVGDGGCGKTSLLMVFADG 57
Query: 264 KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMF 323
            F ++Y  TV   +   L    +  G+PV L IWD AGQD Y  +  ++Y ++   ++ F
Sbjct: 58  AFPESYTPTVFERYMVNL----QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCF 113
Query: 324 DLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIE 375
           D+T+  SF+++  +W  +++  C       +P +++  K DL   +  +N++ 
Sbjct: 114 DVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKTDLRKDKSLVNKLR 161

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 17/157 (10%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I I G  +VGK+S    FV+ +F+D+Y  T+   F TKL++     G+   LQ+ D AGQ
Sbjct: 4   IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLIT---VNGQEYHLQLVDTAGQ 59
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH----DLDSKCILDNGAMLPCLLL 358
           D Y    + Y  + +G I+++ +T+ KSFE V++  H    D+  K        +P +L+
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKV------QIPIMLV 112
Query: 359 ASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
            +K DL  +R +   E +A+   +N  +++E S+KE+
Sbjct: 113 GNKKDLHMERVISYEEGKALAESWN-AAFLESSAKEN 148

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 41/204 (20%)
Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS--------------- 283
            +Y  ++ G+S+VGK+S V    ++ F +N   T+G  F T +++               
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 284 -----------------HKKYGGR--PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFD 324
                            H  Y      +K  IWD AGQ+RY  +  +YY+ +   I++FD
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 325 LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM 384
           ++N  + +    W + L         +    +L+A+K D    QV+I E++      N +
Sbjct: 126 ISNSNTLDRAKTWVNQLKI------SSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL 179
Query: 385 SWIEVSSKEHLMIEDSMNFLVDRI 408
            +I+ S+K    I++    L + I
Sbjct: 180 -FIQTSAKTGTNIKNIFYMLAEEI 202

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D A Q+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAAQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +K DL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKXDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D Y  T+   +  +++      G    L I D A Q+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV----IDGETCLLDILDTAAQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +K DL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKXDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 9   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 64
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 119
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 120 DLRDDKDTIEKLK 132

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 11  VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 66
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 121
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 122 DLRDDKDTIEKLK 134

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 8   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 63
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P LL+ +K 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 118
Query: 363 DLPDRQVEINEIE 375
           DL D +  I  + 
Sbjct: 119 DLRDDKDTIERLR 131

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 8   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 63
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P LL+ +K 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 118
Query: 363 DLPDRQVEINEIE 375
           DL D +  I  + 
Sbjct: 119 DLRDDKDTIERLR 131

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P LL+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PHTPILLVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I  + 
Sbjct: 118 DLRDDKDTIERLR 130

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 34  VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 89
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 145 DLRDDKDTIEKLK 157

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++     +QN F+D    T+   +  +++      G    L I D AGQ+ Y  M   Y
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVV----IDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEIN 372
            +  +G + +F + N KSFE + Q++  +  K + D+   +P +L+ +K DL  R VE  
Sbjct: 72  MRTGEGFLCVFAINNTKSFEDIHQYREQI--KRVKDSDD-VPMVLVGNKSDLAARTVESR 128
Query: 373 EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 17  VVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 72
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 127
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 128 DLRDDKDTIEKLK 140

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 26  VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 81
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 136
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 137 DLRDDKDTIEKLK 149

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           Q  +  I I G  +VGK+S    FV+ +F+D+   T+   F TKL++     G+   LQ+
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLIT---VNGQEYHLQL 56
Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD--NGAMLP 354
            D AGQD Y    + Y  + +G I+++ +T+ KSFE V++  H      +LD      +P
Sbjct: 57  VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHG----KLLDMVGKVQIP 111
Query: 355 CLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEH 394
            +L+ +K DL  +R +   E +A+   +N  +++E S+KE+
Sbjct: 112 IMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKEN 151

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           +  GD  VGKT  +  +  NKF  +Y  TV  +FS  +       G+ V L +WD AGQ+
Sbjct: 13  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWDTAGQE 68
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y+ +D  ++ F L ++ S+E+V+ +W  +L           +P +L+ +K 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR-----FAPNVPIVLVGTKL 123
Query: 363 DLPDRQ---------VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           DL D +         +   + E +  Q    ++IE SSK    ++   +  +  ++   R
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183
Query: 414 MEEEAVERKSSIR 426
            +E    RK+  R
Sbjct: 184 RKEVPRRRKNHRR 196

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +PTY +++ GD  VGK++    F Q  F+D+Y  T+   +    L H +   +   L + 
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY----LKHTEIDNQWAILDVL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ +  M   Y +  DG +I++ +T++ SFE V ++ H L  +    +    P +L
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
           +A+K DL   R+V  ++ + +  +YN + +IE S+K+
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 164

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGK   +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 14  VVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 124
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 125 DLRDDKDTIEKLK 137

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N     Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 34  VVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 89
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 145 DLRDDKDTIEKLK 157

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 10  VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 65
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 120
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 121 DLRDDKDTIEKLK 133

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 34  VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 89
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 144
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 145 DLRDDKDTIEKLK 157

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +   +   L+I D A
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDAQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
           G +++  M  +Y +N  G  +++ +T + +F  +     DL  + + + +   +P +L+ 
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVG 115
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +KCDL D +V   E  + +  Q+N  +++E S+K  + + +    LV +I
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGLE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD  VGKT  +  F + +    Y  TV  +FS  +    KY      L +WD AGQ
Sbjct: 26  IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 81
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQW----KHDLDSKCILDNGAMLPCLL 357
           + Y  +  + Y +SD  ++ F + NR SF+++  +W    KH +D+            +L
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA---------KTVL 132
Query: 358 LASKCDL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           +  K DL       V   E + +C +   +++IE SS   + + +     VD I  +K
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +   +   L+I D A
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDAQQCMLEILDTA 61
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
           G +++  M  +Y +N  G  +++ +T + +F  +     DL  + + + +   +P +L+ 
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVG 117
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +KCDL D +V   E  + +  Q+N  +++E S+K  + + +    LV +I
Sbjct: 118 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +PTY +++ GD  VGK++    F Q  F+D Y  T+   +      H +   +   L + 
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR----KHTEIDNQWAILDVL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ +  M   Y +  DG +I++ +T++ SFE V ++ H L  +    +    P +L
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
           +A+K DL   R+V  ++ + +  +YN + +IE S+K+
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 164

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++   K    PV L +WD AGQ+
Sbjct: 13  VVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 68
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  S+E+V  +W  ++   C        P +L+ +K 
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 123
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 124 DLRDDKDTIEKLK 136

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++   K    PV L +WD AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  S+E+V  +W  ++   C        P +L+ +K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 117
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 118 DLRDDKDTIEKLK 130

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++   K    PV L +WD AGQ+
Sbjct: 14  VVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSK----PVNLGLWDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  S+E+V  +W  ++   C        P +L+ +K 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-----PSTPIILVGTKL 124
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 125 DLRDDKDTIEKLK 137

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +PTY +++ GD  VGK++    F Q  F+ +Y  T+   +    L H +   +   L + 
Sbjct: 11  LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY----LKHTEIDNQWAILDVL 66
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ +  M   Y +  DG +I++ +T++ SFE V ++ H L  +    +    P +L
Sbjct: 67  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 123
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
           +A+K DL   R+V  ++ + +  +YN + +IE S+K+
Sbjct: 124 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 159

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
           P+   T   ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L
Sbjct: 2   PLGSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTL 57
Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAML 353
            ++D AGQ+ Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        
Sbjct: 58  GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKT 112
Query: 354 PCLLLASKCDLPDRQVEINEI 374
           P LL+ ++ DL D    I ++
Sbjct: 113 PFLLVGTQIDLRDDPSTIEKL 133

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 10  VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 65
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 120
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 121 DLRDDPSTIEKL 132

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +PTY +++ GD  VGK++    F Q  F+  Y  T+   +    L H +   +   L + 
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSY----LKHTEIDNQWAILDVL 71
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ +  M   Y +  DG +I++ +T++ SFE V ++ H L  +    +    P +L
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-HQLILRV--KDRESFPMIL 128
Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE 393
           +A+K DL   R+V  ++ + +  +YN + +IE S+K+
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKD 164

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKTS V  +  N +   Y  T   +FS  +       GRPV+LQ+ D AGQD
Sbjct: 24  VLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV----SVDGRPVRLQLCDTAGQD 79
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            +  +  + Y N+D  ++ F + +  SF++V + W  ++   C        P +L+ ++ 
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-----PKAPIILVGTQS 134
Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
           DL +    + E++                KE  + E++   L + I  +  +E  A+ +K
Sbjct: 135 DLREDVKVLIELD--------------KCKEKPVPEEAAKLLAEEIKAASYIECSALTQK 180
Query: 423 S 423
           +
Sbjct: 181 N 181

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 14  VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 124
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 125 DLRDDPSTIEKL 136

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 17  VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 72
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 127
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 128 DLRDDPSTIEKL 139

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 9   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 64
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 119
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 120 DLRDDPSTIEKL 131

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 10  VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 65
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 120
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 121 DLRDDPSTIEKL 132

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 8   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 63
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 118
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 119 DLRDDPSTIEKL 130

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
           GD  VGKT  +  +  N F  +Y  TV  +FS  ++      G  V L +WD AGQ+ Y 
Sbjct: 13  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD----GNTVNLGLWDTAGQEDYN 68
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDL- 364
            +  + Y+ +D  I+ F L ++ S+E+V  +W  +L           +P +L+ +K DL 
Sbjct: 69  RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLR 123
Query: 365 PDRQVEINEIEAV 377
            D+Q  I+   AV
Sbjct: 124 DDKQFFIDHPGAV 136

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           +  GD  VGKT  +  +  N F  +Y  TV  +FS  ++ +    G  V L +WD AGQ+
Sbjct: 12  VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN----GATVNLGLWDTAGQE 67
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y+ +D  I+ F L ++ S+E+V  +W  +L           +P +L+ +K 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTKL 122
Query: 363 DL-PDRQVEINEIEAV 377
           DL  D+Q  I+   AV
Sbjct: 123 DLRDDKQFFIDHPGAV 138

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 21/175 (12%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD  VGKT  +  F + +    Y  TV  +FS  +    KY      L +WD AGQ
Sbjct: 25  IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 80
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQW----KHDLDSKCILDNGAMLPCLL 357
           + Y  +  + Y +SD  ++ F + NR SF+++  +W    KH +D+            +L
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA---------KTVL 131
Query: 358 LASKCDL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +  K DL       V   E + +C +   +++IE SS   + + +     VD I 
Sbjct: 132 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K++    F+Q+ F+ +Y  T+   ++ + +       R  +L I D AGQ+ +  M   Y
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV----IDDRAARLDILDTAGQEEFGAMREQY 73
Query: 313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-DRQVEI 371
            +  +G +++F +T+R SFE + +++  +     + +    P +L+ +K DL   RQV  
Sbjct: 74  MRTGEGFLLVFSVTDRGSFEEIYKFQRQI---LRVKDRDEFPMILIGNKADLDHQRQVTQ 130
Query: 372 NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
            E + +  Q   ++++E S+K  + ++ + + LV R+I
Sbjct: 131 EEGQQLARQLK-VTYMEASAKIRMNVDQAFHELV-RVI 166

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 9   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 64
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 119
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 120 DLRDDPSTIEKL 131

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SF  V  +W  ++   C        P +L+ +K 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKL 269
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 270 DLRDDKDTIEKLK 282

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SF  V  +W  ++   C        P +L+ +K 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKL 269
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 270 DLRDDKDTIEKLK 282

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AG +
Sbjct: 159 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----VDGKPVNLGLWDTAGLE 214
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F L +  SF  V  +W  ++   C        P +L+ +K 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKL 269
Query: 363 DLPDRQVEINEIE 375
           DL D +  I +++
Sbjct: 270 DLRDDKDTIEKLK 282

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F+D Y  T+   +  ++    +   +   L+I D A
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV----EVDCQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
           G +++  M  +Y +N  G  +++ +T + +F  +     DL  + + + +   +P +L+ 
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVG 115
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +KCDL D +V   E  + +  Q+   +++E S+K  + + +    LV +I
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  +      GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV----XIGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 22/160 (13%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y + + G   VGK+S V  FV+  F ++Y  TV  D   +++S  K       LQI D  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDK---SICTLQITDTT 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKS-------FESVVQWKHDLDSKCILDNGAML 353
           G  ++  M R+        I+++ +T+R+S       +E + + K D++S         +
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---------I 110
Query: 354 PCLLLASKCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSK 392
           P +L+ +KCD  P R+V+ +E EA+   +   +++E S+K
Sbjct: 111 PIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAK 149

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGK   +  +  NKF   Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 14  VVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 69
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 124
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 125 DLRDDPSTIEKL 136

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L + D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLRDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y   V  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
           + P Q     I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + +
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRI 71
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGA 351
           +L +WD +G   Y  +  + Y +SD  +I FD++  ++ +SV+ +WK ++   C   N  
Sbjct: 72  ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTK 129
Query: 352 MLPCLLLASKCDL 364
           M   LL+  K DL
Sbjct: 130 M---LLVGCKSDL 139

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
           + P Q     I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + +
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRI 76
Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGA 351
           +L +WD +G   Y  +  + Y +SD  +I FD++  ++ +SV+ +WK ++   C   N  
Sbjct: 77  ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTK 134
Query: 352 MLPCLLLASKCDL 364
           M   LL+  K DL
Sbjct: 135 M---LLVGCKSDL 144

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I G   VGKTS    FV+ +F + Y  TV   +S K+++    G     L + D AGQ
Sbjct: 27  VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVT---LGKDEFHLHLVDTAGQ 82
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSF---ESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           D Y  +   +     G ++++ +T+  SF   ES+ Q  H+   K        +P +L+ 
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT------RVPVVLVG 136
Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +K DL P+R+V+  E + +   +   +++E S++E+ + +     ++  I
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
           ++ P    T+ +++ G   VGK++    F+Q+ F+ +Y  T+  D  TK+ S     G P
Sbjct: 1   SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICS---VDGIP 56
Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
            +L I D AGQ+ +  M   Y +   G +++F + +R+SF  V +    +      D+  
Sbjct: 57  ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-- 114
Query: 352 MLPCLLLASKCDLP-DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
             P +L+ +K DL   RQV  +E  A    ++ +++ E S+K  L ++++   LV
Sbjct: 115 -FPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLV 167

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           I T   ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++
Sbjct: 5   IQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLF 60
Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCL 356
           D AG + Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P L
Sbjct: 61  DTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFL 115
Query: 357 LLASKCDLPDRQVEINEI 374
           L+ ++ DL D    I ++
Sbjct: 116 LVGTQIDLRDDPSTIEKL 133

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++     GG P  L ++D AG +
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGLE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +   +   L+I D A
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDCQQCMLEILDTA 59
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCI-LDNGAMLPCLLLA 359
           G +++  M  +Y +N  G  +++ +T + +F  +     DL  + + + +   +P +L+ 
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVG 115
Query: 360 SKCDLPDRQVEINEI-EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +KCDL D +V   E  + +  Q+   +++E S+K  + + +    LV +I
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  NK    Y  TV  +++  ++     GG P  L ++D AGQ+
Sbjct: 7   VVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM----IGGEPYTLGLFDTAGQE 62
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  ++ F + +  SFE+V + W  ++   C        P LL+ ++ 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQI 117
Query: 363 DLPDRQVEINEI 374
           DL D    I ++
Sbjct: 118 DLRDDPSTIEKL 129

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + ++L +WD +G 
Sbjct: 10  IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRIELSLWDTSGS 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  +I FD++  ++ +SV+ +WK ++   C   N  M   LL+  K
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKM---LLVGCK 120
Query: 362 CDL 364
            DL
Sbjct: 121 SDL 123

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 247 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI 306
           GD  VGKT  +  +  N F  +Y  TV  +FS  ++      G  V L +WD AGQ+ Y 
Sbjct: 13  GDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVD----GSTVNLGLWDTAGQEDYN 68
Query: 307 CMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
            +  + Y+ +D  ++ F L ++ S+E++  +W  +L           +P +L+ +K DL 
Sbjct: 69  RLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-----PGIPIVLVGTKLDLR 123
Query: 366 D 366
           D
Sbjct: 124 D 124

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  N F   Y  TV  ++S  ++      G+PV L +WD AGQ+
Sbjct: 9   VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----GKPVNLGLWDTAGQE 64
Query: 304 RYICMSRVYYQNSDG-------------------CIIMFDLTNRKSFESV-VQWKHDLDS 343
            Y  +  + Y  + G                    +I F L +  SFE+V  +W  ++  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 344 KCILDNGAMLPCLLLASKCDLPDRQVEINEIE 375
            C        P +L+ +K DL D +  I +++
Sbjct: 125 HC-----PNTPIILVGTKLDLRDDKDTIEKLK 151

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 243 ILITGDSTVGKTSYVQGFVQ--NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + + G++TVGK++ +  F    +KFL +Y  T GV+     ++        V+L + D A
Sbjct: 23  VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD-TTVSVELFLLDTA 81
Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G D Y      Y+      I++FD+++ +SFES   W   L S    D    L  +L+A+
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS-ARPDRERPLRAVLVAN 140
Query: 361 KCDLPDRQVEI 371
           K DLP ++ ++
Sbjct: 141 KTDLPPQRHQV 151

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + G    GKT++V      +F ++   TVG +        +K     V ++IWDI GQ
Sbjct: 25  LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM-------RKVTKGNVTIKIWDIGGQ 77
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            R+  M   Y +  +  + M D  +R+  E+     H+L  K  L     +P L+L +K 
Sbjct: 78  PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG---IPVLVLGNKR 134
Query: 363 DLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
           DLP   D +  I ++     Q   +    +S KE   I+ ++ +L+
Sbjct: 135 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GKT+ ++ F   + +D    T+G  F+ K L H+ +     KL IWD+ GQ
Sbjct: 21  LLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R Y++++DG I + D  +R+  +     + +L S  + +  A    L+ A+K 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 129
Query: 363 DLP 365
           DLP
Sbjct: 130 DLP 132

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GKT+ ++ F   + +D    T+G  F+ K L H+ +     KL IWD+ GQ
Sbjct: 19  LLMLGLDNAGKTTILKKF-NGEDIDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R Y++++DG I + D  +R+  +     + +L S  + +  A    L+ A+K 
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 127
Query: 363 DLP 365
           DLP
Sbjct: 128 DLP 130

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GKT+ ++ F   + +D    T+G  F+ K L H+ +     KL IWD+ GQ
Sbjct: 21  LLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQ 72
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R Y++++DG I + D  +R+  +     + +L S  + +  A    L+ A+K 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 129
Query: 363 DLP 365
           DLP
Sbjct: 130 DLP 132

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 253 KTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVY 312
           K+S V  FV+  F D Y  T+  D   +++S  K       LQI D  G  ++  M R+ 
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDK---SVCTLQITDTTGSHQFPAMQRLS 76
Query: 313 YQNSDGCIIMFDLTNRKSFES-------VVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
                  I++F +T+++S E        +VQ K  ++          +P +L+ +KCD  
Sbjct: 77  ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---------IPVMLVGNKCDET 127
Query: 366 DRQVEINEIEAVCHQYNFMSWIEVSSK 392
            R+V+  E +AV  ++   +++E S+K
Sbjct: 128 QREVDTREAQAVAQEWK-CAFMETSAK 153

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 244 LITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD 303
           ++ GD  VGKT  +  +  + F + Y  TV   ++  +      GG+   L ++D AGQ+
Sbjct: 22  VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV----TVGGKQYLLGLYDTAGQE 77
Query: 304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKC 362
            Y  +  + Y  +D  +I F + N  SF++V  +W  +L      +    +P LL+ ++ 
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-----EYAPNVPFLLIGTQI 132
Query: 363 DLPD 366
           DL D
Sbjct: 133 DLRD 136

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 12  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 68  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 122
Query: 362 CDL 364
            DL
Sbjct: 123 KDL 125

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 10  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 120
Query: 362 CDL 364
            DL
Sbjct: 121 KDL 123

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 9   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 119
Query: 362 CDL 364
            DL
Sbjct: 120 KDL 122

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++    ++  +  G+ V+L +WD AGQ
Sbjct: 28  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 138
Query: 362 CDL 364
            DL
Sbjct: 139 KDL 141

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT+ +Q   ++ + + Y  TV  +++  L + ++     V+L +WD +G 
Sbjct: 13  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  ++ FD++  ++ +S + +W+ +     ILD       LL+  K
Sbjct: 69  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-----ILDYCPSTRVLLIGCK 123
Query: 362 CDLPDRQVEINEIEAVCHQ 380
            DL   + +++ +  + HQ
Sbjct: 124 TDL---RTDLSTLMELSHQ 139

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 10  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 120
Query: 362 CDL 364
            DL
Sbjct: 121 KDL 123

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT+ +Q   ++ + + Y  TV  +++  L + ++     V+L +WD +G 
Sbjct: 14  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 69
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  ++ FD++  ++ +S + +W+ +     ILD       LL+  K
Sbjct: 70  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-----ILDYCPSTRVLLIGCK 124
Query: 362 CDLPDRQVEINEIEAVCHQ 380
            DL   + +++ +  + HQ
Sbjct: 125 TDL---RTDLSTLMELSHQ 140

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
            DL
Sbjct: 119 KDL 121

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 9   LVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 64
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 119
Query: 362 CDL 364
            DL
Sbjct: 120 KDL 122

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT+ +Q   ++ + + Y  TV  +++  L + ++     V+L +WD +G 
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR----VELSLWDTSGS 85
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  ++ FD++  ++ +S + +W+ +     ILD       LL+  K
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-----ILDYCPSTRVLLIGCK 140
Query: 362 CDLPDRQVEINEIEAVCHQ 380
            DL   + +++ +  + HQ
Sbjct: 141 TDL---RTDLSTLMELSHQ 156

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 11  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 121
Query: 362 CDL 364
            DL
Sbjct: 122 KDL 124

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+A+K
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANK 138
Query: 362 CDL 364
            DL
Sbjct: 139 KDL 141

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 10  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 65
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 120
Query: 362 CDL 364
            DL
Sbjct: 121 KDL 123

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
           R +   +WD+ GQD+   + R YY N+DG I + D  +R+  +   +  H + ++  L +
Sbjct: 59  RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKD 118
Query: 350 GAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
             +   L+ A+K DLP                N MS  EV+ K HL      N+ +    
Sbjct: 119 AII---LVFANKQDLP----------------NAMSAAEVTEKLHLNTIRERNWFIQS-T 158
Query: 410 CSKR 413
           C+ R
Sbjct: 159 CATR 162

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 251 VGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSR 310
            GKT+ ++ F   + +D    T+G  F+ K L H+ +     KL IWD+ GQ       R
Sbjct: 29  AGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGQKSLRSYWR 80
Query: 311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP 365
            Y++++DG I + D  +R+  +     + +L S  + +  A    L+ A+K DLP
Sbjct: 81  NYFESTDGLIWVVDSADRQRXQDC---QRELQSLLVEERLAGATLLIFANKQDLP 132

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GKT+ ++ F   + +D    T+G  F+ K L H+ +     KL IWD+ G 
Sbjct: 4   LLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRGF-----KLNIWDVGGL 55
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R Y++++DG I + D  +R+  +     + +L S  + +  A    L+ A+K 
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIFANKQ 112
Query: 363 DLP 365
           DLP
Sbjct: 113 DLP 115

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + G    GKT++V      +F ++   TVG +        +K     V +++WDI GQ
Sbjct: 25  LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-------RKITKGNVTIKLWDIGGQ 77
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            R+  M   Y +     + M D  +++  E+     H+L  K  L     +P L+L +K 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNKR 134
Query: 363 DLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
           DLP   D +  I ++     Q   +    +S KE   I+ ++ +L+
Sbjct: 135 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ GQ
Sbjct: 325 ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 376
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R YY  + G I + D  +R   +   Q  H + +   + +  +   L+ A+K 
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII---LIFANKQ 433
Query: 363 DLPD 366
           DLPD
Sbjct: 434 DLPD 437

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F + Y  TV  ++    ++  +  G+ V+L +WD AGQ
Sbjct: 28  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 83
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++  K    N   +P +L+ +K
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFXPN---VPIILVGNK 138
Query: 362 CDL 364
            DL
Sbjct: 139 KDL 141

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +  F +++F   Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 8   LVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y     + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 64  EDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
            DL
Sbjct: 119 KDL 121

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 245 ITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR 304
           + G    GKT++V      +F ++   TVG +        +K     V +++WDI GQ R
Sbjct: 36  LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-------RKITKGNVTIKLWDIGGQPR 88
Query: 305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL 364
           +  M   Y +     + M D  +++  E+     H+L  K  L     +P L+L +K DL
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNKRDL 145
Query: 365 P---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
           P   D +  I ++     Q   +    +S KE   I+ ++ +L+
Sbjct: 146 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 189

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 3   ILMVGLDGAGKTTVLYKLKLGEVITTIP-TIG--FNVETVQYKN-----ISFTVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           DR   + R YY+N++G I + D  +R       +    + ++  L N A    L+ A+K 
Sbjct: 55  DRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAA---WLVFANKQ 111
Query: 363 DLPD 366
           DLP+
Sbjct: 112 DLPE 115

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 6   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 116
Query: 362 CDL 364
            DL
Sbjct: 117 KDL 119

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 6   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 61
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 116
Query: 362 CDL 364
            DL
Sbjct: 117 KDL 119

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 8   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
            DL
Sbjct: 119 KDL 121

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
           + +   +WD+ GQDR   + R YY+N++G I + D  +R       +    + ++  L N
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 350 GAMLPCLLLASKCDLPD 366
            A    L+ A+K DLP+
Sbjct: 119 AA---WLVFANKQDLPE 132

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ GQ
Sbjct: 15  ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 66
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   ++L  A+
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 121
Query: 361 KCDLPD 366
           K DLPD
Sbjct: 122 KQDLPD 127

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ GQ
Sbjct: 3   ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   ++L  A+
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 109
Query: 361 KCDLPD 366
           K DLPD
Sbjct: 110 KQDLPD 115

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++    ++  +  G+ V+L +WD AGQ
Sbjct: 8   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY----IADIEVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
            DL
Sbjct: 119 KDL 121

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ GQ
Sbjct: 3   ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R YY  + G I + D  +R   +   Q  H + +   + +  +   L+ A+K 
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII---LIFANKQ 111
Query: 363 DLPD 366
           DLPD
Sbjct: 112 DLPD 115

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ GQ
Sbjct: 16  ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   ++L  A+
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 122
Query: 361 KCDLPD 366
           K DLPD
Sbjct: 123 KQDLPD 128

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 8   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
            DL
Sbjct: 119 KDL 121

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 8   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 63
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++ + W  ++   C       +P +L+ +K
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
Query: 362 CDL 364
            DL
Sbjct: 119 KDL 121

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
           + +  ++WD+ GQ       R Y+ ++D  I + D T+R         KH+L    +LD 
Sbjct: 64  KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA---KHEL--YALLDE 118
Query: 350 GAMLPCLLL--ASKCDLPD--RQVEINEIEAVCHQYNFMSW--IEVSSKEHLMIEDSMNF 403
             +   LLL  A+K DLPD   + EI E   V    N  +W  ++ SSK    + + M++
Sbjct: 119 DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMDW 177
Query: 404 LVDRI 408
           LV+R+
Sbjct: 178 LVERL 182

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ICFTVWDVGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           DR   + + Y+QN+ G I + D  +R+  + V     +L    ++D       LL A+K 
Sbjct: 72  DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA---DELQKMLLVDELRDAVLLLFANKQ 128
Query: 363 DLPD 366
           DLP+
Sbjct: 129 DLPN 132

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + I G + VGK++ V  F+  +F+  Y  T+   +              V ++I D AGQ
Sbjct: 31  LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR----HQATIDDEVVSMEILDTAGQ 86
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +  I     + +  +G ++++D+T+R SFE V+  K+ LD    +     +  +L+ +K 
Sbjct: 87  EDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE---IKKPKNVTLILVGNKA 142
Query: 363 DLP-DRQVEINEIEAVCHQ 380
           DL   RQV   E E +  +
Sbjct: 143 DLDHSRQVSTEEGEKLATE 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN 349
           + +   +WD+ GQDR   + R YY+N++G I + D  +R       +    + ++  L N
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 350 GAMLPCLLLASKCDLPD 366
                 L+ A+K DLP+
Sbjct: 119 AV---WLVFANKQDLPE 132

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    + +F + Y  TV  ++    ++  +  GR V+L +WD AGQ
Sbjct: 13  LVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY----VADVEVDGRRVELALWDTAGQ 68
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y +S+  +I F +    S E+V + W  ++   C       +P +L+  K
Sbjct: 69  EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPIILVGCK 123
Query: 362 CDL 364
            DL
Sbjct: 124 VDL 126

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL  G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ GQ
Sbjct: 3   ILXLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R YY  + G I + D  +R   +   Q  H + +     +  +   L+ A+K 
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII---LIFANKQ 111
Query: 363 DLPD 366
           DLPD
Sbjct: 112 DLPD 115

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 23  ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 74
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R   + VV+ + +L      D       L+ A+K 
Sbjct: 75  DKIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQ 131
Query: 363 DLPD 366
           DLP+
Sbjct: 132 DLPN 135

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 168 ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 219
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R   E V + + +L      D       L+ A+K 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 276
Query: 363 DLPD 366
           DLP+
Sbjct: 277 DLPN 280

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ G 
Sbjct: 5   ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGL 56
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   ++L  A+
Sbjct: 57  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 111
Query: 361 KCDLPD 366
           K DLPD
Sbjct: 112 KQDLPD 117

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ G 
Sbjct: 6   ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGL 57
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   ++L  A+
Sbjct: 58  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 112
Query: 361 KCDLPD 366
           K DLPD
Sbjct: 113 KQDLPD 118

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      K   +      V F+ + +++K      VK  +WD+ G 
Sbjct: 16  ILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKN-----VKFNVWDVGGL 67
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL--AS 360
           D+   + R YY  + G I + D  +R   +   Q  H      I+++  M   ++L  A+
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHR-----IINDREMRDAIILIFAN 122
Query: 361 KCDLPD 366
           K DLPD
Sbjct: 123 KQDLPD 128

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 19  ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 70
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R   E V + + +L      D       L+ A+K 
Sbjct: 71  DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 363 DLPD 366
           DLP+
Sbjct: 128 DLPN 131

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 54
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R   E V + + +L      D       L+ A+K 
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 363 DLPD 366
           DLP+
Sbjct: 112 DLPN 115

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +     T+G  F+ + + +K      +   +WD+ GQ
Sbjct: 20  ILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN-----ISFTVWDVGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R   E V + + +L      D       L+ A+K 
Sbjct: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 363 DLPD 366
           DLP+
Sbjct: 129 DLPN 132

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 241 YPILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           Y +++ G+  VGK++    F   +  +D+    +G D   + L         + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 300 AGQDRYI---CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
            G++ ++   CM     Q  D  +I++ +T+R SFE   + +  L      ++   +P +
Sbjct: 67  KGENEWLHDHCM-----QVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPII 118
Query: 357 LLASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           L+ +K DL   R+V ++E  A    ++   +IE S+     ++ ++  L + I+   R+ 
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSA----AVQHNVKELFEGIVRQVRLR 173
Query: 416 EEAVERKSSIRLS 428
            ++ E K+  RL+
Sbjct: 174 RDSKE-KNERRLA 185

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ ++       + +   T G  F+ K +  + +     KL +WDI GQ
Sbjct: 20  ILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQGF-----KLNVWDIGGQ 71
Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            +     R Y++N+D  I + D  +RK FE   Q   +L      +  + +P L+ A+K 
Sbjct: 72  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ---ELTELLEEEKLSCVPVLIFANKQ 128
Query: 363 DL 364
           DL
Sbjct: 129 DL 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-16
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-13
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-16
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-12
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-51
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-17
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	9e-14
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-45
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-15
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-12
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-16
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-12
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-45
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-16
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	8e-12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-45
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-15
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-12
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-45
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-16
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-12
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-16
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	9e-12
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-44
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	7e-15
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-44
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-15
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-12
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-44
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-15
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-11
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-44
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-17
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-11
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	9e-44
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-16
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-12
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-43
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-16
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-43
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-15
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-11
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-43
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-16
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	8e-13
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-43
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-16
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-11
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-43
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-16
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-12
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	6e-43
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-15
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-11
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-43
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	9e-16
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-11
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-43
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-15
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-11
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-17
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-12
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-42
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	8e-16
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-42
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-15
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-11
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-42
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-16
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	7e-12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-42
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-16
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-11
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	6e-42
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-14
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-11
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-42
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-16
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	8e-12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	7e-42
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-16
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-12
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-42
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	9e-17
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-12
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-41
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-11
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-07
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-41
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-10
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-07
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-41
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-14
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-10
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-41
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	6e-11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-07
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-41
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-09
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	7e-41
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-16
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-12
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	8e-41
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	8e-14
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-11
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-40
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-15
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-11
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-40
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	5e-17
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-12
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-40
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-10
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-40
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-15
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-11
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	4e-40
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-13
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-09
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-40
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-10
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-07
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-40
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-16
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-11
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	8e-40
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-16
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-11
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-39
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-11
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-09
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-39
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-16
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	5e-12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-39
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	5e-12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-09
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-39
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-16
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-11
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-39
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-10
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-10
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-06
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-38
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-10
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-07
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-38
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-10
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-07
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-38
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-10
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-07
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-38
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-10
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-07
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-38
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-10
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-08
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-37
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-12
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-37
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-09
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-09
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-06
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	8e-36
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	4e-16
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-11
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-35
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	7e-09
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-06
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-35
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-09
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-35
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-14
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-09
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-35
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-09
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	8e-07
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-08
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	8e-07
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-34
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-04
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-31
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-05
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-04
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-30
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-09
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-06
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-29
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-04
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	8e-04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	9e-09
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-08
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-26
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-08
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	9e-06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-25
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-04
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-25
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-05
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	7e-25
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-07
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-24
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-07
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-24
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-08
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-05
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-24
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-07
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-24
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-24
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-07
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-05
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-24
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-07
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	9e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-23
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-22
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-07
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	8e-05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	7e-18
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	6e-15
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	6e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-09
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-09
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-09
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-09
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-09
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-07
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	5e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  173 bits (442), Expect = 1e-52
 Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 4/169 (2%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V +K+   YK T+G DF TK ++    G +   +Q+WD AGQ
Sbjct: 11  VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDTAGQ 68

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C++++D+TN  SFE++  W+ +      +++    P ++L +K 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 363 DLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           D  +  + V     + +      +     S+K  + ++ +   +    +
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           ++I GDS VGKTS +  +V +K+   YK T+G DF TK ++    G +   +Q+WD 
Sbjct: 11  VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDT 65

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           S  + +LK++++GDS VGKTS +  +V +K+   YK T+G DF TK
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK 48

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  173 bits (441), Expect = 5e-52
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 13/210 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK +       R V +QIWD AGQ
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWDTAGQ 67

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C+++FD+T   +F+++  W+ +   +    +    P ++L +K 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
           DL +RQV     +A C+  N + + E S+KE + +E +   +    +  +   E   E  
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 187

Query: 423 SSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
             I+L +             A   +  C C
Sbjct: 188 EPIKLDKNE----------RAKASAESCSC 207

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 75.0 bits (185), Expect = 7e-16
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK +       R V +QIWD
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV---MVDDRLVTMQIWD 63

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           + +LK++++GDS VGKTS +  +V  KF + YK T+G DF TK
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK 48

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  170 bits (434), Expect = 2e-51
 Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V +QIWD AGQ
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWDTAGQ 66

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ SD C++ F + + +SF+++  WK +      +      P ++L +K 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           D+ +RQV   E +A C       + E S+K+   +  +    V R++
Sbjct: 127 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 77.9 bits (193), Expect = 4e-17
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GD  VGK+S +  +V NKF     +T+GV+F  K L   +  G  V +QIWD
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL---EVDGHFVTMQIWD 62

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 68.3 bits (168), Expect = 9e-14
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           +   ++ K++++GD  VGK+S +  +V NKF     +T+GV+F  K L
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL 49

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  155 bits (393), Expect = 3e-45
 Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 9/182 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ILI G+S VGK+S +  F  + F      T+GVDF  K +      G   KL IWD AGQ
Sbjct: 18  ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI---SVDGNKAKLAIWDTAGQ 74

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T R +F  +  W ++L++ C       +  +L+ +K 
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKI 131

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
           D  +R+V+ NE      +++ M +IE S+K    ++ +   LV++II  +       E +
Sbjct: 132 DKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKII--QTPGLWESENQ 188

Query: 423 SS 424
           +S
Sbjct: 189 NS 190

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ILI G+S VGK+S +  F  + F      T+GVDF  K +      G   KL IWD
Sbjct: 18  ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI---SVDGNKAKLAIWD 70

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           D  T LKIL+IG+S VGK+S +  F  + F      T+GVDF  K +
Sbjct: 11  DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI 57

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  154 bits (391), Expect = 3e-45
 Identities = 44/168 (26%), Positives = 93/168 (55%), Gaps = 10/168 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G+  VGK+S +Q + +  F  +YK T+GVDF  + +   +     V+L +WD AGQ
Sbjct: 8   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQI---QVNDEDVRLMLWDTAGQ 64

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + +  +++ YY+ +  C+++F  T+R+SFE++  W+  + ++    +   +P  L+ +K 
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GD---IPTALVQNKI 119

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL D   ++  E E +  +   + +   S KE L + +   +L ++ +
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHL 166

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G+  VGK+S +Q + +  F  +YK T+GVDF  + +   +     V+L +WD
Sbjct: 8   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQI---QVNDEDVRLMLWD 60

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
            +K++V+G+  VGK+S +Q + +  F  +YK T+GVDF  +
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER 45

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  153 bits (390), Expect = 4e-45
 Identities = 54/174 (31%), Positives = 100/174 (57%), Gaps = 10/174 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQIWD AGQ
Sbjct: 6   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWDTAGQ 62

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L  LL+ +K 
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 118

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           D+  R V  ++ EA+  +   + +IE S+K    + +    L   I   ++++ 
Sbjct: 119 DMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--EKIDS 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 74.1 bits (183), Expect = 7e-16
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
            +  IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQIWD
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWD 58

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 62.6 bits (153), Expect = 8e-12
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           ++KIL+IGDS VGK+  +  FV++KF  ++  T+G+DF  K +
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV 45

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  154 bits (391), Expect = 5e-45
 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 295
            L  GDS VGKTS +  +   KF   +  TVG+DF  K +             G+ + LQ
Sbjct: 14  FLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQ 73

Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AG +R+  ++  +++++ G +++FDLTN +SF +V  W   L      +N      
Sbjct: 74  LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN---PDI 130

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           +L  +K DL D R V+  E   +  +Y  + + E S+     I  ++  L+D I+  KRM
Sbjct: 131 VLCGNKSDLEDQRAVKEEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM--KRM 187

Query: 415 EE 416
           E 
Sbjct: 188 ER 189

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRP 221
           YL   L  GDS VGKTS +  +   KF   +  TVG+DF  K +             G+ 
Sbjct: 10  YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69

Query: 222 VKLQIWD 228
           + LQ+WD
Sbjct: 70  IHLQLWD 76

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 63.4 bits (155), Expect = 6e-12
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           ++K L +GDS VGKTS +  +   KF   +  TVG+DF  K +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRV 53

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  153 bits (389), Expect = 7e-45
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD   GKTS    F Q  F   YK T+G+DF  + ++    G   V LQIWDI GQ
Sbjct: 9   IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDIGGQ 66

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                M   Y   + G ++++D+TN +SFE++  W   +  K   ++       L+ +K 
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVK-KVSEESETQPLVALVGNKI 125

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           DL   R ++  +    C +    S   VS+K    +      +   I+  K
Sbjct: 126 DLEHMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 74.9 bits (185), Expect = 5e-16
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           I++ GD   GKTS    F Q  F   YK T+G+DF  + ++    G   V LQIWDI
Sbjct: 9   IVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP--GNLNVTLQIWDI 63

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           LKI+V+GD   GKTS    F Q  F   YK T+G+DF  + +
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRI 48

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  153 bits (388), Expect = 1e-44
 Identities = 56/181 (30%), Positives = 104/181 (57%), Gaps = 12/181 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +LI GDS VGK+S +  F  N F  +Y  T+GVDF  + +   +  G  VKLQIWD AGQ
Sbjct: 12  LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWDTAGQ 68

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ +SF +V +W H+++  C  D+      +L+ +K 
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCR---ILVGNKN 123

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           D P+ + VE  +      Q   +   E S+KE++ +E+  N + + ++  +  ++   ++
Sbjct: 124 DDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL--RAKKDNLAKQ 180

Query: 422 K 422
           +
Sbjct: 181 Q 181

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 74.9 bits (185), Expect = 5e-16
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +L  +LI GDS VGK+S +  F  N F  +Y  T+GVDF  + +   +  G  VKLQIWD
Sbjct: 8   HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV---EINGEKVKLQIWD 64

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+L+IGDS VGK+S +  F  N F  +Y  T+GVDF  + +
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV 51

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  154 bits (391), Expect = 1e-44
 Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 14/190 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K +       +        V LQ
Sbjct: 28  LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87

Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AGQ+R+  ++  +++++ G ++MFDLT+++SF +V  W   L +    +N      
Sbjct: 88  LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN---PDI 144

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           +L+ +K DLPD R+V   +   +  +Y  + + E S+     +E ++  L+D I+  KRM
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KRM 201

Query: 415 EEEAVERKSS 424
           E+   + +  
Sbjct: 202 EQCVEKTQIP 211

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 72.4 bits (178), Expect = 7e-15
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRP 221
           YL  +L  GDS VGKT+++  +  NKF   +  TVG+DF  K +       +        
Sbjct: 24  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83

Query: 222 VKLQIWD 228
           V LQ+WD
Sbjct: 84  VHLQLWD 90

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           ++K+L +GDS VGKT+++  +  NKF   +  TVG+DF  K +
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV 67

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  153 bits (388), Expect = 2e-44
 Identities = 54/173 (31%), Positives = 98/173 (56%), Gaps = 10/173 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I G   VGKTS ++ F  + F +  K+TVGVDF  K +   +  G+ ++LQIWD AGQ
Sbjct: 29  VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTV---ELRGKKIRLQIWDTAGQ 85

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+++ G I+++D+T +++F+ + +W   +D     D       LL+ +K 
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED----AELLLVGNKL 141

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           D    R++   + E    Q   M + E S+K++  +++    LVD I+  K+M
Sbjct: 142 DCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL--KKM 192

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++I G   VGKTS ++ F  + F +  K+TVGVDF  K +   +  G+ ++LQIWD
Sbjct: 29  VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTV---ELRGKKIRLQIWD 81

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 86  SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           S+   PR S       P  A+  L++++IG   VGKTS ++ F  + F +  K+TVGVDF
Sbjct: 11  SSGLVPRGS-------PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF 63

Query: 146 STKLL 150
             K +
Sbjct: 64  KIKTV 68

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  152 bits (387), Expect = 4e-44
 Identities = 53/197 (26%), Positives = 105/197 (53%), Gaps = 10/197 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQ+WD AGQ
Sbjct: 23  ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQLWDTAGQ 79

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     ++ A L  LL+ +K 
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA--NDEAQL--LLVGNKS 135

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
           D+  R V  ++ EA+  +   + +IE S+K    + +    L   I   ++++   +   
Sbjct: 136 DMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ--EKIDSNKLVGV 192

Query: 423 SSIRLSEETLRDDQPKK 439
            + +    ++       
Sbjct: 193 GNGKEGNISINSGSGNS 209

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQ+WD
Sbjct: 23  ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQLWD 75

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 88  SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           S     S      +  D+  ++KIL+IGDS VGK+  +  FV++KF  ++  T+G+DF  
Sbjct: 2   SGLRTVSASSGNGKSYDS--IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI 59

Query: 148 KLL 150
           K +
Sbjct: 60  KTV 62

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  152 bits (386), Expect = 4e-44
 Identities = 58/175 (33%), Positives = 101/175 (57%), Gaps = 10/175 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD++VGKT  VQ F    F +   +T+GVDF+ K L   +  G+ VKLQIWD AGQ
Sbjct: 32  LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL---EIQGKRVKLQIWDTAGQ 88

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +++ YY++++G I+ +D+T R SF SV  W  D+      +    +  LL+ +K 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN----IVQLLIGNKS 144

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           DL + R+V + E +++   Y+ +  IE S+K+   +E++   +   +I   R   
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI--MRHGG 197

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)

Query: 151 SHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
            H   G  P G+  P +   +L  +++ GD++VGKT  VQ F    F +   +T+GVDF+
Sbjct: 8   HHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFT 67

Query: 209 TKLLSHKKYGGRPVKLQIWD 228
            K L   +  G+ VKLQIWD
Sbjct: 68  MKTL---EIQGKRVKLQIWD 84

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 86  SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           S+   PR S           + + K++++GD++VGKT  VQ F    F +   +T+GVDF
Sbjct: 11  SSGLVPRGS----GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDF 66

Query: 146 STKLL 150
           + K L
Sbjct: 67  TMKTL 71

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  150 bits (382), Expect = 9e-44
 Identities = 47/183 (25%), Positives = 99/183 (54%), Gaps = 11/183 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            L+ G++  GK+  +  F++ KF D+  +T+GV+F +K++     GG+ VKLQIWD AGQ
Sbjct: 13  FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII---NVGGKYVKLQIWDTAGQ 69

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++R YY+ + G ++++D+T+R+++ ++  W  D           ++  +L  +K 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA--SQNIVI--ILCGNKK 125

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           DL   R+V   E      +   + ++E S+     +E++      +I+   ++E   ++ 
Sbjct: 126 DLDADREVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQCARKIL--NKIESGELDP 182

Query: 422 KSS 424
           +  
Sbjct: 183 ERM 185

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +L   L+ G++  GK+  +  F++ KF D+  +T+GV+F +K++     GG+ VKLQIWD
Sbjct: 9   FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII---NVGGKYVKLQIWD 65

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 16/43 (37%), Positives = 30/43 (69%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K LVIG++  GK+  +  F++ KF D+  +T+GV+F +K++
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII 52

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  150 bits (382), Expect = 1e-43
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 11/175 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G+S+VGKTS++  +  + F   + +TVG+DF  K +       + +KLQIWD AGQ
Sbjct: 25  LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV---YRHDKRIKLQIWDTAGQ 81

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G ++M+D+ N++SF +V  W   + +     + A +  +L+ +KC
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQV--ILVGNKC 137

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           DL D R V   +   +        + E S+KE++ ++     LVD I   ++M E
Sbjct: 138 DLEDERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC--EKMNE 189

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y+  +L+ G+S+VGKTS++  +  + F   + +TVG+DF  K +       + +KLQIWD
Sbjct: 21  YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV---YRHDKRIKLQIWD 77

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 86  SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
            +S        G  PR SD   + K+L+IG+S+VGKTS++  +  + F   + +TVG+DF
Sbjct: 2   GSSHHHHHHSSGLVPRGSDY--MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 59

Query: 146 STKLL 150
             K +
Sbjct: 60  KVKTV 64

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  150 bits (381), Expect = 2e-43
 Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 16/211 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD AGQ
Sbjct: 11  LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTAGQ 67

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ S G II++D+T+++SF  V  W  ++D          +  LL+ +KC
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLVGNKC 123

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           DL D R VE +  +        M ++E S+ +   +ED+   +  +I   + M ++ +  
Sbjct: 124 DLKDKRVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK--ESMSQQNLNE 180

Query: 422 KSSIRLSEETLRDDQPKKLVPADKVSTYCWC 452
            +  +  +  +              +  C C
Sbjct: 181 TTQKKEDKGNVNLKGQSL-----TNTGGCCC 206

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD
Sbjct: 11  LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWD 63

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+L+IG+S VGK+  +  F  + + ++Y +T+GVDF  K +
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV 50

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  150 bits (380), Expect = 3e-43
 Identities = 46/179 (25%), Positives = 97/179 (54%), Gaps = 11/179 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            L+ G +  GK+  +  F++NKF  +  +T+GV+F ++++     GG+ VKLQIWD AGQ
Sbjct: 28  FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV---NVGGKTVKLQIWDTAGQ 84

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++R YY+ + G ++++D+T+R+++ S+  W  D  +    +    +  +L  +K 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN----IVVILCGNKK 140

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
           DL   R+V   E      +   + ++E S+     +E++       I+   +++   ++
Sbjct: 141 DLDPEREVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTIL--NKIDSGELD 196

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +L   L+ G +  GK+  +  F++NKF  +  +T+GV+F ++++     GG+ VKLQIWD
Sbjct: 24  FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVV---NVGGKTVKLQIWD 80

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 66.1 bits (162), Expect = 8e-13
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 88  SPSPRASVIGFEPRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
           S        G  PR S   + + K LVIG +  GK+  +  F++NKF  +  +T+GV+F 
Sbjct: 4   SHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG 63

Query: 147 TKLL 150
           ++++
Sbjct: 64  SRVV 67

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  149 bits (378), Expect = 3e-43
 Identities = 52/182 (28%), Positives = 101/182 (55%), Gaps = 11/182 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ GDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+ +KLQIWD AGQ
Sbjct: 11  LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTAGQ 67

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G ++++D+TN KSF+++  W  +++             ++L +KC
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA--SADVEK--MILGNKC 123

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           D+ D RQV     E +   Y  + ++E S+K ++ +E++   L   I    +M++     
Sbjct: 124 DVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK--AKMDKNWKAT 180

Query: 422 KS 423
            +
Sbjct: 181 AA 182

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 74.2 bits (183), Expect = 8e-16
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           YL  +L+ GDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+ +KLQIWD
Sbjct: 7   YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWD 63

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+L+IGDS VGKT  +  F ++ F   + +T+G+DF  + +
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI 50

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  149 bits (378), Expect = 5e-43
 Identities = 53/173 (30%), Positives = 97/173 (56%), Gaps = 11/173 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD AGQ
Sbjct: 36  LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAGQ 92

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D     +    +  LL+ +KC
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKC 148

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           DL   + V+    +        + ++E S+K    +E S   +   I   KRM
Sbjct: 149 DLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--KRM 198

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
           GRP  + +P     YL  +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +  
Sbjct: 20  GRPMSSMNP--EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI-- 75

Query: 215 KKYGGRPVKLQIWD 228
            +  G+ +KLQIWD
Sbjct: 76  -ELDGKTIKLQIWD 88

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+L+IGDS VGK+  +  F  + + ++Y +T+GVDF  + +
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 75

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  150 bits (380), Expect = 6e-43
 Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 11/183 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS VGK++ +  F +N+F  + K+T+GV+F+T+ L   +  G+ +K QIWD AGQ
Sbjct: 16  IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL---EIEGKRIKAQIWDTAGQ 72

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G +I++D++   S+E+   W  +L      +    +   L+ +K 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN----VAVGLIGNKS 128

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           DL   R V   E +    +   + + E S+     ++ +   L++ I   +++ +  ++ 
Sbjct: 129 DLAHLRAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIY--QKVSKHQMDL 185

Query: 422 KSS 424
             S
Sbjct: 186 GDS 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GDS VGK++ +  F +N+F  + K+T+GV+F+T+ L   +  G+ +K QIWD
Sbjct: 16  IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL---EIEGKRIKAQIWD 68

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 19/43 (44%), Positives = 33/43 (76%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + KI++IGDS VGK++ +  F +N+F  + K+T+GV+F+T+ L
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL 55

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  148 bits (377), Expect = 6e-43
 Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 11/179 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD AGQ
Sbjct: 19  LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWDTAGQ 75

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+++SF +V QW  ++D     +    +  LL+ +KC
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKC 131

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
           DL   + V+    +        + ++E S+K    +E S   +   I   KRM   A  
Sbjct: 132 DLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK--KRMGPGATA 187

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 74.6 bits (184), Expect = 9e-16
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +L+ GDS VGK+  +  F  + + ++Y +T+GVDF  + +   +  G+ +KLQIWD
Sbjct: 19  LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI---ELDGKTIKLQIWD 71

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+L+IGDS VGK+  +  F  + + ++Y +T+GVDF  + +
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 58

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  148 bits (377), Expect = 7e-43
 Identities = 57/175 (32%), Positives = 99/175 (56%), Gaps = 11/175 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +LI G+S+VGKTS++  +  + F   + +TVG+DF  K +       + VKLQIWD AGQ
Sbjct: 26  LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV---YRHEKRVKLQIWDTAGQ 82

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G I+M+D+TN +SF +V  W   + +     + A +  +L+ +KC
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS--WDNAQV--ILVGNKC 138

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           D+ + R V   + + +  Q     + E S+KE++ +  +   LVD I    +M +
Sbjct: 139 DMEEERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAIC--DKMSD 190

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y+  +LI G+S+VGKTS++  +  + F   + +TVG+DF  K +       + VKLQIWD
Sbjct: 22  YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV---YRHEKRVKLQIWD 78

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+L+IG+S+VGKTS++  +  + F   + +TVG+DF  K +
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV 65

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  147 bits (374), Expect = 1e-42
 Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            +I GD  VGK+  +  F + KF+ +  +T+GV+F T+++   +  G+ +KLQIWD AGQ
Sbjct: 18  YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---EVSGQKIKLQIWDTAGQ 74

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++R YY+ + G ++++D+T R ++  +  W  D  +    +       +L+ +K 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIILIGNKA 130

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL   R V   E +    +   + ++E S+K    +ED+      +I 
Sbjct: 131 DLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIY 177

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 77.2 bits (191), Expect = 6e-17
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)

Query: 159 PYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
           P G+ +     SY+   +I GD  VGK+  +  F + KF+ +  +T+GV+F T+++   +
Sbjct: 2   PLGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII---E 58

Query: 217 YGGRPVKLQIWD 228
             G+ +KLQIWD
Sbjct: 59  VSGQKIKLQIWD 70

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 63.7 bits (156), Expect = 4e-12
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K ++IGD  VGK+  +  F + KF+ +  +T+GV+F T+++
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 57

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  148 bits (375), Expect = 1e-42
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ G++ VGKT  V+ F Q  F      T+GVDF  K +   +  G  VKLQIWD AGQ
Sbjct: 29  IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDTAGQ 85

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +++ YY++++  I+ +D+T  +SF  + +W  +++          +  +L+ +K 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VITVLVGNKI 141

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           DL + R+V     E      + M ++E S+KE   +E     L  R+I      +  +  
Sbjct: 142 DLAERREVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI--SEARQNTLVN 198

Query: 422 KSS 424
             S
Sbjct: 199 NVS 201

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 75.0 bits (185), Expect = 8e-16
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 151 SHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
            H  +          ++   +L  I++ G++ VGKT  V+ F Q  F      T+GVDF 
Sbjct: 5   HHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM 64

Query: 209 TKLLSHKKYGGRPVKLQIWD 228
            K +   +  G  VKLQIWD
Sbjct: 65  IKTV---EINGEKVKLQIWD 81

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 86  SNSPSPRASVIGFEPRPSDAE--TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143
           S+      S  G  PR S  +   + KI++IG++ VGKT  V+ F Q  F      T+GV
Sbjct: 3   SSHHHHHHSS-GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 61

Query: 144 DFSTKLL 150
           DF  K +
Sbjct: 62  DFMIKTV 68

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  148 bits (375), Expect = 2e-42
 Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ILI G+S+VGKTS++  +  + F   + +TVG+DF  K +       + +KLQIWD AG 
Sbjct: 11  ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI---YRNDKRIKLQIWDTAGL 67

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G I+M+D+TN +SF +V  W   + +     + A +  LL+ +KC
Sbjct: 68  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQV--LLVGNKC 123

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           D+ D R V       +        + E S+K+++ ++ +   LVD I   ++M E     
Sbjct: 124 DMEDERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC--EKMSESLDTA 180

Query: 422 KSS 424
             +
Sbjct: 181 DPA 183

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y+  ILI G+S+VGKTS++  +  + F   + +TVG+DF  K +       + +KLQIWD
Sbjct: 7   YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI---YRNDKRIKLQIWD 63

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + KIL+IG+S+VGKTS++  +  + F   + +TVG+DF  K +
Sbjct: 8   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 50

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  147 bits (373), Expect = 2e-42
 Identities = 47/176 (26%), Positives = 92/176 (52%), Gaps = 11/176 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G+S VGKT+ +  F +N+F  + + T+GV+FST+ +     G   VK QIWD AG 
Sbjct: 28  VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWDTAGL 84

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G +++FDLT  +++  V +W  +L           +  +L+ +K 
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
           DL   R+V   E          + ++E S+ +   +E +   ++  I    ++ ++
Sbjct: 141 DLSQAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIF--AKVSKQ 193

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G+S VGKT+ +  F +N+F  + + T+GV+FST+ +     G   VK QIWD
Sbjct: 28  VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV---MLGTAAVKAQIWD 80

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 97  GFEPRPSDA-ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           G  PR S+    V K+++IG+S VGKT+ +  F +N+F  + + T+GV+FST+ +
Sbjct: 13  GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV 67

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  147 bits (374), Expect = 2e-42
 Identities = 49/183 (26%), Positives = 105/183 (57%), Gaps = 11/183 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD AGQ
Sbjct: 8   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTAGQ 64

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G ++++D+    ++E+V +W  +L      +    +  +L+ +K 
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNKS 120

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           DL   R V  +E  A   + N +S+IE S+ +   +E++   ++  I   + + ++ +  
Sbjct: 121 DLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY--RIVSQKQIAD 177

Query: 422 KSS 424
           +++
Sbjct: 178 RAA 180

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 5/60 (8%)

Query: 171 YL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           YL  +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD
Sbjct: 4   YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWD 60

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 17/43 (39%), Positives = 32/43 (74%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K+++IGDS VGK++ +  F +N+F    K+T+GV+F+T+ +
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI 47

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  147 bits (373), Expect = 6e-42
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
             + +++ GD   GKT++V+  +  +F   Y  T+GV+    +         P+K  +WD
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF---HTNRGPIKFNVWD 70

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
            AGQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C  +N   +P +L 
Sbjct: 71  TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--EN---IPIVLC 125

Query: 359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
            +K D+ DR+V+      V H+   + + ++S+K +   E    +L  ++I       E 
Sbjct: 126 GNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI--GDPNLEF 181

Query: 419 VERKS 423
           V   +
Sbjct: 182 VAMPA 186

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
             P     +++ GD   GKT++V+  +  +F   Y  T+GV+    +         P+K 
Sbjct: 10  GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF---HTNRGPIKF 66

Query: 225 QIWD 228
            +WD
Sbjct: 67  NVWD 70

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 99  EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
                + +   K++++GD   GKT++V+  +  +F   Y  T+GV+    + 
Sbjct: 6   SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF 57

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  146 bits (370), Expect = 6e-42
 Identities = 46/175 (26%), Positives = 93/175 (53%), Gaps = 11/175 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            +I GD+ VGK+  +  F   +F   +  T+GV+F  +++      G+ +KLQIWD AGQ
Sbjct: 24  YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV---NIDGKQIKLQIWDTAGQ 80

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + +  ++R YY+ + G ++++D+T R++F  +  W  D       +    +  +L+ +K 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN----MVIMLIGNKS 136

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           DL   R V+  E EA   ++  + ++E S+K    +E++       I   +++++
Sbjct: 137 DLESRRDVKREEGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEIY--RKIQQ 188

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 157 GRPYGTFSPIQTPSY-----LILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
              +   S    P        I+I GD+ VGK+  +  F   +F   +  T+GV+F  ++
Sbjct: 4   SHHHHHHSSGLVPRGSYLFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM 62

Query: 212 LSHKKYGGRPVKLQIWD 228
           +      G+ +KLQIWD
Sbjct: 63  V---NIDGKQIKLQIWD 76

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 63.0 bits (154), Expect = 8e-12
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           + K ++IGD+ VGK+  +  F   +F   +  T+GV+F  +++
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV 63

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  146 bits (370), Expect = 7e-42
 Identities = 47/167 (28%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +   +  G+ +K QIWD AG 
Sbjct: 32  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI---QVDGKTIKAQIWDTAGL 88

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++  YY+ + G ++++D+    ++E+V +W  +L      +    +  +L+ +K 
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNKS 144

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DL   R V  +E  A   +   +S+IE S+ +   +E +   ++  I
Sbjct: 145 DLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 190

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
           GR  GT        YL  +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+ +  
Sbjct: 16  GRAMGTRD--DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-- 71

Query: 215 KKYGGRPVKLQIWD 228
            +  G+ +K QIWD
Sbjct: 72  -QVDGKTIKAQIWD 84

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 13/79 (16%)

Query: 72  HKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQN 131
           H H + +P                        + + + K+++IGDS VGK++ +  F +N
Sbjct: 6   HHHHHGIPLPGRAMGTRDD-------------EYDYLFKVVLIGDSGVGKSNLLSRFTRN 52

Query: 132 KFLDNYKNTVGVDFSTKLL 150
           +F    K+T+GV+F+T+ +
Sbjct: 53  EFNLESKSTIGVEFATRSI 71

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  146 bits (370), Expect = 7e-42
 Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 15/174 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD+ VGK+S++    +N+F +N   T+GVDF  K L      G    LQ+WD AGQ
Sbjct: 31  IVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL---IVDGERTVLQLWDTAGQ 87

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +++ Y++ +DG ++++D+T  KSF ++ +W   ++          +P +L+ +K 
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLVGNKA 143

Query: 363 DLPD-------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           D+ D       + V  +  E +   Y    + E S+K+   I +++  L   + 
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVK 196

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 146 STKLLSHKKYGGRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTV 203
           S+    H   G  P G+ +   +      I++ GD+ VGK+S++    +N+F +N   T+
Sbjct: 3   SSHHHHHHSSGLVPRGS-AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61

Query: 204 GVDFSTKLLSHKKYGGRPVKLQIWD 228
           GVDF  K L      G    LQ+WD
Sbjct: 62  GVDFQMKTL---IVDGERTVLQLWD 83

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 86  SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           S+   PR S      +   ++   KI++ GD+ VGK+S++    +N+F +N   T+GVDF
Sbjct: 11  SSGLVPRGS-----AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF 65

Query: 146 STKLL 150
             K L
Sbjct: 66  QMKTL 70

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  145 bits (369), Expect = 1e-41
 Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 8/199 (4%)

Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
           P Q   Y +++ G   VGK+S V  FV+  F D Y  T+   +   +            L
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI----SCDKSVCTL 58

Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
           QI D  G  ++  M R+        I++F +T+++S E +      +    I  +   +P
Sbjct: 59  QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ--IKGSVEDIP 116

Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
            +L+ +KCD   R+V+  E +AV  ++   +++E S+K +  +++    L+  +   + M
Sbjct: 117 VMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELL-TLETRRNM 174

Query: 415 EEEAVERKSSIRLSEETLR 433
                 ++S  +   + ++
Sbjct: 175 SLNIDGKRSGKQKRTDRVK 193

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 224
           P Q+  Y +++ G   VGK+S V  FV+  F D Y  T+   +   +            L
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI----SCDKSVCTL 58

Query: 225 QIWD 228
           QI D
Sbjct: 59  QITD 62

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           +++V G   VGK+S V  FV+  F D Y  T+   +   +
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVI 49

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  144 bits (365), Expect = 2e-41
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  Y +++ G   VGK++     +QN F+D    T+   +  ++       G    L I 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQV----VIDGETCLLDIL 56

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  M   Y +  +G + +F + N KSFE + Q++  +      D+   +P +L
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVL 113

Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           + +K DL  R VE  + + +   Y  + +IE S+K    +ED+   LV  I 
Sbjct: 114 VGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIR 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
             Y +++ G   VGK++     +QN F+D    T+   +  ++       G    L I D
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQV----VIDGETCLLDILD 57

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           T  K++V+G   VGK++     +QN F+D    T+   +
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY 40

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  143 bits (364), Expect = 3e-41
 Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 12/177 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
           +++ GDS VGKT  +  F    F    + +TVG+DF  K+L      G  VKLQ+WD AG
Sbjct: 13  VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL---DVDGVKVKLQMWDTAG 69

Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q+R+  ++  YY+++   ++++D+TN+ SF+++  W  ++       +   L  +LL +K
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVAL--MLLGNK 125

Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
            D    R V+  + E +  +Y  + ++E S+K  L ++ +   +   +   +R  + 
Sbjct: 126 VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK--RRSMKA 179

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GDS VGKT  +  F    F    + +TVG+DF  K+L      G  VKLQ+WD
Sbjct: 13  VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL---DVDGVKVKLQMWD 66

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLL 150
           K++++GDS VGKT  +  F    F    + +TVG+DF  K+L
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL 53

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  143 bits (364), Expect = 5e-41
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 231 CTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR 290
             L    +  Y +++ G   VGK++     +QN F+D Y  T+   +  ++       G 
Sbjct: 12  ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VIDGE 67

Query: 291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG 350
              L I D AGQ+ Y  M   Y +  +G + +F + N KSF  +  ++  +      D+ 
Sbjct: 68  TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD- 126

Query: 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
             +P +L+ +KCDLP R V+  +   +   Y  + +IE S+K    +ED+   LV  I  
Sbjct: 127 --VPMVLVGNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVREIR- 182

Query: 411 SKRMEEE 417
            +   ++
Sbjct: 183 -QYRMKK 188

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 152 HKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
           H    GR    F  +    Y +++ G   VGK++     +QN F+D Y  T+   +  ++
Sbjct: 5   HHHSSGRENLYFQGM--TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62

Query: 212 LSHKKYGGRPVKLQIWD 228
                  G    L I D
Sbjct: 63  ----VIDGETCLLDILD 75

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 97  GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           G E       T  K++V+G   VGK++     +QN F+D Y  T+   +  ++
Sbjct: 10  GRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  143 bits (364), Expect = 5e-41
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++     +QN F+D Y  T+   +  ++       G    L I D A
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VIDGETCLLDILDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ Y  M   Y +  +G + +F + N KSFE +  ++  +      ++   +P +L+ +
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED---VPMVLVGN 117

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
           KCDLP R V+  + + +   Y  + +IE S+K    ++D+   LV  I   K  E+ + +
Sbjct: 118 KCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIR--KHKEKMSKD 174

Query: 421 RKSS 424
            K  
Sbjct: 175 GKKK 178

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ G   VGK++     +QN F+D Y  T+   +  ++       G    L I D
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VIDGETCLLDILD 58

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
             T  K++V+G   VGK++     +QN F+D Y  T+   +
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY 41

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  142 bits (361), Expect = 7e-41
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 9/168 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G+  VGKTS V  + +NKF D +  T+G  F TK L     GG+ V L IWD AGQ
Sbjct: 9   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKL---NIGGKRVNLAIWDTAGQ 65

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +  +YY++S+G I+++D+T+  SF+ V  W  +L       N   L   ++ +K 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML--GNEICL--CIVGNKI 121

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL   R V I E E+             S+K++  IE+    L  R+I
Sbjct: 122 DLEKERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMI 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 74.8 bits (185), Expect = 4e-16
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G+  VGKTS V  + +NKF D +  T+G  F TK L     GG+ V L IWD
Sbjct: 9   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKL---NIGGKRVNLAIWD 61

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 62.5 bits (153), Expect = 8e-12
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           K++++G+  VGKTS V  + +NKF D +  T+G  F TK
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK 46

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  143 bits (364), Expect = 8e-41
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 243 ILITGDSTVGKTSYVQGFV--QNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW--D 298
           + + G++TVGK++ +  F    +KFL +Y  T GV+     +         V ++++  D
Sbjct: 23  VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV---TIPDTTVSVELFLLD 79

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
            AG D Y      Y+      I++FD+++ +SFES   W   L S        +   +L+
Sbjct: 80  TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL-RAVLV 138

Query: 359 ASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKE 393
           A+K DLP    QV ++  +        + + +VS+  
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNT-LDFFDVSANP 174

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFV--QNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 222
            T +    + + G++TVGK++ +  F    +KFL +Y  T GV+     +         V
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV---TIPDTTV 71

Query: 223 KLQIW 227
            ++++
Sbjct: 72  SVELF 76

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 98  FEPRPSDAETVLKILVIGDSTVGKTSYVQGFV--QNKFLDNYKNTVGVDFSTKLL 150
            +P    A    K+ V+G++TVGK++ +  F    +KFL +Y  T GV+     +
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV 64

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  143 bits (362), Expect = 1e-40
 Identities = 51/198 (25%), Positives = 101/198 (51%), Gaps = 11/198 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +       R V+LQ+WD AG 
Sbjct: 19  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGL 75

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   Y ++S   ++++D+TN  SF+   +W  D+ ++    +  ++  +L+ +K 
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER--GSDVII--MLVGNKT 131

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVER 421
           DL D RQV I E E    + N + +IE S+K    ++     +   +        +   R
Sbjct: 132 DLADKRQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP--GMESTQDRSR 188

Query: 422 KSSIRLSEETLRDDQPKK 439
           +  I +  E  ++    +
Sbjct: 189 EDMIDIKLEKPQEQPVSE 206

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 157 GRPYGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 214
           G    T      P     ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +  
Sbjct: 1   GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM-- 58

Query: 215 KKYGGRPVKLQIWD 228
                R V+LQ+WD
Sbjct: 59  -YLEDRTVRLQLWD 71

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
              +     K++ +G+ +VGKTS +  F+ + F + Y+ T+G+DF +K
Sbjct: 9   DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK 56

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  141 bits (359), Expect = 2e-40
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 9/152 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS VGKT     F   +F D  + T+GVDF  + +      G  +K+Q+WD AGQ
Sbjct: 23  IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV---DIDGERIKIQLWDTAGQ 79

Query: 303 DRY-ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           +R+   M + YY+N    + ++D+TN  SF S+  W  +            +P +L+ +K
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNK 136

Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK 392
           CDL    QV  +  +     ++ M   E S+K
Sbjct: 137 CDLRSAIQVPTDLAQKFADTHS-MPLFETSAK 167

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 78.0 bits (193), Expect = 5e-17
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 156 GGRP--YGTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
           G     +G+  P  + S +  I++ GDS VGKT     F   +F D  + T+GVDF  + 
Sbjct: 2   GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61

Query: 212 LSHKKYGGRPVKLQIWD 228
           +      G  +K+Q+WD
Sbjct: 62  V---DIDGERIKIQLWD 75

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 20/61 (32%), Positives = 27/61 (44%)

Query: 90  SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
                  G          + KI+VIGDS VGKT     F   +F D  + T+GVDF  + 
Sbjct: 2   GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61

Query: 150 L 150
           +
Sbjct: 62  V 62

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  141 bits (358), Expect = 2e-40
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             I I G  +VGK+S    FV+ +F+D+Y  T+   F+  +       G+   LQ+ D A
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI----TVNGQEYHLQLVDTA 62

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQD Y    + Y  + +G I+++ +T+ KSFE +      L           +P +L+ +
Sbjct: 63  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGN 119

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           K DL   R +   E +A+   +N  +++E S+KE+    D    ++      ++M+    
Sbjct: 120 KKDLHMERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEA---EKMDGACS 175

Query: 420 ERKSS 424
           + KSS
Sbjct: 176 QGKSS 180

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
           Q+ S  I I G  +VGK+S    FV+ +F+D+Y  T+   F+  +       G+   LQ+
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI----TVNGQEYHLQL 58

Query: 227 WD 228
            D
Sbjct: 59  VD 60

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
           KI ++G  +VGK+S    FV+ +F+D+Y  T+   F+
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT 44

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  141 bits (358), Expect = 3e-40
 Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +       R V+LQ+WD AGQ
Sbjct: 17  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWDTAGQ 73

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   Y ++S   ++++D+TN  SF    +W  D+ ++     G+ +  +L+ +K 
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLVGNKT 129

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DL D RQV   E E    + N + +IE S+K    ++     +   +
Sbjct: 130 DLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 175

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K +       R V+LQ+WD
Sbjct: 17  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQLWD 69

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 101 RPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
              +     K++ +G+ +VGKTS +  F+ + F + Y+ T+G+DF +K
Sbjct: 7   DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK 54

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  142 bits (360), Expect = 4e-40
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 13/199 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV-DFSTKLLSHKKYGGRPVKLQIWDIAG 301
           I + GD  VGKT+Y+   +  +F  NY  TVG  +     L      G  +K  +WD AG
Sbjct: 14  ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL---DDQGNVIKFNVWDTAG 70

Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK 361
           Q++   +  VYY  + G I+ FD+T+R + +++ +W  +  +      G   P ++ A+K
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVCANK 126

Query: 362 CDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
            D+ + +++    +  V    N   + E+S+K           L        R +   V 
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFT--GRPDLIFVS 183

Query: 421 RKSSIRLSEETLRDDQPKK 439
              ++  +E       P++
Sbjct: 184 -NVNLEPTEVNYDYHSPEE 201

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 167 QTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV-DFSTKLLSHKKYGGRPVK 223
           +       I + GD  VGKT+Y+   +  +F  NY  TVG  +     L      G  +K
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL---DDQGNVIK 62

Query: 224 LQIWD 228
             +WD
Sbjct: 63  FNVWD 67

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV-DFSTKLL 150
            KI +IGD  VGKT+Y+   +  +F  NY  TVG  +     L
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL 54

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  141 bits (357), Expect = 4e-40
 Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 17/185 (9%)

Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
            L   Q P   + I G+ + GK++ V  ++   ++       G  F  ++       G+ 
Sbjct: 13  NLYF-QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEI----VVDGQS 66

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
             L I D  G          +    D  + +F L +  SF++V  +   L S        
Sbjct: 67  YLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-- 119

Query: 352 MLPCLLLASKCDLP---DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            +P +L+ ++  +     R ++ +    +       ++ E  +   L +E     +  ++
Sbjct: 120 -VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

Query: 409 ICSKR 413
           +  ++
Sbjct: 179 VALRK 183

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
           Q P   + I G+ + GK++ V  ++   ++       G  F  ++       G+   L I
Sbjct: 17  QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEI----VVDGQSYLLLI 71

Query: 227 WD 228
            D
Sbjct: 72  RD 73

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 99  EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
                     LK+ ++G+ + GK++ V  ++   ++       G  F 
Sbjct: 11  RENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFK 57

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  141 bits (357), Expect = 5e-40
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 9/158 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + GD+ VGK+S V  FVQ+ F  N   T+G  F TK +     G    K  IWD AGQ
Sbjct: 26  VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP---CGNELHKFLIWDTAGQ 82

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++ +YY+ S   +I++D+T + SF ++ +W  +L          ++   +  +KC
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVM--AIAGNKC 138

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           DL D R+V + + +           +E S+K  + IE+
Sbjct: 139 DLSDIREVPLKDAKEYAESIG-AIVVETSAKNAINIEE 175

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 75.3 bits (186), Expect = 5e-16
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 146 STKLLSHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 205
           S+    H   G  P G+          + + GD+ VGK+S V  FVQ+ F  N   T+G 
Sbjct: 3   SSHHHHHHSSGLVPRGSA----IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA 58

Query: 206 DFSTKLLSHKKYGGRPVKLQIWD 228
            F TK +     G    K  IWD
Sbjct: 59  SFMTKTVP---CGNELHKFLIWD 78

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 88  SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           S        G  PR S A   LK+ ++GD+ VGK+S V  FVQ+ F  N   T+G  F T
Sbjct: 4   SHHHHHHSSGLVPRGS-AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT 62

Query: 148 KLLS 151
           K + 
Sbjct: 63  KTVP 66

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  139 bits (354), Expect = 8e-40
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
            +    + + GD+ VGK+S +  FV++ F  N   T+G  F TK +   +Y     K  I
Sbjct: 3   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLI 59

Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AG +R+  ++ +YY+ S   II++D+T  ++F ++  W  +L          ++   
Sbjct: 60  WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVV--A 115

Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           +  +KCDL D R+V   + +      +   ++E S+K  + I +    +  RI 
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIP 168

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 74.1 bits (183), Expect = 7e-16
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           + + GD+ VGK+S +  FV++ F  N   T+G  F TK +   +Y     K  IWD
Sbjct: 9   VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV---QYQNELHKFLIWD 61

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           LK+ ++GD+ VGK+S +  FV++ F  N   T+G  F TK
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK 46

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  139 bits (353), Expect = 1e-39
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G+S VGK++    F   +    ++     D   + +         V L ++DI 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM---VDKEEVTLIVYDIW 59

Query: 301 GQDRY-ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
            Q      +     Q  D  +I+F +T+R+SF  V +    L +     +   LP +L+ 
Sbjct: 60  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVILVG 116

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           +K DL   R+V + E   +    +    IE S+  H    +     V R I  +R
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAV-RQIRLRR 169

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           + +++ G+S VGK++    F   +    ++     D   + +         V L ++D
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM---VDKEEVTLIVYD 57

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           V K++++G+S VGK++    F   +    ++     D   +
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYER 42

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  139 bits (353), Expect = 1e-39
 Identities = 46/158 (29%), Positives = 88/158 (55%), Gaps = 9/158 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GK+S V  FV+++F++  ++T+G  F ++ L+        VK +IWD AGQ
Sbjct: 15  LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VNDATVKFEIWDTAGQ 71

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++ +YY+ +   II+FD+TN+ SFE   +W  +L ++        +   L  +K 
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALAGNKS 127

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           DL D R+V   + +    +   + ++E S+K    +++
Sbjct: 128 DLLDARKVTAEDAQTYAQENG-LFFMETSAKTATNVKE 164

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 161 GTFSPIQTPSYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 218
           G+ +     S    +++ GD   GK+S V  FV+++F++  ++T+G  F ++ L+     
Sbjct: 1   GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA---VN 57

Query: 219 GRPVKLQIWD 228
              VK +IWD
Sbjct: 58  DATVKFEIWD 67

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 14/52 (26%), Positives = 31/52 (59%)

Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
               +     K++++GD   GK+S V  FV+++F++  ++T+G  F ++ L+
Sbjct: 4   AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA 55

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  140 bits (354), Expect = 1e-39
 Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 10/180 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G+S VGK++    F   +    ++     D   + +         V L ++DI 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI---MVDKEEVTLVVYDIW 80

Query: 301 GQDRYICMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
            Q       R    Q  D  +I+F +T+R+SF  V +    L +     +   LP +L+ 
Sbjct: 81  EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD---LPVILVG 137

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
           +K DL   R+V + E   +    +    IE S+  H    +     V R I  +R    A
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAV-RQIRLRRGRNHA 195

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 152 HKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 211
           H    GR    F   +   + +++ G+S VGK++    F   +    ++     D   + 
Sbjct: 5   HHHSSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERR 64

Query: 212 LSHKKYGGRPVKLQIWD 228
           +         V L ++D
Sbjct: 65  I---MVDKEEVTLVVYD 78

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 8/46 (17%), Positives = 21/46 (45%)

Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
              + + K++++G+S VGK++    F   +    ++     D   +
Sbjct: 18  GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYER 63

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  138 bits (350), Expect = 3e-39
 Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 9/158 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +IWD AGQ
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV---CLDDTTVKFEIWDTAGQ 65

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +RY  ++ +YY+ +   I+++D+TN +SF     W  +L  +       ++   L  +K 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA--SPNIVI--ALSGNKA 121

Query: 363 DLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
           DL + R V+  E ++     + + ++E S+K  + + +
Sbjct: 122 DLANKRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNE 158

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 74.5 bits (184), Expect = 5e-16
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+ +         VK +IWD
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV---CLDDTTVKFEIWD 61

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 15/42 (35%), Positives = 29/42 (69%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
           K++++G+S VGK+S V  FV+ +F +  ++T+G  F T+ + 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC 49

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  138 bits (350), Expect = 3e-39
 Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y + + G   VGK+S V  FV+  F ++Y  TV   +   +            LQI D  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI----SCDKSICTLQITDTT 59

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLPCLLLA 359
           G  ++  M R+        I+++ +T+R+S E +        + K  +++   +P +L+ 
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES---IPIMLVG 116

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +KCD    R+V+ +E EA+   +   +++E S+K +  +++    L++  
Sbjct: 117 NKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLE 165

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y + + G   VGK+S V  FV+  F ++Y  TV   +   +            LQI D
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI----SCDKSICTLQITD 57

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           ++ V G   VGK+S V  FV+  F ++Y  TV   +   +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI 44

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  137 bits (348), Expect = 8e-39
 Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 10/187 (5%)

Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
           ++ P    T+ +++ G   VGK++    F+Q+ F+ +Y  T+  D  TK+       G P
Sbjct: 1   SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKIC---SVDGIP 56

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
            +L I D AGQ+ +  M   Y +   G +++F + +R+SF  V +    +      D+  
Sbjct: 57  ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-- 114

Query: 352 MLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
             P +L+ +K DL   RQV  +E  A    ++ +++ E S+K  L ++++   LV R + 
Sbjct: 115 -FPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLV-RAVR 171

Query: 411 SKRMEEE 417
             + +E 
Sbjct: 172 KYQEQEL 178

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 162 TFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 221
           +  P  + ++ +++ G   VGK++    F+Q+ F+ +Y  T+  D  TK+       G P
Sbjct: 1   SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKIC---SVDGIP 56

Query: 222 VKLQIWD 228
            +L I D
Sbjct: 57  ARLDILD 63

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           K++V+G   VGK++    F+Q+ F+ +Y  T+  D  TK
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTK 48

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  138 bits (349), Expect = 1e-38
 Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 11/186 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             ++I G   VGKTS    FV+ +F + Y  TV   +S  +      G     L + D A
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIV----TLGKDEFHLHLVDTA 80

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQD Y  +   +     G ++++ +T+  SF+ +      L           +P +L+ +
Sbjct: 81  GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR---VPVVLVGN 137

Query: 361 KCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAV 419
           K DL P+R+V+  E + +   +   +++E S++E+ + +     ++  I   +       
Sbjct: 138 KADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIA--RVENSYGQ 194

Query: 420 ERKSSI 425
           ER+  +
Sbjct: 195 ERRCHL 200

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 157 GRPYGTFSPIQTP-SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
           GR    F  +       ++I G   VGKTS    FV+ +F + Y  TV   +S  +    
Sbjct: 10  GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIV---- 65

Query: 216 KYGGRPVKLQIWD 228
             G     L + D
Sbjct: 66  TLGKDEFHLHLVD 78

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
           K++++G   VGKTS    FV+ +F + Y  TV   +S
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS 62

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  136 bits (346), Expect = 1e-38
 Identities = 38/169 (22%), Positives = 84/169 (49%), Gaps = 8/169 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +   +   L+I D A
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDCQQCMLEILDTA 59

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  M  +Y +N  G  +++ +T + +F  +   +  +      ++   +P +L+ +
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED---VPMILVGN 116

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCDL D R V   + + +  Q+   +++E S+K  + + +    LV +I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 56.7 bits (138), Expect = 8e-10
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +   +   L+I D
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EVDCQQCMLEILD 57

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
           K++V+G   VGK++    FVQ  F++ Y  T+   + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  136 bits (345), Expect = 1e-38
 Identities = 42/172 (24%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +  K+       G  V++ I 
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDIL 57

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +      +N   +P LL
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLL 114

Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + +K DL D RQV + E +    Q+N ++++E S+K    ++     L+  I
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           + +++ G   VGK++    F+ ++F+++Y+ T    +  K+       G  V++ I D
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILD 58

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 10/40 (25%), Positives = 25/40 (62%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           K++++G   VGK++    F+ ++F+++Y+ T    +  K+
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 45

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  136 bits (346), Expect = 2e-38
 Identities = 45/177 (25%), Positives = 95/177 (53%), Gaps = 10/177 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G   VGK++    F+ ++F+++Y+ T    +  K+       G  V++ I D A
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILDTA 74

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +      +N   +P LL+ +
Sbjct: 75  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLVGN 131

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           K DL D RQV + E +    Q+N ++++E S+K    ++     L+ R I +++ME+
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLM-REIRARKMED 186

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
           G    G  S      + +++ G   VGK++    F+ ++F+++Y+ T    +  K+    
Sbjct: 4   GISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV---- 59

Query: 216 KYGGRPVKLQIWD 228
              G  V++ I D
Sbjct: 60  VLDGEEVQIDILD 72

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 90  SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           SP  S  G   + S A    K++++G   VGK++    F+ ++F+++Y+ T    +  K+
Sbjct: 2   SPGISGGGGGSQNSLAL--HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 59

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  136 bits (346), Expect = 3e-38
 Identities = 45/189 (23%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
             + +++ G   VGK++    F+ ++F+++Y+ T    +  K+       G  V++ I D
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILD 68

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
            AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +      +N   +P LL+
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLLV 125

Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
            +K DL D RQV + E +    Q+N ++++E S+K    ++     L+  I    R  E+
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIR--ARKMED 182

Query: 418 AVERKSSIR 426
           + E+    +
Sbjct: 183 SKEKNGKKK 191

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           + +++ G   VGK++    F+ ++F+++Y+ T    +  K+       G  V++ I D
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV----VLDGEEVQIDILD 68

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 11/51 (21%), Positives = 31/51 (60%)

Query: 99  EPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           +P+  ++  + K++++G   VGK++    F+ ++F+++Y+ T    +  K+
Sbjct: 5   KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 55

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  135 bits (341), Expect = 1e-37
 Identities = 48/237 (20%), Positives = 92/237 (38%), Gaps = 43/237 (18%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
            ++ G+S+VGK+S V    ++ F +N   T+G  F T +++        +K    +    
Sbjct: 10  TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVN---LNDINIKNNSNNEKNN 66

Query: 233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPV 292
                     ++IT        +                                    +
Sbjct: 67  NINSINDDNNVIITNQHNNYNEN---------------------------------LCNI 93

Query: 293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM 352
           K  IWD AGQ+RY  +  +YY+ +   I++FD++N  + +    W + L         + 
Sbjct: 94  KFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSN 147

Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
              +L+A+K D    QV+I E++      N + +I+ S+K    I++    L + I 
Sbjct: 148 YIIILVANKIDKNKFQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIY 203

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 28/121 (23%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
             K +++G+S+VGK+S V    ++ F +N   T+G  F T ++               + 
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVV--------------NLN 52

Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
                                   +     N  N       T   ++       +K  IW
Sbjct: 53  --------------DINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIW 98

Query: 228 D 228
           D
Sbjct: 99  D 99

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  134 bits (340), Expect = 1e-37
 Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
            +    +PTY +++ GD  VGK++    F Q  F+D+Y  T+  D   K     +   + 
Sbjct: 10  AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHT---EIDNQW 65

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGA 351
             L + D AGQ+ +  M   Y +  DG +I++ +T++ SFE V ++   +      ++  
Sbjct: 66  AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES-- 123

Query: 352 MLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRI 408
             P +L+A+K DL   R+V  ++ + +  +YN + +IE S+K+  L ++ + + LV  I
Sbjct: 124 -FPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 180

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 156 GGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 215
           G            P+Y +++ GD  VGK++    F Q  F+D+Y  T+  D   K     
Sbjct: 4   GSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHT--- 59

Query: 216 KYGGRPVKLQIWD 228
           +   +   L + D
Sbjct: 60  EIDNQWAILDVLD 72

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           PS+     K++V+GD  VGK++    F Q  F+D+Y  T+  D   K
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLK 57

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  133 bits (337), Expect = 2e-37
 Identities = 42/169 (24%), Positives = 86/169 (50%), Gaps = 9/169 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FV   F++ Y  T+  DF  K +   +    P  L+I D A
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEI---EVDSSPSVLEILDTA 59

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  M  +Y +N  G I+++ L N++SF+ +   +  +      +    +P +L+ +
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGN 116

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   R+V  +E  A+  ++    ++E S+K   M+++    +V ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ G   VGK++    FV   F++ Y  T+  DF  K +   +    P  L+I D
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEI---EVDSSPSVLEILD 57

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           K++V+G   VGK++    FV   F++ Y  T+  DF  K
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRK 42

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  129 bits (325), Expect = 8e-36
 Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 12/175 (6%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           + +  +++ G++ VGK+S V  FV N F +N + T+G  F T+ ++        VK +IW
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT---INEHTVKFEIW 57

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+R+  ++  YY+N+   ++++D+T  +SF     W  +L  +        +   L
Sbjct: 58  DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIAL 113

Query: 358 LASKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + +K D       R+V   E E +  +   + + E S+K    + D    + ++I
Sbjct: 114 VGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ G++ VGK+S V  FV N F +N + T+G  F T+ ++        VK +IWD
Sbjct: 6   LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT---INEHTVKFEIWD 58

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 16/42 (38%), Positives = 29/42 (69%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS 151
           K++++G++ VGK+S V  FV N F +N + T+G  F T+ ++
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT 46

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  128 bits (325), Expect = 1e-35
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 13/181 (7%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ GD  VGKTS    F   +  D +   +G D   + L      G    L + D  
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTL---TVDGEDTTLVVVDTW 60

Query: 301 GQDR--YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
             ++           Q     +I++ + +R SFES  + +  L      D+   +P +L+
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH---VPIILV 117

Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
            +K DL   R+V + E  A    ++   +IE S+     + +    +V ++    R  + 
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQLR--LRRRDS 174

Query: 418 A 418
           A
Sbjct: 175 A 175

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ GD  VGKTS    F   +  D +   +G D   + L      G    L + D
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTL---TVDGEDTTLVVVD 58

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           +++++GD  VGKTS    F   +  D +   +G D   +
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYER 43

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  128 bits (325), Expect = 2e-35
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +     + I G + VGK++ V  F+  +F+  Y  T+   +  +           V ++I
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA----TIDDEVVSMEI 80

Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
            D AGQ+  I     + +  +G ++++D+T+R SFE V+  K+ LD      N   +  +
Sbjct: 81  LDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN---VTLI 136

Query: 357 LLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRIICSKRM 414
           L+ +K DL   RQV   E E +  +    ++ E S+      I +    L  R +  +RM
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELC-REVRRRRM 194

Query: 415 EE 416
            +
Sbjct: 195 VQ 196

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
           ++    + I G + VGK++ V  F+  +F+  Y  T+   +  +           V ++I
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA----TIDDEVVSMEI 80

Query: 227 WD 228
            D
Sbjct: 81  LD 82

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 85  KSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD 144
            S+        + F+     AE  +K+ + G + VGK++ V  F+  +F+  Y  T+   
Sbjct: 7   HSSGVDLGTENLYFQSMAKSAE--VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 64

Query: 145 FS 146
           + 
Sbjct: 65  YR 66

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  128 bits (324), Expect = 2e-35
 Identities = 29/185 (15%), Positives = 78/185 (42%), Gaps = 15/185 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           ++I G++  GKT+ +Q  ++ K  D      TVG+D     +  +    R + L +WD A
Sbjct: 5   LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKS-FESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           G++ +      +       + ++DL+  ++  +++  W  ++ ++    +    P +L+ 
Sbjct: 65  GREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSS---PVILVG 119

Query: 360 SKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI---ICSK 412
           +  D+ D    +       + + ++  F +  +          D++  L   I     + 
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

Query: 413 RMEEE 417
           ++ ++
Sbjct: 180 KIRDQ 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++I G++  GKT+ +Q  ++ K  D      TVG+D     +  +    R + L +WD
Sbjct: 5   LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLL 150
           +K++++G++  GKT+ +Q  ++ K  D      TVG+D     +
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPI 46

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  126 bits (320), Expect = 6e-35
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 13/183 (7%)

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
            IP   + + GD+  GK+S +  F+   +    + T    +  K +      G+   + I
Sbjct: 4   SIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEML---VDGQTHLVLI 58

Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM-LPC 355
            + AG          +   +D  I +F L +  SF++V +    L S      G + L  
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 356 LLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
           +    +      R V      A+       S+ E  +   L ++     +  + + + R 
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA-QKVVTLRK 172

Query: 415 EEE 417
           +++
Sbjct: 173 QQQ 175

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           P   + + GD+  GK+S +  F+   +    + T    +  K +      G+   + I +
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEML---VDGQTHLVLIRE 60

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
             L++ V+GD+  GK+S +  F+   +    + T    +
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY 43

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  127 bits (321), Expect = 7e-35
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             + I G    GK++    F+  +F+  Y   +   +S++         +PV L++ D A
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE----TVDHQPVHLRVMDTA 77

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
             D      R Y   +   ++++ + +R+SF+S   +   L      +    +P LLL +
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH-AKETQRSIPALLLGN 135

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
           K D+   RQV   E  A+  ++    + EVS+    
Sbjct: 136 KLDMAQYRQVTKAEGVALAGRFG-CLFFEVSACLDF 170

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           + I G    GK++    F+  +F+  Y   +   +S++         +PV L++ D
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE----TVDHQPVHLRVMD 75

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 9/53 (16%), Positives = 22/53 (41%)

Query: 97  GFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           G E         + + ++G    GK++    F+  +F+  Y   +   +S++ 
Sbjct: 10  GRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE 62

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  123 bits (312), Expect = 8e-34
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +L+ G   VGK++  + F             G  +   +       G    L ++DI 
Sbjct: 3   YKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSI----VVDGEEASLMVYDIW 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
            QD    +        D  +I++ +T++ SFE   + +  L      D+   +P +L+ +
Sbjct: 58  EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD---VPIILVGN 114

Query: 361 KCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           K DL   R+V ++E  A    ++   +IE S+  H  ++     +V R I  +R
Sbjct: 115 KSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVV-RQIRLRR 166

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +L+ G   VGK++  + F             G  +   +       G    L ++D
Sbjct: 3   YKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSI----VVDGEEASLMVYD 55

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
           +V K+L++G   VGK++  + F             G  + 
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD 39

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  118 bits (297), Expect = 2e-31
 Identities = 39/188 (20%), Positives = 85/188 (45%), Gaps = 9/188 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           Y +++ G+  VGK++    F       +     +G D   + L         + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
            G++ +  +     Q  D  +I++ +T+R SFE   + +  L      ++   +P +L+ 
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILVG 121

Query: 360 SKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEA 418
           +K DL   R+V ++E  A    ++   +IE S+     +++    +V R +  +R  +E 
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIV-RQVRLRRDSKEK 179

Query: 419 VERKSSIR 426
            ER+ + +
Sbjct: 180 NERRLAYQ 187

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ G+  VGK++    F       +     +G D   + L         + L +W+
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYK-NTVGVDFSTK 148
           ++++IG+  VGK++    F       +     +G D   +
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYER 47

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  122 bits (308), Expect = 2e-30
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 16/215 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVKLQIW 297
           + + GD   GKTS ++  +   F      T G++  TK   + K        +      W
Sbjct: 44  VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D  GQ+      + +   S   +++ D     +  +   W   ++           P ++
Sbjct: 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG--GKS---PVIV 155

Query: 358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           + +K D      +E  +I           +  +S K    +E     L   ++    +  
Sbjct: 156 VMNKIDENPSYNIEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHPDSIYG 214

Query: 417 EAVERKSSIRLSEETLRDDQPKKLVPADKVSTYCW 451
             +   S I++ E+ +     ++ +   +V   C 
Sbjct: 215 TPLAP-SWIKVKEKLVEATTAQRYLNRTEVEKICN 248

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-----GRPVKLQIW 227
           + + GD   GKTS ++  +   F      T G++  TK   + K        +      W
Sbjct: 44  VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103

Query: 228 D-----IYCTLSP 235
           D     I      
Sbjct: 104 DFGGQEIMHASHQ 116

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 159
           +K+ +IGD   GKTS ++  +   F      T G++  TK   + K     
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  112 bits (283), Expect = 3e-29
 Identities = 38/180 (21%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 241 YPILITGDSTVGKTSYVQGF--VQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           Y +++ G+  VGK++    F  V +    +    +G D   + L         + L +W+
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWE 96

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
             G++ +  +     Q  D  +I++ +T+R SFE   + +  L      ++   +P +L+
Sbjct: 97  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED---IPIILV 151

Query: 359 ASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
            +K DL   R+V ++E  A    ++   +IE S+     +++    +V R +  +R  +E
Sbjct: 152 GNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIV-RQVRLRRDSKE 209

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 171 YLILITGDSTVGKTSYVQGF--VQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           Y +++ G+  VGK++    F  V +    +    +G D   + L         + L +W+
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWE 96

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 72  HKHINALPARELCKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGF--V 129
           H H +     +L   N      S            T  ++++IG+  VGK++    F  V
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMSTDS-VISSESGNTYYRVVLIGEQGVGKSTLANIFAGV 60

Query: 130 QNKFLDNYKNTVGVDFSTK 148
            +    +    +G D   +
Sbjct: 61  HDSMDSDC-EVLGEDTYER 78

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  107 bits (269), Expect = 2e-27
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 13/154 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GD  VGKT  +  F + +    Y  TV  +FS  +    KY      L +WD AGQ
Sbjct: 26  IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWDTAGQ 81

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y +SD  ++ F + NR SF+++  +W+ ++      D       +L+  K
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DT---AKTVLVGLK 136

Query: 362 CDL---PDRQVEINEIEAVCHQYNFMSWIEVSSK 392
            DL       V   E + +C +   +++IE SS 
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 86  SNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           SN+    + +     +  + +  LKI+V+GD  VGKT  +  F + +    Y  TV  +F
Sbjct: 1   SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60

Query: 146 STKLLSHKKYGGRPY 160
           S  +    KY    +
Sbjct: 61  SHVM----KYKNEEF 71

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           I++ GD  VGKT  +  F + +    Y  TV  +FS  +    KY      L +WD
Sbjct: 26  IVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM----KYKNEEFILHLWD 77

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  103 bits (258), Expect = 5e-26
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 21/162 (12%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            +  GD  VGKT  +  +  N F  +Y  TV  +FS     +    G  V L +WD AGQ
Sbjct: 11  CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA----NVVVNGATVNLGLWDTAGQ 66

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y+ +D  I+ F L ++ S+E+V  +W  +L           +P +L+ +K
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTK 121

Query: 362 CDLPDRQ-----------VEINEIEAVCHQYNFMSWIEVSSK 392
            DL D +           +   + E +       ++IE SSK
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
            +  GD  VGKT  +  +  N F  +Y  TV  +FS     +    G  V L +WD    
Sbjct: 11  CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA----NVVVNGATVNLGLWDTAGQ 66

Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNK 264
             Y  L P+      + I   S + K SY    V  K
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYE--NVSKK 101

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           +K + +GD  VGKT  +  +  N F  +Y  TV  +FS     +    G   
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA----NVVVNGATV 56

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  101 bits (253), Expect = 5e-25
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            +  GD  VGKT  +  +  NKF  +Y  TV  +FS  +       G+ V L +WD AGQ
Sbjct: 12  CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWDTAGQ 67

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y+ +D  ++ F L ++ S+E+V+ +W  +L       N   +P +L+ +K
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PN---VPIVLVGTK 122

Query: 362 CDLPD---------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
            DL D           +   + E +  Q    ++IE SSK    ++   +  +  ++   
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

Query: 413 RMEEEAVERKSS 424
           R +E    RK+ 
Sbjct: 183 RRKEVPRRRKNH 194

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
            +  GD  VGKT  +  +  NKF  +Y  TV  +FS  +       G+ V L +WD
Sbjct: 12  CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIVNLGLWD 63

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           +K + +GD  VGKT  +  +  NKF  +Y  TV  +FS  +       G+  
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV----AVDGQIV 57

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  100 bits (251), Expect = 7e-25
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            ++ GD  VGKT  +  +  N F   Y  TV  ++S     +    G+PV L +WD AGQ
Sbjct: 33  CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 88

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTK 143

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
            DL D               +   +  A+  +   + ++E S+ 
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 12/113 (10%)

Query: 152 HKKYGGRPYGTFS---PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 208
           H   G  P G+       Q  +   ++ GD  VGKT  +  +  N F   Y  TV  ++S
Sbjct: 9   HHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68

Query: 209 TKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPILITGDSTVGKTSY 256
                +    G+PV L +WD      Y  L P+  P   + +   S V   S+
Sbjct: 69  A----NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 97  GFEPRPSDAETV------LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL 150
           G  PR S  E +      +K +V+GD  VGKT  +  +  N F   Y  TV  ++S    
Sbjct: 13  GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--- 69

Query: 151 SHKKYGGRPY 160
            +    G+P 
Sbjct: 70  -NVMVDGKPV 78

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  100 bits (251), Expect = 7e-25
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD AGQ
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWDTAGQ 83

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y ++D  ++ F + +  S E++  +W  ++   C       +P +L+A+K
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANK 138

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
            DL                 V  ++  A+  +     ++E S+K
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GD   GKT  +  F +++F + Y  TV  ++   +    +  G+ V+L +WD
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQVELALWD 79

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
            K++V+GD   GKT  +  F +++F + Y  TV  ++   +    +  G+  
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI----EVDGKQV 73

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 99.8 bits (249), Expect = 1e-24
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 23/165 (13%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + ++L +WD +G 
Sbjct: 10  IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRIELSLWDTSGS 65

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  +I FD++  ++ +SV+ +WK ++   C          LL+  K
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCK 120

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKE 393
            DL                 V  ++   +  Q    ++IE S+ +
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
           I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + ++L +WD    
Sbjct: 10  IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRIELSLWDTSGS 65

Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFL 266
             Y  + P+  P    ++         +     V  K+ 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDS--VLKKWK 102

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
            KI+V+GDS  GKT+ +  F ++ F +NY  TV  +++       +   +  
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRI 55

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 99.8 bits (249), Expect = 2e-24
 Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 23/176 (13%)

Query: 232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP 291
            + P Q     I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + 
Sbjct: 20  HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQR 75

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNG 350
           ++L +WD +G   Y  +  + Y +SD  +I FD++  ++ +SV+ +WK ++   C     
Sbjct: 76  IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC----- 130

Query: 351 AMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKE 393
                LL+  K DL                 V  ++   +  Q    ++IE S+ +
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 146 STKLLSHKKYGGRPYGT-FSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
           S+    H   G  P G+   P Q     I++ GDS  GKT+ +  F ++ F +NY  TV 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 62

Query: 205 VDFSTKLLSHKKYGGRPVKLQIWD 228
            +++       +   + ++L +WD
Sbjct: 63  ENYTA----SFEIDTQRIELSLWD 82

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 97  GFEPRPSDAETV----LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH 152
           G  PR S  +       KI+V+GDS  GKT+ +  F ++ F +NY  TV  +++      
Sbjct: 13  GLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----S 68

Query: 153 KKYGGRPY 160
            +   +  
Sbjct: 69  FEIDTQRI 76

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 99.1 bits (247), Expect = 2e-24
 Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 23/173 (13%)

Query: 234 SPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVK 293
           S +      ++I GD   GKT  +  F +++F + Y  TV  ++        +  G+ V+
Sbjct: 19  SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA----DIEVDGKQVE 74

Query: 294 LQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAM 352
           L +WD AGQ+ Y  +  + Y ++D  ++ F + +  S E++  +W  ++   C       
Sbjct: 75  LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PN 129

Query: 353 LPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
           +P +L+ +K DL                 V   E   + ++ +   ++E S+K
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 151 SHKKYGGRPYGTFSPIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 210
            H   G  P G  S +      ++I GD   GKT  +  F +++F + Y  TV  ++   
Sbjct: 8   HHHSSGLVPRG--SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA- 64

Query: 211 LLSHKKYGGRPVKLQIWD 228
                +  G+ V+L +WD
Sbjct: 65  ---DIEVDGKQVELALWD 79

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 97  GFEPRPSD-AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           G  PR S  A    K++++GD   GKT  +  F +++F + Y  TV  ++        + 
Sbjct: 13  GLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA----DIEV 68

Query: 156 GGRPY 160
            G+  
Sbjct: 69  DGKQV 73

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 98.3 bits (245), Expect = 4e-24
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 23/171 (13%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            ++ GD  VGKTS V  +  N +   Y  T   +FS          GRPV+LQ+ D AGQ
Sbjct: 23  CVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA----VVSVDGRPVRLQLCDTAGQ 78

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           D +  +  + Y N+D  ++ F + +  SF++V  +W  ++   C        P +L+ ++
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PK---APIILVGTQ 133

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED 399
            DL +             + V     + +  +    S+IE S+     +++
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
           +      ++ GD  VGKTS V  +  N +   Y  T   +FS          GRPV+LQ+
Sbjct: 17  EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA----VVSVDGRPVRLQL 72

Query: 227 WD 228
            D
Sbjct: 73  CD 74

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 88  SPSPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           S  P     G           +K +++GD  VGKTS V  +  N +   Y  T   +FS 
Sbjct: 1   SMGPGEP-GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA 59

Query: 148 KLLSHKKYGGRPY 160
                    GRP 
Sbjct: 60  ----VVSVDGRPV 68

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 98.4 bits (245), Expect = 5e-24
 Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 23/164 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKT+ +Q   ++ + + Y  TV  +++       +   + V+L +WD +G 
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA----CLETEEQRVELSLWDTSGS 85

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
             Y  +  + Y +SD  ++ FD++  ++ +S + +W+ ++   C          LL+  K
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-----PSTRVLLIGCK 140

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
            DL                 +   +  A+  Q     ++E S+ 
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
           +++ GD   GKT+ +Q   ++ + + Y  TV  +++       +   + V+L +WD    
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA----CLETEEQRVELSLWDTSGS 85

Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
             Y  + P+       ++         + 
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETV 114

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 102 PSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           P       K++++GD   GKT+ +Q   ++ + + Y  TV  +++       +   +  
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA----CLETEEQRV 75

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 98.3 bits (245), Expect = 6e-24
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ GD   GKTS +  F    F ++Y  TV   +      + +  G+PV L IWD AGQ
Sbjct: 37  VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV----NLQVKGKPVHLHIWDTAGQ 92

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           D Y  +  ++Y ++   ++ FD+T+  SF+++  +W  +++  C       +P +++  K
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCK 147

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
            DL                 V  +  + +      ++++E S++
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           +++ GD   GKTS +  F    F ++Y  TV   +      + +  G+PV L IWD
Sbjct: 37  VVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV----NLQVKGKPVHLHIWD 88

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           +K++++GD   GKTS +  F    F ++Y  TV   +      + +  G+P 
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV----NLQVKGKPV 82

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 96.4 bits (240), Expect = 1e-23
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            ++ GD  VGKT  +  +  N F   Y  TV  ++S     +    G+PV L +WD AGQ
Sbjct: 8   CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 63

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y  +D  +I F L +  SFE+V  +W  ++   C        P +L+ +K
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTK 118

Query: 362 CDLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSK 392
            DL D               +   +  A+  +   + ++E S+ 
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
            ++ GD  VGKT  +  +  N F   Y  TV  ++S     +    G+PV L +WD    
Sbjct: 8   CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 63

Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
             Y  L P+  P   + +   S V   S+
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASF 92

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           +   +K +V+GD  VGKT  +  +  N F   Y  TV  ++S     +    G+P 
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPV 53

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 23/166 (13%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            ++ GD  VGKT  +  +  + F + Y  TV   ++         GG+   L ++D AGQ
Sbjct: 21  CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV----SVTVGGKQYLLGLYDTAGQ 76

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASK 361
           + Y  +  + Y  +D  +I F + N  SF++V  +W  +L       N   +P LL+ ++
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PN---VPFLLIGTQ 131

Query: 362 CDLPDRQ-------------VEINEIEAVCHQYNFMSWIEVSSKEH 394
            DL D               + + + + +  +     ++E S+   
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 177

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI--- 229
            ++ GD  VGKT  +  +  + F + Y  TV   ++         GG+   L ++D    
Sbjct: 21  CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV----SVTVGGKQYLLGLYDTAGQ 76

Query: 230 --YCTLSPIQIPTYPILITGDSTVGKTSY 256
             Y  L P+  P   + +   S V   S+
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASF 105

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 90  SPRASVIGFEPRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL 149
           SP A        P     +LK +V+GD  VGKT  +  +  + F + Y  TV   ++   
Sbjct: 2   SPGAGRSSMAHGP--GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-- 57

Query: 150 LSHKKYGGRPY 160
                 GG+ Y
Sbjct: 58  --SVTVGGKQY 66

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 80.6 bits (199), Expect = 7e-18
 Identities = 29/188 (15%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN-----------TVGVDFSTKLLSHKKYGGRP 291
           I+  G    GKT+ ++ ++ +K  +  K            T+  DF    L   +  G  
Sbjct: 17  IVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLP--LDIGEVKGFK 73

Query: 292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDS-KCILDNG 350
            +  ++ + GQ  Y    ++  +  DG + + D    +   +    ++  ++        
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC 410
             +P ++  +K DLPD  + +  + AV         +E  + E   + +++  +   ++ 
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL- 191

Query: 411 SKRMEEEA 418
             R+   +
Sbjct: 192 -ARVAGGS 198

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 73.5 bits (180), Expect = 6e-15
 Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 21/236 (8%)

Query: 177 GDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTLSPI 236
           G   +GK+     FV+    D +         T +LS   +GGR V    +  +  +S  
Sbjct: 35  GQCGIGKSCLCNRFVRPSA-DEF-----HLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRS 88

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
                   +     V +T     F+ ++    +++T    +  +  + K      +    
Sbjct: 89  LEDCVECKM---HIVEQTE----FIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFC 141

Query: 297 WDIAGQDRYI--CMSRVYYQNSDGCIIMFDLTN--RKSFESVVQWKHDLDSKCILDNGAM 352
            D  G ++              DG ++  D++    ++F+  +++  +L ++        
Sbjct: 142 TDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKK-- 199

Query: 353 LPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
            P +++ +KCD    +  I +          +  +E S++ ++ ++ + + LV  I
Sbjct: 200 -PIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 69.6 bits (170), Expect = 3e-13
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 39/202 (19%)

Query: 213 SHKKYGGRPVKLQIWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKF------- 265
             +    R   + I      +          ++ GD  VGKT  +  +  N F       
Sbjct: 128 HVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT 187

Query: 266 -LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFD 324
             DNY   V VD            G+PV L +WD AG + Y  +  + Y  +D  +I F 
Sbjct: 188 VFDNYSANVMVD------------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFS 235

Query: 325 LTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVE 370
           L +  SF  V   W  ++   C        P +L+ +K DL D               + 
Sbjct: 236 LVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 290

Query: 371 INEIEAVCHQYNFMSWIEVSSK 392
             +  A+  +   + ++E S+ 
Sbjct: 291 YPQGLAMAKEIGAVKYLECSAL 312

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 35/216 (16%), Positives = 80/216 (37%), Gaps = 22/216 (10%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +L+ G S  GK+S ++  + + +       +G  +D     L         + L +WD  
Sbjct: 6   LLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----MTLNLWDCG 60

Query: 301 GQDRY-----ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           GQD +            +Q     I +FD+ + +  + +  +   L         A +  
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI-- 118

Query: 356 LLLASKCDL--PDRQVEI-----NEIEAVCHQYNFMSW-IEVSSKEHLMIEDSMNFLVDR 407
            +L  K DL   D++ E+       +     ++ F +     +S     +  + + +V  
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCS 178

Query: 408 IICSKRMEEEAVERKSSIRLSEETLRDDQPKKLVPA 443
           +I +    +  +++   I  + E +  ++   LV  
Sbjct: 179 LIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVIC 214

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 59.9 bits (146), Expect = 8e-11
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG 301
           + + G   + GKT++V      +F ++   TVG  F+ + ++        V +++WDI G
Sbjct: 25  LTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN-----VTIKLWDIGG 76

Query: 302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCLLLA 359
           Q R+  M   Y +     + M D  +++  E+    K++L +  +LD   +  +P L+L 
Sbjct: 77  QPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS---KNELHN--LLDKPQLQGIPVLVLG 131

Query: 360 SKCDLPD 366
           +K DLP 
Sbjct: 132 NKRDLPG 138

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTV--GVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           IL+ G    GKT+ +      K       T    + F+ + + +K      +   +WD+ 
Sbjct: 32  ILMVGLDAAGKTTIL-----YKLKLGEIVTTIPTIGFNVETVEYKN-----ICFTVWDVG 81

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQD+   + R Y+QN+ G I + D  +R+  +        +  +  L +      L+ A+
Sbjct: 82  GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD---AVLLVFAN 138

Query: 361 KCDLPD 366
           K D+P+
Sbjct: 139 KQDMPN 144

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 23/132 (17%)

Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN------TVGVDFSTKLLSHKKYGGRPVKLQ 295
           +L  G D++ GKT+ +     NK   +         T+G  FS +           +   
Sbjct: 24  VLCLGLDNS-GKTTII-----NKLKPSNAQSQNILPTIG--FSIEKFKSSS-----LSFT 70

Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-LDSKCILDNGAMLP 354
           ++D++GQ RY  +   YY+     I + D ++R       +     L+   I       P
Sbjct: 71  VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI--P 128

Query: 355 CLLLASKCDLPD 366
            L  A+K DL D
Sbjct: 129 ILFFANKMDLRD 140

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIA 300
           ILI G    GKT+ +      +       T    + F+ + LS+K      +KL +WD+ 
Sbjct: 21  ILILGLDGAGKTTIL-----YRLQIGEVVTTKPTIGFNVETLSYKN-----LKLNVWDLG 70

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCLLL 358
           GQ       R YY ++   I + D T++    +      +L    +L    +     L+ 
Sbjct: 71  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA---SKELHL--MLQEEELQDAALLVF 125

Query: 359 ASKCDLPD 366
           A+K D P 
Sbjct: 126 ANKQDQPG 133

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 23/130 (17%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           IL+ G    GKT+ +      K           T+G  F+ + + +K      +   +WD
Sbjct: 3   ILMVGLDAAGKTTIL-----YKLKLGEIVTTIPTIG--FNVETVEYKN-----ISFTVWD 50

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCL 356
           + GQD+   + R Y+QN+ G I + D  +R+        + +L    +L    +     L
Sbjct: 51  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA---REELMR--MLAEDELRDAVLL 105

Query: 357 LLASKCDLPD 366
           + A+K DLP+
Sbjct: 106 VFANKQDLPN 115

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           ILI G    GKT+ +      +           T+G  F+ + +++K      +K Q+WD
Sbjct: 10  ILILGLDGAGKTTIL-----YRLQVGEVVTTIPTIG--FNVETVTYKN-----LKFQVWD 57

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
           + G        R YY N+D  I + D  +R         K +L +    +       ++ 
Sbjct: 58  LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS---KSELVAMLEEEELRKAILVVF 114

Query: 359 ASKCDLPD 366
           A+K D+  
Sbjct: 115 ANKQDMEQ 122

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 30/182 (16%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           +L+ G    GKT+ +      KF     +    T+G  F+ K L H+       KL IWD
Sbjct: 21  LLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLG--FNIKTLEHRG-----FKLNIWD 68

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL 358
           + GQ       R Y++++DG I + D  +R+  +     + +L S  + +  A    L+ 
Sbjct: 69  VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIF 125

Query: 359 ASKCDLPD--RQVEINEI----EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSK 412
           A+K DLP       I E         H +        S+     +   +++L+D I  S 
Sbjct: 126 ANKQDLPGALSCNAIQEALELDSIRSHHWRIQG---CSAVTGEDLLPGIDWLLDDI--SS 180

Query: 413 RM 414
           R+
Sbjct: 181 RV 182

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           ++I G    GKT+ +      +F  N       T+G   + + +          +  +WD
Sbjct: 19  VIIVGLDNAGKTTIL-----YQFSMNEVVHTSPTIG--SNVEEIVINN-----TRFLMWD 66

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCL 356
           I GQ+        YY N++  I++ D T+R+        + +L    +L +  +     L
Sbjct: 67  IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYK--MLAHEDLRKAGLL 121

Query: 357 LLASKCDLPD 366
           + A+K D+ +
Sbjct: 122 IFANKQDVKE 131

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIWD 298
           ++I G    GKT+ +      +F  N       T+G   + + +          +  +WD
Sbjct: 24  VIIVGLDNAGKTTIL-----YQFSMNEVVHTSPTIG--SNVEEIVINN-----TRFLMWD 71

Query: 299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPCL 356
           I GQ+        YY N++  I++ D T+R+        + +L    +L +  +     L
Sbjct: 72  IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYK--MLAHEDLRKAGLL 126

Query: 357 LLASKCDLPD 366
           + A+K D+ +
Sbjct: 127 IFANKQDVKE 136

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 34/184 (18%)

Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
           IL+ G D+  GKT+ +      +      +    T G  F+ K +  +       KL +W
Sbjct: 19  ILLLGLDN-AGKTTLL-----KQLASEDISHITPTQG--FNIKSVQSQG-----FKLNVW 65

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPC 355
           DI GQ +     R Y++N+D  I + D  +RK FE       +L    +L+   +  +P 
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTE--LLEEEKLSCVPV 120

Query: 356 LLLASKCDLPD--RQVEINEI----EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           L+ A+K DL       EI E           +   S    S+     ++D MN++   + 
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS---CSALTGEGVQDGMNWVCKNVN 177

Query: 410 CSKR 413
             K+
Sbjct: 178 AKKK 181

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 21/129 (16%)

Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +L+ G D+  GKTS +      +           TVG   + + L +K      +  ++W
Sbjct: 25  VLMLGLDN-AGKTSIL-----YRLHLGDVVTTVPTVG--VNLETLQYKN-----ISFEVW 71

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D+ GQ       R Y+ ++D  I + D T+R         KH+L +    D       L+
Sbjct: 72  DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA---KHELYALLDEDELRKSLLLI 128

Query: 358 LASKCDLPD 366
            A+K DLPD
Sbjct: 129 FANKQDLPD 137

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
           ++  G D+  GKT+ +     +   D+       T+    +++ L+        +    +
Sbjct: 28  LVFLGLDNA-GKTTLL-----HMLKDDRLGQHVPTLH--PTSEELTIAG-----MTFTTF 74

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML--PC 355
           D+ G  +   + + Y    +G + + D  + +        K +LDS  ++ +  +   P 
Sbjct: 75  DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLES---KEELDS--LMTDETIANVPI 129

Query: 356 LLLASKCDLPD 366
           L+L +K D P+
Sbjct: 130 LILGNKIDRPE 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 22/131 (16%), Positives = 57/131 (43%), Gaps = 25/131 (19%)

Query: 243 ILITG-DSTVGKTSYVQGFVQNKFLDNYKN----TVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +L  G D+  GKT+ +     +   ++       T     +++ L+        +K   +
Sbjct: 26  LLFLGLDNA-GKTTLL-----HMLKNDRLATLQPTWH--PTSEELAIGN-----IKFTTF 72

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM--LPC 355
           D+ G  +   + + Y+   +G + + D  + + F+     + +LD+  + +   +  +P 
Sbjct: 73  DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDA--LFNIAELKDVPF 127

Query: 356 LLLASKCDLPD 366
           ++L +K D P+
Sbjct: 128 VILGNKIDAPN 138

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 25/183 (13%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG--VDFSTKLLSHKKYGGRPVKLQIWDIA 300
           IL+ G    GK+S +Q  V +K   N    +          +S+  +    V  QIWD  
Sbjct: 23  ILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTNKIYKDDISNSSF----VNFQIWDFP 77

Query: 301 GQDRYIC---MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           GQ  +        + ++ +   I + D  +    E++ +    +     ++        +
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNF--EV 134

Query: 358 LASKCDL--PDRQVEI---------NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
              K D    D ++E          +++     +   +S+   S  +H  I ++ + +V 
Sbjct: 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVVQ 193

Query: 407 RII 409
           ++I
Sbjct: 194 KLI 196

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 272 TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF 331
           T+G  F+ + + +K      +   +WD+ GQD+   + R Y+QN+ G I + D  +R+  
Sbjct: 196 TIG--FNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV 248

Query: 332 ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD 366
                 + +L      D       L+ A+K DLP+
Sbjct: 249 NEA---REELMRMLAEDELRDAVLLVFANKQDLPN 280

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I+I G    GKTS +     +      + TV                    + + D  G 
Sbjct: 51  IIIAGPQNSGKTSLLTLLTTDSV----RPTV-----VSQEPLSAADYDGSGVTLVDFPGH 101

Query: 303 DRYICMSRVYYQNS----DGCIIMFD-LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
            +       Y +       G I M D   + K   +  ++  D+ S         +  L+
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161

Query: 358 LASKCDLPD 366
             +K +L  
Sbjct: 162 ACNKSELFT 170

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L  G    GKT      +  ++ D    ++    S+ +       G    L + D+ G 
Sbjct: 10  VLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRG--NSLTLIDLPGH 64

Query: 303 DRY-ICMSRVYYQNSDGCIIMFDLTNR-KSFESVVQWKHD-LDSKCILDNGAMLPCLLLA 359
           +     +   +  ++   + + D     +  + V ++ +  L     L N   L  L+  
Sbjct: 65  ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL--LIAC 122

Query: 360 SKCDLPD 366
           +K D+  
Sbjct: 123 NKQDIAM 129

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 14/129 (10%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I+I G    GKTS +     +      + TV          +         + + D  G 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDG-----SGVTLVDFPGH 65

Query: 303 DRYICMSRVYYQNS----DGCIIMFD-LTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
            +       Y +       G I M D   + K   +  ++  D+ S         +  L+
Sbjct: 66  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125

Query: 358 LASKCDLPD 366
             +K +L  
Sbjct: 126 ACNKSELFT 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 73/477 (15%), Positives = 133/477 (27%), Gaps = 159/477 (33%)

Query: 84  CKSNSPSPRASVIGFEPRPSDAETVLKILVIGDSTVG-----------KTSYVQGFVQNK 132
           CK     P+ S++      S  E +  I++  D+  G           +   VQ FV+  
Sbjct: 35  CKDVQDMPK-SIL------SKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 133 FLDNYK------NTVGVDFSTKLLSHKKYGGRPYGT---FSP-----------IQT---- 168
              NYK       T     S     + +   R Y     F+            ++     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 169 --PSYLILITGDSTVGKTSYVQGFVQN-KFLDNYKN-----TVGVDFSTKL-------LS 213
             P+  +LI G    GKT        + K             +    S +        L 
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 214 H---KKYGGRP-----VKLQIWDIYCTLSP-IQIPTYP---------------------- 242
           +     +  R      +KL+I  I   L   ++   Y                       
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 243 -ILI-TGDSTV------GKTSYV------QGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG 288
            IL+ T    V        T+++           ++        +        L  +   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLT 324

Query: 289 GRPVKLQIWDIAGQDR-YICMSRVY-YQNSD--GCIIMFDLTN------RKSFESVVQWK 338
             P +L I  IA   R  +     + + N D    II   L        RK F+ +    
Sbjct: 325 TNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--- 379

Query: 339 HDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
                  +    A +P +LL+                        + W +V   +   + 
Sbjct: 380 -------VFPPSAHIPTILLS------------------------LIWFDVIKSD---VM 405

Query: 399 DSMNFLVDRIICSKRMEEEAVERKSSIRLSEETLRDDQP---KKLVPADKV-STYCW 451
             +N L    +  K+ +E  +    SI L  +   +++    + +V    +  T+  
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	100.0
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.98
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.94
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.94
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.94
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.94
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.94
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.94
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.94
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.94
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.94
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.94
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.94
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.93
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.93
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.93
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.93
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.91
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.91
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.91
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.91
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.91
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.9
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.84
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.9
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.9
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.9
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.9
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.9
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.89
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.89
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.88
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.88
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.88
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.87
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.87
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.86
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.85
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.85
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.85
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.84
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.82
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.81
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.81
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.81
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.8
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.79
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.78
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.77
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.77
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.76
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.75
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.75
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.73
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.73
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.72
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.72
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.72
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.72
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.72
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.71
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.71
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.7
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.7
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.7
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.69
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.69
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.69
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.68
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.68
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.67
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.67
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.67
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.67
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.66
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.66
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.65
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.65
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.65
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.65
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.64
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.64
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.64
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.64
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.64
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.62
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.62
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.61
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.61
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.6
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.6
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.58
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.58
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.57
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.54
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.52
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.52
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.52
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.51
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.51
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.5
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.49
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.49
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.48
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.48
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.46
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.44
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.43
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.43
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.36
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.34
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.34
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.32
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.28
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.27
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.26
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.25
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.18
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.18
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.17
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.16
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.16
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.12
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.02
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.97
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.84
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.83
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.79
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.7
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.69
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.64
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.44
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.34
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.32
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.32
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.31
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.3
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.3
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.29
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.29
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.28
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.28
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.25
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.25
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.25
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.25
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.25
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.24
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.24
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.23
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.23
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.22
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.22
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.21
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.21
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.2
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.2
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.18
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.17
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.17
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.15
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.15
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.14
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.14
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.13
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.12
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.12
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.12
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.12
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.12
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.1
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.09
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.08
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.08
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.08
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.08
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.08
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.08
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.07
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.07
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.06
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.06
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.06
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.05
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.05
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.04
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.04
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.04
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.04
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.04
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.03
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.03
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.03
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.03
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.02
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.02
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.01
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.01
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.01
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.0
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.99
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.96
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.94
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.93
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.93
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.93
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.91
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.88
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.88
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.87
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.87
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.87
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.87
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.84
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.84
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.84
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.82
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.82
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.81
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.79
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.79
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.78
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.78
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.77
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.77
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.73
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.72
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.7
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.67
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	97.67
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.65
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.82
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.64
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.64
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.63
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.62
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.53
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.52
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.52
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.51
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.46
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.41
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.4
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.39
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.38
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.36
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.35
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.34
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.25
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.21
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.21
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.21
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.2
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.2
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.2
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.16
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.16
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.15
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.14
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.12
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.1
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.03
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.01
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	96.78
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.78
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.73
1wb1_A	482	Translation elongation factor SELB; selenocysteine	96.7
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.63
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.59
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.5
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.39
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	96.39
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.38
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.35
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.3
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.26
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.26
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.2
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.15
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.13
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.13
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	96.11
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.09
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.94
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.89
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	95.89
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.73
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	95.73
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.73
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.68
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	95.56
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	95.55
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	95.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.44
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	95.1
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	95.01
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	94.96
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	94.86
2xxa_A	433	Signal recognition particle protein; protein trans	94.72
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.67
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	94.66
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	94.62
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.51
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	94.32
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.91
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.81
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	93.74
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	93.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	93.52
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.45
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	93.41
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.19
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.18
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.15
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.02
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	92.98
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	92.64
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	92.4
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.37
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	92.31
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	92.3
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.09
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.04
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	92.01
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.0
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	91.95
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	91.94
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	91.93
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	91.93
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	91.86
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	91.66
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	91.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.54
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	91.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	91.28
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	91.26
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	91.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.03
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	90.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	90.81
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	90.76
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	90.76
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.73
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	90.68
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	90.57
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	90.44
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	90.42
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	90.26
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	90.13
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	90.05
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	90.03
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	90.02
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.0
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	89.87
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	89.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	89.79
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	89.72
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	89.71
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	89.71
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	89.71
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	89.55
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	89.54
4a74_A	231	DNA repair and recombination protein RADA; hydrola	89.51
3cwq_A	209	Para family chromosome partitioning protein; alpha	89.48
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	89.19
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	88.99
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	88.97
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	88.86
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	88.82
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	88.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	88.65
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	88.54
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	88.51
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	88.49
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	88.47
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	88.47
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	88.46
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	88.38
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	88.37
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	88.35
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	88.35

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.2e-36  Score=282.68  Aligned_cols=167  Identities=29%  Similarity=0.578  Sum_probs=143.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|++|||||||+++|+.+.|...+.+|++.++..+.+..   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~---~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC---SSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe---cceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            4689999999999999999999999999999999999999988888   8899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..||+.+..|+..+...    ...++|+||||||+|+.+ +++..++++++++++++. |+||||++|.||
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~----~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~SAktg~nV  163 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNV  163 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHh----cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEEeCCCCcCH
Confidence            99999999999999999999999877    457799999999999987 889999999999999986 999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14768        398 EDSMNFLVDRIICSKR  413 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~  413 (452)
                      +++|+.|++.+.....
T Consensus       164 ~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          164 KQLFRRVAAALPGMES  179 (216)
T ss_dssp             HHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999998875443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=3.8e-34  Score=295.93  Aligned_cols=292  Identities=13%  Similarity=0.095  Sum_probs=186.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TPS  170 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~  170 (452)
                      ++|+|||+||||||||||||++++++ ....+++++|+....+.+....+.+.|+.+...                 ..+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            58999999999999999999999887 556677777887777777777777777777531                 122


Q ss_pred             eeEEEEcCCCCCchhhhhhhc-------------ccccccccCCCcccccee----eeecccccCCccceeeeeeccccC
Q psy14768        171 YLILITGDSTVGKTSYVQGFV-------------QNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCTL  233 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~~-------------~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~l  233 (452)
                      ..++||.|+..|.+.....+.             -||.|.........+++.    .++.++..++.++...+......+
T Consensus        84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF  163 (436)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence            379999999999886544332             244443211111112211    334444445544443222111111


Q ss_pred             C-----CCCCCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc-----
Q psy14768        234 S-----PIQIPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-----  302 (452)
Q Consensus       234 ~-----~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-----  302 (452)
                      .     ......++|+++|++|||||||+|+++++.+. ....++++.+.....+..   ++.  .+.||||||+     
T Consensus       164 ~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~---~~~--~~~l~DT~G~~~~~~  238 (436)
T 2hjg_A          164 KNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY---NQQ--EFVIVDTAGMRKKGK  238 (436)
T ss_dssp             GGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE---TTE--EEEETTHHHHTCBTT
T ss_pred             CccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE---CCe--EEEEEECCCcCcCcc
Confidence            1     12234689999999999999999999986653 566678888887777766   554  5889999998     


Q ss_pred             -----chhhhhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHH-
Q psy14768        303 -----DRYICMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEI-  374 (452)
Q Consensus       303 -----e~~~~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~-  374 (452)
                           ++|..++. .+++.+|++|+|||++++.++++.. |...+..       .++|++||+||||+.+ +....++. 
T Consensus       239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-------~~~~iiiv~NK~Dl~~~~~~~~~~~~  310 (436)
T 2hjg_A          239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-------AGKAVVIVVNKWDAVDKDESTMKEFE  310 (436)
T ss_dssp             BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-------TTCEEEEEEECGGGSCCCTTHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-------cCCcEEEEEECccCCCcchHHHHHHH
Confidence                 66666654 5889999999999999999999874 5544443       2499999999999986 44333333 


Q ss_pred             HHHHHHc---CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        375 EAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       375 ~~~~~~~---~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      +++.+.+   ...+++++||++|.||+++|+.+.+.+.+...
T Consensus       311 ~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~  352 (436)
T 2hjg_A          311 ENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  352 (436)
T ss_dssp             HHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             HHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence            3333333   34569999999999999999999998876543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.98  E-value=5.4e-33  Score=288.87  Aligned_cols=293  Identities=13%  Similarity=0.089  Sum_probs=191.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------CC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------TP  169 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~  169 (452)
                      ..+|+|||++|||||||+|||++.++. ....++++++.....+.+....+.+.++.+...                 ..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  102 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE  102 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence            468999999999999999999999887 555667777777777777777777777777431                 11


Q ss_pred             ceeEEEEcCCCCCchhhhhhhc-------------ccccccccCCCcccccee----eeecccccCCccceeeeeecccc
Q psy14768        170 SYLILITGDSTVGKTSYVQGFV-------------QNKFLDNYKNTVGVDFST----KLLSHKKYGGRPVKLQIWDIYCT  232 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~-------------~~~~~~~~~~~i~~~~~~----~~~~~~~id~~~~~l~i~d~~~~  232 (452)
                      ...|+||.|+..|.+.....+.             .|+.|.........+++.    ..+.++..++.++...+......
T Consensus       103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~  182 (456)
T 4dcu_A          103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEH  182 (456)
T ss_dssp             CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhh
Confidence            2379999999999887655432             244443211111111111    12233333443333221111111


Q ss_pred             C-----CCCCCCcccEEEeeecccCCcceeeecccc-ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-----
Q psy14768        233 L-----SPIQIPTYPILITGDSTVGKTSYVQGFVQN-KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG-----  301 (452)
Q Consensus       233 l-----~~~~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG-----  301 (452)
                      +     .......++|+++|.+|+|||||+|+|++. .......++++.+.....+..   ++.  .+.||||||     
T Consensus       183 l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~---~~~--~~~l~DT~G~~~~~  257 (456)
T 4dcu_A          183 FKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY---NQQ--EFVIVDTAGMRKKG  257 (456)
T ss_dssp             GGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE---TTE--EEEETTGGGTTTBT
T ss_pred             cccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE---CCc--eEEEEECCCCCcCc
Confidence            1     112345689999999999999999999975 455667788888877777766   554  788999999     


Q ss_pred             -----cchhhhhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHH
Q psy14768        302 -----QDRYICMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEI  374 (452)
Q Consensus       302 -----~e~~~~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~  374 (452)
                           +++|..++. .+++.+|++|+|+|++++.+.++... ...+..       .++|+|||+||||+.+ ++...+++
T Consensus       258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~-~~~~~~-------~~~~~ilv~NK~Dl~~~~~~~~~~~  329 (456)
T 4dcu_A          258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI-AGYAHE-------AGKAVVIVVNKWDAVDKDESTMKEF  329 (456)
T ss_dssp             TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH-HHHHHH-------TTCEEEEEEECGGGSCCCSSHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHH-HHHHHH-------cCCCEEEEEEChhcCCCchHHHHHH
Confidence                 788887765 47899999999999999877666533 333332       2489999999999987 55566666


Q ss_pred             HHHHHHc----CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        375 EAVCHQY----NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       375 ~~~~~~~----~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      .+.++..    +..++++|||++|.||+++|+++.+.+.+...
T Consensus       330 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          330 EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            6665554    34569999999999999999999998877654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.97  E-value=1.4e-31  Score=276.93  Aligned_cols=291  Identities=16%  Similarity=0.123  Sum_probs=179.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC------------------CC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ------------------TP  169 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~  169 (452)
                      .+|+|||+||||||||||||++++++ ....+++++|+....+.+....+.+.|+.+...                  ..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            47999999999999999999999877 677788888888887777665556666666432                  23


Q ss_pred             ceeEEEEcCCCCCchhhhhhh-------------cccccccccC-C-Ccccccee----eeecccccCCccceeeeeec-
Q psy14768        170 SYLILITGDSTVGKTSYVQGF-------------VQNKFLDNYK-N-TVGVDFST----KLLSHKKYGGRPVKLQIWDI-  229 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~-------------~~~~~~~~~~-~-~i~~~~~~----~~~~~~~id~~~~~l~i~d~-  229 (452)
                      +..|+||.|+..|.|.....+             +.||.|.... . ....+|+.    ..+.++..++.++...+... 
T Consensus        82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~  161 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETII  161 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHH
Confidence            347999999999988654322             2255543211 0 01012211    23344555555444322211 


Q ss_pred             --cccCC-C-----CCCCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        230 --YCTLS-P-----IQIPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       230 --~~~l~-~-----~~~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                        +.... .     .....++|+++|++|||||||+|++++... .....++++.+.....+.+   ++.  .+.+|||+
T Consensus       162 ~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~---~g~--~~~l~Dt~  236 (439)
T 1mky_A          162 KKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI---DGR--KYVFVDTA  236 (439)
T ss_dssp             HHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE---TTE--EEEESSCS
T ss_pred             HhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE---CCE--EEEEEECC
Confidence              11101 1     123458999999999999999999998643 4566677777777777766   655  57899999


Q ss_pred             Ccchhhhh-----------h-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C
Q psy14768        301 GQDRYICM-----------S-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R  367 (452)
Q Consensus       301 G~e~~~~~-----------~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~  367 (452)
                      |++++...           + ..+++.+|++++|+|++++.++++... ...+..       .++|+++|+||||+.+ +
T Consensus       237 G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i-~~~l~~-------~~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          237 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRM-AGLMER-------RGRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             CC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHH-HHHHHH-------TTCEEEEEEECGGGSTTG
T ss_pred             CCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-------cCCCEEEEEECccCCCch
Confidence            98544322           1 246788999999999999888877432 222222       3489999999999976 3


Q ss_pred             cccHHHHH-HHHHHc---CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        368 QVEINEIE-AVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       368 ~~~~e~~~-~~~~~~---~~~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ....++.. .+.+.+   +..+++++||++|.||+++|+.+.+.+.+..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          309 EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            33344333 333333   3456999999999999999999998876653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=1.6e-29  Score=233.68  Aligned_cols=169  Identities=33%  Similarity=0.610  Sum_probs=153.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL---DGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE---TTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            4589999999999999999999999888888899999988888877   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++.+++...++. |+++||++|.||
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  158 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNV  158 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence            99999999999999999999998876    456799999999999987 677888999999998876 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q psy14768        398 EDSMNFLVDRIICSKRME  415 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~~  415 (452)
                      +++|+++.+.+.+.....
T Consensus       159 ~~l~~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          159 EDAFLTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999998765433

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.96  E-value=3.2e-29  Score=231.25  Aligned_cols=173  Identities=31%  Similarity=0.591  Sum_probs=150.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++.+|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV---DDRLVTMQIWDTAGQERFQSLGVAFYRGAD   82 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES---SSCEEEEEEEEECSSGGGSCSCCGGGTTCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE---CCEEEEEEEEeCCCcHHHHHhHHHHHhCCc
Confidence            34689999999999999999999998888888899999988888877   788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++|+|||++++.+|+.+..|+..+..........++|++||+||+|+.++.+..+++..++......+|+++||++|.||
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            99999999999999999999988876532112246899999999999876777888888888444445999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14768        398 EDSMNFLVDRIICSKR  413 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~  413 (452)
                      +++|+++++.+.+...
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          163 EQAFQTIARNALKQET  178 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987554

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=226.98  Aligned_cols=167  Identities=25%  Similarity=0.492  Sum_probs=147.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.+   ++..+.+.||||+|++.|..++..+++.+|
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE---CCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            3468999999999999999999999888888888887655 344555   788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ +++..+++.+++..+++. |+++||++|.|
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~g  163 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRAN  163 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEeCCCCCC
Confidence            9999999999999999999999887762   235799999999999987 678888999999998875 99999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      |+++|+++++.+...+
T Consensus       164 i~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          164 VDKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=1.3e-28  Score=222.79  Aligned_cols=167  Identities=31%  Similarity=0.635  Sum_probs=123.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++++|+
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE---TTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            4589999999999999999999998888888899999988888877   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..++++++++.+++. |++|||++|.||
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  158 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINV  158 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence            99999999999999999999988876    346799999999999987 677889999999999875 999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy14768        398 EDSMNFLVDRIICSKR  413 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~  413 (452)
                      +++|+++++.+.....
T Consensus       159 ~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          159 ENAFFTLARDIKAKMD  174 (183)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=5.6e-28  Score=220.74  Aligned_cols=169  Identities=30%  Similarity=0.589  Sum_probs=154.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.+..++..+++.+|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE---CCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            44689999999999999999999999998888999999998888888   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..++.++++..+++. |+++||++|.|
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~g  165 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATN  165 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEECTTTCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEeCCCCCC
Confidence            999999999999999999999999877    456799999999999987 778888999999999987 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy14768        397 IEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~  414 (452)
                      |+++|+++++.+.+....
T Consensus       166 v~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999876554

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=216.43  Aligned_cols=170  Identities=32%  Similarity=0.598  Sum_probs=151.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI---NGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE---TTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE---CCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            34689999999999999999999998888888899999998888887   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+++.+..|+..+...     ..++|++||+||+|+.+ +.+..++...++...++. ++++||++|.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  157 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQN-----CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETSAKENVN  157 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH-----CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECBTTTTBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEECCCCCC
Confidence            999999999999999999999998776     35799999999999987 667888899999999986 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhH
Q psy14768        397 IEDSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~~~  416 (452)
                      |+++|+++.+.+.+.+....
T Consensus       158 i~~l~~~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          158 VEEMFNCITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99999999999987766443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.95  E-value=6e-28  Score=223.00  Aligned_cols=168  Identities=35%  Similarity=0.640  Sum_probs=143.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.+|++.++....+.+   ++..+.+.||||+|+++|..++..+++++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI---QGKRVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE---TTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE---CCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            34589999999999999999999998888888899998888888877   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++++++..+++..|++|||++|.|
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          104 GAILAYDITKRSSFLSVPHWIEDVRKY----AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN  179 (201)
T ss_dssp             EEEEEEETTBHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence            999999999999999999999998876    356799999999999986 678889999999999985699999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      |+++|+++++.+.+..
T Consensus       180 i~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          180 VEEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999887543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.9e-28  Score=229.87  Aligned_cols=171  Identities=28%  Similarity=0.552  Sum_probs=142.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|||||||+++|++..+...+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI---EGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE---TTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            3589999999999999999999998888888899998888888877   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +++..+++.+++...++. |+++||++|.||
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  163 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELREN----ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENV  163 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHH----CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECCCC-CCCH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            99999999999999999999998776    345799999999999976 677888899999998875 999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHH
Q psy14768        398 EDSMNFLVDRIICSKRMEEE  417 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~~~~~~  417 (452)
                      +++|+++++.+.+.....+.
T Consensus       164 ~~l~~~l~~~i~~~~~~~~~  183 (223)
T 3cpj_B          164 DKAFEELINTIYQKVSKHQM  183 (223)
T ss_dssp             HHHHHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHHHHHHhhhccc
Confidence            99999999999877655443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=1.5e-27  Score=216.12  Aligned_cols=167  Identities=29%  Similarity=0.556  Sum_probs=144.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++ +.....+..   ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   78 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEG   78 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEE---TTEEEEEEEEECCCC---CTTHHHHHHHCSE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEE---CCcEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            358999999999999999999999888877777775 444455555   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.++.+..+++..++..+++. |+++||++|.|++
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi~  154 (189)
T 4dsu_A           79 FLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETSAKTRQGVD  154 (189)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            999999999999999999998887752   345799999999999987778889999999999987 9999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14768        399 DSMNFLVDRIICSKR  413 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~  413 (452)
                      ++|+++.+.+...+.
T Consensus       155 ~l~~~l~~~~~~~~~  169 (189)
T 4dsu_A          155 DAFYTLVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999876654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=1.3e-27  Score=216.57  Aligned_cols=168  Identities=28%  Similarity=0.577  Sum_probs=151.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++.++....+..   ++..+.+.+|||+|++.|..++..+++++|
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   84 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV---GGKYVKLQIWDTAGQERFRSVTRSYYRGAA   84 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence            34689999999999999999999998888888899998888888777   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++.+++...++. |+++||++|.|
T Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  159 (186)
T 2bme_A           85 GALLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGEN  159 (186)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecCCCCCC
Confidence            999999999999999999999888776    446799999999999976 677888899999998875 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy14768        397 IEDSMNFLVDRIICSKR  413 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~  413 (452)
                      |+++|+++++.+.+...
T Consensus       160 i~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          160 VEEAFVQCARKILNKIE  176 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999886544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-27  Score=221.40  Aligned_cols=165  Identities=31%  Similarity=0.552  Sum_probs=150.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|++|||||||+++|+++.+...+.+|++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI---NGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            4589999999999999999999998888888899999998888887   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +++..+++++++...++. |++|||++|.||
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~gv  176 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNV  176 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            99999999999999999999998876    456799999999999976 677888899999988876 999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14768        398 EDSMNFLVDRIICS  411 (452)
Q Consensus       398 ~~lf~~i~~~i~~~  411 (452)
                      +++|+++++.+...
T Consensus       177 ~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          177 EKLFLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=1.3e-27  Score=218.38  Aligned_cols=167  Identities=28%  Similarity=0.561  Sum_probs=147.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI---DGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE---TTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE---CCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34689999999999999999999998888888888888888878777   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+++.+..|+..+...    ...++|++||+||+|+.+ +++..+++++++...++. |+++||++|.|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g  170 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACN  170 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            999999999999999999999998876    456799999999999976 677888999999999875 99999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      |+++|+++++.+.+..
T Consensus       171 i~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          171 VEEAFINTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=218.86  Aligned_cols=166  Identities=31%  Similarity=0.570  Sum_probs=142.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL---RGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE---CCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            34689999999999999999999998888888899998888888877   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+++..|+..+...    ...++|++||+||+|+.+ +++..++++++++.+....|+++||++|.|
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~----~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence            999999999999999999999888776    456799999999999976 677888899999886555699999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRIIC  410 (452)
Q Consensus       397 v~~lf~~i~~~i~~  410 (452)
                      |+++|+++++.+.+
T Consensus       177 i~~l~~~l~~~i~~  190 (192)
T 2il1_A          177 VDEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.95  E-value=4.6e-28  Score=224.90  Aligned_cols=167  Identities=27%  Similarity=0.463  Sum_probs=142.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.+|++.++ ...+.+   ++..+.+.||||+|+++|..++..+++++|+
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV---DGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEEC---SSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEE---CCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            468999999999999999999999888888888888665 445555   7788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc--------ccHHHHHHHHHHcCCCEEEE
Q psy14768        319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ--------VEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~--------~~~e~~~~~~~~~~~~~~~e  388 (452)
                      +|+|||++++.+|+.+. .|+..+...     ..++|++||+||+|+.+ +.        +..+++.+++..++..+|++
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  158 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRF-----APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE  158 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence            99999999999999996 799888775     24799999999999965 22        37888999999999867999


Q ss_pred             ecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      |||++|.||+++|+++++.+.+....
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          159 CSSKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999876543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=1.6e-27  Score=212.03  Aligned_cols=164  Identities=32%  Similarity=0.578  Sum_probs=143.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   79 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI---NGKKVKLQIWDTAGQERFRTITTAYYRGAMGI   79 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES---SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence            579999999999999999999998888888899998888887777   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      |+|||++++.+++.+..|+..+...    ...++|++||+||+|+.++.+..+++.++++.+++. ++++||++|.|+++
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~  154 (170)
T 1g16_A           80 ILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNE  154 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEECCCCCCHHH
Confidence            9999999999999999999988876    346799999999999966777888999999999986 99999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy14768        400 SMNFLVDRIICS  411 (452)
Q Consensus       400 lf~~i~~~i~~~  411 (452)
                      +|+++.+.+.+.
T Consensus       155 l~~~l~~~~~~~  166 (170)
T 1g16_A          155 IFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=3.6e-27  Score=211.59  Aligned_cols=169  Identities=30%  Similarity=0.587  Sum_probs=146.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV---DGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE---TTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE---CCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            4589999999999999999999998888888899998888888777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||+++..+++.+..|+..+..........++|++||+||+|+.++++..+++.+++......+|+++||++|.||+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            99999999999999999999998876432233678999999999998777788899999985555559999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|+++++.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=218.29  Aligned_cols=168  Identities=22%  Similarity=0.246  Sum_probs=144.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-hhhhhhcCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-MSRVYYQNS  316 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-~~~~~i~~a  316 (452)
                      ...+||+++|++|||||||+++|++......+.++++.++....+.+   ++..+.+.+|||+|++.+.. ++..+++.+
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV---DKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE---TTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE---CCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            45689999999999999999999875554455677777877777777   88899999999999988765 778889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..+++++++..+++. |+++||++|.
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sa~~~~  173 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHH  173 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEEBTTTTB
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEEcCCCCC
Confidence            99999999999999999999999887652   224799999999999986 778888999999998874 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhh
Q psy14768        396 MIEDSMNFLVDRIICSK  412 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~  412 (452)
                      ||+++|+++++.+...+
T Consensus       174 ~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          174 NTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             SHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.95  E-value=3.4e-27  Score=213.39  Aligned_cols=166  Identities=29%  Similarity=0.502  Sum_probs=149.0

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+..   ++..+.+.+|||+|++.|..++..+++++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI---DNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe---CCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            44579999999999999999999999988888888888777 555566   88889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCC-CC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK-EH  394 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAk-tg  394 (452)
                      |++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..+++++++..+++. |+++||+ ++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~  166 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPP  166 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEeccCCCC
Confidence            99999999999999999999998886642   346799999999999987 788899999999999976 9999999 99


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDRIIC  410 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~  410 (452)
                      .||+++|+++++.+.+
T Consensus       167 ~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          167 LNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=9.6e-28  Score=213.74  Aligned_cols=164  Identities=34%  Similarity=0.593  Sum_probs=141.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++++|+
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI---GGKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES---SSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE---CCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            4589999999999999999999998888888899998888778777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+++.+..|+..+...    ...++|++||+||+|+.+ +.+..++++++++.++.. ++++||++|.|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  156 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKM----LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGI  156 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCCCH
Confidence            99999999999999999999888765    234689999999999976 677888999999998865 999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRIIC  410 (452)
Q Consensus       398 ~~lf~~i~~~i~~  410 (452)
                      +++|+++++.+.+
T Consensus       157 ~~l~~~l~~~~~~  169 (170)
T 1z08_A          157 EELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=2.3e-27  Score=212.86  Aligned_cols=164  Identities=29%  Similarity=0.600  Sum_probs=148.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++++|+
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE---TTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE---CCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            4689999999999999999999998888888889998888887777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+++.+..|+..+...    ...++|++||+||+|+.+ +.+..++++++++.+++. |+++||++|.||
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  165 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENV  165 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            99999999999999999999988876    446799999999999976 677888999999998875 999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRIIC  410 (452)
Q Consensus       398 ~~lf~~i~~~i~~  410 (452)
                      +++|+++++.+.+
T Consensus       166 ~~l~~~l~~~i~~  178 (179)
T 1z0f_A          166 EDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.95  E-value=2.8e-27  Score=213.52  Aligned_cols=166  Identities=30%  Similarity=0.440  Sum_probs=146.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+..   ++..+.+.+|||+|++.|..++..+++.+|+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV---NGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE---CCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            358999999999999999999998888888889888777 556666   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..++++++++.+++. |+++||++|.|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  156 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTA  156 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCTTSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEecCCCCCH
Confidence            999999999999999999998886652   335799999999999976 788899999999999986 999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14768        398 EDSMNFLVDRIICSK  412 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~  412 (452)
                      +++|+++++.+...+
T Consensus       157 ~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          157 VDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=2.1e-27  Score=221.71  Aligned_cols=167  Identities=20%  Similarity=0.351  Sum_probs=145.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|.+|||||||+++|+++.+...+.+|++.++ ...+.+   ++..+.+.||||+|+++|..++..+++++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLET---EEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-----CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEE---CCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            4469999999999999999999999999888889998776 345555   778899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHH-HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFES-VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~-~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+. +..|+..+...     ..++|++||+||+|+.+             +.+..+++.+++..+++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDY-----CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHH-----CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            9999999999999999 68899999876     25799999999999964             56889999999999999


Q ss_pred             CEEEEecCCCCcc-HHHHHHHHHHHHHHhhh
Q psy14768        384 MSWIEVSSKEHLM-IEDSMNFLVDRIICSKR  413 (452)
Q Consensus       384 ~~~~evSAktg~n-v~~lf~~i~~~i~~~~~  413 (452)
                      .+|++|||++|.| |+++|+++++.+.....
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            6699999999998 99999999999886544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=4e-27  Score=214.57  Aligned_cols=165  Identities=32%  Similarity=0.633  Sum_probs=149.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++.+.++....+..   ++..+.+.||||+|++.|..++..+++.+|+
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR---HDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE---TTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE---CCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            3589999999999999999999998888888889888887777776   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..++++++++.+++. |+++||++|.||
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  172 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINV  172 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            99999999999999999999988876    346799999999999976 677788999999999875 999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14768        398 EDSMNFLVDRIICS  411 (452)
Q Consensus       398 ~~lf~~i~~~i~~~  411 (452)
                      +++|+++++.+.+.
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=3.4e-27  Score=212.58  Aligned_cols=165  Identities=28%  Similarity=0.548  Sum_probs=148.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV---NDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE---TTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE---CCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            4589999999999999999999998888888889998888888777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +++..+++++++...++. |+++||++|.||
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  162 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQ----GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSAKTATNV  162 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCSSSCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEECCCCCCH
Confidence            99999999999999999999988876    446799999999999976 677888999999998875 999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14768        398 EDSMNFLVDRIICS  411 (452)
Q Consensus       398 ~~lf~~i~~~i~~~  411 (452)
                      +++|+++++.+...
T Consensus       163 ~~l~~~l~~~~~~~  176 (181)
T 2efe_B          163 KEIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998877543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.3e-27  Score=211.68  Aligned_cols=167  Identities=29%  Similarity=0.580  Sum_probs=140.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ...++|+++|.+|+|||||+++|++..+. ..+.++++.++....+..   ++..+.+.+|||+|++.|..++..+++++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV---DGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE---TTEEEEEEEEECCCC--------CCGGGC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            34689999999999999999999987775 467789998888777777   88889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|||++++.+++++..|+..+...    ...++|++||+||+|+.+ +.+..++++++++.+++. ++++||++|.
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  159 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGL  159 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeCCCCC
Confidence            9999999999999999999999988876    346799999999999987 677888899999998886 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhh
Q psy14768        396 MIEDSMNFLVDRIICSK  412 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~  412 (452)
                      ||+++|+++.+.+.+.+
T Consensus       160 gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          160 NVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             THHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999886543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=5.4e-27  Score=213.67  Aligned_cols=164  Identities=18%  Similarity=0.300  Sum_probs=141.2

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....+||+++|++|||||||+++++++.+...+.++. .++ ...+.+   ++..+.+.||||+|++.|.     +++++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVV---DGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEE---TTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEE---CCEEEEEEEEECCCChhhh-----eecCC
Confidence            3457999999999999999999999988887777763 344 366666   8889999999999999877     78899


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAkt  393 (452)
                      |++|+|||++++.+|+++..|+..+....   ...++|++||+||+|+.+   +.+..+++.+++..++...|++|||++
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  163 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFR---NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATY  163 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTS---CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCC
Confidence            99999999999999999999999988762   125689999999999952   778899999999999866699999999


Q ss_pred             CccHHHHHHHHHHHHHHhhh
Q psy14768        394 HLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~~~  413 (452)
                      |.||+++|+++++.+.+.+.
T Consensus       164 ~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          164 GLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             TBTHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999886643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=4.2e-27  Score=215.01  Aligned_cols=167  Identities=29%  Similarity=0.576  Sum_probs=150.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++..+.+.||||+|+++|..++..+++.+|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML---GTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE---TTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            34689999999999999999999998888888889898888887777   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++..++...++. |+++||++|.|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  174 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETSALDSTN  174 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            999999999999999999999988776    346799999999999976 677888899999988875 99999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      |+++|+++++.+.+..
T Consensus       175 i~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          175 VELAFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=8.9e-28  Score=219.46  Aligned_cols=166  Identities=34%  Similarity=0.634  Sum_probs=151.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+.++....+..   ++..+.+.||||+|++.|..++..+++.+|+
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR---HEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE---TTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE---CCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            4689999999999999999999998888888888888888888777   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..++++.++..+++. |+++||++|.||
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  173 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEASAKENISV  173 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEECCCCCCH
Confidence            99999999999999999999999876    456799999999999976 778889999999999985 999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14768        398 EDSMNFLVDRIICSK  412 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~  412 (452)
                      +++|+++++.+.+..
T Consensus       174 ~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          174 RQAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=7.7e-27  Score=214.94  Aligned_cols=166  Identities=33%  Similarity=0.635  Sum_probs=150.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|++..+...+.++++.++....+..   ++..+.+.||||+|+++|..++..+++++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR---NDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE---CCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            3589999999999999999999999888888899998888777777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++.+++..+++. |+++||++|.||
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  158 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINV  158 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBTTTTBSS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEECCCCCCH
Confidence            99999999999999999999998876    346799999999999987 677888999999999875 999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14768        398 EDSMNFLVDRIICSK  412 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~  412 (452)
                      +++|+++++.+.+..
T Consensus       159 ~~l~~~l~~~i~~~~  173 (203)
T 1zbd_A          159 KQTFERLVDVICEKM  173 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.95  E-value=4.1e-27  Score=209.18  Aligned_cols=162  Identities=27%  Similarity=0.583  Sum_probs=146.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+   ++..+.+.+|||+|++.|..++..+++.+|+
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   81 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL---DDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence            3589999999999999999999998888888888888887777777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+++.+..|+..+...    ...++|++||+||+|+.+ +.+..+++.+++...++. |+++||++|.|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gi  156 (170)
T 1r2q_A           82 AIVVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNV  156 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEeCCCCCCH
Confidence            99999999999999999999988776    456799999999999976 667788899999988875 999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRI  408 (452)
Q Consensus       398 ~~lf~~i~~~i  408 (452)
                      +++|++|++.+
T Consensus       157 ~~l~~~i~~~~  167 (170)
T 1r2q_A          157 NEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=6.4e-27  Score=208.16  Aligned_cols=162  Identities=28%  Similarity=0.532  Sum_probs=147.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++.+.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY---QNELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE---CCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            3589999999999999999999998888888899998888777777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+++.+..|+..+...    .....|++||+||+|+.+ +++..++...++...+.. |+++||++|.|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  156 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAINI  156 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcCH
Confidence            99999999999999999999988876    457799999999999987 677788899999998875 999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRI  408 (452)
Q Consensus       398 ~~lf~~i~~~i  408 (452)
                      +++|+++.+.+
T Consensus       157 ~~l~~~i~~~i  167 (170)
T 1z0j_A          157 NELFIEISRRI  167 (170)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=6.4e-27  Score=210.28  Aligned_cols=169  Identities=26%  Similarity=0.445  Sum_probs=148.3

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....++|+++|.+|+|||||+++|++..+...+.++++.++. ..+.+   ++..+.+.+|||+|+++|..++..+++.+
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV---DGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE---TTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE---CCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            345689999999999999999999999888888888887765 55555   77888999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|||+++..+++.+..|+..+....   ...++|++||+||+|+.+ +++..+++..++...++. |+++||++|.
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~  157 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRL  157 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTB
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEecCCCCC
Confidence            99999999999999999999988885442   345799999999999987 677888899999888875 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhhh
Q psy14768        396 MIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~  413 (452)
                      ||+++|+++.+.+.+.+.
T Consensus       158 gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          158 NVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhhc
Confidence            999999999999876544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=218.93  Aligned_cols=167  Identities=28%  Similarity=0.576  Sum_probs=140.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++.+|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV---GGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE---TTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE---CCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            34689999999999999999999998888888899998888888777   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++.+++...++. |++|||++|.|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~g~g  174 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTL----ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGEN  174 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEECTTTCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEeCCCCCC
Confidence            999999999999999999999988776    346799999999999976 677788899999998875 99999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy14768        397 IEDSMNFLVDRIICSK  412 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~  412 (452)
                      |+++|+++++.+.+..
T Consensus       175 i~~l~~~l~~~i~~~~  190 (200)
T 2o52_A          175 VEEAFLKCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=3.6e-27  Score=210.00  Aligned_cols=165  Identities=22%  Similarity=0.258  Sum_probs=131.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-hhhhhhcCCCE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-MSRVYYQNSDG  318 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-~~~~~i~~ad~  318 (452)
                      .+||+++|++|||||||+++|++..+.....++.+.+.....+.+   ++..+.+.+|||+|++.+.. ++..+++.+|+
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~   78 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV---DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA   78 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE---TTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE---CCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence            378999999999999999999987666666666777777777777   88899999999999998876 67788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..+++.++++.+++. |+++||++|.|+
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v  154 (169)
T 3q85_A           79 FLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETSAALHHNT  154 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHhcc---cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEecCccCCCH
Confidence            999999999999999999999887762   234799999999999986 788899999999999985 999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14768        398 EDSMNFLVDRIICS  411 (452)
Q Consensus       398 ~~lf~~i~~~i~~~  411 (452)
                      +++|+++++.+...
T Consensus       155 ~~l~~~l~~~i~~~  168 (169)
T 3q85_A          155 RELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=6e-27  Score=214.28  Aligned_cols=167  Identities=26%  Similarity=0.472  Sum_probs=148.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.+|++.++.. .+.+   ++..+.+.+|||+|+++|..++..+++++|
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKY---KNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE---TTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEE---CCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            346899999999999999999999998888888998877654 4555   888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768        318 GCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAkt  393 (452)
                      ++|+|||++++.+|+++ ..|+..+...     ..++|++||+||+|+.+   +.+..+++.++++.+++..|+++||++
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-----IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999999997 6788888765     35799999999999975   678889999999999987799999999


Q ss_pred             CccHHHHHHHHHHHHHHhhh
Q psy14768        394 HLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~~~  413 (452)
                      |.||+++|+++++.+.+.+.
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999876543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=6.4e-27  Score=213.32  Aligned_cols=168  Identities=33%  Similarity=0.584  Sum_probs=151.1

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++.+|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV---DGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE---CCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            4589999999999999999999998888888899998888888777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||++++.+++.+..|+..+....   ...++|++||+||+|+.++.+..+++.+++...++. |+++||+++.||+
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQ  166 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCC---SCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecCCCCCCHH
Confidence            999999999999999999998887652   235799999999999976777888899999998876 9999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14768        399 DSMNFLVDRIICSKR  413 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~  413 (452)
                      ++|+++++.+.+...
T Consensus       167 ~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          167 CAFEELVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=2.2e-27  Score=213.20  Aligned_cols=169  Identities=29%  Similarity=0.431  Sum_probs=146.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC-eeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG-RPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~-~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ...++|+++|++|+|||||+++|+++.+...+.+|++.++....+.+   ++ ..+.+.+|||+|++.|..++..+++++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   80 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITL---PGNLNVTLQIWDIGGQTIGGKMLDKYIYGA   80 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEE---TTTEEEEEEEEECTTCCTTCTTHHHHHTTC
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEe---CCCCEEEEEEEECCCCccccchhhHHHhhC
Confidence            34689999999999999999999998888778889988888888777   55 678999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      |++|+|||++++.+|+.+..|+..+......  ....| ++||+||+|+.+ +.+..+++.++++.+++. ++++||++|
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  157 (178)
T 2hxs_A           81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEE--SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVSAKTG  157 (178)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHHH--HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEECTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcc--cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEeCCCC
Confidence            9999999999999999999999888764210  11345 899999999976 677888999999998875 999999999


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q psy14768        395 LMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~  412 (452)
                      .||+++|+++++.+.+.+
T Consensus       158 ~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             TTHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999886543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.4e-27  Score=217.49  Aligned_cols=169  Identities=23%  Similarity=0.423  Sum_probs=143.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.++++..+ ...+..   ++..+.+.||||+|++.|..++..+++.+|
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL---GKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-------CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE---CCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3468999999999999999999999988888888888776 445554   677899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..+++..++..+++. |+++||++|.|
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~  173 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGH---GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESSARENQL  173 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEeCCCCCC
Confidence            9999999999999999999999887652   335689999999999986 778889999999999985 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy14768        397 IEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~~  414 (452)
                      |+++|+++++.+.+.+..
T Consensus       174 v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          174 TQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999998876543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.94  E-value=5.2e-27  Score=211.08  Aligned_cols=172  Identities=25%  Similarity=0.539  Sum_probs=136.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecC-CeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG-GRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~-~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ...++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   + +..+.+.+|||+|++.|..++..+++.+
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV---DGDKVATMQVWDTAGQERFQSLGVAFYRGA   82 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECC---SSSCCEEEEEECCC----------CCSTTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEE---cCCcEEEEEEEECCCChHhhhhhHHHhhcC
Confidence            34689999999999999999999998888888899998888887776   5 5678999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      |++|+|||++++.+++.+..|+..+..........++|++||+||+|+.+  +.+..+++.+++......+|+++||++|
T Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (182)
T 1ky3_A           83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA  162 (182)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence            99999999999999999999999887764322336799999999999965  5577888999988655555999999999


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q psy14768        395 LMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~  412 (452)
                      .||+++|+++.+.+.+.+
T Consensus       163 ~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          163 INVDTAFEEIARSALQQN  180 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh
Confidence            999999999999887543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=3.9e-27  Score=209.28  Aligned_cols=161  Identities=28%  Similarity=0.532  Sum_probs=145.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++++|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   79 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI---NEHTVKFEIWDTAGQERFASLAPXYYRNAQAA   79 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCChhhhhhhhhhhccCcEE
Confidence            479999999999999999999998888888899998888877777   88889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |+|||++++.+++.+..|+..+...    ...++|++||+||+|+.+    +++..++.++++...++. |+++||++|.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~  154 (170)
T 1ek0_A           80 LVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGE  154 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCT
T ss_pred             EEEEecCChHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEeCCCCC
Confidence            9999999999999999999988876    356799999999999964    567788888999988875 9999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRI  408 (452)
Q Consensus       396 nv~~lf~~i~~~i  408 (452)
                      |++++|+++.+.+
T Consensus       155 gi~~l~~~l~~~i  167 (170)
T 1ek0_A          155 NVNDVFLGIGEKI  167 (170)
T ss_dssp             THHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.94  E-value=1.1e-26  Score=208.95  Aligned_cols=166  Identities=19%  Similarity=0.290  Sum_probs=138.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|++|||||||+++|+++.+.. +.+|++..+ ...+.+   ++..+.+.+|||+|+++     ..+++++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV---DGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEE---TTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEE---CCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            346899999999999999999999988776 678877544 556666   88889999999999986     45788999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      ++|+|||++++.+|+.+..|+..+..... ....++|++||+||+|+.+   +.+..+++++++..++..+|+++||++|
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRG-EGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG  153 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHC-SSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence            99999999999999999998776655421 1235799999999999942   6788899999998875556999999999


Q ss_pred             ccHHHHHHHHHHHHHHhhhh
Q psy14768        395 LMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~~~  414 (452)
                      .||+++|+++++.+.+.+..
T Consensus       154 ~~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             BTHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhh
Confidence            99999999999998876543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.94  E-value=1.2e-26  Score=210.84  Aligned_cols=169  Identities=29%  Similarity=0.527  Sum_probs=148.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeE-EEEEEeeecCCe---------eEEEEEEecCCcchhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS-TKLLSHKKYGGR---------PVKLQIWDIAGQDRYIC  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~-~~~i~~~~~~~~---------~~~l~l~DtaG~e~~~~  307 (452)
                      ...++|+++|.+|+|||||+++|++..+...+.++++.++. ...+..   ++.         .+.+.+|||+|++.|..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR---ANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC---TTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe---cCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            34689999999999999999999998888888899998887 555555   554         78999999999999999


Q ss_pred             hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEE
Q psy14768        308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~  386 (452)
                      ++..+++++|++|+|||++++.+++.+..|+..+....   ...++|++||+||+|+.+ +.+..+++++++..+++. +
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~  161 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-Y  161 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-E
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-E
Confidence            99999999999999999999999999999999887762   225799999999999976 677888999999999886 9


Q ss_pred             EEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      +++||++|.||+++|++|.+.+.+...
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.1e-27  Score=215.37  Aligned_cols=165  Identities=30%  Similarity=0.552  Sum_probs=148.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+   ++..+.+.||||+|+++|..++..+++.+|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC---GNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC---SSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe---CCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            34689999999999999999999998888788899998888777777   778899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..++++++++.+++. |++|||++|.|
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g  172 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAIN  172 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECBTTTTBS
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCcC
Confidence            999999999999999999999998876    446799999999999976 677888999999998875 99999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRIIC  410 (452)
Q Consensus       397 v~~lf~~i~~~i~~  410 (452)
                      |+++|+++.+.+.+
T Consensus       173 i~~l~~~l~~~i~~  186 (192)
T 2fg5_A          173 IEELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=6.4e-27  Score=218.51  Aligned_cols=167  Identities=20%  Similarity=0.320  Sum_probs=138.5

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hhhhhhhhhcC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YICMSRVYYQN  315 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~~~~~~~i~~  315 (452)
                      ...+||+++|++|||||||+++|++... +....++++.++....+.+   ++..+.+.+|||+|++. +..+...+++.
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~---~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV---DGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE---TTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE---CCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            3458999999999999999999996332 2333456888887777777   88899999999999987 55667778999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      +|++|+|||+++..+|+.+..|...+....   ...++|+|||+||+|+.+ +++..++.+.++..+++. |++|||++|
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~SAk~g  187 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQ  187 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSG---GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEEeCCCC
Confidence            999999999999999999999988776531   234699999999999976 677888888888888875 999999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy14768        395 LMIEDSMNFLVDRIICS  411 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~  411 (452)
                      .||+++|+++++.+...
T Consensus       188 ~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          188 HNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.94  E-value=4.7e-27  Score=214.36  Aligned_cols=166  Identities=20%  Similarity=0.321  Sum_probs=141.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|.+|||||||+++|+++.+...+.+|++.++ ...+.+   ++..+.+.||||+|+++|..+ ..+++.+|
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETV---DHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEE---CCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            4468999999999999999999999888888889988776 344555   788899999999999998875 67999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC-CCCc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS-KEHL  395 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA-ktg~  395 (452)
                      ++|+|||+++..+|+.+..|+..+...... ...++|++||+||+|+.+ +++..+++.+++..+++. |++||| ++|.
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~g~  171 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSACLDFE  171 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSSSCSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeecCccc
Confidence            999999999999999999999988765210 125799999999999976 778889999999999985 999999 8999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRIIC  410 (452)
Q Consensus       396 nv~~lf~~i~~~i~~  410 (452)
                      ||+++|+++++.+.+
T Consensus       172 gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          172 HVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhh
Confidence            999999999988753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.94  E-value=4.5e-27  Score=208.74  Aligned_cols=163  Identities=27%  Similarity=0.624  Sum_probs=148.3

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.+..++..+++.+|+
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   80 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV---NDEDVRLMLWDTAGQEEFDAITKAYYRGAQA   80 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE---TTEEEEEEEECCTTGGGTTCCCHHHHTTCCE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE---CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCE
Confidence            4689999999999999999999998888888899998888888877   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+++.+..|+..+....     .++|+++|+||+|+.+ +++..++++++++.+++. ++++||+++.|+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  154 (168)
T 1z2a_A           81 CVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNV  154 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEecCCCCCH
Confidence            999999999999999999999887762     5689999999999976 677788999999999885 999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRIIC  410 (452)
Q Consensus       398 ~~lf~~i~~~i~~  410 (452)
                      +++|+++.+.+.+
T Consensus       155 ~~l~~~l~~~~~~  167 (168)
T 1z2a_A          155 SEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=207.58  Aligned_cols=166  Identities=22%  Similarity=0.349  Sum_probs=132.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--hhhhhhhhhcCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--YICMSRVYYQNS  316 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~~~~~~i~~a  316 (452)
                      ..++|+++|++|||||||+++|++..+...+ ++++.++....+.+   ++..+.+.+|||+|++.  +..++..+++.+
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   78 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTV---DGEDTTLVVVDTWEAEKLDKSWSQESCLQGG   78 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEE---TTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEE---CCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence            3589999999999999999999987765443 45666776667766   88889999999999987  566778889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +++..++++.++..+++. |++|||++|.
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~  154 (175)
T 2nzj_A           79 SAYVIVYSIADRGSFESASELRIQLRRTH---QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETSATLQH  154 (175)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECBTTTTB
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhh---ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEecCCCC
Confidence            99999999999999999999988887642   234699999999999987 677888888999888875 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhh
Q psy14768        396 MIEDSMNFLVDRIICSK  412 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~  412 (452)
                      ||+++|+++++.+...+
T Consensus       155 gi~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          155 NVAELFEGVVRQLRLRR  171 (175)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999886543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.94  E-value=9.3e-27  Score=206.46  Aligned_cols=163  Identities=24%  Similarity=0.476  Sum_probs=143.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||+++++++.+...+.++++..+. ..+.+   ++..+.+.+|||+|+++|..++..+++++|++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   78 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV---DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGF   78 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES---SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE---CCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence            579999999999999999999998888888888886653 44555   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..+++.++++.++..+|+++||++|.|++
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (167)
T 1c1y_A           79 ALVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhh---CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence            99999999999999999988887652   345799999999999976 66778899999999855569999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        399 DSMNFLVDRII  409 (452)
Q Consensus       399 ~lf~~i~~~i~  409 (452)
                      ++|+++.+.+.
T Consensus       156 ~l~~~l~~~i~  166 (167)
T 1c1y_A          156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.94  E-value=5.7e-27  Score=210.22  Aligned_cols=162  Identities=31%  Similarity=0.595  Sum_probs=147.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||+++++++.+...+.++++.++....+.+   ++..+.+.+|||+|++.|..++..+++++|++
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE---CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            589999999999999999999998888888899999888888877   88889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+++.+..|+..+...    ...++|++||+||+|+.+ +++..++...++...++. |+++||++|.|++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTE----RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVK  165 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            9999999999999999999888776    346799999999999976 677788889999988875 9999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        399 DSMNFLVDRII  409 (452)
Q Consensus       399 ~lf~~i~~~i~  409 (452)
                      ++|+++.+.+.
T Consensus       166 ~l~~~l~~~~~  176 (179)
T 2y8e_A          166 QLFRRVAAALP  176 (179)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=9.9e-27  Score=214.23  Aligned_cols=169  Identities=25%  Similarity=0.371  Sum_probs=111.7

Q ss_pred             CcccEEEeeecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCe--eEEEEEEecCCcchhhhhhhhhhc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGR--PVKLQIWDIAGQDRYICMSRVYYQ  314 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~--~~~l~l~DtaG~e~~~~~~~~~i~  314 (452)
                      ..++|+++|.+|+|||||+++|+++  .+...+.+|++.++....+.+   ++.  .+.+.||||+|++.|..++..+++
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI---PDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEEC---TTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE---CCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3589999999999999999999988  788788889888888777777   666  889999999999999999999999


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC---CCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        315 NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG---AMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       315 ~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~---~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ++|++|+|||++++.+|+.+..|+..+...    ..   .++|++||+||+|+.+  +.+..+++.++++.+++. |+++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~  170 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESCKAWFELLKSA----RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDV  170 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHHHHHHHHHHHH----CSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEEC
T ss_pred             hCcEEEEEEECCCHHHHHHHHHHHHHHHHh----hcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEe
Confidence            999999999999999999999999999876    33   5799999999999975  567788999999999865 9999


Q ss_pred             cCCC-CccHHHHHHHHHHHHHHhhhhh
Q psy14768        390 SSKE-HLMIEDSMNFLVDRIICSKRME  415 (452)
Q Consensus       390 SAkt-g~nv~~lf~~i~~~i~~~~~~~  415 (452)
                      ||++ |.||+++|+++++.+.+.....
T Consensus       171 Sa~~~~~gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          171 SANPPGKDADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence            9999 9999999999999887665443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.94  E-value=1e-26  Score=211.85  Aligned_cols=164  Identities=30%  Similarity=0.550  Sum_probs=145.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-hhhhhhhcCCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-CMSRVYYQNSD  317 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-~~~~~~i~~ad  317 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|+++|. .++..+++++|
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI---DGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE---TTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE---CCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            4589999999999999999999998888888899998888888877   8888999999999999998 88899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC--
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH--  394 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg--  394 (452)
                      ++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +++..+++++++..+++. |+++||+++  
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~  171 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPND  171 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCCcCCc
Confidence            9999999999999999999999887762   246799999999999976 677888999999999886 999999999  


Q ss_pred             -ccHHHHHHHHHHHHH
Q psy14768        395 -LMIEDSMNFLVDRII  409 (452)
Q Consensus       395 -~nv~~lf~~i~~~i~  409 (452)
                       .||+++|+++++.+.
T Consensus       172 ~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GSCHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHHHh
Confidence             999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.94  E-value=1e-26  Score=211.06  Aligned_cols=164  Identities=24%  Similarity=0.408  Sum_probs=143.3

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|++|||||||+++|+++.+...+.++++.++. ..+.+   ++..+.+.+|||+|++.|..++..+++++|
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   80 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSD   80 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC---SSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEE---CCEEEEEEEEECCCChhhhhhHHhhcCCCc
Confidence            34689999999999999999999998888888888887663 44555   778899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+.+ ..|+..+...     ..++|++||+||+|+.+             +.+..+++.++++.++.
T Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (184)
T 1m7b_A           81 AVLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA  155 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCC
Confidence            99999999999999999 6798888765     25799999999999963             45778889999999986


Q ss_pred             CEEEEecCC-CCccHHHHHHHHHHHHHH
Q psy14768        384 MSWIEVSSK-EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       384 ~~~~evSAk-tg~nv~~lf~~i~~~i~~  410 (452)
                      .+|++|||+ ++.||+++|+.+++.+++
T Consensus       156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          156 ATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            679999999 589999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=3e-26  Score=209.57  Aligned_cols=163  Identities=28%  Similarity=0.549  Sum_probs=144.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCee---------------------------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRP---------------------------  291 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~---------------------------  291 (452)
                      ..++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++..                           
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL---NDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET---TC-----------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe---cCccccccccccccccccccccccccccccc
Confidence            4689999999999999999999998888888899998888877776   5544                           


Q ss_pred             ----------EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        292 ----------VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       292 ----------~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                                +.+.||||+|++.|..++..+++.+|++|+|||++++.+++++..|+..+...      ..+|+++|+||
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~------~~~piilv~NK  156 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS------SNYIIILVANK  156 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH------SCCEEEEEEEC
T ss_pred             cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh------CCCcEEEEEEC
Confidence                      88999999999999999999999999999999999999999999999988876      23999999999


Q ss_pred             CCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        362 CDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       362 ~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +|+.++++..+++++++...++. |+++||++|.|++++|+++.+.+.+.
T Consensus       157 ~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          157 IDKNKFQVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             TTCC-CCSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            99444778889999999998875 99999999999999999999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=212.55  Aligned_cols=167  Identities=25%  Similarity=0.420  Sum_probs=138.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.+|++..+ ...+..   ++..+.+.+|||+|+++|..++..+++++|
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSV---DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEE---TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEE---CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3468999999999999999999999888888888887555 445555   788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+++. .|+..+...     ..++|++||+||+|+.+             +.+..+++..++..++.
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH-----CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA  168 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence            999999999999999997 698888775     24799999999999863             45678889999999998


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      .+|++|||++|.||+++|+++++.+.+.+.
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            669999999999999999999999876544

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=5.6e-27  Score=218.34  Aligned_cols=169  Identities=31%  Similarity=0.567  Sum_probs=147.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe----------eEEEEEEecCCcchhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR----------PVKLQIWDIAGQDRYIC  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~----------~~~l~l~DtaG~e~~~~  307 (452)
                      ...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++.          .+.+.||||+|+++|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY---NAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE---EC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE---CCccccccccCceeEEEEEEECCCcHhHHh
Confidence            34589999999999999999999998888888888888887777766   444          78899999999999999


Q ss_pred             hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEE
Q psy14768        308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~  386 (452)
                      ++..+++.+|++|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..+++++++..+++. |
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~  175 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-Y  175 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-E
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-E
Confidence            99999999999999999999999999999988776541   125799999999999976 677888999999999986 9


Q ss_pred             EEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ++|||+++.||+++|+++++.+.+...
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999876533

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=2e-26  Score=213.47  Aligned_cols=165  Identities=31%  Similarity=0.571  Sum_probs=149.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++.+|+
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI---NGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE---TTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE---CCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            3589999999999999999999998888888899999988888877   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.++.+..+++.+++..+++. |+++||++|.||+
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  170 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBTTTTBSSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            99999999999999999999988876    345799999999999965777888899999999886 9999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14768        399 DSMNFLVDRIICS  411 (452)
Q Consensus       399 ~lf~~i~~~i~~~  411 (452)
                      ++|+++.+.+.+.
T Consensus       171 ~l~~~l~~~~~~~  183 (213)
T 3cph_A          171 EIFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.94  E-value=1.9e-26  Score=204.72  Aligned_cols=163  Identities=22%  Similarity=0.325  Sum_probs=119.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||++++.+..+. ...++.+..+ ...+.+   ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   76 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVV---DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY   76 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEE---TTEEEEEEEEECC---------------CCEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEE---CCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence            479999999999999999999975543 2234444444 344555   88899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +.+..++.+.++...+.. |+++||++|.|++
T Consensus        77 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  152 (166)
T 3q72_A           77 VIVYSVTDKGSFEKASELRVQLRRAR---QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQ  152 (166)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECBGGGTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEeccCCCCCHH
Confidence            99999999999999999988887652   345799999999999987 778889999999999875 9999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14768        399 DSMNFLVDRIICS  411 (452)
Q Consensus       399 ~lf~~i~~~i~~~  411 (452)
                      ++|+++.+.+...
T Consensus       153 ~l~~~l~~~~~~~  165 (166)
T 3q72_A          153 ALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.94  E-value=6e-27  Score=215.50  Aligned_cols=163  Identities=29%  Similarity=0.583  Sum_probs=136.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++.+|+
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV---DGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE---TTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE---CCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            4689999999999999999999998888788888888888777777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC------C-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP------D-RQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~------~-~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      +|+|||++++.+++.+..|+..+...    ...++|++||+||+|+.      . +.+..++++.++...++. |++|||
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA  178 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDA----AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA  178 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHh----cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence            99999999999999999999988776    34579999999999995      2 667788899999998875 999999


Q ss_pred             CCCccHHHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~  409 (452)
                      ++|.||+++|+++++.+.
T Consensus       179 ~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999998775

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.94  E-value=2e-26  Score=204.09  Aligned_cols=164  Identities=25%  Similarity=0.489  Sum_probs=141.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++..+. ..+..   ++..+.+.+|||+|++++..++..+++.+|+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   78 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   78 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE---TTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEE---CCEEEEEEEEECCCcchhHHHHHHHhhcCCE
Confidence            3589999999999999999999998888788788776553 34455   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+++.+..|+..+....   ...++|++||+||+|+.+ +++..+++.+++...++. ++++||++|.|+
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  154 (168)
T 1u8z_A           79 FLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANV  154 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCCH
Confidence            999999999999999999998887763   235799999999999976 677888999999998875 999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRIIC  410 (452)
Q Consensus       398 ~~lf~~i~~~i~~  410 (452)
                      +++|+++++.+.+
T Consensus       155 ~~l~~~l~~~i~~  167 (168)
T 1u8z_A          155 DKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=1.6e-26  Score=214.53  Aligned_cols=164  Identities=24%  Similarity=0.410  Sum_probs=143.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+   ++..+.+.||||+|++.|..++..+++++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES---SSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE---CCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            4568999999999999999999999988888888888776 344555   778899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+.+ ..|+..+...     ..++|++||+||+|+.+             +.+..++++++++.++.
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA  176 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCC
Confidence            99999999999999999 6898888775     25699999999999963             45778889999999986


Q ss_pred             CEEEEecCC-CCccHHHHHHHHHHHHHH
Q psy14768        384 MSWIEVSSK-EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       384 ~~~~evSAk-tg~nv~~lf~~i~~~i~~  410 (452)
                      ..|++|||+ ++.||+++|+.+++.+++
T Consensus       177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          177 ATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            669999999 689999999999998874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=2e-26  Score=211.48  Aligned_cols=168  Identities=20%  Similarity=0.339  Sum_probs=136.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-hhhhhhhhhcCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-YICMSRVYYQNS  316 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-~~~~~~~~i~~a  316 (452)
                      ..+||+++|++|||||||+|+|++.. ......++++.++....+.+   ++..+.+.+|||+|++. +..++..+++.+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~   81 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV---DGESATIILLDMWENKGENEWLHDHCMQVG   81 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE---TTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE---CCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence            35899999999999999999999632 22333456777887777777   88899999999999876 556777889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|||+++..||+.+..|...+....   ...++|++||+||+|+.+ +.+..++...++..+++. |++|||++|.
T Consensus        82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~SA~~g~  157 (192)
T 2cjw_A           82 DAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIETSAAVQH  157 (192)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTB
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEeccccCC
Confidence            99999999999999999999988776541   235689999999999976 667788888888888765 9999999999


Q ss_pred             cHHHHHHHHHHHHHHhhh
Q psy14768        396 MIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~  413 (452)
                      ||+++|+++++.+.....
T Consensus       158 ~v~~lf~~l~~~~~~~~~  175 (192)
T 2cjw_A          158 NVKELFEGIVRQVRLRRD  175 (192)
T ss_dssp             SHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhhcc
Confidence            999999999998865544

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.94  E-value=2.4e-26  Score=203.33  Aligned_cols=163  Identities=25%  Similarity=0.487  Sum_probs=143.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|++|+|||||+++++++.+...+.++++..+ ...+.+   ++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~   78 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV---DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF   78 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE---CCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            57999999999999999999999888877777777444 555556   78888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||++++.+++.+..|+..+....   ...++|+++|+||+|+.+ +++..++..+++..+++. ++++||++|.|++
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  154 (167)
T 1kao_A           79 ILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMVD  154 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEecCCCCcCHH
Confidence            99999999999999999988887652   335799999999999976 677888899999998886 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|+++.+.+.+
T Consensus       155 ~l~~~l~~~~~~  166 (167)
T 1kao_A          155 ELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.94  E-value=2.9e-26  Score=207.07  Aligned_cols=168  Identities=25%  Similarity=0.486  Sum_probs=146.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+..   ++..+.+.||||+|++.|..++..+++.+|
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE---CCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            3468999999999999999999999888888888877655 334455   778889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ +++..+++.++++.+++. |+++||+++.|
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  167 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETSAKTRAN  167 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeCCCCCCC
Confidence            9999999999999999999998887763   334799999999999976 677888999999999875 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy14768        397 IEDSMNFLVDRIICSKR  413 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~  413 (452)
                      |+++|+++.+.+.+.+.
T Consensus       168 i~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          168 VDKVFFDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.8e-26  Score=209.69  Aligned_cols=163  Identities=23%  Similarity=0.424  Sum_probs=143.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.+|++..+ ...+.+   ++..+.+.+|||+|+++|..++..+++++|+
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV---GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES---SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEE---CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            358999999999999999999999888888888887665 345555   7778999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|+|||++++.+|+.+. .|+..+...     ..++|++||+||+|+.+             +.+..+++.++++.+++.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  167 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEY-----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  167 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence            99999999999999997 798888775     24799999999999975             257788999999999985


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +|++|||++|.||+++|+++++.++.
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            59999999999999999999988763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=9.6e-27  Score=213.05  Aligned_cols=167  Identities=24%  Similarity=0.393  Sum_probs=142.5

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.++++..+. ..+..   ++..+.+.||||+|++.|..++..+++.+|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   81 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISC---DKSVCTLQITDTTGSHQFPAMQRLSISKGH   81 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEE---TTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEE---CCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence            34689999999999999999999998887777788775543 33444   778889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      ++|+|||++++.+|+.+..|+..+.....  ...++|++||+||+|+.++.+..+++..++..+++. |+++||++|.||
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  158 (199)
T 2gf0_A           82 AFILVFSVTSKQSLEELGPIYKLIVQIKG--SVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETSAKMNYNV  158 (199)
T ss_dssp             EEEEEEETTCHHHHHTTHHHHHHHHHHHS--CGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECBTTTTBSH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEecCCCCCH
Confidence            99999999999999999888877766421  124689999999999987677788889999998875 999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy14768        398 EDSMNFLVDRIICS  411 (452)
Q Consensus       398 ~~lf~~i~~~i~~~  411 (452)
                      +++|+++++.+...
T Consensus       159 ~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          159 KELFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.94  E-value=9e-28  Score=221.02  Aligned_cols=166  Identities=30%  Similarity=0.607  Sum_probs=140.3

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....++|+++|.+|||||||+++|+++.+...+.++++.++....+.+   ++..+.+.||||+|++.|..++..+++++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL---DGKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE---TTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE---CCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            345689999999999999999999999888888899998998888887   88889999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |++|+|||+++..+|+.+..|+..+...    ...++|++||+||+|+.+ +.+..+++++++..+++. |+++||++|.
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSA~~g~  181 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNAT  181 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCCCCC---H
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEEEECCCCC
Confidence            9999999999999999999999999776    446799999999999976 566667788899998887 9999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRIIC  410 (452)
Q Consensus       396 nv~~lf~~i~~~i~~  410 (452)
                      ||+++|+++++.+.+
T Consensus       182 gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          182 NVEQSFMTMAAEIKK  196 (199)
T ss_dssp             HHHHHHHHHTTTTTT
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999877653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=3.2e-26  Score=206.85  Aligned_cols=164  Identities=25%  Similarity=0.471  Sum_probs=143.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+.+   ++..+.+.+|||+|+++|..++..+++.+|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   79 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV   79 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE---TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE---CCEEEEEEEEECCCCHhHHHHHHHhccCCcE
Confidence            458999999999999999999998888888888887555 444555   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|+|||++++.+|+++. .|+..+...     ..++|++||+||+|+.+             +.+..+++..++..++..
T Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  154 (186)
T 1mh1_A           80 SLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  154 (186)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHh-----CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence            99999999999999997 688888775     23799999999999864             356778888999999886


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +|++|||++|.||+++|+++.+.+.+.
T Consensus       155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          155 KYLECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence            699999999999999999999988644

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=5.5e-26  Score=208.39  Aligned_cols=166  Identities=24%  Similarity=0.345  Sum_probs=144.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++.++ ...+.+   ++..+.+.+|||+|++. ..++..+++.+|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d  100 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI---DDEVVSMEILDTAGQED-TIQREGHMRWGE  100 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE---CCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence            3468999999999999999999999888888888888665 344555   78889999999999988 777888999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc-
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL-  395 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~-  395 (452)
                      ++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ +++..+++.+++..+++. |++|||++|. 
T Consensus       101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~g~~  176 (196)
T 2atv_A          101 GFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEG  176 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhh---CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECCCcCCc
Confidence            9999999999999999999998887652   345799999999999987 678889999999998875 9999999999 


Q ss_pred             cHHHHHHHHHHHHHHhh
Q psy14768        396 MIEDSMNFLVDRIICSK  412 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~  412 (452)
                      ||+++|+++++.+.+.+
T Consensus       177 gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          177 NITEIFYELCREVRRRR  193 (196)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhc
Confidence            99999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.93  E-value=4.7e-26  Score=212.31  Aligned_cols=166  Identities=24%  Similarity=0.476  Sum_probs=124.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.++++..+ ...+.+   ++..+.+.||||+|++.|..++..+++++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  107 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV---KGKPVHLHIWDTAGQDDYDRLRPLFYPDAS  107 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE---TTEEEEEEEEEC---------------CEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE---CCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence            3468999999999999999999999888877778876554 344555   788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-------------cccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-------------QVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-------------~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+.+. .|+..+...     ..++|++||+||+|+.+.             .+..+++.++++.+++
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  182 (214)
T 2j1l_A          108 VLLLCFDVTSPNSFDNIFNRWYPEVNHF-----CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA  182 (214)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC
Confidence            999999999999999996 698888775     256999999999999751             5677888999999998


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      .+|++|||++|.||+++|+++++.+.+.+
T Consensus       183 ~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          183 VAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             SEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            66999999999999999999999988654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.93  E-value=4.2e-26  Score=212.55  Aligned_cols=169  Identities=26%  Similarity=0.479  Sum_probs=144.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+|+|+++.+...+.++.+.+.....+..  .++..+.+.||||+|++.+..++..++..+|
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD--DQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEB--TTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEe--CCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            34689999999999999999999998888777888887766665544  1344488999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||++++.+++++..|+..+...    ...++|++||+||+|+.+ +.+..+++..++...++. |++|||++|.|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~g  161 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAV----VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEISAKTAHN  161 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEBTTTTBT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEecCCCCC
Confidence            999999999999999999999999877    345689999999999987 578888888888888876 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy14768        397 IEDSMNFLVDRIICSKR  413 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~  413 (452)
                      |+++|+++++.+.+...
T Consensus       162 v~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          162 FGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TTHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999876654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.93  E-value=1.1e-25  Score=207.46  Aligned_cols=163  Identities=22%  Similarity=0.414  Sum_probs=143.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|+|||||++++.++.+...+.++++.++.. .+.+   ++..+.+.||||+|+++|..++..+++++|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEV---DGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEE---TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEE---CCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            46899999999999999999999988888888888887753 3555   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|+|||++++.+|+.+ ..|...+...     ..++|++||+||+|+.+             +.+..+++.++++.++..
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  174 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF  174 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence            9999999999999999 6788888765     24699999999999975             236778889999999986


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      .|+++||++|.||+++|+++++.+++
T Consensus       175 ~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          175 GYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            69999999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.93  E-value=1.7e-25  Score=203.57  Aligned_cols=167  Identities=28%  Similarity=0.539  Sum_probs=135.3

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|||||||+++|+++.+...+.++++..+ ...+..   ++..+.+.||||+|+++|..++..+++.+|+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEE---CCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            458999999999999999999998888777777776554 345555   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||+++..+++++..|+..+....   ...++|++||+||+|+.++.+..++++++++.+++. ++++||+++.|++
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  171 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSAKTRQGVE  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            999999999999999999998887652   235699999999999987677888999999999986 9999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy14768        399 DSMNFLVDRIICSKR  413 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~  413 (452)
                      ++|+++++.+.+.+.
T Consensus       172 ~l~~~l~~~~~~~~~  186 (190)
T 3con_A          172 DAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999876543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.93  E-value=2.9e-25  Score=195.92  Aligned_cols=163  Identities=29%  Similarity=0.516  Sum_probs=142.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||+++++++.+...+.++++..+ ...+..   ++..+.+.+|||+|++++..++..++..+|++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   78 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   78 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE---TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE---CCEEEEEEEEECCCchhhhHHHHHhhccCCEE
Confidence            47899999999999999999999888777777776544 444555   77889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      ++|||+++..+++.+..|+..+....   ...++|+++|+||+|+.++....+++.++++.+++. ++++||++|.|+++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  154 (166)
T 2ce2_X           79 LCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVED  154 (166)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEECTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Confidence            99999999999999999998887752   234799999999999987667788999999999986 99999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        400 SMNFLVDRIIC  410 (452)
Q Consensus       400 lf~~i~~~i~~  410 (452)
                      +|+++.+.+.+
T Consensus       155 l~~~l~~~~~~  165 (166)
T 2ce2_X          155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=9e-26  Score=208.85  Aligned_cols=162  Identities=24%  Similarity=0.408  Sum_probs=139.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|||||||+++|+++.+...+.++++. .....+.+   ++..+.+.||||+|++.|..++..+++++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMV---DGKPVNLGLWDTAGLEDYDRLRPLSYPQTD  103 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEEC---C-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEE---CCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            34689999999999999999999998888888888764 44455555   788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+.+. .|+..+...     ..++|++||+||+|+.+ .            .+..+++..+++.+++
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  178 (204)
T 4gzl_A          104 VFLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA  178 (204)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence            999999999999999997 788888876     26799999999999865 2            2678889999999998


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      .+|++|||++|.||+++|+++.+.+
T Consensus       179 ~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          179 VKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            8899999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=1.5e-26  Score=208.43  Aligned_cols=162  Identities=28%  Similarity=0.459  Sum_probs=126.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.+|++..+. ..+..   ++..+.+.+|||+|+++|..++..+++++|+
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVV---NGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC----------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEE---CCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            4689999999999999999999988888788788775543 22333   6677889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc----------ccHHHHHHHHHHcCCCEE
Q psy14768        319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ----------VEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~----------~~~e~~~~~~~~~~~~~~  386 (452)
                      +|+|||++++.+|+.+. .|+..+...     ..++|++||+||+|+.+ +.          +..+++.+++..++..+|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHY-----APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY  157 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence            99999999999999997 698888875     24799999999999865 22          467888999999998669


Q ss_pred             EEecCCCCccHHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ++|||++|.||+++|+++++.+.
T Consensus       158 ~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          158 IECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.9e-25  Score=206.81  Aligned_cols=165  Identities=22%  Similarity=0.418  Sum_probs=137.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|||||||+++|+++.+...+.++++.++... +..   ++..+.+.||||+|+++|..++..+++++|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEV---DGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEE---TTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEE---CCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence            357999999999999999999999888878888888766443 555   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|+|||++++.+|+.+ ..|+..+...     ..++|++||+||+|+.+             +.+..+++..++..++..
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  174 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHF-----CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY  174 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999 6788888765     25699999999999964             236677888999999886


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      .|++|||++|.||+++|+++++.+.+.+
T Consensus       175 ~~~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          175 DYLECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            7999999999999999999999887543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.93  E-value=3.7e-26  Score=208.34  Aligned_cols=166  Identities=17%  Similarity=0.247  Sum_probs=134.5

Q ss_pred             CCcccEEEeeecccCCcceeeecccccccccc-----------CCcceeeeEEEEE-EeeecCCeeEEEEEEecCCcchh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNY-----------KNTVGVDFSTKLL-SHKKYGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~-----------~~t~~~d~~~~~i-~~~~~~~~~~~l~l~DtaG~e~~  305 (452)
                      ...+||+++|.+|||||||++. +.+.+...+           .+|++.++....+ .+   ++..+.+.||||+|+++|
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV---KGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS---SSCEEEEEEEECCSCCSC
T ss_pred             ccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccc---cCCceEEEEEeCCChHHH
Confidence            3468999999999999999954 444444443           3455555544433 33   677899999999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLT------NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH  379 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t------~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~  379 (452)
                      ..++..+++++|++|+|||++      +..+|+.+..|+..+..     ...++|++||+||+|+.+ .+..++++++++
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~  161 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPD-ALPVEMVRAVVD  161 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTT-CCCHHHHHHHHC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhccc-ccCHHHHHHHHH
Confidence            999999999999999999999      45677777777776632     346799999999999975 577889999999


Q ss_pred             HcCCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       380 ~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ..++.+|+++||++|.||+++|+++++.+.+...
T Consensus       162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            9998449999999999999999999999887654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.93  E-value=8.4e-26  Score=211.26  Aligned_cols=167  Identities=26%  Similarity=0.545  Sum_probs=146.2

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ....+||+++|.+|||||||+++|+.+.+...+.++.+.++....+..   ++..+.+.||||+|++.|..++..+++++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT---NRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE---TTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            345689999999999999999999988888888889888888888777   88899999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      |++|+|||++++.+|+.+..|+..+...     ..++|++||+||+|+.+..... +...++...++. |++|||++|.|
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~~~Sa~~~~g  161 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQ-YYDISAKSNYN  161 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHH-----STTCCEEEEEECTTSSSCSSCG-GGCCHHHHHTCE-EEECBGGGTBT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECCccccccccH-HHHHHHHHcCCE-EEEEeCCCCCC
Confidence            9999999999999999999999999876     2479999999999998633322 556677777775 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy14768        397 IEDSMNFLVDRIICSKR  413 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~  413 (452)
                      |+++|+++.+.+.....
T Consensus       162 i~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             TTHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999999876643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.2e-25  Score=200.06  Aligned_cols=163  Identities=25%  Similarity=0.406  Sum_probs=138.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|.+|+|||||+++++++.+...+.++++..+. ..+..   ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   78 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISC---DKSICTLQITDTTGSHQFPAMQRLSISKGHAF   78 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEE---TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEE---CCEEEEEEEEECCCchhhHHHHHHhcccCCEE
Confidence            589999999999999999999998887777787775553 33444   77888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+++.+..|+..+.....  ...++|++||+||+|+.+ +++..++...++...++. |+++||++|.|++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  155 (172)
T 2erx_A           79 ILVYSITSRQSLEELKPIYEQICEIKG--DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVK  155 (172)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEecCCCCcCHH
Confidence            999999999999999988887776521  124689999999999976 667788888898888875 9999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        399 DSMNFLVDRII  409 (452)
Q Consensus       399 ~lf~~i~~~i~  409 (452)
                      ++|+++.+.+.
T Consensus       156 ~l~~~l~~~~~  166 (172)
T 2erx_A          156 ELFQELLNLEK  166 (172)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=8e-25  Score=200.23  Aligned_cols=168  Identities=16%  Similarity=0.264  Sum_probs=128.8

Q ss_pred             CCCcccEEEeeecccCCcceeeecccccccc-ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcC
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQN  315 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~-~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~  315 (452)
                      .....+|+++|.+|||||||+++|++..+.. .+.+|++.....  +     +...+.+.||||+|+++|..++..++++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F-----EKGRVAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E-----EETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E-----EeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence            4456899999999999999999999988887 778888844432  2     3356789999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhc----CCCCCcEEEEEECCCCCCCcccHHHHHHHH------HHcCCCE
Q psy14768        316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILD----NGAMLPCLLLASKCDLPDRQVEINEIEAVC------HQYNFMS  385 (452)
Q Consensus       316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~----~~~~~piilV~NK~Dl~~~~~~~e~~~~~~------~~~~~~~  385 (452)
                      +|++|+|||++++.+|+.+..|+..+.......    ...++|++||+||+|+.+.. ..+++.+..      +..++ .
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~-~  164 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTTLMGDHPF-V  164 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHHHHTTSCE-E
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchhhccCCee-E
Confidence            999999999999999999998888776542110    01369999999999997621 122222111      33444 5


Q ss_pred             EEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      |++|||++|.||+++|++|++.+.+...
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999886643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.91  E-value=2.3e-25  Score=202.46  Aligned_cols=168  Identities=17%  Similarity=0.370  Sum_probs=124.4

Q ss_pred             cccEEEeeecccCCcceeeecccc--ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~--~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      .+||+++|++|||||||+++|++.  .+...+.+|++.++....+.+...++..+.+.+|||+|+++|..++..+++.+|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999984  566667888888887665543111235678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc---HHHHHHHHHHcCCC---EEEEe
Q psy14768        318 GCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE---INEIEAVCHQYNFM---SWIEV  389 (452)
Q Consensus       318 ~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~---~e~~~~~~~~~~~~---~~~ev  389 (452)
                      ++++|||++++ .+|+.+..|+..+...     ..+.|++||+||+|+.+ +.+.   .+..+.+++.+++.   .|+++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-----ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFV  156 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH-----CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh-----CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence            99999999997 5899999999988765     24689999999999976 2221   33445666666665   38999


Q ss_pred             cCCCCc-cHHHHHHHHHHHHHHhh
Q psy14768        390 SSKEHL-MIEDSMNFLVDRIICSK  412 (452)
Q Consensus       390 SAktg~-nv~~lf~~i~~~i~~~~  412 (452)
                      ||+++. +++++++.+.+.+.+.+
T Consensus       157 Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          157 NATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             ecccCchhHHHHHHHHHHHHhccc
Confidence            999996 99999999988876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.91  E-value=1.8e-24  Score=199.30  Aligned_cols=157  Identities=15%  Similarity=0.216  Sum_probs=121.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|++|||||||++++.++.+. .+.+|++.+.  ..+.+   ++  +.+.+|||+|++.|+.++..+++.+|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~---~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~   95 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTI---AG--MTFTTFDLGGHIQARRVWKNYLPAING   95 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEE---TT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEE---CC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence            4579999999999999999999987764 4567766554  34444   44  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----------------C
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----------------N  382 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----------------~  382 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ .+..+++.+++...                .
T Consensus        96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (198)
T 1f6b_A           96 IVFLVDCADHERLLESKEELDSLMTDE---TIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNAR  171 (198)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCc
Confidence            999999999999999999988876541   235699999999999975 56677777776532                2


Q ss_pred             CCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      ...|++|||++|.||+++|+++.+.
T Consensus       172 ~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          172 PLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHHh
Confidence            3458999999999999999999764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.91  E-value=3.3e-25  Score=196.30  Aligned_cols=157  Identities=20%  Similarity=0.323  Sum_probs=121.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++++++.+.. +.+|++..  ...+..     ..+.+.+|||+|+++|..++..+++++|++|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   72 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   72 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC-----SSCEEEEEECCCCGGGHHHHHHHTTTCSEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE-----CCEEEEEEEcCCChhhHHHHHHHhccCCEEE
Confidence            589999999999999999999877653 56777633  333333     4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCCCCc
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSKEHL  395 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAktg~  395 (452)
                      +|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++.....     ..++ ++++|||++|.
T Consensus        73 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  147 (164)
T 1r8s_A           73 FVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRHRNW-YIQATCATSGD  147 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCCE-EEEECBTTTTB
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhch---hhcCCeEEEEEECcCCcCC-CCHHHHHHHhCcccccCccE-EEEEcccCCCc
Confidence            9999999999999988888776531   2356999999999999752 22222222211     1122 48999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRIIC  410 (452)
Q Consensus       396 nv~~lf~~i~~~i~~  410 (452)
                      ||+++|+++++.+.+
T Consensus       148 gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          148 GLYEGLDWLSNQLRN  162 (164)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.4e-24  Score=195.29  Aligned_cols=162  Identities=19%  Similarity=0.282  Sum_probs=128.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNS  316 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~a  316 (452)
                      ...++|+++|.+|+|||||+++|++.. +...+.+|++.  ....+.+   +  .+.+.+|||+|++++..++..+++++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~---~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKS---S--SLSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEEC---S--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEE---C--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence            346899999999999999999999877 56667777763  3344444   3  47899999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC--CCCcEEEEEECCCCCCCcccHHHHHHHHH--HcC--CCEEEEec
Q psy14768        317 DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG--AMLPCLLLASKCDLPDRQVEINEIEAVCH--QYN--FMSWIEVS  390 (452)
Q Consensus       317 d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~--~~~piilV~NK~Dl~~~~~~~e~~~~~~~--~~~--~~~~~evS  390 (452)
                      |++|+|||++++.+|+.+..|+..+....   ..  .++|++||+||+|+.+ ....+++.++..  .+.  ...+++||
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S  167 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHP---DIKHRRIPILFFANKMDLRD-AVTSVKVSQLLCLENIKDKPWHICASD  167 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHST---TTTTSCCCEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCh---hhccCCCeEEEEEeCcCccc-CCCHHHHHHHhChhhccCCceEEEEcc
Confidence            99999999999999999988888876642   11  5799999999999975 344556666553  211  23589999


Q ss_pred             CCCCccHHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~  410 (452)
                      |++|.||+++|++|.+.+.+
T Consensus       168 a~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          168 AIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999987754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.91  E-value=4.7e-24  Score=195.00  Aligned_cols=158  Identities=16%  Similarity=0.224  Sum_probs=126.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|++|||||||++++.++.+. .+.+|.+.+  ...+.+   ++  +.+.+|||+|++.+..++..+++++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~---~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAI---GN--IKFTTFDLGGHIQARRLWKDYFPEVN   92 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEE---TT--EEEEEEECCCSGGGTTSGGGGCTTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEE---CC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34579999999999999999999987764 455666654  334444   44  78999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc-----------CCCEE
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY-----------NFMSW  386 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~-----------~~~~~  386 (452)
                      ++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ .+..+++.+++...           ...+|
T Consensus        93 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B           93 GIVFLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHcch---hhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEE
Confidence            9999999999999999999888876541   235699999999999975 55666666655432           23358


Q ss_pred             EEecCCCCccHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~  407 (452)
                      ++|||++|.||+++|+++.+.
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEeECCcCCCHHHHHHHHHhh
Confidence            999999999999999998753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.91  E-value=1.8e-24  Score=192.57  Aligned_cols=159  Identities=19%  Similarity=0.288  Sum_probs=125.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||++++.++.+. .+.+|++...  ..+.+   +  .+.+.+|||+|++.+..++..+++++|+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~---~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   77 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTY---K--NLKFQVWDLGGLTSIRPYWRCYYSNTDA   77 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEE---T--TEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEE---C--CEEEEEEECCCChhhhHHHHHHhccCCE
Confidence            4589999999999999999999987764 4567766443  34444   3  5789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAkt  393 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++....     ...++ +|+++||++
T Consensus        78 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  152 (171)
T 1upt_A           78 VIYVVDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQA-MTSSEMANSLGLPALKDRKW-QIFKTSATK  152 (171)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHHTGGGCTTSCE-EEEECCTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhch---hhCCCEEEEEEECCCCcCC-CCHHHHHHHhCchhccCCce-EEEECcCCC
Confidence            999999999999999988887775431   2256999999999999752 1222222222     22233 589999999


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~  410 (452)
                      |.|++++|+++++.+.+
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          153 GTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.91  E-value=1.2e-23  Score=193.44  Aligned_cols=164  Identities=29%  Similarity=0.599  Sum_probs=144.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .++|+++|++|+|||||++++++..+...+.++++.++....+.+   ++..+.+.+|||+|++++..++..+++.+|++
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~---~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE---TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE---CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            589999999999999999999998888888899888888888877   88889999999999999998888999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..+|+++..|+..+...    .....|+++|+||+|+.+ +.+..+++..++...++. ++++||+++.+++
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~~d~Sal~~~~i~  156 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVE  156 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCe-EEEEeCCCCCCHH
Confidence            9999999999999998898877654    345689999999999976 667778899999998876 8999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14768        399 DSMNFLVDRIICS  411 (452)
Q Consensus       399 ~lf~~i~~~i~~~  411 (452)
                      ++|+++.+.+.+.
T Consensus       157 ~l~~~l~~~~~~~  169 (199)
T 2f9l_A          157 EAFKNILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=2.4e-24  Score=196.21  Aligned_cols=161  Identities=23%  Similarity=0.370  Sum_probs=127.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+.+|++.++..  +     ....+.+.||||+|+++|..++..+++++|+
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I-----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E-----EETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E-----EeCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            46899999999999999999999988887888888877643  2     2346789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH----cCCCEEEEecCCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ----YNFMSWIEVSSKEH  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~----~~~~~~~evSAktg  394 (452)
                      +|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++.+....    .....+++|||++|
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  169 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRDLPGA-LDEKELIEKMNLSAIQDREICCYSISCKEK  169 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCCEEEEEECCCCccC-CCHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence            999999999999999988888775531   2356999999999999752 222222222111    01234899999999


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDRIIC  410 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~  410 (452)
                      .||+++|+++++.+..
T Consensus       170 ~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          170 DNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TTHHHHHHHHHHTCC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=8.5e-24  Score=191.63  Aligned_cols=160  Identities=25%  Similarity=0.380  Sum_probs=127.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++. ...+.+|++...  ..+.+   +  .+.+.+|||+|++++..++..+++++|+
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~---~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   88 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEH---R--GFKLNIWDVGGQKSLRSYWRNYFESTDG   88 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEE---T--TEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence            46899999999999999999999877 667778877443  34444   3  5789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAkt  393 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++.+...     ..++ +++++||++
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  163 (186)
T 1ksh_A           89 LIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGA-LSCNAIQEALELDSIRSHHW-RIQGCSAVT  163 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCE-EEEECCTTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhCh---hcCCCcEEEEEeCccCCCC-CCHHHHHHHhChhhccCCce-EEEEeeCCC
Confidence            999999999999999988887776541   2356999999999999752 23333333322     1223 589999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy14768        394 HLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~  411 (452)
                      |.|++++|+++.+.+.+.
T Consensus       164 ~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999887643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=7.8e-24  Score=192.39  Aligned_cols=160  Identities=18%  Similarity=0.282  Sum_probs=124.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|||||||+++++++.+. .+.+|++...  ..+.+   +  .+.+.+|||+|++++..++..+++++|+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~---~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   86 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVI---N--NTRFLMWDIGGQESLRSSWNTYYTNTEF   86 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEE---T--TEEEEEEECCC----CGGGHHHHTTCCE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence            4689999999999999999999987776 6667777443  33334   3  4789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAkt  393 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ ....+++.+....     .++ .+++|||++
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~  161 (187)
T 1zj6_A           87 VIVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQW-HIQACCALT  161 (187)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCE-EEEECBTTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhch---hhCCCeEEEEEECCCCcC-CCCHHHHHHHhChhhhcCCCc-EEEEccCCC
Confidence            999999999999999999988886541   235699999999999975 3334455444432     233 589999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy14768        394 HLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~  411 (452)
                      |.||+++|+++++.+...
T Consensus       162 g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC-
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999877543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.90  E-value=6.5e-24  Score=192.46  Aligned_cols=160  Identities=25%  Similarity=0.334  Sum_probs=123.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|++|||||||++++.++.+ ..+.+|++..  ...+.+   +  .+.+.+|||+|++.|..++..+++.+|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~---~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~   85 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQS---Q--GFKLNVWDIGGQRKIRPYWRSYFENTD   85 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEE---T--TEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEE---C--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            4568999999999999999999998754 3455666643  333444   3  578999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAk  392 (452)
                      ++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++.+...     ..+ ..|++|||+
T Consensus        86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  160 (181)
T 1fzq_A           86 ILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTA-APASEIAEGLNLHTIRDRV-WQIQSCSAL  160 (181)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccC-CCHHHHHHHhCchhccCCc-eEEEEccCC
Confidence            9999999999999999988887765431   2356999999999999752 22233322221     112 248999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~  410 (452)
                      +|.||+++|+++++.+.+
T Consensus       161 ~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          161 TGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             TCTTHHHHHHHHHHTC--
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.84  E-value=7.6e-26  Score=208.77  Aligned_cols=162  Identities=25%  Similarity=0.442  Sum_probs=137.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+...+.++++..+ ...+..   ++..+.+.+|||+|+++|..++..+++++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTD  103 (204)
Confidence            3468999999999999999999999888877777776554 344444   677788999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C------------cccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R------------QVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~------------~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||++++.+|+++. .|+..+...     ..++|++||+||+|+.+ .            .+..+++.++++.+++
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  178 (204)
T 3th5_A          104 VFLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA  178 (204)
Confidence            999999999999999997 788877765     23699999999999975 2            4556777888888887


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      .+|++|||++|.||+++|+++++.+
T Consensus       179 ~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          179 VKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            5599999999999999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.90  E-value=1.7e-24  Score=198.27  Aligned_cols=159  Identities=18%  Similarity=0.310  Sum_probs=119.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|++|||||||+++++++.+. .+.+|++..  ...+..     ..+.+.+|||+|+++|..++..+++++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY-----KNICFTVWDVGGQDKIRPLWRHYFQNTQ   98 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE-----TTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE-----CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            34689999999999999999999987765 345666633  333333     4578999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH-----HcCCCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH-----QYNFMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~-----~~~~~~~~evSAk  392 (452)
                      ++|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++.+...     ..+ .++++|||+
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~-~~~~~~SA~  173 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQED---ELRDAVLLVFANKQDMPNA-MPVSELTDKLGLQHLRSRT-WYVQATCAT  173 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCC-EEEEECBTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhccc---ccCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCc-eEEEECcCC
Confidence            9999999999999999998888776531   2356999999999999752 22222222211     112 248999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRII  409 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~  409 (452)
                      +|.||+++|+++++.+.
T Consensus       174 ~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          174 QGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTBTHHHHHHHHHHHTT
T ss_pred             CcCCHHHHHHHHHHHHh
Confidence            99999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.90  E-value=1.1e-23  Score=190.52  Aligned_cols=157  Identities=18%  Similarity=0.273  Sum_probs=124.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|+++.+ ..+.++++....  .+.+   +  .+.+.+|||+|+++|..++..+++++|
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~---~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVI---N--NTRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEE---T--TEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEE---C--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3468999999999999999999998877 556677775543  3333   3  378999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----cCCCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----YNFMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----~~~~~~~evSAk  392 (452)
                      ++|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+ ....+++.+....     .++ .+++|||+
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~  165 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQW-HIQACCAL  165 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTT-CCCHHHHHHHTTGGGCCSSCE-EEEECBTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhCh---hhCCCeEEEEEECCCccc-CCCHHHHHHHhCcccccCCce-EEEEccCC
Confidence            9999999999999999988888776531   235699999999999975 2334444443321     222 58999999


Q ss_pred             CCccHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDR  407 (452)
Q Consensus       393 tg~nv~~lf~~i~~~  407 (452)
                      +|.||+++|+++++.
T Consensus       166 ~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          166 TGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTBTHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHhh
Confidence            999999999999754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.90  E-value=1.7e-23  Score=206.95  Aligned_cols=163  Identities=24%  Similarity=0.449  Sum_probs=143.1

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++++++.+...+.++++..+ ...+..   ++..+.+.+|||+|++.|..++..+++++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  229 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV---DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  229 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEE---TTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEE---CCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence            458999999999999999999998888888888887555 445555   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|+|||++++.+|+++. .|+..+...     ..++|++||+||+|+.+             +.+..+++.++++..++.
T Consensus       230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  304 (332)
T 2wkq_A          230 FLICFSLVSPASFHHVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  304 (332)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhh-----CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCc
Confidence            99999999999999997 688888775     23799999999999854             357788899999999986


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +|++|||++|.||+++|+.+++.+.+
T Consensus       305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          305 KYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            69999999999999999999988764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.2e-23  Score=189.69  Aligned_cols=161  Identities=23%  Similarity=0.304  Sum_probs=124.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|++|||||||+++++++.+ ..+.++++...  ..+.+   +  .+.+.+|||+|++.+..++..+++++|+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~---~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSY---K--NLKLNVWDLGGQTSIRPYWRCYYADTAA   88 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEE---T--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            468999999999999999999998777 56667777443  33434   3  4789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC----CCEEEEecCCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN----FMSWIEVSSKEH  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~----~~~~~evSAktg  394 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+ ....+++.+......    ..+++++||++|
T Consensus        89 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~  164 (183)
T 1moz_A           89 VIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPG-ALSASEVSKELNLVELKDRSWSIVASSAIKG  164 (183)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTT-CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCC-CCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            999999999999999998888776541   246799999999999975 233444444332211    125899999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy14768        395 LMIEDSMNFLVDRIICS  411 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~  411 (452)
                      .||+++|+++.+.+.+.
T Consensus       165 ~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          165 EGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            99999999999988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.90  E-value=4.3e-23  Score=188.86  Aligned_cols=162  Identities=28%  Similarity=0.595  Sum_probs=145.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++++++|++|||||||++++++..+...+.++++.++....+.+   ++..+.+.+|||+|++++..++..+++.+++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~---~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE---TTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE---CCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            3589999999999999999999998888888899999988888888   8888899999999999999888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +++|||+++..+|+++..|+..+...    .....|+++|+||+|+.+ +.+..+++..++...++. ++++||+++.++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~-~ld~Sald~~~v  179 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNV  179 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeCCCCCCH
Confidence            99999999999999998888877654    345689999999999976 667788899999998876 899999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRI  408 (452)
Q Consensus       398 ~~lf~~i~~~i  408 (452)
                      +++|+.+.+.+
T Consensus       180 ~~l~~~l~~~i  190 (191)
T 1oix_A          180 EAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.90  E-value=4.4e-24  Score=194.20  Aligned_cols=160  Identities=24%  Similarity=0.328  Sum_probs=125.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|++|+|||||++++.++.+. .+.+|++...  ..+..   +  .+.+.+|||+|++++..++..+++++|+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~---~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   92 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL--ETLQY---K--NISFEVWDLGGQTGVRPYWRCYFSDTDA   92 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE--EEEEE---T--TEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE--EEEEE---C--CEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence            4689999999999999999999987765 3567776433  33434   3  5789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKE  393 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAkt  393 (452)
                      +|+|||++++.+|+.+..|+..+....   ...++|++||+||+|+.+. ...+++.+..     ...++ ++++|||++
T Consensus        93 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  167 (189)
T 2x77_A           93 VIYVVDSTDRDRMGVAKHELYALLDED---ELRKSLLLIFANKQDLPDA-ASEAEIAEQLGVSSIMNRTW-TIVKSSSKT  167 (189)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCS---TTTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCE-EEEECCTTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhh---hcCCCeEEEEEECCCCcCC-CCHHHHHHHhChhhccCCce-EEEEccCCC
Confidence            999999999999999988887775531   2357999999999999752 1222222221     11233 589999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy14768        394 HLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~  411 (452)
                      |.||+++|+++.+.+.+.
T Consensus       168 ~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.90  E-value=5.1e-24  Score=195.50  Aligned_cols=162  Identities=15%  Similarity=0.213  Sum_probs=120.4

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh---hhhh
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS---RVYY  313 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~---~~~i  313 (452)
                      ....+||+++|.+|||||||++++.+. +...  ++.+.++....+.....++..+.+.||||+|+++|..+.   ..++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            345799999999999999999977653 3322  344443333222221113567889999999999988776   8999


Q ss_pred             cCCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccHHHHHHHHH----
Q psy14768        314 QNSDGCIIMFDLTNR--KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEINEIEAVCH----  379 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~--~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~e~~~~~~~----  379 (452)
                      +++|++|+|||+++.  .+++.+..|+..+...     ..++|++||+||+|+.+        +.+..++.+++++    
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            999999999999997  5666666677666433     35799999999999864        3455556677777    


Q ss_pred             HcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        380 QYNFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       380 ~~~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      .+++. |++|||++ .||+++|+.+++.+
T Consensus       169 ~~~~~-~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLS-FYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEE-EEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcc-eEEEEech-hhHHHHHHHHHHHh
Confidence            45554 99999999 99999999998865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.89  E-value=3.6e-23  Score=185.61  Aligned_cols=161  Identities=14%  Similarity=0.192  Sum_probs=124.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...++|+++|.+|+|||||+++|++..+...+.++++.++....+.+   ++  ..+.+|||+|++.|..++..++..+|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   80 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV---ND--KKITFLDTPGHEAFTTMRARGAQVTD   80 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE---TT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe---CC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence            45689999999999999999999998888887788877776666665   54  45779999999999999889999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC--------CEEEEe
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF--------MSWIEV  389 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~--------~~~~ev  389 (452)
                      ++|+|||++++...+....+ ..+.       ..++|++||+||+|+.+.  ..++..........        .+|++|
T Consensus        81 ~~i~v~d~~~~~~~~~~~~l-~~~~-------~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (178)
T 2lkc_A           81 IVILVVAADDGVMPQTVEAI-NHAK-------AANVPIIVAINKMDKPEA--NPDRVMQELMEYNLVPEEWGGDTIFCKL  150 (178)
T ss_dssp             EEEEEEETTCCCCHHHHHHH-HHHG-------GGSCCEEEEEETTTSSCS--CHHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred             EEEEEEECCCCCcHHHHHHH-HHHH-------hCCCCEEEEEECccCCcC--CHHHHHHHHHhcCcChhHcCCcccEEEE
Confidence            99999999985443333222 2221       235899999999999752  23334433333322        368999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ||++|.||+++|+++++.+...+.
T Consensus       151 Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          151 SAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             ecCCCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999999998876554

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.89  E-value=3.3e-24  Score=205.78  Aligned_cols=167  Identities=19%  Similarity=0.336  Sum_probs=126.8

Q ss_pred             CCCcccEEEeeec---------ccCCcceeeeccc---cccccccCCcc-eeeeEEEEEEe-----------eecCCeeE
Q psy14768        237 QIPTYPILITGDS---------TVGKTSYVQGFVQ---NKFLDNYKNTV-GVDFSTKLLSH-----------KKYGGRPV  292 (452)
Q Consensus       237 ~~~~~kI~ivG~~---------nvGKSSLin~l~~---~~~~~~~~~t~-~~d~~~~~i~~-----------~~~~~~~~  292 (452)
                      ....+||+++|.+         |||||||+++|++   +.+...+.+++ +.++....+.+           ...++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            3456899999999         9999999999998   66777777776 55544332211           00156778


Q ss_pred             EEEEEe-----------------------cCCcchhhhhhhhhhc---------------------CCCEEEEEEeCCCh
Q psy14768        293 KLQIWD-----------------------IAGQDRYICMSRVYYQ---------------------NSDGCIIMFDLTNR  328 (452)
Q Consensus       293 ~l~l~D-----------------------taG~e~~~~~~~~~i~---------------------~ad~vIlV~D~t~~  328 (452)
                      .+.|||                       ++|+++|..++..+++                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            899999                       7888888888887777                     79999999999998


Q ss_pred             --hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHc-CCCEEEEecCCCCccHHHHHHHH
Q psy14768        329 --KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQY-NFMSWIEVSSKEHLMIEDSMNFL  404 (452)
Q Consensus       329 --~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~-~~~~~~evSAktg~nv~~lf~~i  404 (452)
                        .+|+.+..|+..+....   ...++|++||+||+|+.+ +.+  +++++++... ++ +|++|||++|.||+++|+++
T Consensus       176 ~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNL-QVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHH---HHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHh---ccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHH
Confidence              99999999998886542   124699999999999975 333  5677777764 55 49999999999999999999


Q ss_pred             HHHHH
Q psy14768        405 VDRII  409 (452)
Q Consensus       405 ~~~i~  409 (452)
                      ++.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.88  E-value=2e-22  Score=189.51  Aligned_cols=171  Identities=13%  Similarity=0.149  Sum_probs=122.2

Q ss_pred             CCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc------ch--
Q psy14768        233 LSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ------DR--  304 (452)
Q Consensus       233 l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~------e~--  304 (452)
                      ++......++|+++|.+|||||||+|+|+++.+.....+.++.+.....+..     ....+.||||+|+      ++  
T Consensus        22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~DtpG~~~~~~~~~~~   96 (228)
T 2qu8_A           22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-----KLNKYQIIDTPGLLDRAFENRNT   96 (228)
T ss_dssp             CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-----TTEEEEEEECTTTTTSCGGGCCH
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-----CCCeEEEEECCCCcCcccchhhh
Confidence            3444456799999999999999999999998776555455555554444433     3467999999998      43  


Q ss_pred             --hhhhhhhhhcCCCEEEEEEeCCChhhHHH--HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHH---HHHH
Q psy14768        305 --YICMSRVYYQNSDGCIIMFDLTNRKSFES--VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEIN---EIEA  376 (452)
Q Consensus       305 --~~~~~~~~i~~ad~vIlV~D~t~~~S~~~--~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e---~~~~  376 (452)
                        +..+ ..++..+|++|+|||++++.+|+.  ...|+..+...     ..++|++||+||+|+.+ +++..+   ....
T Consensus        97 ~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  170 (228)
T 2qu8_A           97 IEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ  170 (228)
T ss_dssp             HHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred             HHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccCCchhhHHHHHHHHHH
Confidence              2222 345788999999999999988752  23455555442     24699999999999976 444443   4566


Q ss_pred             HHHHcC-CCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        377 VCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       377 ~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      ++...+ ...|++|||++|.||+++|+++++.+.+.+..
T Consensus       171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          171 ILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             HHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            666665 13599999999999999999999999876653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.88  E-value=3.9e-23  Score=184.31  Aligned_cols=152  Identities=18%  Similarity=0.232  Sum_probs=115.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVYY  313 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~i  313 (452)
                      .++|+++|++|||||||++++.+..+...+.++++.+.....+.+   ++  ..+.+|||+|++.|.      .+...++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NG--EKFKVVDLPGVYSLTANSIDEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE---TT--EEEEEEECCCCSCSSSSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE---CC--cEEEEEECCCcccCCCcchhHHHHHHHH
Confidence            478999999999999999999987776666677777766666655   43  578999999998775      3445566


Q ss_pred             c--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        314 Q--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       314 ~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      +  ++|++++|||+++..   ....|+..+...       ++|+++|+||+|+.+ +.+.. +.+++++.++.. |+++|
T Consensus        78 ~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~-~~~~S  145 (165)
T 2wji_A           78 INEKPDLVVNIVDATALE---RNLYLTLQLMEM-------GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVK-VVPLS  145 (165)
T ss_dssp             HHHCCSEEEEEEETTCHH---HHHHHHHHHHHT-------TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSC-EEECB
T ss_pred             hcCCCCEEEEEecCCchh---HhHHHHHHHHhc-------CCCEEEEEEchHhccccChhh-HHHHHHHHhCCC-EEEEE
Confidence            5  899999999998753   334566655432       489999999999865 33332 467788888876 99999


Q ss_pred             CCCCccHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i  408 (452)
                      |++|.||+++|+++.+.+
T Consensus       146 A~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          146 AAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGGTBSHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            999999999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.88  E-value=2e-22  Score=198.57  Aligned_cols=165  Identities=20%  Similarity=0.282  Sum_probs=131.4

Q ss_pred             cccEEEeeecccCCcceeeecccc--ccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-----hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN--KFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-----ICMSRV  311 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~--~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-----~~~~~~  311 (452)
                      .+||+++|++|||||||+++++++  .+. ..+.+|++.++.  .+.+   ++ .+.+.+|||+|++.|     ..++..
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~---~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~   76 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRF---LG-NMTLNLWDCGGQDVFMENYFTKQKDH   76 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEE---TT-TEEEEEEEECCSHHHHHHHHTTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEe---CC-ceEEEEEECCCcHHHhhhhhhhHHHH
Confidence            579999999999999999998875  332 234455555444  3333   34 688999999999988     677888


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---Cc----ccHHHHHHHHHHcCC-
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQ----VEINEIEAVCHQYNF-  383 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~----~~~e~~~~~~~~~~~-  383 (452)
                      +++++|++|+|||+++..+|+++..|...+.....  ...++|++||+||+|+.+   +.    +..+++.+++..+++ 
T Consensus        77 ~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~--~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           77 IFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK--YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             HHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999887666654321  135799999999999976   33    566888999999985 


Q ss_pred             -CEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        384 -MSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       384 -~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                       .+|++|||++ .++.++|..+++.+.....
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~~  184 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNMS  184 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence             6799999999 8999999999887665443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.87  E-value=3.1e-22  Score=185.75  Aligned_cols=161  Identities=14%  Similarity=0.184  Sum_probs=114.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe-eEEEEEEecCCcchhhh-hhhhhhcCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR-PVKLQIWDIAGQDRYIC-MSRVYYQNS  316 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~-~~~l~l~DtaG~e~~~~-~~~~~i~~a  316 (452)
                      ..++|+++|.+|+|||||+++|+++.+...+. +++.++..  +.+   ++. .+.+.||||+|+++|.. ++..+++.+
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKV---NNNRGNSLTLIDLPGHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EEC---SSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEe---cCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence            46899999999999999999999888776664 44445543  444   443 68899999999999987 788899999


Q ss_pred             CEEEEEEeCCChh-hHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccH---HHHHHHHH------------
Q psy14768        317 DGCIIMFDLTNRK-SFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEI---NEIEAVCH------------  379 (452)
Q Consensus       317 d~vIlV~D~t~~~-S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~---e~~~~~~~------------  379 (452)
                      |++|+|||+++.. ++..+.. |...+....  ....++|++||+||+|+.+.....   +.+.+...            
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~  157 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM--ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST  157 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH--TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh--hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence            9999999999853 4555544 444443320  123568999999999997621111   11221111            


Q ss_pred             ---------HcC-------------CCEEEEecCCCC------ccHHHHHHHHHHH
Q psy14768        380 ---------QYN-------------FMSWIEVSSKEH------LMIEDSMNFLVDR  407 (452)
Q Consensus       380 ---------~~~-------------~~~~~evSAktg------~nv~~lf~~i~~~  407 (452)
                               ..+             ...|++|||++|      .||+++|++|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                     111             345999999999      9999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.4e-22  Score=199.94  Aligned_cols=161  Identities=19%  Similarity=0.289  Sum_probs=119.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|||||||+++|.++.+.... +|++.++..  +.     ...+.+.||||+|++.|..++..+++.+|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~--~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  235 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET--VE-----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG  235 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEE--EE-----ETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEE--Ee-----cCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            4579999999999999999999988776543 666655433  32     245789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKEH  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAktg  394 (452)
                      +|+|||+++..+|+.+..|+..+....   ...++|++||+||+|+.+.. ..+++.......    ...+|++|||++|
T Consensus       236 vilV~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          236 LIFVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             EEEEEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            999999999999999988777665431   33579999999999997522 222222222111    1124899999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy14768        395 LMIEDSMNFLVDRIICS  411 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~  411 (452)
                      .||+++|++|++.+.+.
T Consensus       312 ~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          312 DGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTHHHHHHHHHHHHTC-
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            99999999999987643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.86  E-value=1.2e-22  Score=200.00  Aligned_cols=163  Identities=15%  Similarity=0.158  Sum_probs=122.3

Q ss_pred             cEEEeeecccCCcceeeeccccccc---cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh---hhhhhhcC
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC---MSRVYYQN  315 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~---~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~---~~~~~i~~  315 (452)
                      ||+++|+.|||||||++++.++.+.   ..+.+|++.++...       + ..+.++|||||||++|..   ++..||++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-------~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~   72 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-------S-TLIDLAVMELPGQLNYFEPSYDSERLFKS   72 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-------C-SSSCEEEEECCSCSSSCCCSHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-------c-cEEEEEEEECCCchhccchhhhhhhhccC
Confidence            6899999999999999887654332   23568888777542       2 347899999999999974   46889999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHH---HHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccHHHHHHHHHH----
Q psy14768        316 SDGCIIMFDLTNRKSFESVVQW---KHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEINEIEAVCHQ----  380 (452)
Q Consensus       316 ad~vIlV~D~t~~~S~~~~~~~---~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~e~~~~~~~~----  380 (452)
                      ++++|+|||+++. .++....|   +..+...     .+++|++|||||+|+.+        +++..++++++++.    
T Consensus        73 a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-----~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~  146 (331)
T 3r7w_B           73 VGALVYVIDSQDE-YINAITNLAMIIEYAYKV-----NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG  146 (331)
T ss_dssp             CSEEEEECCCSSC-TTHHHHHHHHHHHHHHHH-----CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred             CCEEEEEEECCch-HHHHHHHHHHHHHHHhhc-----CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence            9999999999998 44444444   3333332     35799999999999975        23556666777775    


Q ss_pred             cCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhhhHHHHh
Q psy14768        381 YNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE  420 (452)
Q Consensus       381 ~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~~~~~~~  420 (452)
                      +++ .|++|||++ .||.++|..+++.++......+....
T Consensus       147 ~~i-~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~  184 (331)
T 3r7w_B          147 VQV-SFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLD  184 (331)
T ss_dssp             CCE-EEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHT
T ss_pred             cCc-eEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444 499999997 59999999999988876555554433

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.86  E-value=5e-22  Score=180.02  Aligned_cols=159  Identities=16%  Similarity=0.198  Sum_probs=123.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-----------cchhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG-----------QDRYICMS  309 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG-----------~e~~~~~~  309 (452)
                      ++|+++|.+|||||||++++++..+...+.++++.+....  ..   .    .+.+|||+|           ++.+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~---~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   72 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EW---K----NHKIIDMPGFGFMMGLPKEVQERIKDEI   72 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EE---T----TEEEEECCCBSCCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ec---C----CEEEEECCCccccccCCHHHHHHHHHHH
Confidence            6899999999999999999999888877777776554433  22   2    578999999           77888888


Q ss_pred             hhhhcC-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH
Q psy14768        310 RVYYQN-SDGCIIMFDLTNRKSFESV-VQWKHD--------LDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH  379 (452)
Q Consensus       310 ~~~i~~-ad~vIlV~D~t~~~S~~~~-~~~~~~--------i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~  379 (452)
                      ..+++. ++++++|||+.+..+++.+ ..|...        +....   ...++|++||+||+|+.+..  .++.+++++
T Consensus        73 ~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~--~~~~~~~~~  147 (190)
T 2cxx_A           73 VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTIVAVNKLDKIKNV--QEVINFLAE  147 (190)
T ss_dssp             HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEEEEEECGGGCSCH--HHHHHHHHH
T ss_pred             HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH---HhcCCceEEEeehHhccCcH--HHHHHHHHH
Confidence            888887 8888888888888888877 556542        11111   22469999999999997522  667888888


Q ss_pred             HcCCC------EEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        380 QYNFM------SWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       380 ~~~~~------~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      .++..      .+++|||++|.||+++|+++++.+.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            88874      36999999999999999999998865443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=2.6e-21  Score=176.30  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=107.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYICM  308 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~~~  308 (452)
                      ..++|+++|.+|+|||||+|+++++.+...+.++.+..........   +.   .+.+|||+|          ++.|..+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---ND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            4689999999999999999999988766555555544333333333   33   488999999          7788888


Q ss_pred             hhhhhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc---C
Q psy14768        309 SRVYYQNS---DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY---N  382 (452)
Q Consensus       309 ~~~~i~~a---d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~---~  382 (452)
                      +..+++.+   |++|+|||++++.++.+...+ ..+..       .++|+++|+||+|+.+.........++.+.+   .
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQMY-EFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP  167 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH-HHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence            88888777   999999999999888875422 22222       3489999999999976221222223333322   3


Q ss_pred             CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ..+++++||++|.||+++|+++.+.+
T Consensus       168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          168 EDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCceEEEEccCCCCHHHHHHHHHHHh
Confidence            35699999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.85  E-value=8.4e-22  Score=178.57  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=124.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVY  312 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~  312 (452)
                      ..++|+++|++|||||||+++|++..+...+.++++.+.....+..   +  ...+.+|||+|++.+.      .++..+
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---N--GEKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---T--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe---C--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence            4589999999999999999999987776677788887777666665   4  4778999999998774      345556


Q ss_pred             hc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        313 YQ--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       313 i~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      +.  .+|++++|+|+++   ++....|+..+..       .++|++||+||+|+.+ +.+. ++.+++++.++.. ++++
T Consensus        81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~  148 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVK-VVPL  148 (188)
T ss_dssp             HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEEC
T ss_pred             HhccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCC-eEEE
Confidence            64  5999999999875   5566667766654       3589999999999865 3332 4567788888876 9999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHhh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ||+++.||+++|+++++.+....
T Consensus       149 Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          149 SAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             EecCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999886654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.85  E-value=1.2e-21  Score=172.53  Aligned_cols=151  Identities=16%  Similarity=0.159  Sum_probs=107.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch-------hhhhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR-------YICMSRVY  312 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-------~~~~~~~~  312 (452)
                      .+|+++|.+|+|||||++++.+..+. ....++++.+.....+..   ++  ..+.+|||+|++.       +...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   76 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET---DR--GRFLLVDTGGLWSGDKWEKKIQEKVDRA   76 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE---TT--EEEEEEECGGGCSSSSCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe---CC--ceEEEEECCCCCCccchHHHHHHHHHHH
Confidence            58999999999999999999986643 344456666666666655   44  4688999999886       34455678


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ++.+|++|+|||+++..++... .+...+..       .++|+++|+||+|+.+.   .+++.++. .+++.+|+++||+
T Consensus        77 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~p~ilv~nK~Dl~~~---~~~~~~~~-~~~~~~~~~~Sa~  144 (161)
T 2dyk_A           77 LEDAEVVLFAVDGRAELTQADY-EVAEYLRR-------KGKPVILVATKVDDPKH---ELYLGPLY-GLGFGDPIPTSSE  144 (161)
T ss_dssp             TTTCSEEEEEEESSSCCCHHHH-HHHHHHHH-------HTCCEEEEEECCCSGGG---GGGCGGGG-GGSSCSCEECBTT
T ss_pred             HHhCCEEEEEEECCCcccHhHH-HHHHHHHh-------cCCCEEEEEECcccccc---hHhHHHHH-hCCCCCeEEEecc
Confidence            8999999999999987655432 12222222       24899999999999752   23344455 6677459999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRI  408 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i  408 (452)
                      +|.|++++|+++++.+
T Consensus       145 ~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          145 HARGLEELLEAIWERL  160 (161)
T ss_dssp             TTBSHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHHHHhC
Confidence            9999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.85  E-value=7e-22  Score=177.74  Aligned_cols=154  Identities=17%  Similarity=0.206  Sum_probs=114.1

Q ss_pred             cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------h--hh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------M--SR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~--~~  310 (452)
                      .++|+++|++|+|||||+|++.+..+ .....++++.++....+.+   ++  ..+.+|||+|++++..      +  ..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI---DG--MPLHIIDTAGLREASDEVERIGIERAW   78 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE---TT--EEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE---CC--eEEEEEECCCcccchhHHHHHHHHHHH
Confidence            47899999999999999999998653 3444567777777777766   55  4578999999875321      1  12


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      .+++.+|++|+|||+++..+++. ..|+..+...    ...++|++||+||+|+.+...      .++.. ...+|++||
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~----~~~~~p~ilv~NK~Dl~~~~~------~~~~~-~~~~~~~~S  146 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR----LPAKLPITVVRNKADITGETL------GMSEV-NGHALIRLS  146 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH----SCTTCCEEEEEECHHHHCCCC------EEEEE-TTEEEEECC
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh----cccCCCEEEEEECccCCcchh------hhhhc-cCCceEEEe
Confidence            46899999999999999988874 4566666654    345699999999999854110      01111 234589999


Q ss_pred             CCCCccHHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~  410 (452)
                      |++|.||+++|+++.+.+..
T Consensus       147 A~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          147 ARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTTCTTHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHhhh
Confidence            99999999999999887643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.84  E-value=7.5e-21  Score=187.45  Aligned_cols=162  Identities=11%  Similarity=0.108  Sum_probs=130.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----------
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----------  306 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----------  306 (452)
                      .....|+++|.+|||||||+|+|++..+. ....++++.+........   + ...++.||||+|+..+.          
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~---~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI---P-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---T-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec---C-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            44578999999999999999999997654 344555665554444433   2 25789999999985433          


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC-CCcccHHHHHHHHHHcC-CC
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-DRQVEINEIEAVCHQYN-FM  384 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~e~~~~~~~~~~-~~  384 (452)
                      .....+++.+|++|+|+|++++.++++...|+..+...       ++|+++|+||+|+. +.....+....+.+.++ +.
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~  156 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELT  156 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCC
Confidence            45567899999999999999999999988888777654       48999999999998 46667778888888884 55


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +++++||++|.|++++|+++.+.+.+
T Consensus       157 ~i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          157 EIVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            69999999999999999999987754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.84  E-value=1.1e-20  Score=171.73  Aligned_cols=157  Identities=18%  Similarity=0.200  Sum_probs=114.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYIC  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~~  307 (452)
                      ...++|+++|.+|+|||||+|++++..+ ....++.+..........   +   ..+.+|||+|          ++.+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~---~---~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLV---N---SKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEE---T---TTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEE---C---CcEEEEECCCCccccCChhhHHHHHH
Confidence            3468999999999999999999998763 233344433332222222   2   2477999999          677888


Q ss_pred             hhhhhhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHc
Q psy14768        308 MSRVYYQNS---DGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQY  381 (452)
Q Consensus       308 ~~~~~i~~a---d~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~  381 (452)
                      ++..+++.+   |++++|+|+++..+...... ...+...       ++|++||+||+|+.+   .....+++.+++...
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMM-VEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHH-HHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            877777766   99999999988765554432 1222221       489999999999975   334455667777776


Q ss_pred             CCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        382 NFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       382 ~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      +..+|+++||++|.||+++|+++.+.+.
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            6556999999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.82  E-value=8.9e-21  Score=182.25  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=120.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------MSRVYY  313 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~~~~i  313 (452)
                      .++|+++|.+|+|||||+|+|++..+.....++++.+.....+..     ....+.||||+|+..+..      +...++
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-----~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-----KGYTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-----TTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-----CCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            579999999999999999999997776666777777766655544     347899999999987764      234555


Q ss_pred             --cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        314 --QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       314 --~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                        ..+|++|+|+|+++..+..   .|...+...       ++|++||+||+|+.+ +.+. .+..++.+.+++. ++++|
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~-vi~~S  147 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIP-VVFTS  147 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSC-EEECC
T ss_pred             hhcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCccchH-HHHHHHHHHcCCC-EEEEE
Confidence              5899999999999865433   344444432       499999999999865 3333 2467888888976 99999


Q ss_pred             CCCCccHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~  409 (452)
                      |++|.|++++|+++.+.+.
T Consensus       148 A~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          148 SVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCcCHHHHHHHHHHHhh
Confidence            9999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.82  E-value=2.5e-21  Score=204.90  Aligned_cols=166  Identities=17%  Similarity=0.287  Sum_probs=125.9

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEE------EeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL------SHKKYGGRPVKLQIWDIAGQDRYICMSRV  311 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i------~~~~~~~~~~~l~l~DtaG~e~~~~~~~~  311 (452)
                      ...+||+++|.+|||||||++++++..+...+.+|++.++.....      .+ ..++..+.+.+|||+|++.|..++..
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~-~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEN-DDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTT-CSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceee-cCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456999999999999999999999998888888999888776531      11 01344688999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      +++.+|++|+|||+++.   +++..|+..+...     ..++|+|||+||+|+.+ +.+..+++++++...+.. +++||
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~-----~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vS  188 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY-----GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRIS  188 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHH-----SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEECC
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHh-----CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEEe
Confidence            99999999999999865   5667788888876     24689999999999987 677788888888888876 99999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhhh
Q psy14768        391 SKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      |++|.||+++|+.+.+.+.+...
T Consensus       189 A~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             C-----CTTHHHHHHHHHTCTTS
T ss_pred             cCcccCHHHHHHHHHHHHhcccc
Confidence            99999999999999998876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.81  E-value=5.9e-21  Score=183.29  Aligned_cols=151  Identities=15%  Similarity=0.111  Sum_probs=118.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh----------hhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC----------MSR  310 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~----------~~~  310 (452)
                      .+|+++|.+|+|||||+|+|++..+.....++++.+.....+.+   ++  ..+.||||||+..+..          +..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~---~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~   76 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL---GE--HLIEITDLPGVYSLVANAEGISQDEQIAA   76 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE---TT--EEEEEEECCCCSSCC------CHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE---CC--eEEEEEeCCCcccccccccCCCHHHHHHH
Confidence            47999999999999999999998777777788888888777766   44  4788999999977653          445


Q ss_pred             hhh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        311 VYY--QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       311 ~~i--~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      .++  .++|++|+|+|+++..++..+..|   +..       .++|++||+||+|+.+..........+.+.+++. +++
T Consensus        77 ~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~-------~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~  145 (256)
T 3iby_A           77 QSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE-------LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIP  145 (256)
T ss_dssp             HHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT-------SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEE
T ss_pred             HHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH-------cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEE
Confidence            566  899999999999986555443332   222       3589999999999865111112355677788876 999


Q ss_pred             ecCCCCccHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~  407 (452)
                      +||++|.|++++|+++.+.
T Consensus       146 ~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          146 IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CBGGGTBSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.81  E-value=3e-20  Score=173.24  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=111.4

Q ss_pred             CcccEEEeeecccCCcceeeecccccc--ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC----------cchhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKF--LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG----------QDRYI  306 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~--~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG----------~e~~~  306 (452)
                      ..++|+++|.+|+|||||+|+|+++..  .....++++.+.....+.    ......+.||||+|          ++.+.
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG----PAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES----CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec----CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            468999999999999999999998763  333344444444333322    13446788999999          45556


Q ss_pred             hhhhhhhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cc--ccHHHHHHHHHH
Q psy14768        307 CMSRVYYQN---SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQ--VEINEIEAVCHQ  380 (452)
Q Consensus       307 ~~~~~~i~~---ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~--~~~e~~~~~~~~  380 (452)
                      .+...+++.   +|++|+|+|+++..+..+. .|+..+..       .++|++||+||+|+.+ ..  ...+++.+....
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~  175 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELDR-RMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDA  175 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH-HHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence            666666666   7889999999987654433 34444443       2489999999999976 21  122333333444


Q ss_pred             c------CCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        381 Y------NFMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       381 ~------~~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +      ...+++++||++|.||+++|++|.+.+...
T Consensus       176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            2      455699999999999999999999887544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.81  E-value=1.6e-20  Score=181.86  Aligned_cols=152  Identities=16%  Similarity=0.148  Sum_probs=116.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh------hhhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI------CMSRVYY  313 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~------~~~~~~i  313 (452)
                      .++|+++|.+|||||||+|+|++........++++.+.....  +   +. ...+.+|||||++.+.      .+...++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~---~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--V---KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--C---TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--E---ec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence            478999999999999999999987655555576665543332  3   44 5678999999998775      4556666


Q ss_pred             c--CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        314 Q--NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       314 ~--~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      .  ++|++|+|||+++..++   ..|...+..       .++|++||+||+|+.+ +.+. .+...+.+.+++. +++||
T Consensus        77 ~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-vi~~S  144 (272)
T 3b1v_A           77 LSQRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVP-VVATS  144 (272)
T ss_dssp             HTTCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECB
T ss_pred             hcCCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCC-EEEEE
Confidence            5  69999999999986543   345444443       2489999999999865 3333 3567788888886 99999


Q ss_pred             CCCCccHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~  409 (452)
                      |++|.||+++|+++.+.+.
T Consensus       145 A~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSCT
T ss_pred             ccCCCCHHHHHHHHHHHHh
Confidence            9999999999999988653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.81  E-value=9.4e-21  Score=183.67  Aligned_cols=154  Identities=18%  Similarity=0.142  Sum_probs=118.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh----------hh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC----------MS  309 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~----------~~  309 (452)
                      .++|+++|.+|+|||||+|+|++..+...+.++++.+.....+..   .+  ..+.+|||||+..+..          +.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~---~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~   77 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST---TD--HQVTLVDLPGTYSLTTISSQTSLDEQIA   77 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC---SS--CEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe---CC--CceEEEECcCCCccccccccCCHHHHHH
Confidence            579999999999999999999998877778888888887777765   43  4678899999887652          22


Q ss_pred             hhh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768        310 RVY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       310 ~~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~  387 (452)
                      ..+  ++.+|++|+|+|+++...+..+..+   +...       ++|+++|+||+|+.+..........+.+.+++. ++
T Consensus        78 ~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i  146 (274)
T 3i8s_A           78 CHYILSGDADLLINVVDASNLERNLYLTLQ---LLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VI  146 (274)
T ss_dssp             HHHHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EE
T ss_pred             HHHHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EE
Confidence            233  3799999999999986554443333   3322       389999999999865111122356777888876 99


Q ss_pred             EecCCCCccHHHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ++||++|.|++++|+++.+.+.
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999987654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.80  E-value=4.5e-20  Score=191.79  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=99.7

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh--------h
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS--------R  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~--------~  310 (452)
                      .++|+++|.+|+|||||+|+|++.. ......++++.++....+.+   ++  +.+.||||+|++.+...+        .
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~---~g--~~l~liDT~G~~~~~~~ve~~gi~~~~  307 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH---DK--TMFRLTDTAGLREAGEEIEHEGIRRSR  307 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE---TT--EEEEEEC--------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE---CC--eEEEEEECCCCCcchhHHHHHHHHHHH
Confidence            5789999999999999999999864 45666788888887777766   44  679999999998765433        3


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      .+++++|++|+|||++++.+++.+..+...+...      .++|+++|+||+|+.+ ...   ..+++.+. ++.++++|
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~---~~~~l~~~-~~~~~i~v  377 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADA---LIRAIADG-TGTEVIGI  377 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHH---HHHHHHHH-HTSCEEEC
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccch---hHHHHHhc-CCCceEEE
Confidence            3688999999999999998886554444444433      2589999999999976 222   22334443 23459999


Q ss_pred             cCCCCccHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~  409 (452)
                      ||++|.||+++|+++.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999886

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.80  E-value=1.4e-19  Score=177.67  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=112.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YICMSR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~~~~~  310 (452)
                      ..+|+++|++|||||||+|+|++..+. .+..++++.+.....+..     ...++.||||||+..        +.....
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-----~~~~l~l~DTpG~~~~~~~l~~~~~~~~~   81 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-----GRRQIVFVDTPGLHKPMDALGEFMDQEVY   81 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-----TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-----CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence            467999999999999999999987664 445555555544433322     457899999999875        344556


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-cCCCEEEE
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWK-HDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-YNFMSWIE  388 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~-~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-~~~~~~~e  388 (452)
                      .+++.+|++|+|||++++.+..+  .|+ ..+...     ..++|+++|+||+|+.+...  + +.++.+. .++.++++
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-----~~~~p~ilV~NK~Dl~~~~~--~-~~~~~~~~~~~~~~~~  151 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPED--ELVARALKPL-----VGKVPILLVGNKLDAAKYPE--E-AMKAYHELLPEAEPRM  151 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-----TTTSCEEEEEECGGGCSSHH--H-HHHHHHHTSTTSEEEE
T ss_pred             HHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-----cCCCCEEEEEECcccCCchH--H-HHHHHHHhcCcCcEEE
Confidence            78999999999999998876654  333 444433     14699999999999975211  0 2223333 45666899


Q ss_pred             ecCCCCccHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i  408 (452)
                      +||++|.|++++|+.+...+
T Consensus       152 iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          152 LSALDERQVAELKADLLALM  171 (301)
T ss_dssp             CCTTCHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHhc
Confidence            99999999999999998755

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.79  E-value=1.6e-19  Score=186.48  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=107.0

Q ss_pred             ccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---------hhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR---------YICMSR  310 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~---------~~~~~~  310 (452)
                      .+|+++|+||||||||+|+|++++. +....++++.|.....+.+   ++.  .+.+|||+|++.         +..++.
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~---~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~   76 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW---YGK--TFKLVDTCGVFDNPQDIISQKMKEVTL   76 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE---TTE--EEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE---CCe--EEEEEECCCccccccchHHHHHHHHHH
Confidence            4799999999999999999998664 3566688888888777777   554  578999999764         234456


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH-HHHHHHcCCCEEEEe
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI-EAVCHQYNFMSWIEV  389 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~-~~~~~~~~~~~~~ev  389 (452)
                      .+++.||++|+|||++++.++.+... ...+...       ++|++||+||+|+.+. . ..+. .++. .+++..++++
T Consensus        77 ~~~~~ad~il~V~D~~~~~~~~d~~i-~~~l~~~-------~~p~ilv~NK~D~~~~-~-~~~~~~~~~-~lg~~~~~~i  145 (439)
T 1mky_A           77 NMIREADLVLFVVDGKRGITKEDESL-ADFLRKS-------TVDTILVANKAENLRE-F-EREVKPELY-SLGFGEPIPV  145 (439)
T ss_dssp             HHHTTCSEEEEEEETTTCCCHHHHHH-HHHHHHH-------TCCEEEEEESCCSHHH-H-HHHTHHHHG-GGSSCSCEEC
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHH-HHHHHHc-------CCCEEEEEeCCCCccc-c-HHHHHHHHH-hcCCCCEEEE
Confidence            78999999999999998877665322 1222222       4899999999998531 1 1222 3343 4676458999


Q ss_pred             cCCCCccHHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~  410 (452)
                      ||++|.|+.++|+++.+.+.+
T Consensus       146 SA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          146 SAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eccCCCCHHHHHHHHHHhccc
Confidence            999999999999999988754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.79  E-value=1.2e-19  Score=175.44  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh------hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC------MSRVYY  313 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~~~~i  313 (452)
                      .++|+++|.+|+|||||+|++++..+.....++++.+.....+.+   ++  ..+.+|||||+..+..      +...++
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   77 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY---RE--KEFLVVDLPGIYSLTAHSIDELIARNFI   77 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE---TT--EEEEEEECCCCSCCCSSCHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE---CC--ceEEEEeCCCccccccCCHHHHHHHHhh
Confidence            478999999999999999999998777778888888887777766   44  4588999999987765      455565


Q ss_pred             --cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        314 --QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       314 --~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                        .++|++|+|+|+++..  .. ..|...+...      ..+|+++|+||+|+.+ +.... +...+.+.+++. ++++|
T Consensus        78 ~~~~~d~vi~v~D~~~~~--~~-~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~-~~~~S  146 (271)
T 3k53_A           78 LDGNADVIVDIVDSTCLM--RN-LFLTLELFEM------EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVP-VIPTN  146 (271)
T ss_dssp             HTTCCSEEEEEEEGGGHH--HH-HHHHHHHHHT------TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSC-EEECB
T ss_pred             hccCCcEEEEEecCCcch--hh-HHHHHHHHhc------CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCc-EEEEE
Confidence              6899999999999853  22 2333333332      2389999999999865 22222 267788888877 99999


Q ss_pred             CCCCccHHHHHHHHHHHHHHh
Q psy14768        391 SKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~~~  411 (452)
                      |++|.|++++|+.+.+.+...
T Consensus       147 a~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          147 AKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             GGGTBTHHHHHHHHHHHHHTC
T ss_pred             eCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999887644

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.78  E-value=2.5e-19  Score=186.40  Aligned_cols=153  Identities=14%  Similarity=0.137  Sum_probs=118.9

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-hhhh--------hh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-RYIC--------MS  309 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-~~~~--------~~  309 (452)
                      .++|+++|.+|||||||+|+|++.. ......++++.|+....+.+   ++  ..+.||||+|++ .+..        ..
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~---~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~  317 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI---RG--ILFRIVDTAGVRSETNDLVERLGIERT  317 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE---TT--EEEEEEESSCCCSSCCTTCCCCCHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec---CC--eEEEEEECCCccccchhhHHHHHHHHH
Confidence            3799999999999999999999864 45666788888888777777   54  568899999998 6542        23


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ..+++.+|++|+|||++++.++++.+.| ..+         .++|+++|+||+|+.+ .+..+++.++.. .+.. +++|
T Consensus       318 ~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l---------~~~piivV~NK~DL~~-~~~~~~~~~~~~-~~~~-~i~i  384 (482)
T 1xzp_A          318 LQEIEKADIVLFVLDASSPLDEEDRKIL-ERI---------KNKRYLVVINKVDVVE-KINEEEIKNKLG-TDRH-MVKI  384 (482)
T ss_dssp             HHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH---------TTSSEEEEEEECSSCC-CCCHHHHHHHHT-CSTT-EEEE
T ss_pred             HHHhhcccEEEEEecCCCCCCHHHHHHH-HHh---------cCCCEEEEEECccccc-ccCHHHHHHHhc-CCCc-EEEE
Confidence            4578999999999999999888775443 222         2489999999999975 234455554432 2234 8999


Q ss_pred             cCCCCccHHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~  410 (452)
                      ||++|.||+++|+++.+.+..
T Consensus       385 SAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHTHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999997653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=6.1e-20  Score=170.68  Aligned_cols=146  Identities=20%  Similarity=0.199  Sum_probs=105.6

Q ss_pred             CCcccEEEeeecccCCcceeeecccccccc---ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ  314 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~---~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~  314 (452)
                      ...++|+++|++|+|||||+++|++..+..   .+.++++.++            ..+.+.+|||+|++.+..++..+++
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~~~~~~~~~~~   77 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVKLRYKLSDYLK   77 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------------eCceEEEEECCCcHHHHHHHHHHHH
Confidence            346899999999999999999999876543   3444444332            3456889999999999988888887


Q ss_pred             C----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc------HHHHHHHHHHcC
Q psy14768        315 N----SDGCIIMFDLT-NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE------INEIEAVCHQYN  382 (452)
Q Consensus       315 ~----ad~vIlV~D~t-~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~------~e~~~~~~~~~~  382 (452)
                      .    +|++|+|||++ +..+|..+..|+..+..........++|++||+||+|+.+ +.+.      .+++..++...+
T Consensus        78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~  157 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK  157 (218)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            7    89999999999 8899999988887776542211235799999999999986 3222      455666766666


Q ss_pred             CCEEEEecCCCCcc
Q psy14768        383 FMSWIEVSSKEHLM  396 (452)
Q Consensus       383 ~~~~~evSAktg~n  396 (452)
                      .. |+++||++|.+
T Consensus       158 ~~-~~~~Sa~~~~~  170 (218)
T 1nrj_B          158 KS-LNEVERKINEE  170 (218)
T ss_dssp             HH-HHC--------
T ss_pred             cc-ccccccccccc
Confidence            55 89999998865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.77  E-value=6e-18  Score=170.05  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=121.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh---------hh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI---------CM  308 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~---------~~  308 (452)
                      ...++|+++|.+|||||||+|++++........+.++.+.....+..     ....+.+|||+|+..+.         ..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  239 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-----GYFRYQIIDTPGLLDRPISERNEIEKQA  239 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-----TTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-----cCceEEEEeCCCccccchhhhhHHHHHH
Confidence            45689999999999999999999987654444444444444333333     24678999999975432         11


Q ss_pred             hhhhhcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEE
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRK--SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~--S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~  386 (452)
                      ...+...+|++|+|+|+++..  +++....|+..+....     .++|+++|+||+|+.+.. ..+++.+++...+.. +
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-----~~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~-~  312 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-----KDLPFLVVINKIDVADEE-NIKRLEKFVKEKGLN-P  312 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-----TTSCEEEEECCTTTCCHH-HHHHHHHHHHHTTCC-C
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-----CCCCEEEEEECcccCChH-HHHHHHHHHHhcCCC-e
Confidence            123455799999999999877  7888888888887652     269999999999997621 124556666666665 9


Q ss_pred             EEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ++|||++|.||+++|+++.+.+....
T Consensus       313 ~~iSA~~g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          313 IKISALKGTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999886543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.76  E-value=6.9e-19  Score=180.08  Aligned_cols=156  Identities=15%  Similarity=0.111  Sum_probs=113.8

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh-------h
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM-------S  309 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~-------~  309 (452)
                      ...++|+++|..|+|||||+|++++..+ .....++++.+.....+.+   .+. ..+.||||+|++.|..+       .
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~---~~~-~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL---HPI-GPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE---TTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE---CCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence            3468999999999999999999998775 3455567777777777766   433 37899999999877654       2


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEe
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      ..++..+|++|+|||++..   .....|+..+...       ++|+++|+||+|+.+... .+..+++.+.+++. ++++
T Consensus       108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~-~~~~~~l~~~~g~~-v~~v  175 (423)
T 3qq5_A          108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM-------EIPFVVVVNKIDVLGEKA-EELKGLYESRYEAK-VLLV  175 (423)
T ss_dssp             HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-------TCCEEEECCCCTTTTCCC-THHHHHSSCCTTCC-CCCC
T ss_pred             HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-------CCCEEEEEeCcCCCCccH-HHHHHHHHHHcCCC-EEEE
Confidence            4578999999999999333   2334566666654       489999999999986222 25666777777775 9999


Q ss_pred             cCCCCccHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~  409 (452)
                      ||++|.|++++|+++.+.+.
T Consensus       176 SAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHSC
T ss_pred             ECCCCCCHHHHHHHHHHhhh
Confidence            99999999999999998873

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.75  E-value=8.8e-19  Score=174.77  Aligned_cols=162  Identities=11%  Similarity=0.148  Sum_probs=120.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhhhhh---h
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMSRVY---Y  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~~~~---i  313 (452)
                      .+|+++|.+|||||||+|++++........+.++.+.....+.+   ++ ...+.||||+|+..    +..+...+   +
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~---~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i  234 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET---DD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI  234 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC---SS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe---CC-CceEEEecCCCCcccccccchhHHHHHHHH
Confidence            58999999999999999999986543333343443333333444   32 24789999999643    33444455   4


Q ss_pred             cCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-CEEEEe
Q psy14768        314 QNSDGCIIMFDLTN---RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-MSWIEV  389 (452)
Q Consensus       314 ~~ad~vIlV~D~t~---~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-~~~~ev  389 (452)
                      +++|++|+|||+++   ..+++++..|..++..+.  ....++|++||+||+|+.+.   .+..+++.+.+.. .+++++
T Consensus       235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~--~~l~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l~~~~~v~~i  309 (342)
T 1lnz_A          235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN--LRLTERPQIIVANKMDMPEA---AENLEAFKEKLTDDYPVFPI  309 (342)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC--SSTTTSCBCBEEECTTSTTH---HHHHHHHHHHCCSCCCBCCC
T ss_pred             HhccEEEEEEECCcccccChHHHHHHHHHHHHHhh--hhhcCCCEEEEEECccCCCC---HHHHHHHHHHhhcCCCEEEE
Confidence            45999999999998   788999999999988761  11257999999999999751   2456677777763 348999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ||+++.||+++|++|.+.+.+.
T Consensus       310 SA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          310 SAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSC
T ss_pred             ECCCCcCHHHHHHHHHHHHhhC
Confidence            9999999999999999887543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.75  E-value=2.4e-19  Score=185.01  Aligned_cols=152  Identities=15%  Similarity=0.124  Sum_probs=101.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc--------hhhhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD--------RYICMSRV  311 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e--------~~~~~~~~  311 (452)
                      .+|+++|++|||||||+|+|++.++. ....++++.|.....+.+     ....+.+|||+|++        .+..++..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-----LNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-----CSSCCEEEC---------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-----CCceEEEEECCCCCCcchhHHHHHHHHHHH
Confidence            68999999999999999999986643 444566666665555433     44568999999986        56667778


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      +++.+|++|+|+|++++.++.+.. +...+.       ..++|++||+||+|+.+..   .+..++. .+++..++++||
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~-~~~~l~-------~~~~pvilv~NK~D~~~~~---~~~~~~~-~lg~~~~~~iSA  146 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEE-VAKILY-------RTKKPVVLAVNKLDNTEMR---ANIYDFY-SLGFGEPYPISG  146 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHH-HHHHHT-------TCCSCEEEEEECCCC--------CCCSSG-GGSSCCCEECBT
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECccCccch---hhHHHHH-HcCCCCeEEEeC
Confidence            899999999999999988877642 222232       2468999999999987511   1111222 345545899999


Q ss_pred             CCCccHHHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~  409 (452)
                      ++|.|+.++|+++.+.+.
T Consensus       147 ~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGG
T ss_pred             cCCCChHHHHHHHHHhcC
Confidence            999999999999988774

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.73  E-value=2e-17  Score=168.94  Aligned_cols=161  Identities=14%  Similarity=0.141  Sum_probs=114.0

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEE---------------------EeeecCCeeEEEE
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL---------------------SHKKYGGRPVKLQ  295 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i---------------------~~~~~~~~~~~l~  295 (452)
                      ....++|+++|.+|+|||||+++|++......    .+  +....+                     ...........+.
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS   78 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceEE
Confidence            34568999999999999999999986432210    00  000000                     0000011236899


Q ss_pred             EEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---ccHH
Q psy14768        296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VEIN  372 (452)
Q Consensus       296 l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~e  372 (452)
                      ||||||++.|...+..++..+|++|+|+|++++.++.....|+..+...      ..+|+++|+||+|+.+..   ...+
T Consensus        79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~~  152 (403)
T 3sjy_A           79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYR  152 (403)
T ss_dssp             EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc------CCCCEEEEEECccccchHHHHHHHH
Confidence            9999999999999999999999999999999988777777777766654      226899999999998621   1222


Q ss_pred             HHHHHHHHcC--CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        373 EIEAVCHQYN--FMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       373 ~~~~~~~~~~--~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ++.++....+  ..+++++||++|.||+++|+++.+.+.
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            3333333322  235999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.73  E-value=1.6e-17  Score=176.80  Aligned_cols=162  Identities=15%  Similarity=0.190  Sum_probs=115.4

Q ss_pred             cccEEEeeecccCCcceeeeccccc--ccc-----cc--------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK--FLD-----NY--------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~--~~~-----~~--------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      ..+|+|+|..++|||||+++|+...  +..     ..        ..+++.......+.+...++..+.+.||||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            3589999999999999999998521  110     00        11222222223333311145568999999999999


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~  384 (452)
                      |...+..+++.+|++|+|+|++++.+++....|...+...        +|+++|+||+|+.+.. ..+..+++.+.++..
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~--------ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD--------LEVVPVLNKIDLPAAD-PERVAEEIEDIVGID  154 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTT--------CEEEEEEECTTSTTCC-HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC--------CCEEEeeeccCccccc-HHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999988888776654        8999999999997521 334456677777653


Q ss_pred             --EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 --SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 --~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                        .++++||++|.||+++|+++.+.+..
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCC
Confidence              37999999999999999999887643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.72  E-value=4e-17  Score=164.24  Aligned_cols=162  Identities=17%  Similarity=0.139  Sum_probs=112.4

Q ss_pred             ccc-EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCc---------chhhhhh
Q psy14768        240 TYP-ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ---------DRYICMS  309 (452)
Q Consensus       240 ~~k-I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~---------e~~~~~~  309 (452)
                      .++ |+++|.+|+|||||+|++++..+.....+.++.|.....+.+   ++  ..+.+|||+|+         +.|....
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~---~g--~~v~l~DT~G~i~~lp~~lve~f~~tl  252 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI---NN--RKIMLVDTVGFIRGIPPQIVDAFFVTL  252 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE---TT--EEEEEEECCCBCSSCCGGGHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE---CC--EEEEEEeCCCchhcCCHHHHHHHHHHH
Confidence            355 999999999999999999987766666677777777777777   55  46789999996         2233333


Q ss_pred             hhhhcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc--cHHHHHHHHHHc-C-C
Q psy14768        310 RVYYQNSDGCIIMFDLTNRK--SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV--EINEIEAVCHQY-N-F  383 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~--S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~e~~~~~~~~~-~-~  383 (452)
                       ..+..+|++++|+|++++.  .++.+..|...+...    ...++|+++|+||+|+.+...  ..+.+..+...+ . .
T Consensus       253 -~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~  327 (364)
T 2qtf_A          253 -SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI  327 (364)
T ss_dssp             -HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred             -HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence             2578999999999999887  566666676666654    335689999999999975221  112333444555 2 2


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ..++++||+++.|++++++++.+.+...
T Consensus       328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          328 FDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            3479999999999999999998876544

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.72  E-value=1.8e-17  Score=171.06  Aligned_cols=152  Identities=11%  Similarity=0.133  Sum_probs=108.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-------------------------------cccccCCcceeeeEEEEEEeee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-------------------------------FLDNYKNTVGVDFSTKLLSHKK  286 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-------------------------------~~~~~~~t~~~d~~~~~i~~~~  286 (452)
                      ...++|+++|++|+|||||+++|+...                               ...+...+++.+.....+..  
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~--   92 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET--   92 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence            345899999999999999999996421                               11122245666666655544  


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh---H----HHHHHHHHHHHhhhhhcCCCCCc-EEEE
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS---F----ESVVQWKHDLDSKCILDNGAMLP-CLLL  358 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S---~----~~~~~~~~~i~~~~~~~~~~~~p-iilV  358 (452)
                         ....+.||||||+++|...+..+++.+|++|||+|++++..   |    +..+.+. .+..       .++| +|||
T Consensus        93 ---~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~-~~~~-------~~v~~iIvv  161 (439)
T 3j2k_7           93 ---EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM-LAKT-------AGVKHLIVL  161 (439)
T ss_pred             ---CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHH-HHHH-------cCCCeEEEE
Confidence               44689999999999999999999999999999999998743   1    2222222 2221       2366 9999


Q ss_pred             EECCCCCC-------CcccHHHHHHHHHHcCC-----CEEEEecCCCCccHHHHHH
Q psy14768        359 ASKCDLPD-------RQVEINEIEAVCHQYNF-----MSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       359 ~NK~Dl~~-------~~~~~e~~~~~~~~~~~-----~~~~evSAktg~nv~~lf~  402 (452)
                      +||+|+..       .+...+++..++..+++     .+|+++||++|.|+.++++
T Consensus       162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            99999953       11223445556666664     3589999999999999766

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.72  E-value=1.3e-17  Score=163.64  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=110.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-hh--------hhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-RY--------ICMS  309 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-~~--------~~~~  309 (452)
                      ..+|+++|++|+|||||+|++++..+. .+..+.++.+.....+..     ....+.+|||+|+. ..        ....
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-----~~~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-----GAYQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-----TTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-----CCeeEEEEECcCCCccchhhHHHHHHHHH
Confidence            357999999999999999999987653 344454444433333322     34678999999987 32        2223


Q ss_pred             hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEE
Q psy14768        310 RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       310 ~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ..+++.+|++++|+|+++ .+-.+  .|+.....      ..+.|+++|+||+|+.. .....+.+.++.+.+++..+++
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~------~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~  153 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDD--EMVLNKLR------EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP  153 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHH--HHHHHHHH------SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHH------hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence            456889999999999987 44333  23322211      23589999999999975 3334455666767777766899


Q ss_pred             ecCCCCccHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i  408 (452)
                      +||+++.|++++++.+...+
T Consensus       154 iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          154 ISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCTTTTTTHHHHHHHHHTTC
T ss_pred             EECCCCCCHHHHHHHHHHhC
Confidence            99999999999999998654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.72  E-value=1.1e-17  Score=174.53  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV  311 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~  311 (452)
                      ..++|+++|..++|||||+++|++..       +..+...+++.+.....+.+   +  ...+.||||||++.|...+..
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~--~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL---E--NYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE---T--TEEEEECCCSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE---C--CEEEEEEECCChHHHHHHHHH
Confidence            35899999999999999999999755       33444455555554444444   3  367899999999999988888


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHc-C--CCE
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQY-N--FMS  385 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~-~--~~~  385 (452)
                      ++..+|++|||+|++++..-+..+.+. .+..       .++|+++|+||+|+.+   .+...+++.+++... +  ..+
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~-------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~  164 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML-ILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  164 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH-HHHH-------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence            999999999999999854333332222 2222       2488899999999976   122344556666655 2  234


Q ss_pred             EEEecCCCCccHHHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ++++||++|.||++++++|.+.+.
T Consensus       165 ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          165 IIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999999988775

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.72  E-value=3.1e-18  Score=177.38  Aligned_cols=152  Identities=17%  Similarity=0.218  Sum_probs=106.2

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhh--------h
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMS--------R  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~--------~  310 (452)
                      .++|+++|.+|+|||||+|+|++.. .+....++++.++....+.+   ++  ..+.||||+|++.+....        .
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~---~g--~~v~liDT~G~~~~~~~ve~~gi~~~~  298 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV---GG--IPVQVLDTAGIRETSDQVEKIGVERSR  298 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE---TT--EEEEECC--------------------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE---CC--EEEEEEECCccccchhHHHHHHHHHHh
Confidence            5789999999999999999999854 34566688888877666666   44  567899999987654332        2


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEe
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEV  389 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~ev  389 (452)
                      .+++.+|++|+|||++++.++++ ..|+..+.         .+|+++|+||+|+.. ....  ...++.   ...+++++
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~---------~~piivV~NK~Dl~~~~~~~--~~~~~~---~~~~~i~i  363 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGD-QEIYEQVK---------HRPLILVMNKIDLVEKQLIT--SLEYPE---NITQIVHT  363 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT---------TSCEEEEEECTTSSCGGGST--TCCCCT---TCCCEEEE
T ss_pred             hhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc---------CCcEEEEEECCCCCcchhhH--HHHHhc---cCCcEEEE
Confidence            36789999999999999887766 33443332         269999999999976 2221  111111   23458999


Q ss_pred             cCCCCccHHHHHHHHHHHHHHh
Q psy14768        390 SSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ||++|.|++++|+++.+.+...
T Consensus       364 SAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          364 AAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             BTTTTBSHHHHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.71  E-value=2.4e-17  Score=175.19  Aligned_cols=162  Identities=17%  Similarity=0.227  Sum_probs=117.4

Q ss_pred             cccEEEeeecccCCcceeeecccccc-ccc------c--------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-LDN------Y--------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~------~--------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      ..+|+++|..++|||||+++|+.... +..      .        ..+++.......+.+...++..+.+.||||||+..
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            36899999999999999999985311 100      0        01122221122222211145568999999999999


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCC
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~  384 (452)
                      |...+..+++.+|++|+|||++++.+++....|.......        +|+++|+||+|+.... ..+..+++.+.+++.
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~--------ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD--------LVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTT--------CEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCC--------CCEEEEEeccCccccC-HHHHHHHHHHhhCCC
Confidence            9988889999999999999999999999988888776554        8999999999997522 234456666666653


Q ss_pred             --EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 --SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 --~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                        .++++||++|.||+++|+++++.+..
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhccc
Confidence              37999999999999999999877643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.71  E-value=3.4e-19  Score=187.08  Aligned_cols=159  Identities=18%  Similarity=0.199  Sum_probs=120.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..++|+++|.+|+|||||+++|.+..+...+.++++.++....+..   . ....+.||||||++.|..++..++..+|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~---~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~   78 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL---P-SGEKITFLDTPGHAAFSAMRARGTQVTDI   78 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS---S-CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe---C-CCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence            3578999999999999999999988777777788887776555433   2 23368899999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHH---HHHcC-CCEEEEecCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAV---CHQYN-FMSWIEVSSK  392 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~---~~~~~-~~~~~evSAk  392 (452)
                      +|||||++++...+..+.|.....        .++|++||+||+|+.+  .....++...+   +..++ ..+|+++||+
T Consensus        79 vILVVDa~dg~~~qt~e~l~~~~~--------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P           79 VILVVAADDGVMKQTVESIQHAKD--------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             CEEECBSSSCCCHHHHHHHHHHHT--------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             EEEEEECCCCccHHHHHHHHHHHH--------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence            999999999887777665544333        3489999999999975  11111122221   11121 2358999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRII  409 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~  409 (452)
                      +|.|++++|+++...+.
T Consensus       151 tG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          151 TGENMMALAEATIALAE  167 (537)
T ss_dssp             SSCSSHHHHHHHHHHHT
T ss_pred             CCCCchhHHHHHHHhhh
Confidence            99999999999987654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.70  E-value=6.4e-17  Score=165.43  Aligned_cols=161  Identities=14%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             CcccEEEeeecccCCcceeeecccc---ccccccCCccee--eeEEEEEEe-------ee---cC--C----eeEEEEEE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGV--DFSTKLLSH-------KK---YG--G----RPVKLQIW  297 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~--d~~~~~i~~-------~~---~~--~----~~~~l~l~  297 (452)
                      ..++|+++|..++|||||+++|.+.   .+..+..++++.  .+....+..       ..   +.  +    ....+.||
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            4589999999999999999999853   344444454443  333322211       00   00  1    13789999


Q ss_pred             ecCCcchhhhhhhhhhcCCCEEEEEEeCCChh----hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C--ccc
Q psy14768        298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK----SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R--QVE  370 (452)
Q Consensus       298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~----S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~--~~~  370 (452)
                      ||+|++.|...+...+..+|++|||+|++++.    +++.+..    +...      ...|+++|+||+|+.+ .  ...
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l------~~~~iivv~NK~Dl~~~~~~~~~  156 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL------GIDKIIIVQNKIDLVDEKQAEEN  156 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT------TCCCEEEEEECTTSSCTTTTTTH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc------CCCeEEEEEEccCCCCHHHHHHH
Confidence            99999999888888888999999999999653    3443332    2222      2258999999999976 2  234


Q ss_pred             HHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        371 INEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       371 ~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      .+++.+++...  ...+++++||++|.||+++|++|...+.
T Consensus       157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            56677776653  2234999999999999999999987554

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.70  E-value=6e-18  Score=176.75  Aligned_cols=152  Identities=14%  Similarity=0.197  Sum_probs=101.6

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKK  286 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~  286 (452)
                      ...++|+++|.+|+|||||+++|+....                               ..+...+++.+.....+.   
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~---  107 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS---  107 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe---
Confidence            3468999999999999999999975411                               111223445454444443   


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHH------HHHHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESV------VQWKHDLDSKCILDNGAMLPCLLLAS  360 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~------~~~~~~i~~~~~~~~~~~~piilV~N  360 (452)
                        .....+.||||||+++|...+..+++.+|++|||||++++.++..+      ......+...      ...|+|||+|
T Consensus       108 --~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~------~~~~iIvviN  179 (483)
T 3p26_A          108 --THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL------GIHNLIIAMN  179 (483)
T ss_dssp             --CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT------TCCCEEEEEE
T ss_pred             --cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc------CCCcEEEEEE
Confidence              3557899999999999999999999999999999999997654332      1111112211      2357999999


Q ss_pred             CCCCCC-CcccHH----HHHHHHHHcCC----CEEEEecCCCCccHHHH
Q psy14768        361 KCDLPD-RQVEIN----EIEAVCHQYNF----MSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       361 K~Dl~~-~~~~~e----~~~~~~~~~~~----~~~~evSAktg~nv~~l  400 (452)
                      |+|+.+ ++...+    ++..++..+++    .+|+++||++|.||.++
T Consensus       180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            999976 333333    34444455554    45899999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.70  E-value=9.8e-17  Score=151.77  Aligned_cols=164  Identities=10%  Similarity=0.105  Sum_probs=109.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCC--cceeeeEEEEEEeeecCCeeEEEEEEecCCc-----------ch
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN--TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-----------DR  304 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~--t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-----------e~  304 (452)
                      ...++|+++|.+|+|||||+|++++..+.....+  +++.+.....+.+   ++  ..+.||||||.           +.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW---KE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE---TT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe---CC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            3468999999999999999999999777655555  5566665555555   44  56889999994           33


Q ss_pred             hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc------HHHHHHH
Q psy14768        305 YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE------INEIEAV  377 (452)
Q Consensus       305 ~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~------~e~~~~~  377 (452)
                      +......+++.+|++|+|+|++.... .+ ..|+..+...+.  .....|++||+||+|+.+ ..+.      .+.++++
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~-~~-~~~l~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l  177 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTE-EE-HKATEKILKMFG--ERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL  177 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSS-HH-HHHHHHHHHHHH--HHHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCH-HH-HHHHHHHHHHhh--hhccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence            44444556778999999999976443 22 223333322110  012369999999999875 2211      2467888


Q ss_pred             HHHcCCCEEEEecCCCC-----ccHHHHHHHHHHHHHHh
Q psy14768        378 CHQYNFMSWIEVSSKEH-----LMIEDSMNFLVDRIICS  411 (452)
Q Consensus       378 ~~~~~~~~~~evSAktg-----~nv~~lf~~i~~~i~~~  411 (452)
                      .+.++.. |+.+++..+     .++.++|..+.+.+.+.
T Consensus       178 ~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          178 MDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            8888887 777777654     68899999888877553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.69  E-value=5.1e-17  Score=155.61  Aligned_cols=166  Identities=13%  Similarity=0.106  Sum_probs=110.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-cccccCCc-ceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh--------
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNT-VGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC--------  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t-~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~--------  307 (452)
                      ...++|+++|.+|+|||||+|++++.. +...+.++ ++.+.....+..   +  ...+.||||||+..+..        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~--~~~i~iiDTpG~~~~~~~~~~~~~~   94 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW---G--NREIVIIDTPDMFSWKDHCEALYKE   94 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE---T--TEEEEEEECCGGGGSSCCCHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe---C--CCEEEEEECcCCCCCCCCHHHHHHH
Confidence            346899999999999999999999866 55555555 566665555555   3  35689999999865431        


Q ss_pred             ---hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEE-CCCCCCCcccH-------HHHHH
Q psy14768        308 ---MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS-KCDLPDRQVEI-------NEIEA  376 (452)
Q Consensus       308 ---~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~N-K~Dl~~~~~~~-------e~~~~  376 (452)
                         ....+++.+|++|+|||+++. +... ..+...+...+.  .....|+++|+| |+|+.......       +++..
T Consensus        95 i~~~~~~~~~~~d~il~V~d~~~~-~~~~-~~~~~~l~~~~~--~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~  170 (260)
T 2xtp_A           95 VQRCYLLSAPGPHVLLLVTQLGRY-TSQD-QQAAQRVKEIFG--EDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSK  170 (260)
T ss_dssp             HHHHHHHHTTCCSEEEEEEETTCC-CHHH-HHHHHHHHHHHC--GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEEeCCCC-CHHH-HHHHHHHHHHhC--chhhccEEEEEEcccccCCccHHHHHHhcchHHHHH
Confidence               112367899999999999862 2111 112222332210  011356666666 99997522111       33555


Q ss_pred             HHHHcCCCE--E--EEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        377 VCHQYNFMS--W--IEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       377 ~~~~~~~~~--~--~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      +...++...  |  +++||+++.|++++|+++.+.+....
T Consensus       171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            777766431  3  78999999999999999999887643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.69  E-value=8.8e-17  Score=164.50  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=110.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccc---cccccccCCcceeeeEEEEEEeeec------------C--C----eeEEEEE
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQ---NKFLDNYKNTVGVDFSTKLLSHKKY------------G--G----RPVKLQI  296 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~---~~~~~~~~~t~~~d~~~~~i~~~~~------------~--~----~~~~l~l  296 (452)
                      ...++|+++|..++|||||+++|++   +.+..+...+++.+.......+...            .  +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            3458999999999999999999985   3344444454444332222221100            0  1    1378999


Q ss_pred             EecCCcchhhhhhhhhhcCCCEEEEEEeCCChh----hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C--cc
Q psy14768        297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK----SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R--QV  369 (452)
Q Consensus       297 ~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~----S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~--~~  369 (452)
                      |||||++.|...+...+..+|++|||+|++++.    +++.+..    +...      ...|+++|+||+|+.+ .  ..
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~------~~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII------GQKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH------TCCCEEEEEECGGGSCHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc------CCCcEEEEEECccCCCHHHHHH
Confidence            999999999888888888999999999999653    3333332    2222      1268999999999986 2  12


Q ss_pred             cHHHHHHHHHHc--CCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        370 EINEIEAVCHQY--NFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       370 ~~e~~~~~~~~~--~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ..+++.+++...  ...+++++||++|.||+++|++|...+.
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            344555555542  2335999999999999999999987554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.69  E-value=3.8e-17  Score=171.87  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=86.3

Q ss_pred             cccEEEeeecccCCcceeeeccccc-----------------ccc-----ccCCcceeeeEEEEEEeeecCCeeEEEEEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-----------------FLD-----NYKNTVGVDFSTKLLSHKKYGGRPVKLQIW  297 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-----------------~~~-----~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~  297 (452)
                      ..+|+|+|.+|+|||||+++|+...                 ...     +...+++.......+.+     ..+.+.||
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----~~~~i~li   87 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-----KDYLINLL   87 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-----TTEEEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-----CCEEEEEE
Confidence            4689999999999999999996210                 000     11123333333334433     45789999


Q ss_pred             ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      ||||++.|...+..+++.+|++|+|+|++++.+.+....|......        ++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~--------~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR--------HTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT--------TCCEEEEEECTTSCC
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--------CCCEEEEEeCCCCcc
Confidence            9999999999999999999999999999999888888777544333        489999999999964

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.68  E-value=4.8e-17  Score=165.77  Aligned_cols=156  Identities=13%  Similarity=0.121  Sum_probs=112.6

Q ss_pred             cccEEEeeecccCCcceeeeccccc-------cc---------cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-------FL---------DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-------~~---------~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      .++|+++|.+++|||||+++|++..       +.         .+...+++.+.....  +   ......+.||||||++
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~--~---~~~~~~~~iiDtpG~~   77 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE--Y---STAARHYAHTDCPGHA   77 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEE--E---ECSSCEEEEEECSSHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEE--e---ccCCeEEEEEECCChH
Confidence            4789999999999999999998631       11         001223344433222  2   3445678999999999


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHHHHH
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIEAVC  378 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~~~~  378 (452)
                      +|...+..++..+|++|+|+|++++...+..+.| ..+...       ++| +++|+||+|+.+ .   +...+++.+++
T Consensus        78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~-------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l  149 (397)
T 1d2e_A           78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI-------GVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (397)
T ss_dssp             HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT-------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc-------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence            9988888899999999999999998766665555 333322       378 789999999974 1   12235677788


Q ss_pred             HHcCC----CEEEEecCCCCcc----------HHHHHHHHHHHH
Q psy14768        379 HQYNF----MSWIEVSSKEHLM----------IEDSMNFLVDRI  408 (452)
Q Consensus       379 ~~~~~----~~~~evSAktg~n----------v~~lf~~i~~~i  408 (452)
                      ..+++    .+|+++||++|.|          +.++|+.+.+.+
T Consensus       150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            87774    4699999999775          788888776644

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.68  E-value=3e-17  Score=167.71  Aligned_cols=145  Identities=17%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             CcccEEEeeecccCCcceeeecccc--------cccc---------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN--------KFLD---------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~--------~~~~---------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ..++|+++|.+|+|||||+++|++.        .+..         +...+++.+.....  +   +.....+.||||||
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~---~~~~~~~~iiDtpG   84 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE--Y---ETAKRHYSHVDCPG   84 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEE--E---ECSSCEEEEEECCC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeE--e---ccCCeEEEEEECCC
Confidence            4589999999999999999999863        1110         01223444443333  3   33456789999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-C---cccHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-R---QVEINEIEA  376 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~---~~~~e~~~~  376 (452)
                      +++|...+..++..+|++|+|+|++++...+..+ |+..+...       ++| +++|+||+|+.+ .   +...+++.+
T Consensus        85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~-~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~  156 (405)
T 2c78_A           85 HADYIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRD  156 (405)
T ss_dssp             SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence            9999988888999999999999999987665543 44444332       378 899999999974 1   122345667


Q ss_pred             HHHHcCC----CEEEEecCCCCcc
Q psy14768        377 VCHQYNF----MSWIEVSSKEHLM  396 (452)
Q Consensus       377 ~~~~~~~----~~~~evSAktg~n  396 (452)
                      ++..+++    .+++++||++|.|
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHhcccccCCCEEEccHHHhhh
Confidence            7777774    4699999999988

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.67  E-value=4.1e-17  Score=157.91  Aligned_cols=156  Identities=18%  Similarity=0.270  Sum_probs=92.6

Q ss_pred             CcccEEEeeecccCCcceeeecccc-cccccc-------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN-KFLDNY-------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-------  303 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~-------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-------  303 (452)
                      ..++|+++|.+|+|||||+|++++. .+...+       .+|++.+.....+..   ++..+.+.||||+|+.       
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE---GGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC-----CCEEEEEEECCCCSCCSCCTT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec---CCeEEEEEEEECCCccccccchh
Confidence            3589999999999999999998764 444444       577777777766655   6667899999999973       


Q ss_pred             hhhhhh-------hhhhc-------------CCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        304 RYICMS-------RVYYQ-------------NSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       304 ~~~~~~-------~~~i~-------------~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      .+..+.       ..++.             ++|+++++++.+. ...-.+ ..++..+..        ++|+|+|+||+
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~~--------~~pvi~V~nK~  154 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE--------KVNIIPLIAKA  154 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHTT--------TSCEEEEESSG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHhc--------cCCEEEEEecc
Confidence            233332       23333             3789999998765 223233 223444432        49999999999


Q ss_pred             CCCC-C--cccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        363 DLPD-R--QVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       363 Dl~~-~--~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      |+.. .  ....+.+.+.+...++. ++.+||+++.++.++++++.+.
T Consensus       155 D~~~~~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          155 DTLTPEECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcC
Confidence            9875 1  12223445555566776 8889999999999999888754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.67  E-value=7.2e-18  Score=173.85  Aligned_cols=158  Identities=13%  Similarity=0.232  Sum_probs=107.3

Q ss_pred             CcccEEEeeecccCCcceeeecccc--cccc-----------------------------ccCCcceeeeEEEEEEeeec
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN--KFLD-----------------------------NYKNTVGVDFSTKLLSHKKY  287 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~--~~~~-----------------------------~~~~t~~~d~~~~~i~~~~~  287 (452)
                      ..++|+++|.+++|||||+++|+..  .+..                             +...+++.+.....+     
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~-----   79 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-----   79 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-----
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE-----
Confidence            4589999999999999999999864  2211                             012344444443333     


Q ss_pred             CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCC-CcEEEEEECCCCCC
Q psy14768        288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAM-LPCLLLASKCDLPD  366 (452)
Q Consensus       288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~-~piilV~NK~Dl~~  366 (452)
                      +.....+.||||||+++|...+..++..+|++|+|||+++ .+|+....|..+...+.......+ .++|||+||+|+.+
T Consensus        80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence            3355679999999999999988899999999999999999 677765444333333211101122 46999999999975


Q ss_pred             C-------cccHHHHHHHHHHcCC----CEEEEecCCCCccHHHHHH
Q psy14768        367 R-------QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       367 ~-------~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~lf~  402 (452)
                      .       +...+++.+++..+++    .+|+++||++|.|+.+++.
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1       1224567777777774    4699999999999986654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.3e-17  Score=149.99  Aligned_cols=117  Identities=19%  Similarity=0.222  Sum_probs=87.3

Q ss_pred             CCcccEEEeeecccCCcceeeecccccccc---ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ  314 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~---~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~  314 (452)
                      ...++|+++|.+|+|||||++++++..+..   .+.++++.++            ..+.+.+|||+|++.+...+..++.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~~~~~~~~~~~  113 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------DGSGVTLVDFPGHVKLRYKLSDYLK  113 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC------------CCTTCSEEEETTCCBSSCCHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee------------cCCeEEEEECCCCchHHHHHHHHHH
Confidence            346899999999999999999999876543   2333333222            3456889999999998877777766


Q ss_pred             C----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        315 N----SDGCIIMFDLT-NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       315 ~----ad~vIlV~D~t-~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      .    +|++|+|||++ +..++..+..|+..+..........++|++||+||+|+.+
T Consensus       114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            5    89999999999 8999999988887776542111235799999999999976

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.67  E-value=1e-17  Score=163.37  Aligned_cols=159  Identities=16%  Similarity=0.143  Sum_probs=104.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc------cccCCc----------------------ceeee-------------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL------DNYKNT----------------------VGVDF-------------  277 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~------~~~~~t----------------------~~~d~-------------  277 (452)
                      ..++|+++|.+|+|||||+|+|++..+.      .+..|+                      ++.+.             
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999987763      233333                      11110             


Q ss_pred             --------EEEEEEeeecCCeeEEEEEEecCCcc-------------hhhhhhhhhhcCCCEEE-EEEeCCChhhHHHHH
Q psy14768        278 --------STKLLSHKKYGGRPVKLQIWDIAGQD-------------RYICMSRVYYQNSDGCI-IMFDLTNRKSFESVV  335 (452)
Q Consensus       278 --------~~~~i~~~~~~~~~~~l~l~DtaG~e-------------~~~~~~~~~i~~ad~vI-lV~D~t~~~S~~~~~  335 (452)
                              ....+.+.  ......+.||||||+.             .+..+...+++.++.+| +|+|+++..+.++..
T Consensus       105 g~~~gi~~~~~~~~~~--~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          105 GTNKGISPVPINLRVY--SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEE--ETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             ccCCCccccceEEEEe--CCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                    00000010  1113578999999964             34556677888998777 699999876666544


Q ss_pred             HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHH--cCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768        336 QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQ--YNFMSWIEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~--~~~~~~~evSAktg~nv~~lf~~i~~  406 (452)
                      .|...+.       ..+.|+++|+||+|+.+ .....+.++.....  .++.+++++||++|.|++++|+++.+
T Consensus       183 ~~~~~~~-------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 KIAKEVD-------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHHC-------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHHhC-------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            4444443       23589999999999976 22222222211011  13345789999999999999999887

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.66  E-value=2.6e-17  Score=170.70  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC--------cchhhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG--------QDRYICMSR  310 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG--------~e~~~~~~~  310 (452)
                      ..+|+++|++|||||||+|+|++.++. ....++++.+.....+     ......+.+|||+|        ++.+..+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~-----~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA-----EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC-----TTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE-----EECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            478999999999999999999986653 3444555555544443     44556789999999        777778888


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      .+++.+|++|+|+|+.++.+..+.  |+..+.+      ..++|++||+||+|+.+..   +...++ ..+++...+++|
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~------~~~~pvilV~NK~D~~~~~---~~~~e~-~~lg~~~~~~iS  165 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAADE--EVAKILY------RTKKPVVLAVNKLDNTEMR---ANIYDF-YSLGFGEPYPIS  165 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHHH--HHHHHHT------TCCSCEEEEEECC------------CCS-GGGSSSSEEECC
T ss_pred             hhHhhCCEEEEEEeCCCCCChHHH--HHHHHHH------HcCCCEEEEEECccchhhh---hhHHHH-HHcCCCceEEee
Confidence            899999999999999886665553  2222222      2469999999999986411   111111 133454468999


Q ss_pred             CCCCccHHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i~  409 (452)
                      |++|.|+.++|+.+.+.+.
T Consensus       166 A~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTTCTTHHHHHHHHHTTGG
T ss_pred             cccccchHHHHHHHHhhcc
Confidence            9999999999999987653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.65  E-value=3.3e-16  Score=153.64  Aligned_cols=133  Identities=17%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             ceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-hHH
Q psy14768        255 SYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-SFE  332 (452)
Q Consensus       255 SLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~  332 (452)
                      +|+.+++.+.|. ..+.||+|..+. ..+     .... .+++|||  +++|..++..+++++|++|+|||++++. +|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~-----~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~  102 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTP-----DETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY  102 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EEC-----CCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEE-----cCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence            799999999998 889999995543 332     2222 6889999  9999999999999999999999999987 789


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcC--CCEEEEecCCCCccHHHHHHHHHH
Q psy14768        333 SVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYN--FMSWIEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       333 ~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~--~~~~~evSAktg~nv~~lf~~i~~  406 (452)
                      .+..|+..+...       ++|++||+||+||.+ +.+  ++++++++.++  .. |++|||++|.||+++|..+..
T Consensus       103 ~l~~~l~~~~~~-------~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          103 IIDKFLVLAEKN-------ELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHHHT-------TCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHHHHC-------CCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhcC
Confidence            899998877543       589999999999976 322  45677777766  55 999999999999999987653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=1.8e-17  Score=166.70  Aligned_cols=159  Identities=14%  Similarity=0.254  Sum_probs=90.9

Q ss_pred             cccEEEeeecccCCcceeeecccc-ccccccC--------CcceeeeEEEEEEeeecCCeeEEEEEEecCCc-------c
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN-KFLDNYK--------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-------D  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~--------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-------e  303 (452)
                      .++|+++|.+|+|||||+|++++. .+...+.        +|++.++....+..   ++..+.+.+|||+|+       +
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~---~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE---RGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-------CEEEEEEEEC------------
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec---CCcccceEEEEeccccccCccHH
Confidence            488999999999999999997763 3333332        45555554444443   566678999999998       6


Q ss_pred             hhhhhhh-------hhhcCCCEE-----------EEEEeCCC-hhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        304 RYICMSR-------VYYQNSDGC-----------IIMFDLTN-RKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       304 ~~~~~~~-------~~i~~ad~v-----------IlV~D~t~-~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                      .|..++.       .+++.++++           ++||++++ ..++..+.. |+..+.        .++|+|+|+||+|
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~--------~~~piIlV~NK~D  185 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--------NKVNIVPVIAKAD  185 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--------S-SCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--------cCCCEEEEEECCC
Confidence            6766665       555544332           35666654 455555543 433332        4589999999999


Q ss_pred             CCC-CcccH--HHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        364 LPD-RQVEI--NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       364 l~~-~~~~~--e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +.. +++..  +++.+++...++. |+++||+++.+ ++.|.++++.+...
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            986 33333  4666777777776 89999999999 89999988888654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.65  E-value=8.9e-17  Score=165.66  Aligned_cols=152  Identities=13%  Similarity=0.146  Sum_probs=105.4

Q ss_pred             cccEEEeeecccCCcceeeeccccc--cccc----------cCCc---------------------ceeeeEEEEEEeee
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK--FLDN----------YKNT---------------------VGVDFSTKLLSHKK  286 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~--~~~~----------~~~t---------------------~~~d~~~~~i~~~~  286 (452)
                      .++|+++|.+++|||||+++|+.+.  +...          ..++                     ++.+.....+    
T Consensus        24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~----   99 (434)
T 1zun_B           24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF----   99 (434)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE----
T ss_pred             ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe----
Confidence            4899999999999999999998643  1111          1112                     2222222222    


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                       ......+.||||||++.|...+..++..+|++|||||++++...+..+ ++..+...      ...|+|+|+||+|+.+
T Consensus       100 -~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~------~~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          100 -STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLL------GIKHIVVAINKMDLNG  171 (434)
T ss_dssp             -ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHT------TCCEEEEEEECTTTTT
T ss_pred             -ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc------CCCeEEEEEEcCcCCc
Confidence             334567999999999999988888999999999999999976555443 33333322      1246999999999975


Q ss_pred             -Cc----ccHHHHHHHHHHcC--C--CEEEEecCCCCccHHHHHHH
Q psy14768        367 -RQ----VEINEIEAVCHQYN--F--MSWIEVSSKEHLMIEDSMNF  403 (452)
Q Consensus       367 -~~----~~~e~~~~~~~~~~--~--~~~~evSAktg~nv~~lf~~  403 (452)
                       .+    ...+++.++++.++  .  .+++++||++|.|+.++|+.
T Consensus       172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence             11    12345666777777  2  45899999999999986543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.65  E-value=1.4e-16  Score=157.43  Aligned_cols=135  Identities=13%  Similarity=0.068  Sum_probs=103.5

Q ss_pred             cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCC----------ChhhHHHHHHHH
Q psy14768        269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLT----------NRKSFESVVQWK  338 (452)
Q Consensus       269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t----------~~~S~~~~~~~~  338 (452)
                      ..+|+|...  ..+.+     +.+.+++|||+||++++.+|..||++++++|+|||++          +..++++...|+
T Consensus       151 r~~TiGi~~--~~~~~-----~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~  223 (327)
T 3ohm_A          151 RVPTTGIIE--YPFDL-----QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF  223 (327)
T ss_dssp             CCCCCSEEE--EEEEE-----TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred             cCceeeEEE--EEEEe-----eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHH
Confidence            567788543  33333     4588999999999999999999999999999999765          455666666666


Q ss_pred             HHHHhhhhhcCCCCCcEEEEEECCCCCC-C----------------cccHHHHHHHHHH---------cCCCEEEEecCC
Q psy14768        339 HDLDSKCILDNGAMLPCLLLASKCDLPD-R----------------QVEINEIEAVCHQ---------YNFMSWIEVSSK  392 (452)
Q Consensus       339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----------------~~~~e~~~~~~~~---------~~~~~~~evSAk  392 (452)
                      ..+...   ....+.|++||+||+|+.+ +                ..+.+++.+++..         .....+++|||+
T Consensus       224 ~~i~~~---~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~  300 (327)
T 3ohm_A          224 RTIITY---PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCAT  300 (327)
T ss_dssp             HHHHTS---GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTT
T ss_pred             HHHhhh---hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEee
Confidence            655443   2446799999999999854 2                4677888877532         122347999999


Q ss_pred             CCccHHHHHHHHHHHHHHhhh
Q psy14768        393 EHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~~~~  413 (452)
                      ++.||+++|..+.+.+++.+.
T Consensus       301 d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          301 DTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999987653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.65  E-value=4.7e-16  Score=143.30  Aligned_cols=157  Identities=17%  Similarity=0.166  Sum_probs=100.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----------hhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----------YICM  308 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----------~~~~  308 (452)
                      ...+|+++|++|+|||||+|++++..+.....++.|.......+.+   ++   .+.+|||+|+..          +...
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~---~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---AD---GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE---ET---TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe---cC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence            3578999999999999999999987654444455554433333333   22   467999999742          3333


Q ss_pred             hhhhh---cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcC
Q psy14768        309 SRVYY---QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYN  382 (452)
Q Consensus       309 ~~~~i---~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~  382 (452)
                      ...++   ..++++++|+|++++.++.+... ...+..       .++|+++|+||+|+..   ++...+.+..++...+
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~  170 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQM-IEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN  170 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHHH-HHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence            33344   57899999999998776654221 111221       2489999999999876   2222455666666655


Q ss_pred             C-CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        383 F-MSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       383 ~-~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      . ..++++||+++.+++++++.+.+.+.
T Consensus       171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          171 GDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            3 34789999999999999999987654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.64  E-value=6.1e-17  Score=167.94  Aligned_cols=149  Identities=9%  Similarity=0.108  Sum_probs=105.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccc--ccc-----------------------------ccCCcceeeeEEEEEEeeec
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK--FLD-----------------------------NYKNTVGVDFSTKLLSHKKY  287 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~--~~~-----------------------------~~~~t~~~d~~~~~i~~~~~  287 (452)
                      ..++|+++|.+|+|||||+++|+.+.  +..                             +...+++.+.....+.    
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~----   81 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE----   81 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE----
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe----
Confidence            35899999999999999999998641  110                             0013444444444433    


Q ss_pred             CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh---hH----HHHHHHHHHHHhhhhhcCCCCCc-EEEEE
Q psy14768        288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK---SF----ESVVQWKHDLDSKCILDNGAMLP-CLLLA  359 (452)
Q Consensus       288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~---S~----~~~~~~~~~i~~~~~~~~~~~~p-iilV~  359 (452)
                       .....+.||||||+++|...+..++..+|++|||||++++.   +|    +..+.+. .+..       .++| +|||+
T Consensus        82 -~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~-------~~v~~iivvi  152 (458)
T 1f60_A           82 -TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT-------LGVRQLIVAV  152 (458)
T ss_dssp             -CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH-------TTCCEEEEEE
T ss_pred             -cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHH-------cCCCeEEEEE
Confidence             34567999999999999998889999999999999999864   33    3333332 2222       2355 99999


Q ss_pred             ECCCCCC-C----cccHHHHHHHHHHcCC----CEEEEecCCCCccHHHH
Q psy14768        360 SKCDLPD-R----QVEINEIEAVCHQYNF----MSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       360 NK~Dl~~-~----~~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~l  400 (452)
                      ||+|+.+ .    +...+++.+++..+++    .+|+++||++|.|+.++
T Consensus       153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9999973 1    1233456667777775    45999999999999755

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.64  E-value=4.8e-18  Score=176.89  Aligned_cols=155  Identities=15%  Similarity=0.201  Sum_probs=110.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ...+|+++|.+++|||||+++|.+..+.....++++.+.....+.+   ++  ..+.||||||++.|..++..++..+|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~---~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~   77 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET---EN--GMITFLDTPGHAAFTSMRARGAQATDI   77 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT---TS--SCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE---CC--EEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence            3578999999999999999999987666666566666655444333   33  467899999999999999899999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHH--HHHHHHHHcC-CCEEEEecCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEIN--EIEAVCHQYN-FMSWIEVSSK  392 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e--~~~~~~~~~~-~~~~~evSAk  392 (452)
                      +|||||++++...+..+.|.....        .++|+++|+||+|+.+   ..+..+  +...+.+.++ ..+|+++||+
T Consensus        78 aILVVda~~g~~~qT~e~l~~~~~--------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           78 VVLVVAADDGVMPQTIEAIQHAKA--------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             EEEEEETTTBSCTTTHHHHHHHHH--------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred             EEEEeecccCccHHHHHHHHHHHh--------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence            999999998644343333322222        2489999999999964   111000  0000111222 2469999999


Q ss_pred             CCccHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVD  406 (452)
Q Consensus       393 tg~nv~~lf~~i~~  406 (452)
                      +|.||+++|++++.
T Consensus       150 tG~gI~eLle~I~~  163 (501)
T 1zo1_I          150 AGTGIDELLDAILL  163 (501)
T ss_dssp             TCTTCTTHHHHTTT
T ss_pred             eccCcchhhhhhhh
Confidence            99999999999874

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.64  E-value=3.7e-16  Score=166.40  Aligned_cols=164  Identities=15%  Similarity=0.146  Sum_probs=106.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-------------cCCeeEEEEEEecCCcchh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------------YGGRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-------------~~~~~~~l~l~DtaG~e~~  305 (452)
                      ..++|+++|.+++|||||++++++..+......+++.+.....+....             .+.....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            357899999999999999999997655433222333222222222100             0011225899999999999


Q ss_pred             hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc-------------cH
Q psy14768        306 ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV-------------EI  371 (452)
Q Consensus       306 ~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~-------------~~  371 (452)
                      ..++..+++.+|++|||||++++..-+....|.. +..       .++|+++|+||+|+.. ...             ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI-LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-HHH-------cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            9999999999999999999999433333333322 222       2489999999999964 110             00


Q ss_pred             -------H---HHHHHHHHcCC--------------CEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        372 -------N---EIEAVCHQYNF--------------MSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       372 -------e---~~~~~~~~~~~--------------~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                             +   +....+...++              .+++++||++|.||+++++++...+..
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                   0   11111222222              268999999999999999999887653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.64  E-value=3.7e-16  Score=157.57  Aligned_cols=147  Identities=9%  Similarity=-0.005  Sum_probs=107.6

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      +|+++|.+++|||||+++|+        ..+++.+.....+     ......+.||||||+++|...+...++.+|++||
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~-----~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail   89 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNN-----DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVL   89 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEE-----CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEE-----ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEE
Confidence            89999999999999999998        2233334443333     3344569999999999998888888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEE-CCCCCC-Ccc--cHHHHHHHHHHcC--CCEEEE--ecCC
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLAS-KCDLPD-RQV--EINEIEAVCHQYN--FMSWIE--VSSK  392 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~N-K~Dl~~-~~~--~~e~~~~~~~~~~--~~~~~e--vSAk  392 (452)
                      |+| +++. +.....++..+...       ++|. |+|+| |+|+ + ...  ..+++++++...+  ..++++  +||+
T Consensus        90 Vvd-~~g~-~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~  159 (370)
T 2elf_A           90 CIP-PQGL-DAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKS  159 (370)
T ss_dssp             EEC-TTCC-CHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred             EEc-CCCC-cHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            999 6543 33444455444433       3676 89999 9999 5 211  1245555555544  246899  9999


Q ss_pred             C---CccHHHHHHHHHHHHHHh
Q psy14768        393 E---HLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       393 t---g~nv~~lf~~i~~~i~~~  411 (452)
                      +   +.|++++|+.+.+.+...
T Consensus       160 ~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          160 AKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             SSSTTTTHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhhcccc
Confidence            9   999999999998887654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.64  E-value=3.7e-16  Score=156.36  Aligned_cols=134  Identities=12%  Similarity=0.103  Sum_probs=105.2

Q ss_pred             cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC----------hhhHHHHHHHH
Q psy14768        269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN----------RKSFESVVQWK  338 (452)
Q Consensus       269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~----------~~S~~~~~~~~  338 (452)
                      ..+|+|.+.  ..+.+     ..+.+.+|||+||+.|+.+|..+|++++++|+|||+++          ..++++...|+
T Consensus       177 ~~~T~Gi~~--~~~~~-----~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~  249 (353)
T 1cip_A          177 RVKTTGIVE--THFTF-----KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF  249 (353)
T ss_dssp             CCCCCSEEE--EEEEE-----TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH
T ss_pred             cCceeceEE--EEEee-----CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHH
Confidence            345666543  33444     36889999999999999999999999999999999999          45678777777


Q ss_pred             HHHHhhhhhcCCCCCcEEEEEECCCCCC-C---------------cccHHHHHHHHHH----------cCCCEEEEecCC
Q psy14768        339 HDLDSKCILDNGAMLPCLLLASKCDLPD-R---------------QVEINEIEAVCHQ----------YNFMSWIEVSSK  392 (452)
Q Consensus       339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~-~---------------~~~~e~~~~~~~~----------~~~~~~~evSAk  392 (452)
                      ..+...   ....+.|+|||+||+|+.+ +               .+..+++.+++..          .....|++|||+
T Consensus       250 ~~i~~~---~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~  326 (353)
T 1cip_A          250 DSICNN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCAT  326 (353)
T ss_dssp             HHHHTC---GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTT
T ss_pred             HHHHcC---ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECc
Confidence            776653   1346799999999999853 1               3667888888873          123458999999


Q ss_pred             CCccHHHHHHHHHHHHHHhh
Q psy14768        393 EHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~~~  412 (452)
                      ++.||+++|+++.+.+....
T Consensus       327 ~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          327 DTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHHHH
Confidence            99999999999999987654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.2e-16  Score=171.03  Aligned_cols=155  Identities=16%  Similarity=0.216  Sum_probs=105.6

Q ss_pred             CCcccEEEeeecccCCcceeeecccccccccc-------------------------------CCcceeeeEEEEEEeee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNY-------------------------------KNTVGVDFSTKLLSHKK  286 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~-------------------------------~~t~~~d~~~~~i~~~~  286 (452)
                      ...++|+++|.+|+|||||+++|+........                               ..+++.+.....+..  
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence            44689999999999999999999864322111                               245555555444433  


Q ss_pred             cCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh---HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        287 YGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS---FESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       287 ~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S---~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                         ....+.||||||+++|...+..+++.+|++|+|||++++..   |.....+...+....   .....++|||+||+|
T Consensus       243 ---~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~---~lgi~~iIVVvNKiD  316 (611)
T 3izq_1          243 ---HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS---SLGIHNLIIAMNKMD  316 (611)
T ss_dssp             ---SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH---TTTCCEEEEEEECTT
T ss_pred             ---CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH---HcCCCeEEEEEeccc
Confidence               45678999999999999988899999999999999997531   101111111111110   112245999999999


Q ss_pred             CCC-Cccc----HHHHHHHHHHcCC----CEEEEecCCCCccHHHH
Q psy14768        364 LPD-RQVE----INEIEAVCHQYNF----MSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       364 l~~-~~~~----~e~~~~~~~~~~~----~~~~evSAktg~nv~~l  400 (452)
                      +.+ .+..    .+++..++..+++    .+|++|||++|.||.++
T Consensus       317 l~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          317 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            976 2222    3344555555554    46999999999999876

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.62  E-value=1.4e-15  Score=152.14  Aligned_cols=120  Identities=8%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             eeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEE
Q psy14768        290 RPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLT----------NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA  359 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t----------~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~  359 (452)
                      +.+.+.+|||+||++|+.+|..+|++++++|+|||++          +..+|++...|+..+....   ...+.|+|||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg  257 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL  257 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence            6789999999999999999999999999999999998          7788988888887776541   23679999999


Q ss_pred             ECCCCCC-Cc--c-------------------cHHHHHHHHHH-c--------------CCCEEEEecCCCCccHHHHHH
Q psy14768        360 SKCDLPD-RQ--V-------------------EINEIEAVCHQ-Y--------------NFMSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       360 NK~Dl~~-~~--~-------------------~~e~~~~~~~~-~--------------~~~~~~evSAktg~nv~~lf~  402 (452)
                      ||+|+.+ +.  +                   ..+++.+++.+ +              ....+++|||+++.||+++|+
T Consensus       258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~  337 (354)
T 2xtz_A          258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK  337 (354)
T ss_dssp             ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence            9999854 11  1                   24666666443 1              123358999999999999999


Q ss_pred             HHHHHHHHhh
Q psy14768        403 FLVDRIICSK  412 (452)
Q Consensus       403 ~i~~~i~~~~  412 (452)
                      ++.+.+.+.+
T Consensus       338 ~v~~~I~~~~  347 (354)
T 2xtz_A          338 LVDETLRRRN  347 (354)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887544

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.61  E-value=1.2e-16  Score=166.18  Aligned_cols=155  Identities=12%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             CcccEEEeeecccCCcceeeecccc--ccc------------------------c-----ccCCcceeeeEEEEEEeeec
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN--KFL------------------------D-----NYKNTVGVDFSTKLLSHKKY  287 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~--~~~------------------------~-----~~~~t~~~d~~~~~i~~~~~  287 (452)
                      ..++|+++|..++|||||+++|+..  .+.                        .     +...+++.+.....+..   
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~---  118 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET---  118 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC---
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec---
Confidence            3579999999999999999998742  110                        0     00123333333223333   


Q ss_pred             CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh---hHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCC
Q psy14768        288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK---SFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCD  363 (452)
Q Consensus       288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~---S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~D  363 (452)
                        ....+.||||||++.|...+..++..+|++|||||++++.   +|+....|...+...    ...++| +|||+||+|
T Consensus       119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----~~~~vp~iivviNK~D  192 (467)
T 1r5b_A          119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----RTQGINHLVVVINKMD  192 (467)
T ss_dssp             --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----HHTTCSSEEEEEECTT
T ss_pred             --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----HHcCCCEEEEEEECcc
Confidence              3467899999999999988888999999999999999873   343222222222221    113466 999999999


Q ss_pred             CCCC-------cccHHHHHHHHHHc-CC-----CEEEEecCCCCccHHHHHH
Q psy14768        364 LPDR-------QVEINEIEAVCHQY-NF-----MSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       364 l~~~-------~~~~e~~~~~~~~~-~~-----~~~~evSAktg~nv~~lf~  402 (452)
                      +.+.       +...+++.+++..+ ++     .+|+++||++|.|+.++|+
T Consensus       193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence            9541       12233566677666 54     3589999999999988763

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.61  E-value=2.5e-15  Score=152.18  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=102.8

Q ss_pred             CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC----------hhhHHHHHHHHHH
Q psy14768        271 NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN----------RKSFESVVQWKHD  340 (452)
Q Consensus       271 ~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~----------~~S~~~~~~~~~~  340 (452)
                      +|+|.+.  ..+.+   +  .+.+.||||+||++|+.+|..+|++++++|||||+++          ..+|+++..|+..
T Consensus       203 ~TiGi~~--~~~~~---~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~  275 (402)
T 1azs_C          203 LTSGIFE--TKFQV---D--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS  275 (402)
T ss_dssp             CCCSEEE--EEEEE---T--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH
T ss_pred             ceeeeEE--EEeec---C--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHH
Confidence            4566554  33444   3  4889999999999999999999999999999999999          8899999999888


Q ss_pred             HHhhhhhcCCCCCcEEEEEECCCCCC-Cc---c---------------------------cHHHHHHHHH-----Hc---
Q psy14768        341 LDSKCILDNGAMLPCLLLASKCDLPD-RQ---V---------------------------EINEIEAVCH-----QY---  381 (452)
Q Consensus       341 i~~~~~~~~~~~~piilV~NK~Dl~~-~~---~---------------------------~~e~~~~~~~-----~~---  381 (452)
                      +....   ...++|+|||+||+|+.+ +.   +                           ..+++..|+.     ..   
T Consensus       276 i~~~~---~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~  352 (402)
T 1azs_C          276 IWNNR---WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTAS  352 (402)
T ss_dssp             HHTCT---TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHhcc---cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccc
Confidence            76641   346799999999999854 21   1                           1355655532     11   


Q ss_pred             ----CCCEEEEecCCCCccHHHHHHHHHHHHHHhhh
Q psy14768        382 ----NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       382 ----~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~  413 (452)
                          ....+++|||+++.||+++|.++.+.+...+.
T Consensus       353 ~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l  388 (402)
T 1azs_C          353 GDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  388 (402)
T ss_dssp             CTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence                23346899999999999999999888876543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.60  E-value=1.4e-15  Score=169.28  Aligned_cols=158  Identities=17%  Similarity=0.180  Sum_probs=110.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccc-------ccc---------ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNK-------FLD---------NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~-------~~~---------~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ...++|+++|.+++|||||+++|++..       +..         +...+++.+..  .+.+   +.....+.||||||
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva--~v~f---~~~~~kI~IIDTPG  368 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS--HVEY---DTPTRHYAHVDCPG  368 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCS--CEEE---ECSSCEEEEEECCC
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEE--EEEE---cCCCEEEEEEECCC
Confidence            345899999999999999999998631       000         01122222222  2222   44557789999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCC-Cc---ccHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPD-RQ---VEINEIEA  376 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~-~~---~~~e~~~~  376 (452)
                      +++|...+..++..+|++|||||++++...+..+.| ..+...       ++| +|||+||+|+.+ .+   ...+++.+
T Consensus       369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~e  440 (1289)
T 3avx_A          369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRE  440 (1289)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence            999998888899999999999999998665554433 333332       377 899999999975 11   22356777


Q ss_pred             HHHHcCC----CEEEEecCCCC--------ccHHHHHHHHHHHH
Q psy14768        377 VCHQYNF----MSWIEVSSKEH--------LMIEDSMNFLVDRI  408 (452)
Q Consensus       377 ~~~~~~~----~~~~evSAktg--------~nv~~lf~~i~~~i  408 (452)
                      ++..+++    .+++++||++|        .+|.++|+.+...+
T Consensus       441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            8887764    45999999999        56888888776544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.60  E-value=1.6e-15  Score=152.34  Aligned_cols=135  Identities=10%  Similarity=0.073  Sum_probs=98.1

Q ss_pred             cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCC----------hhhHHHHHHHH
Q psy14768        269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTN----------RKSFESVVQWK  338 (452)
Q Consensus       269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~----------~~S~~~~~~~~  338 (452)
                      ..+|+|.+.  ..+.+     +.+.+.+|||+||+.++.+|..+|++++++|+|||+++          ..++++...|+
T Consensus       185 r~~T~Gi~~--~~~~~-----~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~  257 (362)
T 1zcb_A          185 RRPTKGIHE--YDFEI-----KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF  257 (362)
T ss_dssp             CCCCSSEEE--EEEEE-----TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHH
T ss_pred             cCCccceEE--EEeee-----CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHH
Confidence            345667554  33444     35889999999999999999999999999999999999          67888888887


Q ss_pred             HHHHhhhhhcCCCCCcEEEEEECCCCCC-C----------------cccHHHHHHHHHH----------cCCCEEEEecC
Q psy14768        339 HDLDSKCILDNGAMLPCLLLASKCDLPD-R----------------QVEINEIEAVCHQ----------YNFMSWIEVSS  391 (452)
Q Consensus       339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----------------~~~~e~~~~~~~~----------~~~~~~~evSA  391 (452)
                      ..+....   ...+.|+|||+||+|+.+ +                .+..+++.+++..          .....+++|||
T Consensus       258 ~~i~~~~---~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA  334 (362)
T 1zcb_A          258 ETIVNNR---VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA  334 (362)
T ss_dssp             HHHHTCG---GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCT
T ss_pred             HHHhcch---hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEec
Confidence            7776541   346799999999999853 1                2667777777621          11234799999


Q ss_pred             CCCccHHHHHHHHHHHHHHhhh
Q psy14768        392 KEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~~~~  413 (452)
                      +++.||+++|.++.+.+...+-
T Consensus       335 ~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          335 INTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.58  E-value=2.1e-15  Score=149.58  Aligned_cols=132  Identities=14%  Similarity=0.113  Sum_probs=102.4

Q ss_pred             cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCC----------ChhhHHHHHHHH
Q psy14768        269 YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLT----------NRKSFESVVQWK  338 (452)
Q Consensus       269 ~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t----------~~~S~~~~~~~~  338 (452)
                      ..+|+|....  .+.+     +.+.+++|||+||++|+.+|..+|++++++|+|||++          +..++++...|+
T Consensus       145 ~~~TiGi~~~--~~~~-----~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~  217 (340)
T 4fid_A          145 RTKTTGIHEY--DFVV-----KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVF  217 (340)
T ss_dssp             CCCCCSCEEE--EEES-----SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHH
T ss_pred             ccceeeeEEE--EEEe-----eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHH
Confidence            6677885443  3333     4588999999999999999999999999999999999          667788777777


Q ss_pred             HHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHHHHHHHHHH-c--------------------
Q psy14768        339 HDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEINEIEAVCHQ-Y--------------------  381 (452)
Q Consensus       339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e~~~~~~~~-~--------------------  381 (452)
                      ..+...   ....++|++||+||+|+.+                .....+++.+++.. +                    
T Consensus       218 ~~i~~~---~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~  294 (340)
T 4fid_A          218 KDIMTN---EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANI  294 (340)
T ss_dssp             HHHHHC---GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC---------
T ss_pred             HHHhhh---hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhcccccccccc
Confidence            766543   1346799999999999853                01245566555433 3                    


Q ss_pred             -----CCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        382 -----NFMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       382 -----~~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                           ....+++|||+++.||+.+|..+.+.|+.
T Consensus       295 ~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          295 EGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             -----CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence                 12457999999999999999999999987

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.58  E-value=8.6e-17  Score=171.57  Aligned_cols=147  Identities=14%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-------------------------------cccccCCcceeeeEEEEEEeeec
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-------------------------------FLDNYKNTVGVDFSTKLLSHKKY  287 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-------------------------------~~~~~~~t~~~d~~~~~i~~~~~  287 (452)
                      ..++|+++|.+|+|||||+++|+...                               +.....++++.+.....+..   
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~---  252 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES---  252 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe---
Confidence            45789999999999999999996421                               11112345555555444433   


Q ss_pred             CCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhhhhcCCCCCc-EEEEE
Q psy14768        288 GGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRK-------SFESVVQWKHDLDSKCILDNGAMLP-CLLLA  359 (452)
Q Consensus       288 ~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~-------S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~  359 (452)
                        ....+.||||||++.|...+..++..+|++|||+|++++.       .-+..+.+. .+...       ++| +|||+
T Consensus       253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~l-------gip~iIvvi  322 (592)
T 3mca_A          253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRAL-------GISEIVVSV  322 (592)
T ss_dssp             --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHHS-------SCCCEEEEE
T ss_pred             --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHHc-------CCCeEEEEE
Confidence              4567899999999999988888899999999999999753       112222222 22221       255 99999


Q ss_pred             ECCCCCC-Ccc----cHHHHHHHH-HHcCCC----EEEEecCCCCccHH
Q psy14768        360 SKCDLPD-RQV----EINEIEAVC-HQYNFM----SWIEVSSKEHLMIE  398 (452)
Q Consensus       360 NK~Dl~~-~~~----~~e~~~~~~-~~~~~~----~~~evSAktg~nv~  398 (452)
                      ||+|+.+ ...    ..+++..++ ..+++.    +|+++||++|.||.
T Consensus       323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            9999975 211    123344444 445652    58999999999998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.57  E-value=6.2e-15  Score=159.41  Aligned_cols=113  Identities=14%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccC------------------CcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYK------------------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~------------------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ..+|+++|+.|+|||||++++++........                  .+++.......+     ....+.++||||+|
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-----~~~~~~~nliDTpG   83 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-----LFRGHRVFLLDAPG   83 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-----EETTEEEEEEECCC
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-----eeCCEEEEEEeCCC
Confidence            4689999999999999999998432211110                  122333333333     23467899999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      ++.|...+..+++.+|++++|+|++++...+....|......        ++|+++|+||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--------~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--------GLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--------TCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--------cCCEEEEecCCchh
Confidence            999998889999999999999999988776665444433332        48999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.54  E-value=1.9e-15  Score=151.88  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=103.8

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEE----------------------------------------
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK----------------------------------------  280 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~----------------------------------------  280 (452)
                      ..|+++|++|+|||||+|++++..+......+++......                                        
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999776443333222111000                                        


Q ss_pred             ------------EEEeeecCCeeEEEEEEecCCcchh-------------hhhhhhhhcCCCEEEEEEeCCChhhHHHHH
Q psy14768        281 ------------LLSHKKYGGRPVKLQIWDIAGQDRY-------------ICMSRVYYQNSDGCIIMFDLTNRKSFESVV  335 (452)
Q Consensus       281 ------------~i~~~~~~~~~~~l~l~DtaG~e~~-------------~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~  335 (452)
                                  .+.+  .......+.||||||+.++             ..+...+++++|++|+|+|..+.....  .
T Consensus       115 ~g~~~~~s~~~i~l~i--~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          115 TGRSKAISSVPIHLSI--YSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             SCTTCCCCCSCEEEEE--EETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             cCCCCCcccceEEEEE--eCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                        0000  0112335889999998776             455577899999999999876543221  2


Q ss_pred             HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768        336 QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~  406 (452)
                      .|+..+...    ...+.|+|+|+||+|+.+ .....+.++.+...++.. |+++|+.++.++++.+..+..
T Consensus       191 ~~~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          191 DAIKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYP-WVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             HHHHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTTCCHHHH
T ss_pred             HHHHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCC-eEEEEECChHHhccCCCHHHH
Confidence            344444443    345689999999999986 444444444444445554 999999999999877655433

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.52  E-value=3.4e-14  Score=149.48  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=79.0

Q ss_pred             cccEEEeeecccCCcceeeecccccccccc----------------------CCcceeeeEEEEEEeeecCCeeEEEEEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNY----------------------KNTVGVDFSTKLLSHKKYGGRPVKLQIW  297 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~----------------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~  297 (452)
                      ..+|+++|.+|+|||||+++|+........                      ..+++.+.....+     ....+.+.||
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-----~~~~~~i~li   87 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-----PYHDCLVNLL   87 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-----EETTEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-----EECCeEEEEE
Confidence            478999999999999999999853111000                      0111111112222     2345789999


Q ss_pred             ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      ||||++.|...+..+++.+|++|+|+|++++...+....|.. +.       ..++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~-~~-------~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEV-TR-------LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HT-------TTTCCEEEEEECTTSCC
T ss_pred             ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHH-HH-------HcCCCEEEEEcCcCCcc
Confidence            999999999888889999999999999998765444333322 22       23589999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.52  E-value=7.8e-14  Score=142.25  Aligned_cols=164  Identities=10%  Similarity=0.057  Sum_probs=112.4

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----hhhhhhh---hh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----YICMSRV---YY  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----~~~~~~~---~i  313 (452)
                      ..|+++|.+|+|||||++++++........+.++.+...-.+.+   ++ ...+.+||++|...    +..+...   .+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~---~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~  233 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV---SE-EERFTLADIPGIIEGASEGKGLGLEFLRHI  233 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC---SS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe---cC-cceEEEEeccccccchhhhhhhhHHHHHHH
Confidence            57899999999999999999975432222233333332223333   32 35688999999742    2222222   35


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt  393 (452)
                      +.++.+|+|+|++ ...+.++..|..++..+..  .....|.+||+||+|+... ...+++.++....+.. ++++||++
T Consensus       234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~--aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~-vi~iSA~~  308 (416)
T 1udx_A          234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEE-EAVKALADALAREGLA-VLPVSALT  308 (416)
T ss_dssp             TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSC-EEECCTTT
T ss_pred             HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH--HhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCe-EEEEECCC
Confidence            6799999999998 6667777777776655410  0124899999999998753 2334444555555655 89999999


Q ss_pred             CccHHHHHHHHHHHHHHhhh
Q psy14768        394 HLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~~~  413 (452)
                      +.+++++|+++.+.+.+...
T Consensus       309 g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          309 GAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTSCC
T ss_pred             ccCHHHHHHHHHHHHHhccc
Confidence            99999999999999876543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.52  E-value=3.2e-14  Score=154.42  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             CcccEEEeeecccCCcceeeecccccccc------cc------------CCcceeeeEEEEEEeeecCCeeEEEEEEecC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLD------NY------------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA  300 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------~~------------~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta  300 (452)
                      ...+|+|+|.+|+|||||+++|+......      ..            ..+++.......+.+     ..+.+.||||+
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-----~~~~i~liDTP   85 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-----KDHRINIIDTP   85 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-----TTEEEEEECCC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-----CCeEEEEEECc
Confidence            45789999999999999999998421100      00            112222222223333     35789999999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      |+..|...+..+++.+|++|+|+|++++.+++....|......        ++|+++|+||+|+..
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--------~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--------KVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--------TCCEEEEEECTTSTT
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--------CCCEEEEEECCCccc
Confidence            9999998889999999999999999999999888777754443        489999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.51  E-value=1.3e-14  Score=157.65  Aligned_cols=165  Identities=12%  Similarity=0.169  Sum_probs=110.5

Q ss_pred             CcccEEEeeecccCCcceeeecccccc-ccccCCcce--------------eee--------------------------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVG--------------VDF--------------------------  277 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~--------------~d~--------------------------  277 (452)
                      ..++|+|+|.+|+|||||+|+|++..+ .....+++.              .++                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998664 344455551              111                          


Q ss_pred             -------------EEEEEEeeecCCee--EEEEEEecCCcchh---hhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHH
Q psy14768        278 -------------STKLLSHKKYGGRP--VKLQIWDIAGQDRY---ICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKH  339 (452)
Q Consensus       278 -------------~~~~i~~~~~~~~~--~~l~l~DtaG~e~~---~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~  339 (452)
                                   ....+.+   ....  ..+.||||||....   ......+++++|++|+|+|++++.++.+...|..
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~---p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~  224 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEY---PLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN  224 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEE---CCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred             HHhhccccccccceEEEEEc---cchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence                         0000000   0000  35889999997653   3445678999999999999999988888877765


Q ss_pred             HHHhhhhhcCCCCCcEEEEEECCCCCC-CcccH---H-------HHHH-----HHHHcC-------CCEEEEecCC----
Q psy14768        340 DLDSKCILDNGAMLPCLLLASKCDLPD-RQVEI---N-------EIEA-----VCHQYN-------FMSWIEVSSK----  392 (452)
Q Consensus       340 ~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~---e-------~~~~-----~~~~~~-------~~~~~evSAk----  392 (452)
                      .+..       .+.|+++|+||+|+.. .....   +       .+..     +....+       ...+++|||+    
T Consensus       225 ~l~~-------~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~  297 (695)
T 2j69_A          225 YIKG-------RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALR  297 (695)
T ss_dssp             HTTT-------SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHH
T ss_pred             HHHh-------hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHH
Confidence            4432       2478999999999864 21111   0       1111     111111       1248999999    


Q ss_pred             ----------CCccHHHHHHHHHHHHHHhhh
Q psy14768        393 ----------EHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       393 ----------tg~nv~~lf~~i~~~i~~~~~  413 (452)
                                ++.|+++++..+.+.+...+.
T Consensus       298 ~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~~  328 (695)
T 2j69_A          298 RRLKNPQADLDGTGFPKFMDSLNTFLTRERA  328 (695)
T ss_dssp             HHHHCTTCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred             hhccCchhhhhccCHHHHHHHHHHHHHHhHH
Confidence                      999999999999887765443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.51  E-value=3.2e-14  Score=136.53  Aligned_cols=121  Identities=14%  Similarity=0.126  Sum_probs=84.4

Q ss_pred             CCcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhc--
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQ--  314 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~--  314 (452)
                      ...++|+++|.+|+|||||+|+++++.+ .....++++.+.....+..   +  ...+.||||||++.|......+++  
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~--~~~l~liDTpG~~~~~~~~~~~~~~i  108 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM---G--GFTINIIDTPGLVEAGYVNHQALELI  108 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE---T--TEEEEEEECCCSEETTEECHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE---C--CeeEEEEECCCCCCcccchHHHHHHH
Confidence            3568999999999999999999998664 2333344444555555544   3  457899999999887655444433  


Q ss_pred             -------CCCEEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        315 -------NSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       315 -------~ad~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                             .+|++|+|+|++... +... ..|+..+...+.  .....|+++|+||+|+..
T Consensus       109 ~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~--~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          109 KGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG--KEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC--GGGGGGEEEEEECTTCCC
T ss_pred             HHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc--hhhhcCEEEEEeCcccCC
Confidence                   789999999998754 4333 456666665421  111259999999999964

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.50  E-value=2.6e-14  Score=140.34  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=68.5

Q ss_pred             EEEEEEecCCcch-------------hhhhhhhhhcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEE
Q psy14768        292 VKLQIWDIAGQDR-------------YICMSRVYYQNSDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLL  357 (452)
Q Consensus       292 ~~l~l~DtaG~e~-------------~~~~~~~~i~~ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piil  357 (452)
                      ..+.||||||+..             +..+...+++.+|++|+|+|+++ ....++...+...+.       ..++|+++
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-------~~~~~~i~  203 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-------PEGKRTIG  203 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-------SSCSSEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-------CCCCcEEE
Confidence            4689999999753             34555678999999999999743 322122112222222       24589999


Q ss_pred             EEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCC------CccHHHHHHHHHHHHHH
Q psy14768        358 LASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE------HLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       358 V~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAkt------g~nv~~lf~~i~~~i~~  410 (452)
                      |+||+|+.+ .....+.+......++ ..|+.+|+.+      +.|+.++++.+...+..
T Consensus       204 v~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          204 VITKLDLMDKGTDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             EEECTTSSCSSCCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             EEcCcccCCcchHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            999999976 2222222221111111 2367776665      57788888887776654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.49  E-value=1.3e-14  Score=147.54  Aligned_cols=157  Identities=14%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee------------------ecCC-eeEEEEEEecCC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK------------------KYGG-RPVKLQIWDIAG  301 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~------------------~~~~-~~~~l~l~DtaG  301 (452)
                      ++|+++|.||||||||+|++++........+.++.+.......+.                  .+++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            479999999999999999999876544444444433222211100                  0022 247899999999


Q ss_pred             cchh----hhhhh---hhhcCCCEEEEEEeCCCh-----------hhHHHHHHHHHHHHhh-------------------
Q psy14768        302 QDRY----ICMSR---VYYQNSDGCIIMFDLTNR-----------KSFESVVQWKHDLDSK-------------------  344 (452)
Q Consensus       302 ~e~~----~~~~~---~~i~~ad~vIlV~D~t~~-----------~S~~~~~~~~~~i~~~-------------------  344 (452)
                      +...    ..+..   .+++.+|++++|+|+++.           ..+.+++.+..++...                   
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~  160 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ  160 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence            8642    22333   347899999999999886           3455544333333211                   


Q ss_pred             -------------------------h---------------------hhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH
Q psy14768        345 -------------------------C---------------------ILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC  378 (452)
Q Consensus       345 -------------------------~---------------------~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~  378 (452)
                                               .                     .......+|+++|+||+|+..    .+....+.
T Consensus       161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~----~~~l~~l~  236 (397)
T 1wxq_A          161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAAS----DEQIKRLV  236 (397)
T ss_dssp             CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSC----HHHHHHHH
T ss_pred             CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccc----hHHHHHHH
Confidence                                     0                     000002389999999999862    23334443


Q ss_pred             HHc---CCCEEEEecCCCCccHHHHHH
Q psy14768        379 HQY---NFMSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       379 ~~~---~~~~~~evSAktg~nv~~lf~  402 (452)
                      +.+   + ..++.+||+.+.++.++++
T Consensus       237 ~~~~~~~-~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          237 REEEKRG-YIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HHHHHTT-CEEEEECHHHHHHHHSCSS
T ss_pred             HHHhhcC-CcEEEEeccchhhHHHHHh
Confidence            333   4 3589999999999987654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.49  E-value=1.3e-14  Score=142.25  Aligned_cols=158  Identities=13%  Similarity=0.218  Sum_probs=86.3

Q ss_pred             cccEEEeeecccCCcceeeecccc-ccccccC--------CcceeeeEEEEEEeeecCCeeEEEEEEecCCc-------c
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN-KFLDNYK--------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ-------D  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~--------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~-------e  303 (452)
                      .++|+++|++|+|||||++++.+. .+.....        ++...+.....+..   ++....+.+|||+|+       +
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~---~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE---RGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC------CCEEEEEEEEC----------
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC---CCcccCcchhhhhhhhhhcCcHH
Confidence            478899999999999999998764 4433321        22222222222222   445678999999998       5


Q ss_pred             hhhhhhh-------hhhcC-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        304 RYICMSR-------VYYQN-------------SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       304 ~~~~~~~-------~~i~~-------------ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                      .+..+..       .+++.             +++++++.+.+. .+++.+..  ..+...     ....++++|+||+|
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-----~~~~~iilV~~K~D  166 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-----HNKVNIVPVIAKAD  166 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-----TTTSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-----HhcCCEEEEEEeCC
Confidence            5554443       33332             344555544432 23333331  223332     13479999999999


Q ss_pred             CCC-Cc--ccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        364 LPD-RQ--VEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       364 l~~-~~--~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +.. ++  ...+++.+++...++. |+++||+++ |++++|.++++.+..
T Consensus       167 l~~~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          167 TLTLKERERLKKRILDEIEEHNIK-IYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTTCC-CCCCC----------CHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCe-EEecCCccc-cccHHHHHHHHHhhc
Confidence            976 22  3356788889999876 999999999 999999999988864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.48  E-value=1.7e-13  Score=148.95  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccc--cc-----------ccc-----CCcceeeeEEEEEEeee--cCCeeEEEEEEe
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK--FL-----------DNY-----KNTVGVDFSTKLLSHKK--YGGRPVKLQIWD  298 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~--~~-----------~~~-----~~t~~~d~~~~~i~~~~--~~~~~~~l~l~D  298 (452)
                      ...+|+|+|..++|||||+++|+...  +.           .++     ..+++.......+.+..  .++..+.+.|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            34789999999999999999997421  11           000     11222222222333210  123448899999


Q ss_pred             cCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       299 taG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      |+|+..|...+..+++.+|++|+|+|++++...+....|......        ++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--------~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY--------KVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc--------CCCEEEEEeCCCccc
Confidence            999999998889999999999999999999887777666544332        489999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.48  E-value=9.5e-14  Score=150.74  Aligned_cols=114  Identities=14%  Similarity=0.218  Sum_probs=83.9

Q ss_pred             cccEEEeeecccCCcceeeecccc--ccc-----------ccc-----CCcceeeeEEEEEEeeecCCeeEEEEEEecCC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN--KFL-----------DNY-----KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG  301 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~--~~~-----------~~~-----~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG  301 (452)
                      ..+|+|+|.+|+|||||+++|+..  .+.           .++     ..+++.......+.+     ..+.+.||||+|
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDTPG   84 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-----EGHRVNIIDTPG   84 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-----TTEEEEEECCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-----CCeeEEEEECcC
Confidence            478999999999999999999852  110           000     112222222223333     357899999999


Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +..|...+..+++.+|++|+|+|++++.+++....|......        ++|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--------~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--------GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--------TCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--------CCCEEEEEECCCccc
Confidence            999988888999999999999999999998888777654333        489999999999864

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.46  E-value=8.6e-15  Score=146.76  Aligned_cols=159  Identities=15%  Similarity=0.134  Sum_probs=95.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc------cccCCcc----------------------eee--------------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL------DNYKNTV----------------------GVD--------------  276 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~------~~~~~t~----------------------~~d--------------  276 (452)
                      ...+|+++|.+|+|||||+|+|++..+.      .+..|+.                      +.+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3479999999999999999999997763      2222331                      100              


Q ss_pred             -------eEEEEEEeeecCCeeEEEEEEecCCcc-------------hhhhhhhhhhcCCCEE-EEEEeCCChhhHHHHH
Q psy14768        277 -------FSTKLLSHKKYGGRPVKLQIWDIAGQD-------------RYICMSRVYYQNSDGC-IIMFDLTNRKSFESVV  335 (452)
Q Consensus       277 -------~~~~~i~~~~~~~~~~~l~l~DtaG~e-------------~~~~~~~~~i~~ad~v-IlV~D~t~~~S~~~~~  335 (452)
                             .....+.+.  ......+.||||||..             .+..+...|+..++.+ ++|.|++....-++..
T Consensus       110 g~~~gi~~~~~~~~i~--~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~  187 (353)
T 2x2e_A          110 GTNKGISPVPINLRVY--SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  187 (353)
T ss_dssp             TTTTCCCCCCEEEEEE--ETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred             ccCCCcccCceEEEEe--cCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence                   000001110  1123568999999963             3445666777666654 4566766543333322


Q ss_pred             HHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHH--HHHHcCCCEEEEecCCCCccHHHHHHHHHH
Q psy14768        336 QWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEA--VCHQYNFMSWIEVSSKEHLMIEDSMNFLVD  406 (452)
Q Consensus       336 ~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~--~~~~~~~~~~~evSAktg~nv~~lf~~i~~  406 (452)
                      .+   +...    ...+.|+++|+||+|+.+ .....+..+.  +....++..++++||+++.|++++|+++..
T Consensus       188 ~i---~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KV---AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HH---HHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HH---HHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            23   3332    234689999999999976 2211222111  001123344688999999999999998876

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.44  E-value=1.9e-13  Score=131.63  Aligned_cols=120  Identities=14%  Similarity=0.133  Sum_probs=80.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhh-------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSR-------  310 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~-------  310 (452)
                      ..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+..     ..+.+.||||||++.+..+..       
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~l~iiDTpG~~~~~~~~~~~~~~i~  112 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-----AGFTLNIIDTPGLIEGGYINDMALNIIK  112 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-----TTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-----CCeEEEEEECCCCCCCccchHHHHHHHH
Confidence            4689999999999999999999986642 233333443443333333     456799999999977653222       


Q ss_pred             hh--hcCCCEEEEEEeCCChhhHHHH-HHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        311 VY--YQNSDGCIIMFDLTNRKSFESV-VQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       311 ~~--i~~ad~vIlV~D~t~~~S~~~~-~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      .+  ...+|++|+|||++.. ++... ..|+..+...+.  ....+|+++|+||+|+..
T Consensus       113 ~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~--~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          113 SFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG--KGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             HHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECCSCCC
T ss_pred             HHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC--cccccCEEEEEECcccCC
Confidence            11  3479999999998763 34333 356666655421  011269999999999975

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.43  E-value=4.8e-14  Score=143.91  Aligned_cols=156  Identities=17%  Similarity=0.282  Sum_probs=81.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-ccc-------CCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNY-------KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-----  306 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~-------~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-----  306 (452)
                      .++|+++|++|+|||||+|.+++..+. ...       .++++.+.....+..   .+....+.+|||+|+..+.     
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~---~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE---GGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---------CEEEEEEECC-----------
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec---CCcccceeeeechhhhhhccchhh
Confidence            477899999999999999999986552 211       223332222222222   3444578999999976531     


Q ss_pred             --hh------------------hhhhhcCCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        307 --CM------------------SRVYYQNSDGCIIMFDLTNR-KSFESVV-QWKHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       307 --~~------------------~~~~i~~ad~vIlV~D~t~~-~S~~~~~-~~~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                        .+                  ...++.++++.+++|+.... .++.... .|+..+..        ++++|+|+||+|+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~--------~v~iIlVinK~Dl  179 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------KVNIIPLIAKADT  179 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT--------TSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc--------cCcEEEEEEcccC
Confidence              11                  12234556655555555443 3444443 45555543        4899999999999


Q ss_pred             CC-CcccH--HHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        365 PD-RQVEI--NEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       365 ~~-~~~~~--e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      .. +++..  +.+.+++...++. ++++||+++.++.++|..+...
T Consensus       180 l~~~ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          180 LTPEECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCC-CCCCC-----------------
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhh
Confidence            76 33333  6677788888877 8999999999999988777653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.43  E-value=7.4e-14  Score=129.71  Aligned_cols=156  Identities=16%  Similarity=0.123  Sum_probs=96.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeee--------------EEEEEEee---ec----------CCeeE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF--------------STKLLSHK---KY----------GGRPV  292 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~--------------~~~~i~~~---~~----------~~~~~  292 (452)
                      ..+|+++|.+|+|||||+++|+...........+..++              ....+...   .+          ....+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            46899999999999999999986421111111111111              00111110   00          01235


Q ss_pred             EEEEEecCCcchhhhhhhhh-hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc
Q psy14768        293 KLQIWDIAGQDRYICMSRVY-YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE  370 (452)
Q Consensus       293 ~l~l~DtaG~e~~~~~~~~~-i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~  370 (452)
                      .+.+|||+|+-.    .+.+ ...++.+|+|+|+++....  ...+...  .        ..|++||+||+|+.+ ....
T Consensus       110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~--~--------~~~~iiv~NK~Dl~~~~~~~  173 (221)
T 2wsm_A          110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI--F--------RVADLIVINKVALAEAVGAD  173 (221)
T ss_dssp             SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH--H--------HTCSEEEEECGGGHHHHTCC
T ss_pred             CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh--h--------hcCCEEEEecccCCcchhhH
Confidence            788999999611    1111 1357899999999876421  1111111  1        278999999999864 2345


Q ss_pred             HHHHHHHHHHcC-CCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        371 INEIEAVCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       371 ~e~~~~~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      .+++.+++..++ ..+++++||++|.|++++|+++.+.+...
T Consensus       174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            666666666654 34689999999999999999999877544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=2.7e-12  Score=128.31  Aligned_cols=150  Identities=11%  Similarity=0.116  Sum_probs=95.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcch
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQDR  304 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e~  304 (452)
                      .++|+++|.||||||||+|++++..+.....+.++.+.....+.+   .+.               ...+.||||||+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~---~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~   78 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM---PDPRLDALAEIVKPERILPTTMEFVDIAGLVA   78 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC---CCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec---CCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence            368999999999999999999986654444443333322222333   332               25789999999987


Q ss_pred             hh----hhh---hhhhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHH-------------------------
Q psy14768        305 YI----CMS---RVYYQNSDGCIIMFDLTNR----------KSFESVVQWKHDLD-------------------------  342 (452)
Q Consensus       305 ~~----~~~---~~~i~~ad~vIlV~D~t~~----------~S~~~~~~~~~~i~-------------------------  342 (452)
                      +.    .+.   ..+++++|++++|+|+++.          ..++++..+..++.                         
T Consensus        79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~  158 (363)
T 1jal_A           79 GASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEA  158 (363)
T ss_dssp             THHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             cccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhH
Confidence            53    232   2358999999999999862          34555544333331                         


Q ss_pred             -----------hhh--------------------hhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        343 -----------SKC--------------------ILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       343 -----------~~~--------------------~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                                 ...                    .......+|+++|+||.|..- .....+.+++++...+.. ++.+|
T Consensus       159 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~-~i~~s  237 (363)
T 1jal_A          159 KFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV-VVPVC  237 (363)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE-EEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCC-EEEec
Confidence                       000                    011224599999999998642 234566777888777765 89999


Q ss_pred             CCC
Q psy14768        391 SKE  393 (452)
Q Consensus       391 Akt  393 (452)
                      |+.
T Consensus       238 A~~  240 (363)
T 1jal_A          238 AAI  240 (363)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.34  E-value=1.4e-14  Score=135.09  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=93.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeE------------EEEEEeeecCCee---------------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS------------TKLLSHKKYGGRP---------------  291 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~------------~~~i~~~~~~~~~---------------  291 (452)
                      ..++|+++|.+|||||||+++|+...+...+.++++.++.            ...+.+.  .+..               
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~l  114 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLN--TGKECHLDAHLVGHALEDL  114 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEE--CTTCSSCCHHHHHHHHTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEec--CCceEeccHHHHHHHHHHH
Confidence            3578999999999999999999976554444555555443            1222220  0111               


Q ss_pred             ----EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-
Q psy14768        292 ----VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-  366 (452)
Q Consensus       292 ----~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-  366 (452)
                          ..+.++|++|.-..   ...+-...+.++.++|+.+......  .....   .       ..|++||+||+|+.+ 
T Consensus       115 ~~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~-------~~~~iiv~NK~Dl~~~  179 (226)
T 2hf9_A          115 NLDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M-------KTADLIVINKIDLADA  179 (226)
T ss_dssp             CGGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H-------TTCSEEEEECGGGHHH
T ss_pred             hcCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhH---h-------hcCCEEEEeccccCch
Confidence                13444455442000   0011112344566666533211110  00000   1       267899999999865 


Q ss_pred             CcccHHHHHHHHHHcC-CCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        367 RQVEINEIEAVCHQYN-FMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       367 ~~~~~e~~~~~~~~~~-~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +....+++.+++..++ ..+++++||++|.|++++|+++.+.+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3356677777777653 3469999999999999999999887754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.34  E-value=1.1e-12  Score=145.38  Aligned_cols=118  Identities=13%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             cccEEEeeecccCCcceeeeccccc-cccc---------------cCCcceeeeEEEEEEee-----------ecCCeeE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-FLDN---------------YKNTVGVDFSTKLLSHK-----------KYGGRPV  292 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-~~~~---------------~~~t~~~d~~~~~i~~~-----------~~~~~~~  292 (452)
                      ..+|+|+|..|+|||||+++|+... .+..               ...+++.......+.+.           ..++..+
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   98 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence            4689999999999999999998631 1110               11112222212222221           0134578


Q ss_pred             EEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        293 KLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       293 ~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      .+.||||+|+.+|...+..+++.+|++|+|||++++.+++....|.......        +|+++|+||+|+.
T Consensus        99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~--------~p~ilviNK~D~~  163 (842)
T 1n0u_A           99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGER--------IKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTT--------CEEEEEEECHHHH
T ss_pred             eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC--------CCeEEEEECCCcc
Confidence            9999999999999999999999999999999999999999987777655443        8999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.32  E-value=2.9e-12  Score=128.65  Aligned_cols=167  Identities=13%  Similarity=0.112  Sum_probs=101.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-----------cC-----CeeEEEEEEecCCcch
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-----------YG-----GRPVKLQIWDIAGQDR  304 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-----------~~-----~~~~~l~l~DtaG~e~  304 (452)
                      ++|+++|.||+|||||+|++++........+.++.+.......+..           ..     .....+.+|||||+.+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999997543222222222111111112200           00     1245789999999876


Q ss_pred             hh----hhh---hhhhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHH-------------------------
Q psy14768        305 YI----CMS---RVYYQNSDGCIIMFDLTNR----------KSFESVVQWKHDLD-------------------------  342 (452)
Q Consensus       305 ~~----~~~---~~~i~~ad~vIlV~D~t~~----------~S~~~~~~~~~~i~-------------------------  342 (452)
                      +.    .+.   ...++++|++++|+|+++.          ..+.++..+..++.                         
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            53    222   2358999999999999862          22333332222220                         


Q ss_pred             --------------hhh----------------hhcCCCCCcEEEEEECCCC--CCC--cccHHHHHHHHHHcCCCEEEE
Q psy14768        343 --------------SKC----------------ILDNGAMLPCLLLASKCDL--PDR--QVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       343 --------------~~~----------------~~~~~~~~piilV~NK~Dl--~~~--~~~~e~~~~~~~~~~~~~~~e  388 (452)
                                    ...                .+.....+|+++|+||.|.  .+.  ....+.+++++...+.. +++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~-vv~  240 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE-VVV  240 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE-EEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe-EEE
Confidence                          000                0001234899999999973  222  44567788888887754 999


Q ss_pred             ecCCCCccHHHHHHHHHHHH
Q psy14768        389 VSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i  408 (452)
                      +||+...++.++++.-....
T Consensus       241 iSAk~E~el~eL~~~~~~~~  260 (368)
T 2dby_A          241 VSARLEAELAELSGEEAREL  260 (368)
T ss_dssp             ECHHHHHHHHTSCHHHHHHH
T ss_pred             eechhHHHHHHhchHHHHHH
Confidence            99999888887776544333

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.28  E-value=3.5e-13  Score=134.83  Aligned_cols=105  Identities=9%  Similarity=-0.003  Sum_probs=63.5

Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCccc
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVE  370 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~  370 (452)
                      .+.+.|+||+|....   .......+|++++|+|++++...+.+..   .+         ...|.++|+||+|+.+....
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---------l~~~~ivVlNK~Dl~~~~~~  230 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---------IEMADLVAVTKSDGDLIVPA  230 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---------HhcCCEEEEeeecCCCchhH
Confidence            456889999996421   2344679999999999987643332211   11         13688999999998641100


Q ss_pred             HHHHHHHHHHc---------CCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        371 INEIEAVCHQY---------NFMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       371 ~e~~~~~~~~~---------~~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      ......+...+         ...+++++||++|.|+++++++|.+.+..
T Consensus       231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            11122232211         13458999999999999999999887643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.27  E-value=1.4e-12  Score=130.82  Aligned_cols=105  Identities=9%  Similarity=0.044  Sum_probs=70.7

Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc-
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV-  369 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~-  369 (452)
                      .+.+.||||+|...   .....+..+|++|+|+|++....++.+..            ....+|++||+||+|+..... 
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------------~~~~~p~ivVlNK~Dl~~~~~~  235 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------------GVLELADIVVVNKADGEHHKEA  235 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------------TSGGGCSEEEEECCCGGGHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------------hHhhcCCEEEEECCCCcChhHH
Confidence            46789999999532   22344689999999999877654433221            012369999999999864111 


Q ss_pred             --cHHHHHHHHHHc-----C-CCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        370 --EINEIEAVCHQY-----N-FMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       370 --~~e~~~~~~~~~-----~-~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                        ..++.......+     + ..+++++||++|.||+++++++.+.+..
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              111222222222     1 2458999999999999999999988765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.26  E-value=1.4e-11  Score=130.09  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=84.8

Q ss_pred             ccEEEeeecccCCcceeeeccccc-----------------cc-----cccCCcceeeeEEEEEEeeecCCeeEEEEEEe
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-----------------FL-----DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD  298 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-----------------~~-----~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~D  298 (452)
                      =+|+|+|..++|||||..+++-..                 ..     .+..-++++......+.+     +.+.++|+|
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-----~~~~iNlID  106 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-----RDRVVNLLD  106 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-----TTEEEEEEC
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-----CCEEEEEEe
Confidence            468999999999999999986210                 00     111123333333333433     557789999


Q ss_pred             cCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        299 IAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       299 taG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      |||+..|..-....++-+|++|+|+|+.++..-|....|....+..        +|+++++||+|...
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~--------lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA--------TPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTT--------CCEEEEEECTTSCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhC--------CceEEEEecccchh
Confidence            9999999988899999999999999999999888888887776665        99999999999754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.25  E-value=3.5e-12  Score=134.86  Aligned_cols=121  Identities=18%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccc---cccCCcceeeeEEEE-----------------EEeeecC--C-----e-
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKL-----------------LSHKKYG--G-----R-  290 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~---~~~~~t~~~d~~~~~-----------------i~~~~~~--~-----~-  290 (452)
                      ...+|+|+|.+|+|||||+|+|++..+.   ....+++........                 ..+..+.  +     . 
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4589999999999999999999997762   444454422110000                 0000000  0     0 


Q ss_pred             ---------eEEEEEEecCCcch-----------hhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC
Q psy14768        291 ---------PVKLQIWDIAGQDR-----------YICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG  350 (452)
Q Consensus       291 ---------~~~l~l~DtaG~e~-----------~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~  350 (452)
                               ...+.||||+|+..           |..+...++..+|++|+|+|+++....+....|+..+...      
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~------  217 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH------  217 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC------
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc------
Confidence                     02588999999864           4556677889999999999998864445555566555433      


Q ss_pred             CCCcEEEEEECCCCCC
Q psy14768        351 AMLPCLLLASKCDLPD  366 (452)
Q Consensus       351 ~~~piilV~NK~Dl~~  366 (452)
                       ..|+++|+||+|+..
T Consensus       218 -~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 -EDKIRVVLNKADMVE  232 (550)
T ss_dssp             -GGGEEEEEECGGGSC
T ss_pred             -CCCEEEEEECCCccC
Confidence             489999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.18  E-value=7.9e-12  Score=124.55  Aligned_cols=104  Identities=14%  Similarity=0.084  Sum_probs=66.5

Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC-cc
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR-QV  369 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~-~~  369 (452)
                      .+.+.||||+|...+..   .....+|++|+|+|++.+..++.+..   .. .        ++|.++|+||+|+... ..
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-~--------~~p~ivv~NK~Dl~~~~~~  212 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-M--------EVADLIVINKDDGDNHTNV  212 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-H--------HHCSEEEECCCCTTCHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-h--------cccCEEEEECCCCCChHHH
Confidence            46789999999754432   24689999999999976543221111   00 1        2688999999998751 11


Q ss_pred             c--HHHHHHHHHHcC------CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        370 E--INEIEAVCHQYN------FMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       370 ~--~e~~~~~~~~~~------~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      .  .++.......++      ..+++.+||++|.|++++++++.+.+.
T Consensus       213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1  112222222333      356899999999999999999988765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.18  E-value=4e-11  Score=117.44  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=79.1

Q ss_pred             cchhhhhhhhhhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc-HHHHHHHH
Q psy14768        302 QDRYICMSRVYYQNSDGCIIMFDLTNRK-SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE-INEIEAVC  378 (452)
Q Consensus       302 ~e~~~~~~~~~i~~ad~vIlV~D~t~~~-S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~-~e~~~~~~  378 (452)
                      ++++..+...+++++|++|+|||++++. +++.+..|+..++..       ++|++||+||+|+.+ .++. .++..++.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-------~~~~ilV~NK~DL~~~~~v~~~~~~~~~~  138 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-------KVEPVIVFNKIDLLNEEEKKELERWISIY  138 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-------CCCEEEEEEcccCCCccccHHHHHHHHHH
Confidence            7788888888999999999999999986 899889998877653       599999999999976 2222 44556667


Q ss_pred             HHcCCCEEEEecCCCCccHHHHHHHHH
Q psy14768        379 HQYNFMSWIEVSSKEHLMIEDSMNFLV  405 (452)
Q Consensus       379 ~~~~~~~~~evSAktg~nv~~lf~~i~  405 (452)
                      +..++. ++++||++|.|++++|+.+.
T Consensus       139 ~~~g~~-~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          139 RDAGYD-VLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred             HHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence            777774 99999999999999998754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.17  E-value=1.4e-11  Score=133.55  Aligned_cols=159  Identities=14%  Similarity=0.148  Sum_probs=98.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCccee------------------------------------------
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV------------------------------------------  275 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~------------------------------------------  275 (452)
                      ....+|+++|.+++|||||+|++++..+........+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            34579999999999999999999987663221111110                                          


Q ss_pred             ---------eeEEEEEEeeecCCeeEEEEEEecCCcch-------------hhhhhhhhh-cCCCEEEEEEeCCChhhHH
Q psy14768        276 ---------DFSTKLLSHKKYGGRPVKLQIWDIAGQDR-------------YICMSRVYY-QNSDGCIIMFDLTNRKSFE  332 (452)
Q Consensus       276 ---------d~~~~~i~~~~~~~~~~~l~l~DtaG~e~-------------~~~~~~~~i-~~ad~vIlV~D~t~~~S~~  332 (452)
                               +.....+..    .....+.|+||||...             ...+...|+ ..+|++++|+|+++....+
T Consensus       129 ~g~~~~is~~~i~l~I~~----P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~  204 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYS----PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS  204 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEE----TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSC
T ss_pred             cCCCCcccccceEEEEec----CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchh
Confidence                     111111111    1123478999999543             223334444 5789999999999875555


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH---HHHHcCCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        333 SVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA---VCHQYNFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       333 ~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~---~~~~~~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      +...+...+..       .+.|+|+|+||+|+.+.......+..   +....++.+++.+||++|.|++++++.+.+.
T Consensus       205 d~l~ll~~L~~-------~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          205 DALKIAKEVDP-------QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHHHCT-------TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHHHh-------cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            54333333332       35899999999999862211111111   0001244456889999999999999988763

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.16  E-value=1e-10  Score=117.42  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=95.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hh---hhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CM---SRVY  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~---~~~~  312 (452)
                      ..+|+++|.||||||||+|++++........+.++.+...-.+.+   .+  ..++|+||||...-.    .+   ....
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~---~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY---KG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE---TT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe---CC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            468999999999999999999997766666788888877766666   44  567888999964311    11   1235


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---------CcccHHHHHHHHHHcCC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---------RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---------~~~~~e~~~~~~~~~~~  383 (452)
                      +++||++++|+|++++.  .+.+....++....  .....+|.+++.||+|...         .....++++.+...+.+
T Consensus       147 i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPL--HHKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             HHHCSEEEEEEETTSHH--HHHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             HHhcCccccccccCccH--HHHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            78999999999999874  33334444444331  1124578889999999743         34566777777776654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.16  E-value=3.3e-11  Score=114.78  Aligned_cols=112  Identities=13%  Similarity=-0.013  Sum_probs=70.0

Q ss_pred             EEEEEEecCCcchhhhhhh------hhhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        292 VKLQIWDIAGQDRYICMSR------VYYQNSDGCIIMFDLTNRKSFESVVQWK-HDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~------~~i~~ad~vIlV~D~t~~~S~~~~~~~~-~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                      +.+.||||+|+..+.....      ..+.+ +++|+++|+....+..+..... ......    ...++|+++|+||+|+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~iv~NK~D~  183 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID----LRLGATTIPALNKVDL  183 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH----HHHTSCEEEEECCGGG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh----cccCCCeEEEEecccc
Confidence            5799999999876543322      24566 8999999986544433332211 111111    1124899999999998


Q ss_pred             CCCcccHHHHHHH----------------------------HHHcCC-CEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        365 PDRQVEINEIEAV----------------------------CHQYNF-MSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       365 ~~~~~~~e~~~~~----------------------------~~~~~~-~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      .... ..+++.++                            .+.++. .+++++||+++.|++++|+++.+.+.
T Consensus       184 ~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          184 LSEE-EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             CCHH-HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccc-cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            7511 01111111                            234333 25899999999999999999987764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.12  E-value=1.9e-11  Score=131.59  Aligned_cols=112  Identities=14%  Similarity=0.219  Sum_probs=84.1

Q ss_pred             cEEEeeecccCCcceeeeccccc-cc-----c-------ccC-----CcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK-FL-----D-------NYK-----NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~-~~-----~-------~~~-----~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      +|+|+|..++|||||..+++... .+     .       ++.     -+++....  .+.+   ..+.+.++|+||||+.
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~--~~~~---~~~~~~iNlIDTPGH~   78 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTG--ITSF---QWENTKVNIIDTPGHM   78 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCC--CCCC---BCSSCBCCCEECCCSS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEee--eEEE---EECCEEEEEEECCCcH
Confidence            68999999999999999887311 00     0       000     02222222  2222   4456678899999999


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      .|.......++-+|++|+|+|+.++..-|....|.......        +|.|+++||+|...
T Consensus        79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~--------lp~i~~INKmDr~~  133 (638)
T 3j25_A           79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG--------IPTIFFINKIDQNG  133 (638)
T ss_dssp             STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT--------CSCEECCEECCSSS
T ss_pred             HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC--------CCeEEEEecccccc
Confidence            99998899999999999999999998878777777777666        89999999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.02  E-value=1.5e-09  Score=118.20  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             ccEEEeeecccCCcceeeeccccccc------c------------ccCCcceeeeEEEEEEeee--cCCeeEEEEEEecC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL------D------------NYKNTVGVDFSTKLLSHKK--YGGRPVKLQIWDIA  300 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~------~------------~~~~t~~~d~~~~~i~~~~--~~~~~~~l~l~Dta  300 (452)
                      =+|+|+|..++|||||..+|+...-.      .            +..-++++......+.+..  .+.+.+.++|+|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            36899999999999999998731100      0            1111222222223333311  11236889999999


Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      |+-.|..-....++-+|++|+|+|+.++..-|....|.......        +|+++|+||.|..
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~--------lp~i~~iNKiDr~  150 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG--------VPRIVYVNKMDRQ  150 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT--------CCEEEEEECSSST
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC--------CCeEEEEcccccc
Confidence            99999988889999999999999999999888888888887776        9999999999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.97  E-value=5e-10  Score=111.29  Aligned_cols=104  Identities=8%  Similarity=0.012  Sum_probs=64.5

Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV  369 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~  369 (452)
                      .+.+.|+||+|...-.   ......+|++++|+|+..+...+.+..+   +.         ..+.++|+||+|+.. ...
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~~~~  211 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDGERR  211 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCCHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCchhH
Confidence            4678899999975321   2345789999999998754322211111   11         146677889999754 222


Q ss_pred             cHHHHHHHHHHc---C------CCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        370 EINEIEAVCHQY---N------FMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       370 ~~e~~~~~~~~~---~------~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      .....+.+...+   .      ..+++.+||+++.|++++++.+.+...
T Consensus       212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222233333221   2      345889999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.84  E-value=1.6e-09  Score=99.19  Aligned_cols=110  Identities=9%  Similarity=0.038  Sum_probs=67.1

Q ss_pred             ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcC-CCCCcEEEEEECC-CCCCCcccHHHHH
Q psy14768        298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDN-GAMLPCLLLASKC-DLPDRQVEINEIE  375 (452)
Q Consensus       298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~-~~~~piilV~NK~-Dl~~~~~~~e~~~  375 (452)
                      |.+||++++.+|..||+++|++|+|+|.+|..-++ .+.-+.++........ ..+.|++|++||. |+.. .....++.
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams~~EI~  185 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLA  185 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCCHHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCCHHHHH
Confidence            45689999999999999999999999999885444 2222222222211111 2578999999995 6754 33333333


Q ss_pred             HHHH----HcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        376 AVCH----QYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       376 ~~~~----~~~~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +...    ...+. ++.|||++|+|+.+.++|+...+..
T Consensus       186 e~L~L~~l~R~W~-Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          186 HELHLNLLNHPWL-VQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             HHTTGGGGCSCEE-EEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             HHcCCcCCCCCEE-EEEeECCCCcCHHHHHHHHHHHHHh
Confidence            3221    11222 5899999999999999999876643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.83  E-value=1.2e-09  Score=110.15  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=52.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQD  303 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e  303 (452)
                      ...+|+++|.+|||||||+|++.+..+.....++++.+.....+.+   .+.               ...+.+|||||+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v---~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV---PDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC---CCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE---CCccceeeccccCcccccccccEEEECCCcc
Confidence            3579999999999999999999987766666677776665555554   322               2358999999987


Q ss_pred             hhhh-------hhhhhhcCCCEEEEEEeCCChh
Q psy14768        304 RYIC-------MSRVYYQNSDGCIIMFDLTNRK  329 (452)
Q Consensus       304 ~~~~-------~~~~~i~~ad~vIlV~D~t~~~  329 (452)
                      ++..       ....+++++|++++|+|+++..
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            6543       3356789999999999998643

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.79  E-value=3.3e-09  Score=98.66  Aligned_cols=44  Identities=34%  Similarity=0.691  Sum_probs=28.8

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      .+.+||+|||++|||||||++||+++.|...|.+|+|.+|..+.
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~   54 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT   54 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEE
Confidence            34589999999999999999999999999889999988776533

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.70  E-value=5.7e-08  Score=98.06  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             cccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCe---------------eEEEEEEecCCcc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGR---------------PVKLQIWDIAGQD  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~---------------~~~l~l~DtaG~e  303 (452)
                      ..+++++|.+|+|||||+|.+++... .....|+++.+...-.+.+   .+.               ...+.+||++|..
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v---~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV---PDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE---CCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee---CCcchhhhhhhcccccccCcceEEEeccccc
Confidence            47899999999999999999998666 6666676666665555555   331               1358899999954


Q ss_pred             h-------hhhhhhhhhcCCCEEEEEEeCCC
Q psy14768        304 R-------YICMSRVYYQNSDGCIIMFDLTN  327 (452)
Q Consensus       304 ~-------~~~~~~~~i~~ad~vIlV~D~t~  327 (452)
                      .       +.......++.+|++++|+|+.+
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3       22233456789999999999874

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.69  E-value=4.4e-08  Score=98.39  Aligned_cols=98  Identities=13%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV---  377 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~---  377 (452)
                      .++.|..+...+++.+|++|+|+|++++.     ..|...+.+..     .++|+++|+||+|+.+.....+...+|   
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~  124 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRY  124 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence            46789999999999999999999999853     45666666542     368999999999997644444444444   


Q ss_pred             -HHHcCCC--EEEEecCCCCccHHHHHHHHHHHH
Q psy14768        378 -CHQYNFM--SWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       378 -~~~~~~~--~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                       ++..++.  .++++||++|.|++++++.+.+..
T Consensus       125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence             5666762  589999999999999999987643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.64  E-value=1.1e-08  Score=97.91  Aligned_cols=108  Identities=10%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHH---HHHHHhhhhhcCCCCCcEEEEEEC-CCCCCCcccHHH
Q psy14768        298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQW---KHDLDSKCILDNGAMLPCLLLASK-CDLPDRQVEINE  373 (452)
Q Consensus       298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~---~~~i~~~~~~~~~~~~piilV~NK-~Dl~~~~~~~e~  373 (452)
                      |.+||++++.+|..||+++|++|+|+|++|...++.....   ...+...   ....+.|++|++|| .|+.. .....+
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~---~~l~~apLLVfANKkQDlp~-Ams~~E  268 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPA---FGSSGRPLLVLSCISQGDVK-RMPCFY  268 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHH---HHCTTCCEEEEEEESSTTSC-BCCHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcch---hhcCCCeEEEEeCCcccccC-CCCHHH
Confidence            3578999999999999999999999999998654422211   1122111   01256899999997 58864 233333


Q ss_pred             HHHHHH----HcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        374 IEAVCH----QYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       374 ~~~~~~----~~~~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +.+...    ...+. +..|||++|+|+.+.++|+.+.+..
T Consensus       269 I~e~L~L~~l~r~W~-Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          269 LAHELHLNLLNHPWL-VQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHHHTTGGGGCSCEE-EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHcCCccCCCcEE-EEecccCCCcCHHHHHHHHHHHHHh
Confidence            332221    11222 5899999999999999999987643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.56  E-value=1e-07  Score=95.67  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             CcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---
Q psy14768        301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV---  377 (452)
Q Consensus       301 G~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~---  377 (452)
                      .++.|+++...+++.++++|+|+|+++..+     .|...+.+..     .++|+++|+||+|+.+.....+...+|   
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~  126 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR  126 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence            588999999999999999999999998763     3444444441     368999999999998644444444444   


Q ss_pred             -HHHcCC--CEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        378 -CHQYNF--MSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       378 -~~~~~~--~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                       .+..++  ..++++||++|.|++++++.+.+..
T Consensus       127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence             555666  3589999999999999999987654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.44  E-value=1.1e-07  Score=85.57  Aligned_cols=37  Identities=19%  Similarity=0.438  Sum_probs=33.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      ...+||+|||++|||||||++||+++.|...+.+|.+
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~   54 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG   54 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            4458999999999999999999999999988888854

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.41  E-value=1.3e-07  Score=86.27  Aligned_cols=48  Identities=38%  Similarity=0.639  Sum_probs=32.8

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ....+||+|||++|||||||+++|++..|...+.+|+|.++....+..
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~   73 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI   73 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE
Confidence            355699999999999999999999999998889999999987766543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.39  E-value=3.8e-07  Score=82.00  Aligned_cols=47  Identities=28%  Similarity=0.580  Sum_probs=36.5

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ...+||+|+|++|||||||+++|++..|...+.+++|.++....+..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~   65 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI   65 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE
Confidence            45699999999999999999999999999888899998887665443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.34  E-value=2.1e-07  Score=82.22  Aligned_cols=46  Identities=41%  Similarity=0.668  Sum_probs=40.4

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ..+||+++|++|||||||+++|+++.|...+.+|+|.++....+..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~   50 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITL   50 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEe
Confidence            4589999999999999999999999998788899998887766554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.32  E-value=5.5e-07  Score=80.95  Aligned_cols=48  Identities=40%  Similarity=0.713  Sum_probs=41.3

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .....+||+|||++|||||||+++|++..|...+.+++|.++..+.+.
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~   68 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM   68 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence            345679999999999999999999999999988889998888765543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.32  E-value=3.1e-07  Score=82.75  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCC-CCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~-~~~~~~~~~~~  146 (452)
                      ...+||+|||++|||||||+++|++..|.. .+.+|+|....
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~   56 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE   56 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE
Confidence            445899999999999999999999999997 88999985443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.31  E-value=5.9e-07  Score=83.07  Aligned_cols=48  Identities=40%  Similarity=0.681  Sum_probs=36.4

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ....+||+|+|++|||||||+++|++..|...+.+|+|.++....+..
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~   57 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI   57 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE
Confidence            356799999999999999999999999999888999999987765543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.30  E-value=8.4e-07  Score=80.67  Aligned_cols=48  Identities=33%  Similarity=0.659  Sum_probs=41.9

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .+..+||+|+|++|||||||+++|.+..|...+.+|+|.++....+..
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~   52 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL   52 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE
Confidence            355689999999999999999999999999899999999987665543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.30  E-value=2.3e-07  Score=96.51  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=87.5

Q ss_pred             CcccEEEeeecccCCcceeeecc------cccc-cccc---CCcc-----------eeeeEEEEEE----------eeec
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFV------QNKF-LDNY---KNTV-----------GVDFSTKLLS----------HKKY  287 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~------~~~~-~~~~---~~t~-----------~~d~~~~~i~----------~~~~  287 (452)
                      ....|+++|.+|+||||+++++.      +.+. +.+.   .+..           +.++......          +..+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999998      3322 1111   1100           1111110000          0000


Q ss_pred             CCeeEEEEEEecCCcchhh-hhhh---hh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcE-EEEEE
Q psy14768        288 GGRPVKLQIWDIAGQDRYI-CMSR---VY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC-LLLAS  360 (452)
Q Consensus       288 ~~~~~~l~l~DtaG~e~~~-~~~~---~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pi-ilV~N  360 (452)
                      ....+.+.||||+|..... .++.   .+  +..+|.+++|+|++....  .+.. ...+...        +|+ +||+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~-a~~~~~~--------~~i~gvVlN  248 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQ-AKAFKDK--------VDVASVIVT  248 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHH-HHHHHHH--------HCCCCEEEE
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHH-HHHHHhh--------cCceEEEEe
Confidence            0134678999999975321 1111   11  237899999999988643  2222 2233333        575 89999


Q ss_pred             CCCCCCCcccHHHHHHHHHHcCCC-----------------EEEEecCCCCcc-HHHHHHHHHHH
Q psy14768        361 KCDLPDRQVEINEIEAVCHQYNFM-----------------SWIEVSSKEHLM-IEDSMNFLVDR  407 (452)
Q Consensus       361 K~Dl~~~~~~~e~~~~~~~~~~~~-----------------~~~evSAktg~n-v~~lf~~i~~~  407 (452)
                      |+|...+.   ..+..+...++.+                 +.+++|+..|.+ +.++++++.+.
T Consensus       249 K~D~~~~~---g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKG---GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCC---THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccch---HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99986421   1122233333322                 225689999999 99999988765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.29  E-value=2.8e-08  Score=99.83  Aligned_cols=136  Identities=12%  Similarity=0.108  Sum_probs=83.1

Q ss_pred             cccEEEeeecccCCcceeeecccc------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh----h
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM----S  309 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~----~  309 (452)
                      ..+++++|.+|+|||||+|++++.      .......++++.+....  ..   +..   +.++||||......+    .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~--~~---~~~---~~liDtPG~~~~~~~~~~l~  233 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI--PL---ESG---ATLYDTPGIINHHQMAHFVD  233 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE--EC---STT---CEEEECCSCCCCSSGGGGSC
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE--Ee---CCC---eEEEeCCCcCcHHHHHHHHh
Confidence            358999999999999999999975      34445556666554332  22   222   678899996432211    1


Q ss_pred             ---hhhh---cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC
Q psy14768        310 ---RVYY---QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF  383 (452)
Q Consensus       310 ---~~~i---~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~  383 (452)
                         ...+   +..|.+++++|......+..+..    +...    ...+.|+++++||.|...........+.+.+.++.
T Consensus       234 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l----~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~  305 (369)
T 3ec1_A          234 ARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYI----KGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE  305 (369)
T ss_dssp             TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEE----ESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred             HHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEc----cCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence               1122   67899999999854321112111    1111    23458999999999987643344455566666665


Q ss_pred             CEEEEecCC
Q psy14768        384 MSWIEVSSK  392 (452)
Q Consensus       384 ~~~~evSAk  392 (452)
                      . +...++.
T Consensus       306 ~-l~p~~~~  313 (369)
T 3ec1_A          306 L-LSPPSKR  313 (369)
T ss_dssp             T-BCSSCGG
T ss_pred             c-cCCCCch
Confidence            4 4444443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.29  E-value=3e-07  Score=81.21  Aligned_cols=48  Identities=40%  Similarity=0.706  Sum_probs=38.9

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ....+||+++|++|||||||+++|++..+...+.++++.++....+..
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   53 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI   53 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE
Confidence            456799999999999999999999999999889999988887666543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.28  E-value=8.6e-07  Score=79.44  Aligned_cols=46  Identities=37%  Similarity=0.728  Sum_probs=40.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +..+||+|||++|||||||+++|++..|...+.+++|.++....+.
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   65 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVY   65 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEE
Confidence            4569999999999999999999999999888899999888765543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.28  E-value=2.6e-07  Score=83.17  Aligned_cols=48  Identities=35%  Similarity=0.706  Sum_probs=42.3

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ..++.+||+|+|++|||||||+++|++..|...+.+++|.++....+.
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   66 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY   66 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEE
Confidence            446679999999999999999999999999988999999888876654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.26  E-value=1.4e-06  Score=76.84  Aligned_cols=45  Identities=11%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .++|+++|++|||||||+++|++..|...+.++++.++....+..
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   52 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV   52 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe
Confidence            479999999999999999999999999888888877776554433

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.25  E-value=5.5e-07  Score=80.87  Aligned_cols=47  Identities=30%  Similarity=0.568  Sum_probs=41.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeecc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK  153 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (452)
                      ..+||+++|++|||||||+++|++..|...+.+|+|.++....+...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~   52 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLN   52 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEec
Confidence            45899999999999999999999999998899999998887765544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.25  E-value=9.4e-07  Score=80.66  Aligned_cols=47  Identities=38%  Similarity=0.596  Sum_probs=41.4

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .++.+||+|||++|||||||+++|++..|...+.+|+|.++..+.+.
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~   69 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE   69 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence            35679999999999999999999999999988999999888766554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.25  E-value=5.7e-07  Score=80.68  Aligned_cols=39  Identities=21%  Similarity=0.350  Sum_probs=32.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhcc-CCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~-~~~~~~~~~~~~~  145 (452)
                      ..+||+++|++|||||||+++|++.. |...+.+|+|...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~   59 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI   59 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE
Confidence            34899999999999999999999988 6677888887443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.25  E-value=9.3e-07  Score=77.62  Aligned_cols=44  Identities=18%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+||++||++|||||||+|+|++..+...+.+++++++....+.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~   46 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFE   46 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEE
Confidence            37999999999999999999999888766667777776655544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.25  E-value=6.3e-07  Score=80.44  Aligned_cols=48  Identities=33%  Similarity=0.682  Sum_probs=41.9

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ....+||+|+|++|||||||+++|++..+...+.++++.++....+..
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   60 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL   60 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE
Confidence            356799999999999999999999999999889999998887666544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.24  E-value=6.8e-07  Score=80.55  Aligned_cols=46  Identities=39%  Similarity=0.696  Sum_probs=33.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+|+|++|||||||+++|+++.|...+.+++|.++....+.
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~   69 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE   69 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEE
Confidence            4568999999999999999999999999888899999888766654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.24  E-value=8e-07  Score=80.97  Aligned_cols=47  Identities=40%  Similarity=0.761  Sum_probs=40.4

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ...+||+|+|++|||||||+++|++..|...+.+|++.++....+..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   64 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI   64 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE
Confidence            34589999999999999999999999999889999999987766554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.23  E-value=1.4e-06  Score=76.70  Aligned_cols=48  Identities=31%  Similarity=0.713  Sum_probs=41.3

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .....+||+++|++|||||||+++|+++.+...+.+|+|.++..+.+.
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   58 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE   58 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEE
Confidence            345679999999999999999999999999888889998888766544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.23  E-value=9.4e-07  Score=78.61  Aligned_cols=48  Identities=33%  Similarity=0.712  Sum_probs=41.3

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .++.+||+++|++|||||||+++|+++.|...+.++++.++....+..
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   54 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV   54 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE
Confidence            356799999999999999999999999999888999988876665443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.22  E-value=2e-06  Score=83.08  Aligned_cols=99  Identities=10%  Similarity=-0.020  Sum_probs=68.1

Q ss_pred             ecCCcc-hhhhhhhhhhcCCCEEEEEEeCCChhhHHH--HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHH
Q psy14768        298 DIAGQD-RYICMSRVYYQNSDGCIIMFDLTNRKSFES--VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEI  374 (452)
Q Consensus       298 DtaG~e-~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~--~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~  374 (452)
                      +.||+. +........++++|++|.|+|+.++.+..+  +..|+            .++|+++|+||+|+.+.. ..+..
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~~~-~~~~~   71 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKADAA-VTQQW   71 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSCHH-HHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCCHH-HHHHH
Confidence            566754 444455677899999999999999987653  33332            348999999999997511 11222


Q ss_pred             HHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        375 EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       375 ~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      .++.+..++. ++++||+++.+++++++.+.+.+..
T Consensus        72 ~~~~~~~g~~-~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           72 KEHFENQGIR-SLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHTTTCC-EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHhcCCc-EEEEECCCcccHHHHHHHHHHHHHH
Confidence            3333444664 8999999999999999988777654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.22  E-value=1.3e-06  Score=78.76  Aligned_cols=47  Identities=36%  Similarity=0.670  Sum_probs=41.3

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+..+||+|||++|||||||+++|++..|...+.+|+|.++....+.
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~   72 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ   72 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE
Confidence            35578999999999999999999999999988999999888766554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.21  E-value=5.8e-07  Score=82.75  Aligned_cols=41  Identities=24%  Similarity=0.443  Sum_probs=36.2

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||+|||++|||||||++||+++.|...+.+|++.++.
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~   65 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT   65 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence            34589999999999999999999999999889999987774

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.21  E-value=2.9e-07  Score=81.88  Aligned_cols=46  Identities=35%  Similarity=0.689  Sum_probs=25.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +..+||+++|++|||||||+++|++..|...+.+|+|.++....+.
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~   51 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE   51 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEE
Confidence            4568999999999999999999999999888899999888765544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.20  E-value=6.4e-07  Score=81.38  Aligned_cols=47  Identities=32%  Similarity=0.729  Sum_probs=30.3

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ....+||+|+|++|||||||+++|+++.|...+.+|+|.++....+.
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~   68 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN   68 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEE
Confidence            35679999999999999999999999999988899999888766554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.20  E-value=1.2e-06  Score=77.24  Aligned_cols=47  Identities=43%  Similarity=0.793  Sum_probs=38.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ...+||+++|++|||||||+++|++..|...+.+++|.++....+..
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   52 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV   52 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEE
Confidence            34689999999999999999999999999889999999887776554

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.20  E-value=6.7e-07  Score=81.00  Aligned_cols=46  Identities=39%  Similarity=0.691  Sum_probs=30.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+|+|++|||||||+++|+++.|...+.+++|.++....+.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   71 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI   71 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEE
Confidence            3458999999999999999999999999888889999888766544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.18  E-value=2.2e-06  Score=85.99  Aligned_cols=51  Identities=20%  Similarity=0.386  Sum_probs=37.0

Q ss_pred             CCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       351 ~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ...|++++.||+|...    .++.+.+.   ....++++|+..+.|++++.+.+.+.+
T Consensus       248 ~~~p~i~v~nKid~~~----~eele~l~---~~~~~~~is~~~e~gLd~Li~~~y~~L  298 (376)
T 4a9a_A          248 RYMPAIYVLNKIDSLS----IEELELLY---RIPNAVPISSGQDWNLDELLQVMWDRL  298 (376)
T ss_dssp             EEECEEEEEECGGGSC----HHHHHHHT---TSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hccceEEEEecccccC----HHHHHHHh---cccchhhhhhhhcccchhHHHHHHHHc
Confidence            4489999999999753    33433332   233478999999999999988776655

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.17  E-value=2.1e-06  Score=74.61  Aligned_cols=46  Identities=37%  Similarity=0.769  Sum_probs=40.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+.+||+++|++|||||||+++|++..+...+.+|+|.++....+.
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~   48 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ   48 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEE
Confidence            3468999999999999999999999999988999999988766554

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.17  E-value=4.6e-07  Score=82.09  Aligned_cols=47  Identities=34%  Similarity=0.712  Sum_probs=41.2

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ...+||+|+|++|||||||+|+|+++.|...+.++++.++....+..
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   77 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL   77 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE
Confidence            45699999999999999999999999999888899998887766544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.15  E-value=1.4e-06  Score=88.58  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=60.5

Q ss_pred             ccEEEeeecccCCcceeeecccccccc----ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-------h---
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLD----NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-------I---  306 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~----~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-------~---  306 (452)
                      ++++|+|++|+|||||+|.+++..+..    ...++.........+..   .+-...+.++|++|....       .   
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~---~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE---SNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC-----CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec---CccccccchhhhhhhhhccccchhhhHHH
Confidence            458999999999999999998754321    11122222221111111   222346788999874321       0   


Q ss_pred             ----hhhhhh-------------hcCC--C-EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        307 ----CMSRVY-------------YQNS--D-GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       307 ----~~~~~~-------------i~~a--d-~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                          ..+..+             +.++  | +++|+.|+..+.+..+++.    +...     ..++|+|+|.||+|...
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Diei----lk~L-----~~~~~vI~Vi~KtD~Lt  190 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVT----MKKL-----DSKVNIIPIIAKADAIS  190 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHH----HHHT-----CSCSEEEEEESCGGGSC
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHH----HHHH-----hhCCCEEEEEcchhccc
Confidence                011111             1122  3 4666778776665555322    2222     14589999999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.15  E-value=9.7e-07  Score=79.83  Aligned_cols=41  Identities=34%  Similarity=0.497  Sum_probs=27.8

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||++||++|||||||+++|++..|...+.+|++..+.
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   58 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS   58 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE
Confidence            44589999999999999999999999988888888876553

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.14  E-value=1.7e-06  Score=77.65  Aligned_cols=41  Identities=17%  Similarity=0.473  Sum_probs=35.9

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||++||++|||||||+++|+++.|...+.+|++.++.
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~   59 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS   59 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee
Confidence            34589999999999999999999999999889999876663

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.14  E-value=2.6e-06  Score=77.25  Aligned_cols=41  Identities=27%  Similarity=0.465  Sum_probs=37.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ..+||+++|++|||||||+++|++..|...+.+|++.++..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~   64 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA   64 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE
Confidence            35899999999999999999999999998899999888753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.14  E-value=6.7e-07  Score=79.64  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=33.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||+++|++|||||||+++|+++.| ..+.+|+|.....
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~   59 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE   59 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEE
Confidence            48999999999999999999999988 5777888766543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.13  E-value=2e-06  Score=77.71  Aligned_cols=44  Identities=25%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL  150 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~  150 (452)
                      ..+||+|||++|||||||+|||++..+. ....+++|.++..+.+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTL   49 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEE
Confidence            4589999999999999999999975443 2334567888765544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.12  E-value=2.9e-06  Score=75.94  Aligned_cols=45  Identities=42%  Similarity=0.732  Sum_probs=40.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ..+||+++|++|||||||+++|++..|...+.+++|.++....+.
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   63 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD   63 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEE
Confidence            458999999999999999999999999988899999888766554

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.12  E-value=2.5e-06  Score=78.68  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL  150 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~  150 (452)
                      ...+||+|||++|||||||+|||++..+. ....+++|.++..+.+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i   80 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTL   80 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEE
Confidence            44689999999999999999999975543 2344568888765544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.12  E-value=2.4e-06  Score=75.16  Aligned_cols=46  Identities=37%  Similarity=0.668  Sum_probs=36.7

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+++|++|||||||+++|++..|...+.+++|.++....+.
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~   50 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE   50 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEE
Confidence            4568999999999999999999999999988999999888665544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.12  E-value=2.4e-06  Score=74.39  Aligned_cols=45  Identities=42%  Similarity=0.791  Sum_probs=33.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ..+||+++|++|||||||+++|++..|...+.++++.++....+.
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~   46 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD   46 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence            358999999999999999999999999888999999888766554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.12  E-value=2.8e-06  Score=74.06  Aligned_cols=46  Identities=39%  Similarity=0.610  Sum_probs=40.2

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+.+||+++|++|||||||+++|+++.+...+.+|++.++....+.
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~   49 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN   49 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEE
Confidence            3568999999999999999999999999888999999888765544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.10  E-value=2.7e-07  Score=92.64  Aligned_cols=129  Identities=11%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             cccEEEeeecccCCcceeeeccccc-------cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhh----
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNK-------FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICM----  308 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~-------~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~----  308 (452)
                      ..+++++|.+|+|||||+|++++..       ......++++.+...  +.+   ...   +.++||||......+    
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~---~~~---~~liDtPG~~~~~~~~~~l  231 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL---DEE---SSLYDTPGIINHHQMAHYV  231 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES---SSS---CEEEECCCBCCTTSGGGGS
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe---cCC---eEEEeCCCcCcHHHHHHHh
Confidence            3689999999999999999999752       112334445444332  222   222   678899996432211    


Q ss_pred             h----hhh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC
Q psy14768        309 S----RVY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN  382 (452)
Q Consensus       309 ~----~~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~  382 (452)
                      .    ..+  .+..+.+++++|......+..+..    +...    ...+.|+++|+||.|...........+.+.+.++
T Consensus       232 ~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l----~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g  303 (368)
T 3h2y_A          232 GKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYV----SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG  303 (368)
T ss_dssp             CHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEE----ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred             hHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEe----cCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence            1    111  356788999998743321122111    1111    2345899999999999864444455556666666


Q ss_pred             CC
Q psy14768        383 FM  384 (452)
Q Consensus       383 ~~  384 (452)
                      ..
T Consensus       304 ~~  305 (368)
T 3h2y_A          304 DL  305 (368)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.09  E-value=3.3e-06  Score=75.51  Aligned_cols=47  Identities=45%  Similarity=0.678  Sum_probs=40.8

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ....+||+++|++|||||||+++|++..|...+.+++|.++....+.
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~   58 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS   58 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEE
Confidence            34568999999999999999999999999988999999888766544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.09  E-value=3.3e-06  Score=74.73  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeec
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~  152 (452)
                      +||+|||++|||||||+|+|++..+. ....++.++++....+..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~   49 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI   49 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE
Confidence            69999999999999999999998765 344556666665554443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.09  E-value=3.9e-06  Score=74.75  Aligned_cols=42  Identities=40%  Similarity=0.699  Sum_probs=38.1

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ....+||+|+|++|||||||+++|++..|...+.+|+|.++.
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   49 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR   49 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence            355689999999999999999999999998888999988876

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.08  E-value=2.6e-06  Score=76.32  Aligned_cols=42  Identities=21%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ...+||+|+|++|||||||+++|+++.|...+.+|+|.++..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~   61 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK   61 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE
Confidence            345899999999999999999999999988888999877653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.08  E-value=4.8e-06  Score=81.14  Aligned_cols=80  Identities=11%  Similarity=0.005  Sum_probs=49.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCCCC-----------------C
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ-----------------T  168 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~  168 (452)
                      +..+|+|||+||||||||+|+|++.+++ ....+..+++.....+.+........|+.+...                 .
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~   85 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   85 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence            3467999999999999999999999887 334443333332222222222223333333321                 2


Q ss_pred             CceeEEEEcCCCCCchhh
Q psy14768        169 PSYLILITGDSTVGKTSY  186 (452)
Q Consensus       169 ~~~~Il~vgD~~vGkTsl  186 (452)
                      ....++||.|...+.+..
T Consensus        86 ~ad~il~VvD~~~~~~~~  103 (301)
T 1wf3_A           86 DVNAVVWVVDLRHPPTPE  103 (301)
T ss_dssp             SCSEEEEEEETTSCCCHH
T ss_pred             cCCEEEEEEECCCCCChH
Confidence            344788899987776654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.08  E-value=3.8e-06  Score=75.96  Aligned_cols=47  Identities=38%  Similarity=0.721  Sum_probs=40.7

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+..+||+|+|++|||||||+++|++..|...+.+++|.++....+.
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   51 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY   51 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEE
Confidence            34579999999999999999999999999888899998888765543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.08  E-value=3.3e-06  Score=74.74  Aligned_cols=39  Identities=36%  Similarity=0.627  Sum_probs=35.4

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..+||+++|++|||||||+++|+++.|...+.+|++..+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   43 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF   43 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence            358999999999999999999999999888889988776

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.08  E-value=4.1e-06  Score=73.92  Aligned_cols=47  Identities=30%  Similarity=0.562  Sum_probs=40.4

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +...+||+++|++|||||||+++|++..+...+.+++|.++....+.
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~   55 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA   55 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEE
Confidence            34568999999999999999999999999988889999888766544

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.08  E-value=3.7e-06  Score=74.05  Aligned_cols=41  Identities=27%  Similarity=0.577  Sum_probs=36.5

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||+++|++|||||||+++|++..|...+.+|++.++.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   47 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT   47 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence            34589999999999999999999999998888899887765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.08  E-value=3.4e-06  Score=75.83  Aligned_cols=48  Identities=42%  Similarity=0.598  Sum_probs=40.3

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+...+||+|+|++|||||||+++|++..|...+.+++|.++....+.
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~   66 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP   66 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEE
Confidence            345569999999999999999999999999888899999888765543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.07  E-value=2.5e-06  Score=74.00  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      +||+++|++|||||||+++|+++.|. .+.+|+|..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~   35 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN   35 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCcee
Confidence            48999999999999999999998887 467888744

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.07  E-value=4.3e-06  Score=76.25  Aligned_cols=40  Identities=38%  Similarity=0.576  Sum_probs=36.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ..+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~   47 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS   47 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE
Confidence            4589999999999999999999999998888999987664

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.07  E-value=2.1e-06  Score=78.61  Aligned_cols=47  Identities=38%  Similarity=0.704  Sum_probs=40.9

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+..+||+|+|++|||||||+++|++..|...+.+|++.++..+.+.
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~   68 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVV   68 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEE
Confidence            35679999999999999999999999999888889998888765544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.06  E-value=3.3e-06  Score=81.08  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      .+||++||+||||||||||+|++..+.....++++++.....+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~   45 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV   45 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE
Confidence            4799999999999999999999987654445666665544333

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.06  E-value=2e-06  Score=81.92  Aligned_cols=46  Identities=22%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ..+||+++|++|||||||||+|++..+.....++++++.....+..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~   49 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY   49 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE
Confidence            4589999999999999999999998877555566666655544443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.06  E-value=3.8e-06  Score=76.00  Aligned_cols=46  Identities=37%  Similarity=0.700  Sum_probs=37.4

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++.+||+|||++|||||||+++|++..|...+.+|+|.++....+.
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~   48 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ   48 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence            3468999999999999999999999999988899998888765544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.05  E-value=2.8e-06  Score=75.72  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .+||++||++|||||||+++|++..+...+.+++++++....+..
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~   51 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY   51 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe
Confidence            489999999999999999999998776666677777766555543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.05  E-value=1.8e-06  Score=77.21  Aligned_cols=41  Identities=27%  Similarity=0.482  Sum_probs=28.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc--cCCCCCcCccccCceeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~--~~~~~~~~~~~~~~~~~~  149 (452)
                      +||+|||++|||||||+++|++.  .|...+.+|+|.++....
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~   45 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP   45 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEee
Confidence            69999999999999999999984  566778899998886544

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.05  E-value=4.6e-06  Score=72.58  Aligned_cols=46  Identities=37%  Similarity=0.572  Sum_probs=39.9

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+.+||+++|++|||||||+++|+++.|...+.+++|.++....+.
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~   49 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ   49 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Confidence            3458999999999999999999999999888899998887765544

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.05  E-value=5.1e-06  Score=74.54  Aligned_cols=41  Identities=32%  Similarity=0.566  Sum_probs=36.5

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   56 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA   56 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence            35689999999999999999999999998888999877763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.04  E-value=5.5e-06  Score=73.00  Aligned_cols=47  Identities=38%  Similarity=0.694  Sum_probs=39.5

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLL  150 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~  150 (452)
                      .....+||+++|++|||||||+++|++..|. ..+.+|++.++....+
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~   53 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVL   53 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEE
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEE
Confidence            3455689999999999999999999999986 5788999888765543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.04  E-value=3.3e-06  Score=77.19  Aligned_cols=41  Identities=37%  Similarity=0.584  Sum_probs=36.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||++||++|||||||+++|++..|...+.+|++.++.
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~   66 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT   66 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence            45689999999999999999999999999888999877663

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.04  E-value=2e-06  Score=82.64  Aligned_cols=47  Identities=21%  Similarity=0.201  Sum_probs=38.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK  154 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (452)
                      .++|+++|.+|||||||||+|++..+...+.++++++.....+....
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~   49 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD   49 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC
Confidence            37999999999999999999999887766777777777666655433

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.04  E-value=4.7e-06  Score=72.47  Aligned_cols=46  Identities=33%  Similarity=0.580  Sum_probs=39.4

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+++|++|||||||+++|+++.+...+.+++|.++....+.
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~   49 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC   49 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEE
Confidence            3458999999999999999999999999888889998887665543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.04  E-value=2.9e-06  Score=76.78  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ...+||+|||++|||||||++||++..+...+.++.+.++..+.+
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~   65 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI   65 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEE
Confidence            456899999999999999999998776665566777777665543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.03  E-value=2.6e-06  Score=76.15  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=33.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|+++.|. .+.+|+|....
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~   53 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE   53 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE
Confidence            489999999999999999999998887 77888875544

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.03  E-value=4.8e-06  Score=72.36  Aligned_cols=44  Identities=36%  Similarity=0.679  Sum_probs=38.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+||+++|++|||||||+++|+++.+...+.+++|.++....+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~   46 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT   46 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence            48999999999999999999999999988899998888665544

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.03  E-value=2.1e-06  Score=77.56  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      .+.+||++||++|||||||++++.++ |...  ++++.++....
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~   58 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKI   58 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccce
Confidence            34589999999999999999987764 4322  56666655444

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.03  E-value=5e-06  Score=73.02  Aligned_cols=45  Identities=33%  Similarity=0.703  Sum_probs=39.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ..+||+++|++|||||||+++|++..|...+.++++.++....+.
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~   57 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY   57 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEE
Confidence            458999999999999999999999999988899998888765543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.02  E-value=5e-06  Score=75.26  Aligned_cols=46  Identities=46%  Similarity=0.801  Sum_probs=39.9

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+|+|++|||||||+++|++..|...+.+|+|.++....+.
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~   51 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM   51 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEE
Confidence            4568999999999999999999999999988999998888765543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.02  E-value=3.6e-06  Score=72.69  Aligned_cols=43  Identities=19%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~  151 (452)
                      .||+++|++|||||||+++|++..+. ....++.+.++....+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   45 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVE   45 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEE
Confidence            68999999999999999999998865 34445555555544433

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.01  E-value=3.7e-06  Score=76.12  Aligned_cols=39  Identities=33%  Similarity=0.589  Sum_probs=35.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..+||+|||++|||||||+++|++..|...+.+|++..+
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   61 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY   61 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            458999999999999999999999999988888887666

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.01  E-value=3e-06  Score=76.34  Aligned_cols=39  Identities=26%  Similarity=0.551  Sum_probs=35.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|+++.|...+.+|++.++.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~   66 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR   66 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE
Confidence            489999999999999999999999999888899886664

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.01  E-value=4.4e-06  Score=73.95  Aligned_cols=40  Identities=35%  Similarity=0.567  Sum_probs=35.2

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ..+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   43 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS   43 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE
Confidence            3589999999999999999999999998888888876553

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.00  E-value=1.4e-06  Score=79.82  Aligned_cols=45  Identities=38%  Similarity=0.596  Sum_probs=37.7

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ...+||+|||++|||||||+|+|++..|...+.+|++.++.....
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~   53 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF   53 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE
Confidence            456899999999999999999999999988888888776655443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.99  E-value=2.3e-06  Score=81.41  Aligned_cols=46  Identities=20%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK  154 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (452)
                      .+|+++|.+|||||||||+|++..+.....++++++.....+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~   47 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE   47 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC
Confidence            4899999999999999999999887766667887777666655443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.98  E-value=7.1e-06  Score=72.67  Aligned_cols=40  Identities=33%  Similarity=0.619  Sum_probs=36.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ...+||+++|++|||||||+++|+++.|...+.++++..+
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~   55 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY   55 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee
Confidence            4568999999999999999999999999988889887666

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.97  E-value=4.5e-06  Score=73.74  Aligned_cols=39  Identities=36%  Similarity=0.589  Sum_probs=26.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~   46 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS   46 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCCC----------CB
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE
Confidence            479999999999999999999999998888888876554

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.97  E-value=5.5e-06  Score=73.84  Aligned_cols=41  Identities=37%  Similarity=0.584  Sum_probs=35.9

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||+++|++|||||||+++|+++.|...+.+|++.++.
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~   45 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT   45 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence            45689999999999999999999999998888899876663

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.96  E-value=3.1e-06  Score=76.26  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      .+||+++|++|||||||+++|+++.|. .+.+|+|..
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~   64 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN   64 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee
Confidence            489999999999999999999998887 567787733

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.96  E-value=3.2e-06  Score=80.90  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=39.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYG  156 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (452)
                      .++|+++|.+|||||||+|+|++..+.....+++++++....+.+....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~   51 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE   51 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce
Confidence            4799999999999999999999998876677888887776666554433

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.95  E-value=3.6e-06  Score=75.04  Aligned_cols=37  Identities=22%  Similarity=0.426  Sum_probs=31.1

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      ..+||++||++|||||||+++|++..+. .+.+|+|..
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~   51 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN   51 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE
Confidence            3489999999999999999999988664 567888744

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.94  E-value=7.5e-06  Score=73.52  Aligned_cols=42  Identities=38%  Similarity=0.574  Sum_probs=37.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ...+||++||++|||||||+++|++..|...+.+|++.++..
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~   62 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH   62 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE
Confidence            456899999999999999999999999988889998777653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.93  E-value=2.2e-06  Score=77.56  Aligned_cols=47  Identities=32%  Similarity=0.543  Sum_probs=10.6

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc--cCCCCCcCccccCceeeeeecc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN--KFLDNYKNTVGVDFSTKLLSHK  153 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~  153 (452)
                      ..+||+++|++|||||||+++|++.  .|...+.+|+|.++....+...
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~   67 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP   67 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC
Confidence            4589999999999999999999999  8888889999888776665543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.93  E-value=6.8e-06  Score=74.81  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||+++|++|||||||+++|+++.|...+.+|++.++..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~   64 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA   64 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE
Confidence            4799999999999999999999999998888888877643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.93  E-value=6.8e-06  Score=72.45  Aligned_cols=37  Identities=24%  Similarity=0.491  Sum_probs=32.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||++||++|||||||++||+++.|.. +.+|++..+
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~   43 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY   43 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence            4899999999999999999999999985 788887544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.92  E-value=2.3e-05  Score=79.49  Aligned_cols=162  Identities=16%  Similarity=0.158  Sum_probs=86.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccc-cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh----hh-hhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY----IC-MSRVYY  313 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~-~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~----~~-~~~~~i  313 (452)
                      ...++++|++|+|||||+|.+++-..... ....-+.+.....+.+ . ......+.+||++|....    .. +....+
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~-q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-K-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-E-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec-c-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            34789999999999999999987221110 0000000000000111 0 111124678999985321    11 111224


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC-------C-CcccHH----HHHHHH---
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP-------D-RQVEIN----EIEAVC---  378 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~-------~-~~~~~e----~~~~~~---  378 (452)
                      ...+.+++ ++... ..-+++.........        ++|+++|.||.|+.       . .....+    .+.++.   
T Consensus       147 ~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~  216 (413)
T 1tq4_A          147 YEYDFFII-ISATR-FKKNDIDIAKAISMM--------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT  216 (413)
T ss_dssp             GGCSEEEE-EESSC-CCHHHHHHHHHHHHT--------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCC-ccHHHHHHHHHHHhc--------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            45566665 77653 123443332222222        38999999999874       1 122222    333343   


Q ss_pred             -HHcC--CCEEEEecC--CCCccHHHHHHHHHHHHHHhhh
Q psy14768        379 -HQYN--FMSWIEVSS--KEHLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       379 -~~~~--~~~~~evSA--ktg~nv~~lf~~i~~~i~~~~~  413 (452)
                       .+.+  ....+.+|+  .++.+++++.+.+...+-+...
T Consensus       217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~  256 (413)
T 1tq4_A          217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  256 (413)
T ss_dssp             HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence             1222  334688999  6677899999999877755543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.91  E-value=7.9e-06  Score=71.26  Aligned_cols=37  Identities=22%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+++|+++.|. .+.+|+|...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~   43 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV   43 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce
Confidence            489999999999999999999998886 5677876544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.91  E-value=8.7e-06  Score=72.37  Aligned_cols=37  Identities=27%  Similarity=0.540  Sum_probs=32.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+++|+++. ...+.+|+|...
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~   54 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI   54 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce
Confidence            4899999999999999999999888 667888887443

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.91  E-value=3.5e-06  Score=75.34  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCC-----------CcCccccCceee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDN-----------YKNTVGVDFSTK  148 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~-----------~~~~~~~~~~~~  148 (452)
                      ...+||++||++|||||||+ +++.+.|...           +.+|+|.++...
T Consensus        12 ~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~   64 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL   64 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCS
T ss_pred             ccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeeccc
Confidence            45699999999999999999 5666666644           345777666543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.88  E-value=1.2e-05  Score=70.27  Aligned_cols=43  Identities=28%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +.+||+++|++|||||||+++|++..+... .++.|.++....+
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~   45 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTL   45 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEE
Confidence            358999999999999999999999888743 3456766654443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.88  E-value=9.2e-06  Score=73.03  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||++||++|||||||+++|+++.|. .+.+|++....
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~   60 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE   60 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeE
Confidence            369999999999999999999999886 57788876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.88  E-value=8.6e-06  Score=75.44  Aligned_cols=38  Identities=16%  Similarity=0.188  Sum_probs=27.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+|||++|||||||+|+|+++.|.....+..+.++
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~   66 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL   66 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee
Confidence            48999999999999999999999888633333333333

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.87  E-value=1.1e-05  Score=69.87  Aligned_cols=39  Identities=31%  Similarity=0.600  Sum_probs=34.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|+++.+...+.+|++..+.
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   41 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR   41 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE
Confidence            479999999999999999999999998888888876553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.87  E-value=8.6e-06  Score=77.10  Aligned_cols=46  Identities=17%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhcc-CCCCCcCc-cccCceeeeeecc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNK-FLDNYKNT-VGVDFSTKLLSHK  153 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~-~~~~~~~~-~~~~~~~~~~~~~  153 (452)
                      .++|+|||.+|||||||+|+|++.. |...+.++ ++++.....+.+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~   69 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG   69 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC
Confidence            4799999999999999999999887 55555555 5666554444443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.87  E-value=1.2e-05  Score=71.17  Aligned_cols=41  Identities=22%  Similarity=0.545  Sum_probs=35.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ...+||+++|++|||||||+++|++..|...+.+|.+..+.
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   56 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR   56 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE
Confidence            34589999999999999999999999998888888766553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.87  E-value=8.8e-06  Score=78.02  Aligned_cols=133  Identities=15%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccc--------cC-CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-----
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDN--------YK-NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-----  305 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~--------~~-~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-----  305 (452)
                      .++++++|++|+|||||+|.+++......        .. .+.....  ..+.. .-.+-...+.++|+.|.-..     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~--i~~v~-q~~~~~~~ltv~d~~~~g~~~~~~~   78 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKA--IGHVI-EEGGVKMKLTVIDTPGFGDQINNEN   78 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCE--EEESC-C----CCEEEEECCCC--CCSBCTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeee--eEEEe-ecCCCcCCceEEechhhhhhcccHH
Confidence            36899999999999999999986322110        00 1111111  11111 00112236788999873110     


Q ss_pred             --hhhh---------------------hhhhcCCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        306 --ICMS---------------------RVYYQNSDGCIIMFDLT-NRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       306 --~~~~---------------------~~~i~~ad~vIlV~D~t-~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                        ..+.                     ...+..++++++++|.. .+..-.++ ..+..+...        +++|+|.+|
T Consensus        79 ~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~~l~~L~~~--------~~vI~Vi~K  149 (270)
T 3sop_A           79 CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-EFMKHLSKV--------VNIIPVIAK  149 (270)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-HHHHHHHTT--------SEEEEEETT
T ss_pred             HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-HHHHHHHhc--------CcEEEEEec
Confidence              0000                     01244579999999965 44444443 223333322        899999999


Q ss_pred             CCCCCC---cccHHHHHHHHHHcCCC
Q psy14768        362 CDLPDR---QVEINEIEAVCHQYNFM  384 (452)
Q Consensus       362 ~Dl~~~---~~~~e~~~~~~~~~~~~  384 (452)
                      +|....   ....+.+.+.....++.
T Consensus       150 ~D~lt~~e~~~~k~~i~~~l~~~~i~  175 (270)
T 3sop_A          150 ADTMTLEEKSEFKQRVRKELEVNGIE  175 (270)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCcc
Confidence            998751   11222334444455554

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.87  E-value=1e-05  Score=71.49  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|+++.+ ..+.+|+|....
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~   55 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVE   55 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceE
Confidence            48999999999999999999998888 577788875543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.86  E-value=1.2e-05  Score=71.52  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ++||+++|++|||||||+++|++..|...+.++++.+..
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~   39 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII   39 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE
Confidence            368999999999999999999999988777777655543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.86  E-value=1.2e-05  Score=77.09  Aligned_cols=47  Identities=26%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhc-cCCCCC-------cCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQN-KFLDNY-------KNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~-~~~~~~-------~~~~~~~~~~~~~~~  152 (452)
                      ...++|+|||.+|||||||+|++++. .+...+       .+|+++++....+.+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   60 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE   60 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec
Confidence            34589999999999999999997654 444555       778887776666544

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.85  E-value=7.2e-06  Score=75.41  Aligned_cols=46  Identities=26%  Similarity=0.590  Sum_probs=39.7

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||+++|++|||||||+++|+.+.|...+.+++|.++....+.
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~   58 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH   58 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE
Confidence            4568999999999999999999999998888889998887766543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.85  E-value=1.2e-05  Score=69.97  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+||+++|++|||||||+++|++..+...+.++.+.++....+.
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~   45 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM   45 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEE
Confidence            58999999999999999999998888766666666666555443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.84  E-value=7.4e-06  Score=74.20  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=28.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||++||++|||||||+++|+++.|. .+.+|++.....
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~   63 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE   63 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEE
Confidence            379999999999999999999998886 577888776543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.84  E-value=7.1e-06  Score=84.64  Aligned_cols=78  Identities=22%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCC-----------------CCCCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP-----------------IQTPS  170 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  170 (452)
                      ++|+|||.+|||||||+|+|++..+. ....++.++++....+........+.++.+.                 .....
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a  304 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA  304 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence            78999999999999999999998766 5566777776654444433333333333332                 12334


Q ss_pred             eeEEEEcCCCCCchhh
Q psy14768        171 YLILITGDSTVGKTSY  186 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl  186 (452)
                      ..+++|.|...+.+..
T Consensus       305 D~vl~VvD~s~~~~~~  320 (462)
T 3geh_A          305 DLVLLTIDAATGWTTG  320 (462)
T ss_dssp             SEEEEEEETTTCSCHH
T ss_pred             CEEEEEeccCCCCCHH
Confidence            5688888877665544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.84  E-value=7.6e-06  Score=84.74  Aligned_cols=76  Identities=16%  Similarity=0.117  Sum_probs=37.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCCC-----------------CCCCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP-----------------IQTPS  170 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~  170 (452)
                      +||+|||.+|||||||+|+|++..+. ....++.++++....+....+...+.++.+.                 .....
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a  313 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA  313 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence            78999999999999999999998654 5666777777765555444433333333332                 12334


Q ss_pred             eeEEEEcCCCCCch
Q psy14768        171 YLILITGDSTVGKT  184 (452)
Q Consensus       171 ~~Il~vgD~~vGkT  184 (452)
                      ..+++|.|...+.+
T Consensus       314 D~vl~VvD~s~~~s  327 (476)
T 3gee_A          314 DLILYLLDLGTERL  327 (476)
T ss_dssp             SEEEEEEETTTCSS
T ss_pred             CEEEEEEECCCCcc
Confidence            46777777766554

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.83  E-value=7.8e-06  Score=72.97  Aligned_cols=37  Identities=27%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||++||++|||||||+++|+++.+. .+.+|+|...
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~   58 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL   58 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE
Confidence            489999999999999999999988876 4677877544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.82  E-value=1.1e-05  Score=75.42  Aligned_cols=47  Identities=15%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcC--ccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKN--TVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~--~~~~~~~~~~~~~  152 (452)
                      ...++|+|||++|||||||+|++++..+.....+  +++.+.....+.+
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~   75 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW   75 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe
Confidence            3458999999999999999999999888755444  4555555444443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.82  E-value=9.6e-06  Score=72.59  Aligned_cols=40  Identities=25%  Similarity=0.416  Sum_probs=24.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .++|+++|++|||||||+|+|+++.|...+.++.|..+..
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~   62 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL   62 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE
Confidence            4799999999999999999999998776666666554443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.81  E-value=1.5e-05  Score=71.55  Aligned_cols=38  Identities=34%  Similarity=0.585  Sum_probs=33.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||++||++|||||||+++|++..|...+.+|++..+
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   45 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY   45 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce
Confidence            48999999999999999999999999888888876544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.81  E-value=1.7e-05  Score=68.93  Aligned_cols=39  Identities=33%  Similarity=0.531  Sum_probs=34.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+|+|+++.|...+.++++..+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   41 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR   41 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE
Confidence            479999999999999999999999998788888875553

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.79  E-value=1.9e-05  Score=71.19  Aligned_cols=40  Identities=23%  Similarity=0.561  Sum_probs=34.8

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ...+||+|+|++|||||||+++|+++.|...+.+|.+..+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   51 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY   51 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            3458999999999999999999999999888888876554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.79  E-value=1.9e-05  Score=68.15  Aligned_cols=38  Identities=29%  Similarity=0.581  Sum_probs=33.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+++|+++.|...+.++++..+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   40 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY   40 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence            47999999999999999999999999877888876443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.78  E-value=1.6e-05  Score=72.88  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .++|+|+|.+|||||||+|+|+++.+
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~   54 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKR   54 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence            37999999999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.78  E-value=1.8e-05  Score=70.61  Aligned_cols=39  Identities=33%  Similarity=0.641  Sum_probs=33.1

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+..+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   58 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY   58 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE
Confidence            348999999999999999999999988877777775444

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.77  E-value=2.3e-05  Score=67.75  Aligned_cols=39  Identities=23%  Similarity=0.592  Sum_probs=34.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||+++|++|||||||+++|+++.|...+.+|.+..+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   42 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR   42 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE
Confidence            489999999999999999999999988788888766553

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.77  E-value=3.3e-05  Score=75.39  Aligned_cols=77  Identities=16%  Similarity=0.056  Sum_probs=48.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeecc-ccCCCCCCCCCCCCC------------------
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHK-KYGGRPYGTFSPIQT------------------  168 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------  168 (452)
                      -.|+|+|++|||||||+|+|++.++. ....+..+++......... .+.....++.+....                  
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l   90 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL   90 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence            47999999999999999999999987 3334444444333333333 333333444443221                  


Q ss_pred             -CceeEEEEcCCCCCchh
Q psy14768        169 -PSYLILITGDSTVGKTS  185 (452)
Q Consensus       169 -~~~~Il~vgD~~vGkTs  185 (452)
                       ....++||.|...+.+.
T Consensus        91 ~~aD~il~VvD~~~~~~~  108 (308)
T 3iev_A           91 EEADVILFMIDATEGWRP  108 (308)
T ss_dssp             HHCSEEEEEEETTTBSCH
T ss_pred             hcCCEEEEEEeCCCCCCc
Confidence             22368888888877654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.73  E-value=1.9e-05  Score=83.02  Aligned_cols=43  Identities=30%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK  148 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~  148 (452)
                      ...+||++||++|||||||+++|++..|...+.+|+|.++..+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~   81 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK   81 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEe
Confidence            3458999999999999999999999999988999999988755

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.72  E-value=1.6e-05  Score=75.33  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=34.7

Q ss_pred             ccEEEEEEEcCC---------CCchHHHHHHHhh---ccCCCCCcCcc-ccCcee
Q psy14768        106 ETVLKILVIGDS---------TVGKTSYVQGFVQ---NKFLDNYKNTV-GVDFST  147 (452)
Q Consensus       106 ~~~~kv~ivG~~---------~vGKs~l~~r~~~---~~~~~~~~~~~-~~~~~~  147 (452)
                      ...+||+|||++         |||||||++||++   ..|...+.+|+ |.+|..
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~   71 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGG   71 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTS
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccce
Confidence            345899999999         9999999999999   56666777775 777754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.70  E-value=1.3e-05  Score=78.19  Aligned_cols=42  Identities=26%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC---CCCcCccccCceeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFSTKL  149 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~---~~~~~~~~~~~~~~~  149 (452)
                      .+||+++|++|||||||+++|+++...   ..+.+|++.++....
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~   47 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR   47 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE
Confidence            379999999999999999999987433   357788887776544

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.67  E-value=2.9e-05  Score=70.49  Aligned_cols=37  Identities=35%  Similarity=0.547  Sum_probs=32.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      .+||+++|++|||||||++||+++.|...+.+|++..
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~   66 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN   66 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence            4899999999999999999999999988888887543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=97.67  E-value=8.1e-06  Score=84.64  Aligned_cols=56  Identities=14%  Similarity=0.166  Sum_probs=40.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS  164 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (452)
                      ++|+|||+||||||||+|+|++..++ ....++.++|+....+........+.|+.+
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG  300 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG  300 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSC
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCC
Confidence            79999999999999999999998765 566677777776666555444333334333

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.65  E-value=2.1e-05  Score=71.64  Aligned_cols=40  Identities=15%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ..+||++||++|||||||+++|++..|...+. +++.++..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~   45 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI   45 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE
Confidence            34799999999999999999999999886665 44444443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.65  E-value=4.4e-05  Score=67.56  Aligned_cols=35  Identities=34%  Similarity=0.665  Sum_probs=31.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      .+||+++|++|||||||+|+|+++.+...+.+|.+
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~   38 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE   38 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch
Confidence            48999999999999999999999998877777764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.82  E-value=6.8e-06  Score=74.50  Aligned_cols=40  Identities=35%  Similarity=0.567  Sum_probs=34.4

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ..+||+++|++|||||||+++|+++.|...+.+|++..+.
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   68 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS   68 (204)
Confidence            3489999999999999999999999998888888765553

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.64  E-value=3.3e-05  Score=73.60  Aligned_cols=85  Identities=11%  Similarity=-0.005  Sum_probs=60.3

Q ss_pred             hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEE
Q psy14768        308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWI  387 (452)
Q Consensus       308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~  387 (452)
                      .....++++|++|+|+|+.++.+..+...     . .    .  ++|.++|+||+|+.+.. ..+...++.+..++. + 
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l-----~-l----l--~k~~iivlNK~DL~~~~-~~~~~~~~~~~~g~~-v-   78 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYGV-----D-F----S--RKETIILLNKVDIADEK-TTKKWVEFFKKQGKR-V-   78 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTTS-----C-C----T--TSEEEEEEECGGGSCHH-HHHHHHHHHHHTTCC-E-
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChHH-----H-h----c--CCCcEEEEECccCCCHH-HHHHHHHHHHHcCCe-E-
Confidence            34567899999999999999876643210     1 1    0  48999999999997521 122233444555666 6 


Q ss_pred             EecCCCCccHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~  407 (452)
                      ++||+++.|++++++.+...
T Consensus        79 ~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           79 ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             EECCTTSCHHHHHHHHCCCT
T ss_pred             EEECCCCcCHHHHHHHHHHh
Confidence            99999999999998877543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.64  E-value=4e-05  Score=65.90  Aligned_cols=38  Identities=29%  Similarity=0.563  Sum_probs=32.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+++|.++.+...+.++++..+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~   40 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY   40 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE
Confidence            37999999999999999999999998877777775443

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.63  E-value=3.1e-05  Score=70.89  Aligned_cols=39  Identities=31%  Similarity=0.540  Sum_probs=27.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ..+||++||++|||||||+++|+++.|...+.+|++..+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~   71 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY   71 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence            358999999999999999999999998877888875544

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.62  E-value=3.9e-05  Score=68.51  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCC---CCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~---~~~~~~~~~~  145 (452)
                      .++|+++|.+|||||||+++|++..+..   .+.++++.++
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~   88 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY   88 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee
Confidence            4799999999999999999999988763   4556665554

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.61  E-value=2.7e-05  Score=76.76  Aligned_cols=40  Identities=23%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ..+||+|||++|||||||+++|++..|.. ..+|++.++..
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~~pT~~~~~~~  203 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET  203 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEE-EEEETTEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCC-cccccceEEEE
Confidence            34799999999999999999999988863 34677766544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.53  E-value=3.9e-05  Score=66.48  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+++|.+..+. ...++.|..+
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~   38 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY   38 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce
Confidence            479999999999999999999977665 3344554444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.52  E-value=7.7e-05  Score=76.21  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=47.2

Q ss_pred             eeEEEEEEecCCcchhh-----hhh-hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCC-c-EEEEEEC
Q psy14768        290 RPVKLQIWDIAGQDRYI-----CMS-RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAML-P-CLLLASK  361 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~~~-----~~~-~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~-p-iilV~NK  361 (452)
                      ..+.+.|+||+|.....     .+. ...+..+|.+++|+|++.+.   +.......+..        .. | ..+|+||
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~~i~gvVlnK  247 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFKE--------AVGEIGSIIVTK  247 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHHT--------TSCSCEEEEEEC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHhh--------cccCCeEEEEeC
Confidence            34678899999965321     111 11233689999999998654   22222222322        25 5 7899999


Q ss_pred             CCCCCCcccHHHHHHHHHHcCCC
Q psy14768        362 CDLPDRQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       362 ~Dl~~~~~~~e~~~~~~~~~~~~  384 (452)
                      +|...+   ...+..+....+.+
T Consensus       248 ~D~~~~---~g~~l~~~~~~~~p  267 (432)
T 2v3c_C          248 LDGSAK---GGGALSAVAETKAP  267 (432)
T ss_dssp             SSSCST---THHHHHHHHHSSCC
T ss_pred             CCCccc---hHHHHHHHHHHCCC
Confidence            997531   12234456666554

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.52  E-value=5.5e-05  Score=69.09  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCC---CCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~---~~~~~~~~~~  145 (452)
                      ..++|+++|++|||||||+++|++..|..   .+.++++.++
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~   52 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY   52 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence            34799999999999999999999988764   4667766555

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.51  E-value=9.9e-05  Score=71.70  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=24.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ..+|+|||++|||||||+|++++.+++
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~   34 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKIS   34 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence            357999999999999999999998875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.46  E-value=5.3e-05  Score=73.82  Aligned_cols=89  Identities=15%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcc---cHHHHHHHHHHcC
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKS-FESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQV---EINEIEAVCHQYN  382 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S-~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~e~~~~~~~~~~  382 (452)
                      .+....+.++|.+++|+|+.++.. ...+..++...+.       .++|.+||+||+||.+...   ..+...++.+..+
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~-------~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g  150 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA-------NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG  150 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT-------TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence            334457899999999999997654 4444555544443       3589999999999986321   1233444445567


Q ss_pred             CCEEEEecCCCCccHHHHHHH
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNF  403 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~  403 (452)
                      +. .+++||+++.++++++..
T Consensus       151 ~~-v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          151 YD-VYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             CC-EEECCHHHHTTCTTTGGG
T ss_pred             Ce-EEEEecCCCCCHHHHHhh
Confidence            75 899999998887766543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.41  E-value=5e-05  Score=80.36  Aligned_cols=96  Identities=14%  Similarity=0.032  Sum_probs=53.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEE--EEEEeeecCCeeEEEEEEecCCcchhhh------hh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST--KLLSHKKYGGRPVKLQIWDIAGQDRYIC------MS  309 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~--~~i~~~~~~~~~~~l~l~DtaG~e~~~~------~~  309 (452)
                      .....|+|+|.||+|||||+|++++.........++ .+...  ..+..+........+.|+||+|......      ..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt-~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~  114 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV-QSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW  114 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS-SCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCC-CCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence            345789999999999999999999865322222222 11111  1111100012345678999999653221      11


Q ss_pred             hhhhc--CCCEEEEEEeCCChhhHHHHHH
Q psy14768        310 RVYYQ--NSDGCIIMFDLTNRKSFESVVQ  336 (452)
Q Consensus       310 ~~~i~--~ad~vIlV~D~t~~~S~~~~~~  336 (452)
                      ...+.  -++  ++|||++...+.+++..
T Consensus       115 ~fala~llss--~lv~n~~~~i~~~dl~~  141 (592)
T 1f5n_A          115 IFALAVLLSS--TFVYNSIGTINQQAMDQ  141 (592)
T ss_dssp             HHHHHHHHCS--EEEEEEESCSSHHHHHT
T ss_pred             HHHHHHHhcC--eEEEECCCCccHHHHHH
Confidence            00011  133  67788887777777654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.40  E-value=2.2e-05  Score=75.66  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      ..++++++|.||||||||+|++.+.. ......++++.+...  +..   +.   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~---~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV---GK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE---TT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe---CC---CEEEEECcCcC
Confidence            45789999999999999999999855 445555555544432  111   22   47799999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.39  E-value=9.1e-05  Score=75.59  Aligned_cols=90  Identities=13%  Similarity=0.012  Sum_probs=54.2

Q ss_pred             EEEEEEecCCcchhh-----hhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        292 VKLQIWDIAGQDRYI-----CMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~-----~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      +.+.|+||+|.....     .+.. .....+|.++||+|++.+...   ......+...       -.+..||+||+|..
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~-------~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA-------TPIGSIIVTKLDGS  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS-------CTTEEEEEECCSSC
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh-------CCCeEEEEECCCCc
Confidence            678899999953211     1111 123468999999999875432   2222344433       14567899999976


Q ss_pred             CCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        366 DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       366 ~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      .   ....+..+....+.+ +.+++.  |+++
T Consensus       253 ~---~gG~~ls~~~~~g~P-I~fig~--Ge~v  278 (443)
T 3dm5_A          253 A---KGGGALSAVAATGAP-IKFIGT--GEKI  278 (443)
T ss_dssp             S---SHHHHHHHHHTTCCC-EEEEEC--SSST
T ss_pred             c---cccHHHHHHHHHCCC-EEEEEc--CCCh
Confidence            4   233345556666766 777775  5544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.39  E-value=5.8e-05  Score=69.38  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=31.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .++|+|+|++|||||||+++|+...|...+.++++.++
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~   75 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV   75 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence            37999999999999999999999887766667776554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.38  E-value=0.00012  Score=69.49  Aligned_cols=57  Identities=18%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS  164 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (452)
                      .++|++||.+|||||||+|+|+++.+. ....++.+.+.....+.+......+.|+.+
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG   93 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPG   93 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCC
Confidence            489999999999999999999998864 233333344444444444433333444444

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.36  E-value=5.6e-05  Score=78.42  Aligned_cols=76  Identities=13%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccC-------------------------------CCCCcCccccCceeeeeecccc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKKY  155 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~  155 (452)
                      ..+||++||.+|||||||++||++...                               ..+...+++++.....+....+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            458999999999999999999986521                               1222334555555555555555


Q ss_pred             CCCCCCCCCCCC---------CCceeEEEEcCCCCC
Q psy14768        156 GGRPYGTFSPIQ---------TPSYLILITGDSTVG  182 (452)
Q Consensus       156 ~~~~~~~~~~~~---------~~~~~Il~vgD~~vG  182 (452)
                      ...+.|+.+...         .....+++|.|...|
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g  147 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  147 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence            555555555421         233478999999887

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.35  E-value=0.00016  Score=74.10  Aligned_cols=78  Identities=10%  Similarity=0.078  Sum_probs=51.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhcc-------------------------------CCCCCcCccccCceeeeeecccc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNK-------------------------------FLDNYKNTVGVDFSTKLLSHKKY  155 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (452)
                      ..++|+++|.+|+|||||++||++..                               +..+...+++++.....+....+
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~   95 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK   95 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence            45899999999999999999996532                               11223355666666666655555


Q ss_pred             CCCCCCCCCCC---------CCCceeEEEEcCCCCCch
Q psy14768        156 GGRPYGTFSPI---------QTPSYLILITGDSTVGKT  184 (452)
Q Consensus       156 ~~~~~~~~~~~---------~~~~~~Il~vgD~~vGkT  184 (452)
                      ...+.|+.+..         ......+++|+|+..|..
T Consensus        96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~  133 (439)
T 3j2k_7           96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF  133 (439)
T ss_pred             EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc
Confidence            55555555432         123457899999988853

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.34  E-value=0.00023  Score=63.21  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=28.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+|+|++..+. .+.++.|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~   59 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTR   59 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCcc
Confidence            479999999999999999999998854 3444544433

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.25  E-value=0.00014  Score=72.44  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=22.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ++|+|||.||||||||||++++..+.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~   28 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIE   28 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc
Confidence            68999999999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.21  E-value=0.00024  Score=67.67  Aligned_cols=27  Identities=37%  Similarity=0.636  Sum_probs=24.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .++|++||.+|||||||+|+|++..+.
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~   65 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVV   65 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            489999999999999999999998874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.21  E-value=0.0003  Score=68.18  Aligned_cols=93  Identities=10%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             eeEEEEEEecCCcch--hh-hhhh-----hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEE
Q psy14768        290 RPVKLQIWDIAGQDR--YI-CMSR-----VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLAS  360 (452)
Q Consensus       290 ~~~~l~l~DtaG~e~--~~-~~~~-----~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~N  360 (452)
                      ..+.+.|+||||...  .. .+..     .....+|.+++|+|++...   +.......+...        .+ ..+|.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~~--------~~i~gvVln  247 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQA--------SKIGTIIIT  247 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHT--------CTTEEEEEE
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHhh--------CCCCEEEEe
Confidence            346789999999765  21 1221     1345799999999987542   222222223222        55 678999


Q ss_pred             CCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       361 K~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      |+|...   ....+..+....+.+ +.+++  +|+++++
T Consensus       248 k~D~~~---~~g~~~~~~~~~~~p-i~~i~--~Ge~v~d  280 (297)
T 1j8m_F          248 KMDGTA---KGGGALSAVAATGAT-IKFIG--TGEKIDE  280 (297)
T ss_dssp             CGGGCT---THHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             CCCCCc---chHHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence            999753   233455677777766 77776  5666654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.21  E-value=0.00023  Score=69.14  Aligned_cols=38  Identities=34%  Similarity=0.593  Sum_probs=33.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||+++|++|||||||+++|+++.|...+.+|++..+
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~  192 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY  192 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee
Confidence            48999999999999999999999999888888886554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.20  E-value=0.0011  Score=65.84  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---HHHcCCCEEE
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV---CHQYNFMSWI  387 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~---~~~~~~~~~~  387 (452)
                      ..+.++|.+++|....-..+...+..++...+..       ++|.+||+||+||.+... .+..++|   ....|+. .+
T Consensus       126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G~~-v~  196 (358)
T 2rcn_A          126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIGYR-VL  196 (358)
T ss_dssp             EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTTCC-EE
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCCCc-EE
Confidence            3478999999886654223455555555544433       378899999999986221 1223333   3456776 89


Q ss_pred             EecCCCCccHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNF  403 (452)
Q Consensus       388 evSAktg~nv~~lf~~  403 (452)
                      ++||+++.+++++...
T Consensus       197 ~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          197 MVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             ECBTTTTBTHHHHHHH
T ss_pred             EEecCCCcCHHHHHHh
Confidence            9999999999988764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.20  E-value=3.3e-05  Score=73.65  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=34.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR  304 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~  304 (452)
                      ++++++|.+|+|||||+|++.+.... ....++++....  .+..   +   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~---~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL---E---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC---T---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe---C---CCEEEEECCCccc
Confidence            69999999999999999999986542 333333333322  1221   2   2477999999764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.20  E-value=0.00011  Score=77.00  Aligned_cols=78  Identities=10%  Similarity=0.063  Sum_probs=54.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec-cccCCCCCCCCCCC---------CCCceeEEEEcC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH-KKYGGRPYGTFSPI---------QTPSYLILITGD  178 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~Il~vgD  178 (452)
                      ++|+++|.+|||||||+++|++..+...+.++++.++....+.. ........++.+..         ......+++|.|
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVD   84 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVA   84 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECB
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEE
Confidence            58999999999999999999998888667778877776655544 22233333333321         222346889999


Q ss_pred             CCCCchhh
Q psy14768        179 STVGKTSY  186 (452)
Q Consensus       179 ~~vGkTsl  186 (452)
                      ...|....
T Consensus        85 a~dg~~~q   92 (537)
T 3izy_P           85 ADDGVMKQ   92 (537)
T ss_dssp             SSSCCCHH
T ss_pred             CCCCccHH
Confidence            98887643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.16  E-value=0.00018  Score=70.49  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCC---CCcCccccCcee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLD---NYKNTVGVDFST  147 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~---~~~~~~~~~~~~  147 (452)
                      ||+++|++|||||||++||.++.+..   .+.+|+|+++..
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~   41 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH   41 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE
Confidence            68999999999999999998776653   378999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.00021  Score=76.20  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      ..++|+|||.+|||||||++||++...
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~  192 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLN  192 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcC
Confidence            358999999999999999999987644

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.15  E-value=0.00019  Score=64.96  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+|+|||++|||||||+|++++..|...+.++.|..+.
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            68999999999999999999988765555666665543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.14  E-value=0.00018  Score=71.84  Aligned_cols=42  Identities=17%  Similarity=0.099  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .|+|||.+|||||||+|++++..+.....+..++|+....+.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~  222 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIP  222 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEE
Confidence            499999999999999999999877544444444455444433

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.12  E-value=0.00018  Score=73.33  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=27.6

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeeec
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~~  152 (452)
                      ..++|+|+|+.|||||||+|+|++..+. ....++.+.+...+.+..
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~   79 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL   79 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE
Confidence            3489999999999999999999998885 445555566655555443

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.10  E-value=0.00049  Score=69.47  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      +||+|||.||||||||||++++...
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~   25 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV   25 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Confidence            4899999999999999999998874

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.03  E-value=0.0004  Score=68.96  Aligned_cols=27  Identities=19%  Similarity=0.425  Sum_probs=24.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .++|++||.+|||||||+|++++..+.
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~  193 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPE  193 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            368999999999999999999987754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.01  E-value=0.0003  Score=67.53  Aligned_cols=28  Identities=36%  Similarity=0.670  Sum_probs=25.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ..++|+|||++|||||||+|+|++..|.
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            3479999999999999999999998885

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=96.78  E-value=0.00039  Score=73.92  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhh
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      ...++|+|||.+|||||||++||++
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Confidence            4468999999999999999999964

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.78  E-value=0.00061  Score=68.54  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ++|+|||.||||||||||++++..+.....++.++++.
T Consensus        23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~   60 (396)
T 2ohf_A           23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN   60 (396)
T ss_dssp             CCEEEECCSSSSHHHHHHHHHC-------------CCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce
Confidence            68999999999999999999998765444444444433

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.73  E-value=0.00018  Score=73.40  Aligned_cols=91  Identities=12%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             eEEEEEEecCCcch--hh-----hhhh-hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECC
Q psy14768        291 PVKLQIWDIAGQDR--YI-----CMSR-VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC  362 (452)
Q Consensus       291 ~~~l~l~DtaG~e~--~~-----~~~~-~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~  362 (452)
                      .+.+.|+||+|...  ..     .+.. ...-..|.++||+|+.....   .......+....       .+..||+||+
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~~-------~~~gVIlTKl  248 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQAS-------PIGSVIITKM  248 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHHC-------SSEEEEEECG
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhccc-------CCcEEEEecc
Confidence            56788999999533  11     1111 11235699999999987533   222334444331       4578899999


Q ss_pred             CCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       363 Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      |...   ....+..+....+.+ +.+++.  |+++
T Consensus       249 D~~a---~~G~als~~~~~g~P-i~fig~--Ge~v  277 (433)
T 3kl4_A          249 DGTA---KGGGALSAVVATGAT-IKFIGT--GEKI  277 (433)
T ss_dssp             GGCS---CHHHHHHHHHHHTCE-EEEEEC--CSSS
T ss_pred             cccc---cchHHHHHHHHHCCC-EEEEEC--CCCh
Confidence            9753   334455566666765 778885  5544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=96.70  E-value=0.0012  Score=68.42  Aligned_cols=78  Identities=15%  Similarity=0.162  Sum_probs=43.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhcc-------CCCCCcCccccCceeeeeeccccCCCCCCCCCCC---------CCCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNK-------FLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI---------QTPS  170 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  170 (452)
                      ..++|+++|..++|||||++++++..       +..+...+++++.....+....+.....|+.+..         ....
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a   97 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   97 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence            45899999999999999999999876       3344444454444333333333333344444321         1233


Q ss_pred             eeEEEEcCCCCCch
Q psy14768        171 YLILITGDSTVGKT  184 (452)
Q Consensus       171 ~~Il~vgD~~vGkT  184 (452)
                      ..+++|.|+..|..
T Consensus        98 D~~ilVvda~~g~~  111 (482)
T 1wb1_A           98 DLALIVVDAKEGPK  111 (482)
T ss_dssp             CEEEEEEETTTCSC
T ss_pred             CEEEEEEecCCCcc
Confidence            57889999888764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.63  E-value=0.001  Score=65.85  Aligned_cols=28  Identities=36%  Similarity=0.670  Sum_probs=25.4

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ..++|+|||++|||||||+|+|++..|.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3479999999999999999999998885

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.59  E-value=0.00066  Score=67.60  Aligned_cols=31  Identities=16%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhh-ccCCCCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQ-NKFLDNY  137 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~-~~~~~~~  137 (452)
                      ..++|+|||++|||||||+|++++ ..|...+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            458999999999999999999655 4444333

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.50  E-value=0.0015  Score=67.70  Aligned_cols=76  Identities=11%  Similarity=0.057  Sum_probs=48.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCCCCC---------CCCceeEEEEcCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPI---------QTPSYLILITGDS  179 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Il~vgD~  179 (452)
                      .+|+++|.+++|||||+++|.+..+......+++.+.....+.+........|+.+..         ......+++|.|.
T Consensus         5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda   84 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA   84 (501)
T ss_dssp             CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEET
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeec
Confidence            5799999999999999999998877655555555554444444333333333333321         1222357888888


Q ss_pred             CCCch
Q psy14768        180 TVGKT  184 (452)
Q Consensus       180 ~vGkT  184 (452)
                      ..|..
T Consensus        85 ~~g~~   89 (501)
T 1zo1_I           85 DDGVM   89 (501)
T ss_dssp             TTBSC
T ss_pred             ccCcc
Confidence            77654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.47  E-value=0.0013  Score=63.70  Aligned_cols=27  Identities=30%  Similarity=0.600  Sum_probs=24.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      ..++|+|||++|||||||+|++++..+
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            357899999999999999999999887

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.0015  Score=59.51  Aligned_cols=27  Identities=15%  Similarity=0.201  Sum_probs=23.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ..+|+++|.+|||||||+++|+...+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~   56 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            368999999999999999999987543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=96.39  E-value=0.00085  Score=69.03  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..++|+++|.+|+|||||+++|++.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~   30 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYK   30 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3589999999999999999999875

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.38  E-value=0.0021  Score=65.55  Aligned_cols=76  Identities=16%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc--cCCC-----------------------------CCcCccccCceeeeeecccc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN--KFLD-----------------------------NYKNTVGVDFSTKLLSHKKY  155 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~  155 (452)
                      ..++|+++|.+|+|||||++||++.  .+..                             +...+++++.....+.+..+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            3589999999999999999999875  2321                             11233444444444455444


Q ss_pred             CCCCCCCCCCCC---------CCceeEEEEcCCCCC
Q psy14768        156 GGRPYGTFSPIQ---------TPSYLILITGDSTVG  182 (452)
Q Consensus       156 ~~~~~~~~~~~~---------~~~~~Il~vgD~~vG  182 (452)
                      ...+.++.+...         .....+++|.|...|
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g  120 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG  120 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC
Confidence            445555554432         233478889998877

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.38  E-value=0.0028  Score=63.66  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccC-CCCCcCccccCce
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFS  146 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~-~~~~~~~~~~~~~  146 (452)
                      .+|.|||.||||||||||.+++..+ .....|+.+++..
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~   59 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE   59 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence            6899999999999999999999876 3444444444443

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.35  E-value=0.00019  Score=74.07  Aligned_cols=101  Identities=13%  Similarity=0.037  Sum_probs=61.1

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--hhhhh-------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--YICMS-------  309 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--~~~~~-------  309 (452)
                      ....|+++|.+|+||||+.++|...... ...++...+........   .+......+||..|++.  +...+       
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~---~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDM---VKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHH---HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhh---ccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999988753221 11122221111000000   11113345889999743  23332       


Q ss_pred             -hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy14768        310 -RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSK  344 (452)
Q Consensus       310 -~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~  344 (452)
                       ..++..+++.++|+|.++. +++....|...+...
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence             4566678888999999987 666667777776654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.30  E-value=0.0029  Score=64.52  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      ..++|+++|.+|+|||||++||++..
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhc
Confidence            45899999999999999999998764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.26  E-value=0.0014  Score=68.61  Aligned_cols=81  Identities=16%  Similarity=0.069  Sum_probs=49.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhcc------------------CC----CCCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNK------------------FL----DNYKNTVGVDFSTKLLSHKKYGGRPYGTFS  164 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (452)
                      ...+|+|||.+|||||||+++|+...                  +.    .+...++++......+.+..+...+.++.+
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            45789999999999999999996211                  11    011133444444444555555445555555


Q ss_pred             CCC---------CCceeEEEEcCCCCCchhhh
Q psy14768        165 PIQ---------TPSYLILITGDSTVGKTSYV  187 (452)
Q Consensus       165 ~~~---------~~~~~Il~vgD~~vGkTsl~  187 (452)
                      ...         .....+++|.|+..|.+...
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t  123 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRT  123 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHH
Confidence            432         22247899999988876443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.26  E-value=0.0039  Score=61.82  Aligned_cols=35  Identities=29%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV  141 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~  141 (452)
                      .+.+|+|||++|||||||+|+|++..|......++
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            34589999999999999999999988753333344

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.20  E-value=0.0025  Score=61.76  Aligned_cols=31  Identities=16%  Similarity=0.465  Sum_probs=21.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhc-cCCCC
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQN-KFLDN  136 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~-~~~~~  136 (452)
                      ...++|+|||++|||||||++++.+. .+...
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~   47 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPER   47 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC-------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCC
Confidence            34589999999999999999998775 55533

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.15  E-value=0.0033  Score=66.91  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             ccEEEeeecccCCcceeeecccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQN  263 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~  263 (452)
                      ..++|+|++|+|||||++.+.+-
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSC
T ss_pred             CeEEEECCCCChHHHHHHHHhCC
Confidence            35999999999999999998874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.13  E-value=0.0023  Score=62.82  Aligned_cols=92  Identities=11%  Similarity=0.042  Sum_probs=53.9

Q ss_pred             EEEEEEecCCcchhhh-hhhh-----hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        292 VKLQIWDIAGQDRYIC-MSRV-----YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~-~~~~-----~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      +.+.++||+|...... +...     ..-..|-.++++|++..   +++......+....       ..-+|++||.|..
T Consensus       212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~-------~it~iilTKlD~~  281 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV-------KIDGIILTKLDAD  281 (328)
T ss_dssp             CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS-------CCCEEEEECGGGC
T ss_pred             chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc-------CCCEEEEeCcCCc
Confidence            3466789999643221 1111     12247889999997765   34434444444331       2347889999964


Q ss_pred             CCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        366 DRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       366 ~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      .   ..-.+..+....+.+ +.+++  +|+++++
T Consensus       282 a---~~G~~l~~~~~~~~p-i~~i~--~Ge~v~d  309 (328)
T 3e70_C          282 A---RGGAALSISYVIDAP-ILFVG--VGQGYDD  309 (328)
T ss_dssp             S---CCHHHHHHHHHHTCC-EEEEE--CSSSTTC
T ss_pred             c---chhHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            3   123345666677766 77777  6776643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.13  E-value=0.0035  Score=63.25  Aligned_cols=79  Identities=10%  Similarity=0.033  Sum_probs=46.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc--------cCCCC---------CcCccccCceeeeeeccccCCCCCCCCCCCC--
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN--------KFLDN---------YKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ--  167 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  167 (452)
                      ..++|+++|.+|+|||||+++|++.        .|...         ...+++++.....+.+......+.|+.+...  
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~   89 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   89 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence            4589999999999999999999873        22210         1233344433333333333333444443321  


Q ss_pred             -------CCceeEEEEcCCCCCchh
Q psy14768        168 -------TPSYLILITGDSTVGKTS  185 (452)
Q Consensus       168 -------~~~~~Il~vgD~~vGkTs  185 (452)
                             .....+++|.|...|...
T Consensus        90 ~~~~~~~~~aD~~ilVvda~~g~~~  114 (405)
T 2c78_A           90 KNMITGAAQMDGAILVVSAADGPMP  114 (405)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCH
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcH
Confidence                   123468889998888654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=96.11  E-value=0.0054  Score=63.11  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhh
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      ..++|+++|..++|||||++||+.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHH
Confidence            458999999999999999999975

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.09  E-value=0.0049  Score=62.50  Aligned_cols=29  Identities=17%  Similarity=0.484  Sum_probs=25.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .-.++|+|||++|||||||+|+|++..+.
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~   57 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLY   57 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            44589999999999999999999998774

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.94  E-value=0.003  Score=62.35  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=22.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .+|+|||.+|||||||+|++++.++.
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~  184 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPK  184 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCE
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCc
Confidence            36899999999999999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.89  E-value=0.0038  Score=62.21  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      ++|+|||.||||||||||++++..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999999865

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=95.89  E-value=0.0069  Score=63.34  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=45.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhcc--CC---------------C-----CCcCccccCceeeeeeccccCCCCCCCCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNK--FL---------------D-----NYKNTVGVDFSTKLLSHKKYGGRPYGTFS  164 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~--~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (452)
                      ...+|+|+|.+|+|||||+++|+...  +.               .     +...++++......+.+..+...+.++.+
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            45799999999999999999998631  10               0     01122233333333444444444445544


Q ss_pred             CCC---------CCceeEEEEcCCCCCchh
Q psy14768        165 PIQ---------TPSYLILITGDSTVGKTS  185 (452)
Q Consensus       165 ~~~---------~~~~~Il~vgD~~vGkTs  185 (452)
                      ...         .....+++|.|+..|...
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~  121 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED  121 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCH
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchH
Confidence            432         223468899998887653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.73  E-value=0.0068  Score=64.04  Aligned_cols=26  Identities=15%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      ...|+|||.||||||||+|++++...
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~   63 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKK   63 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCC
Confidence            47899999999999999999998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=95.73  E-value=0.0059  Score=60.88  Aligned_cols=66  Identities=14%  Similarity=0.079  Sum_probs=41.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeeccccCCCCCCCCCCCC---------CCceeEEEEcCCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ---------TPSYLILITGDST  180 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Il~vgD~~  180 (452)
                      +|+++|.+|+|||||+++|+      +...|+  +.....+.+..+...+.|+.+...         .....+++|+| .
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi--~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~   93 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSS--DITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P   93 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEES--SSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEE--EeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence            89999999999999999998      223333  333333444443344444444322         12346888888 7


Q ss_pred             CCch
Q psy14768        181 VGKT  184 (452)
Q Consensus       181 vGkT  184 (452)
                      .|..
T Consensus        94 ~g~~   97 (370)
T 2elf_A           94 QGLD   97 (370)
T ss_dssp             TCCC
T ss_pred             CCCc
Confidence            7764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.73  E-value=0.0064  Score=65.74  Aligned_cols=27  Identities=30%  Similarity=0.763  Sum_probs=24.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .++|+|||++|||||||+|++++..+.
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~   95 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLL   95 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            379999999999999999999998765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.68  E-value=0.0072  Score=63.54  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=25.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ..++|+|||.+|||||||+|++++..+.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence            3478999999999999999999998874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=95.56  E-value=0.011  Score=63.94  Aligned_cols=81  Identities=10%  Similarity=0.063  Sum_probs=46.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhh--ccCCC-----------CC-----cCccccCceeeeeeccccCCCCCCCCCCCC
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQ--NKFLD-----------NY-----KNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ  167 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (452)
                      ....+|+|||.+|+|||||+++++.  ..+..           ++     ..++++......+.+..+...+.++.+...
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            4568999999999999999999985  22210           00     122222333333444444444555555432


Q ss_pred             C---------CceeEEEEcCCCCCchhh
Q psy14768        168 T---------PSYLILITGDSTVGKTSY  186 (452)
Q Consensus       168 ~---------~~~~Il~vgD~~vGkTsl  186 (452)
                      .         ....+++|.|...|.+..
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~  115 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQ  115 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHH
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHH
Confidence            1         123688999988887654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=95.55  E-value=0.016  Score=59.05  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.5

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ..-|+|+|++++|||+|+|.+++
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Confidence            35688999999999999999985

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=95.50  E-value=0.0061  Score=61.33  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+++|.+++|||||+++|++.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhCh
Confidence            479999999999999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.44  E-value=0.0074  Score=59.67  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|.||+|||||+|++++.
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            68999999999999999999874

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=95.10  E-value=0.016  Score=62.58  Aligned_cols=79  Identities=13%  Similarity=-0.048  Sum_probs=46.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCC--------------------CCcCccccCceeeeeeccccCCCCCCCCCC
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLD--------------------NYKNTVGVDFSTKLLSHKKYGGRPYGTFSP  165 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (452)
                      ....+|+|||.+|+|||||+++|+......                    +...|++  .....+.+..+...+.++.+.
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKDHRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECCeEEEEEECcCc
Confidence            456899999999999999999998522110                    1223333  333334444444445555554


Q ss_pred             CCC---------CceeEEEEcCCCCCchhh
Q psy14768        166 IQT---------PSYLILITGDSTVGKTSY  186 (452)
Q Consensus       166 ~~~---------~~~~Il~vgD~~vGkTsl  186 (452)
                      ..-         ....+++|.|+..|.+.-
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~  117 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQ  117 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchh
Confidence            321         123688888988876643

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=95.01  E-value=0.033  Score=59.00  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .++|+|+|.+|+|||||+++|++..+.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~   31 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVA   31 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCc
Confidence            368999999999999999999987665

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=94.96  E-value=0.016  Score=63.96  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ....+|+|||.+|||||||+++|+..
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999999999999999874

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=94.86  E-value=0.02  Score=57.70  Aligned_cols=40  Identities=15%  Similarity=0.365  Sum_probs=25.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc---cCCCCCcC--ccccCce
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN---KFLDNYKN--TVGVDFS  146 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~---~~~~~~~~--~~~~~~~  146 (452)
                      ..++|+++|..++|||||+++|++.   ++..+..+  |++..|.
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~   51 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYA   51 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccc
Confidence            3489999999999999999999853   44445555  4444443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.72  E-value=0.012  Score=60.00  Aligned_cols=80  Identities=15%  Similarity=0.090  Sum_probs=46.1

Q ss_pred             eEEEEEEecCCcchhh-hhhh-----hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCC
Q psy14768        291 PVKLQIWDIAGQDRYI-CMSR-----VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCD  363 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~-~~~~-----~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~D  363 (452)
                      .+.+.|+||||.-.+. .+..     ..+..+|.+++|+|+.....   .......+...        .+ .-+|+||+|
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~--------l~i~gvVlnK~D  251 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA--------LPLTGVVLTKVD  251 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH--------SCCCCEEEECTT
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc--------CCCeEEEEecCC
Confidence            4678999999964332 1211     22457899999999986532   22222333322        44 347899999


Q ss_pred             CCCCcccHHHHHHHHHHcCCC
Q psy14768        364 LPDRQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       364 l~~~~~~~e~~~~~~~~~~~~  384 (452)
                      ...+.   ..+..+....+.+
T Consensus       252 ~~~~~---g~~l~i~~~~~~P  269 (433)
T 2xxa_A          252 GDARG---GAALSIRHITGKP  269 (433)
T ss_dssp             SSSCC---THHHHHHHHHCCC
T ss_pred             CCccH---HHHHHHHHHHCCC
Confidence            75321   2334555555543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.67  E-value=0.016  Score=55.01  Aligned_cols=27  Identities=26%  Similarity=0.536  Sum_probs=23.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .|.++|||.+|+|||||+|.+++...+
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            378999999999999999999986543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=94.66  E-value=0.02  Score=57.61  Aligned_cols=25  Identities=32%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+++|.+|||||||+++|++..
T Consensus         8 ~~~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A            8 EVNIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcc
Confidence            4799999999999999999999743

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=94.62  E-value=0.032  Score=56.14  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=26.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhc---cCCCCCcCcc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQN---KFLDNYKNTV  141 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~---~~~~~~~~~~  141 (452)
                      ...++|+++|..++|||||+++|++.   ++..+...++
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~gi   46 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGI   46 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCc
Confidence            34589999999999999999999854   3444555533

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.51  E-value=0.015  Score=60.03  Aligned_cols=139  Identities=17%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             EEEeeecccCCcceeeeccc-cccccccCCcceeeeEE---------------EEEEeeecCC-----------------
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ-NKFLDNYKNTVGVDFST---------------KLLSHKKYGG-----------------  289 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~-~~~~~~~~~t~~~d~~~---------------~~i~~~~~~~-----------------  289 (452)
                      ++|+|.+|+|||||++.+.+ -........-.+.|...               ..+..   ..                 
T Consensus       296 I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~---Q~~~~~p~~tV~e~l~~a~  372 (503)
T 2yhs_A          296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIA---QHTGADSASVIFDAIQAAK  372 (503)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEEC---CSTTCCHHHHHHHHHHHHH
T ss_pred             EEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEe---cccCcCHHHHHHHHHHHHH


Q ss_pred             -eeEEEEEEecCCcchhhhhhhhhhcC------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE
Q psy14768        290 -RPVKLQIWDIAGQDRYICMSRVYYQN------------SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL  356 (452)
Q Consensus       290 -~~~~l~l~DtaG~e~~~~~~~~~i~~------------ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii  356 (452)
                       ..+.+.|+||+|..........-+++            .+-++||+|++.+   ++.......+....       -...
T Consensus       373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG---q~al~~ak~f~~~~-------~itg  442 (503)
T 2yhs_A          373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---QNAVSQAKLFHEAV-------GLTG  442 (503)
T ss_dssp             HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT---HHHHHHHHHHHHHT-------CCSE
T ss_pred             hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc---HHHHHHHHHHHhhc-------CCCE


Q ss_pred             EEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       357 lV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|+||.|   .....-.+..+...++.. +.++.  +|++++++
T Consensus       443 vIlTKLD---~takgG~~lsi~~~~~~P-I~fig--~Ge~vdDL  480 (503)
T 2yhs_A          443 ITLTKLD---GTAKGGVIFSVADQFGIP-IRYIG--VGERIEDL  480 (503)
T ss_dssp             EEEECGG---GCSCCTHHHHHHHHHCCC-EEEEE--CSSSGGGE
T ss_pred             EEEEcCC---CcccccHHHHHHHHHCCC-EEEEe--cCCChhhc

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=94.32  E-value=0.026  Score=63.71  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..++|+++|.+++|||||+++|++.
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence            4589999999999999999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.91  E-value=0.029  Score=49.76  Aligned_cols=23  Identities=39%  Similarity=0.673  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +++|+|.+|+|||||++.+++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.81  E-value=0.03  Score=49.37  Aligned_cols=22  Identities=14%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=93.74  E-value=0.056  Score=52.30  Aligned_cols=133  Identities=16%  Similarity=0.056  Sum_probs=0.0

Q ss_pred             EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC---------------------------------
Q psy14768        243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG---------------------------------  289 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~---------------------------------  289 (452)
                      ++++|.+|+||||++..+.      ......+..........   ..                                 
T Consensus       107 i~ivG~~GsGKTTl~~~LA------~~l~~~g~kV~lv~~D~---~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~  177 (306)
T 1vma_A          107 IMVVGVNGTGKTTSCGKLA------KMFVDEGKSVVLAAADT---FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD  177 (306)
T ss_dssp             EEEECCTTSSHHHHHHHHH------HHHHHTTCCEEEEEECT---TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHH------HHHHhcCCEEEEEcccc---ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH


Q ss_pred             -------eeEEEEEEecCCcchhhhhhhhhhcC------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCC
Q psy14768        290 -------RPVKLQIWDIAGQDRYICMSRVYYQN------------SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNG  350 (452)
Q Consensus       290 -------~~~~l~l~DtaG~e~~~~~~~~~i~~------------ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~  350 (452)
                             ..+.+.|+||+|...........+..            .|.+++|+|++  ...+.+..........      
T Consensus       178 al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~--t~~~~l~~a~~~~~~~------  249 (306)
T 1vma_A          178 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT--TGQNGLVQAKIFKEAV------  249 (306)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG--GHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC--CCHHHHHHHHHHHhcC------


Q ss_pred             CCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        351 AMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       351 ~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                        ...-+|+||.|   .....-.+..+....+.+ +.+++  .|++++++
T Consensus       250 --~i~gvVlTk~D---~~~~gG~~l~~~~~~~~P-i~~i~--~Ge~~~dl  291 (306)
T 1vma_A          250 --NVTGIILTKLD---GTAKGGITLAIARELGIP-IKFIG--VGEKAEDL  291 (306)
T ss_dssp             --CCCEEEEECGG---GCSCTTHHHHHHHHHCCC-EEEEE--CSSSGGGE
T ss_pred             --CCCEEEEeCCC---CccchHHHHHHHHHHCCC-EEEEe--CCCChhhc

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.71  E-value=0.032  Score=56.50  Aligned_cols=27  Identities=26%  Similarity=0.621  Sum_probs=23.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .+.++|||.+|+|||||+|.+++..+.
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~   68 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFE   68 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCcccc
Confidence            467999999999999999999987543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=93.52  E-value=0.052  Score=58.28  Aligned_cols=29  Identities=3%  Similarity=0.038  Sum_probs=24.9

Q ss_pred             cCCCEEEEecCCCCccHHHHHHHHHHHHH
Q psy14768        381 YNFMSWIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       381 ~~~~~~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      ..+.+++++||++|.||+++|+.+.+.+-
T Consensus       245 ~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp  273 (665)
T 2dy1_A          245 GLLYPVALASGEREIGVLPLLELILEALP  273 (665)
T ss_dssp             TSCEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCeeEEEEeecccCcCHHHHHHHHHHhCC
Confidence            34567999999999999999999988764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.45  E-value=0.038  Score=49.98  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++++++.
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=93.41  E-value=0.067  Score=57.82  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=22.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhh
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      ....+|+|||..|+|||||+++|+.
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999975

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.19  E-value=0.043  Score=49.26  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|||.+|+|||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999863

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.18  E-value=0.047  Score=53.87  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      ++|+|+|.||||||||++++....
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999997643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.15  E-value=0.061  Score=51.76  Aligned_cols=124  Identities=13%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             EEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCC---------------------------------
Q psy14768        243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGG---------------------------------  289 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~---------------------------------  289 (452)
                      ++++|.+|+||||++..+...-....-....-.+.          +-                                 
T Consensus       108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~----------D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al  177 (296)
T 2px0_A          108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT----------DTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAK  177 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC----------CCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec----------CcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHH


Q ss_pred             ---eeEEEEEEecCCcchhhhhhhhhhc------CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEE
Q psy14768        290 ---RPVKLQIWDIAGQDRYICMSRVYYQ------NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS  360 (452)
Q Consensus       290 ---~~~~l~l~DtaG~e~~~~~~~~~i~------~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~N  360 (452)
                         ..+.+.|+||+|........-..+.      ..+.+++|+|++  ...+++..+...+...        ...-+|.|
T Consensus       178 ~~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at--~~~~~~~~~~~~~~~l--------~~~giVlt  247 (296)
T 2px0_A          178 ELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT--AKYEDMKHIVKRFSSV--------PVNQYIFT  247 (296)
T ss_dssp             HHGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT--BCHHHHHHHTTTTSSS--------CCCEEEEE
T ss_pred             HHhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC--CCHHHHHHHHHHHhcC--------CCCEEEEe


Q ss_pred             CCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       361 K~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      |.|   .......+..+....+.+ +.+++
T Consensus       248 k~D---~~~~~g~~~~~~~~~~~p-i~~i~  273 (296)
T 2px0_A          248 KID---ETTSLGSVFNILAESKIG-VGFMT  273 (296)
T ss_dssp             CTT---TCSCCHHHHHHHHTCSCC-CSEEC
T ss_pred             CCC---cccchhHHHHHHHHHCcC-EEEEE

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.06  E-value=0.084  Score=49.06  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ...++++|.+|||||||++++...
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~   37 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRY   37 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHH
Confidence            467999999999999999999843

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.02  E-value=0.046  Score=54.07  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|||||||+|.+.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999998754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=92.98  E-value=0.065  Score=56.70  Aligned_cols=26  Identities=15%  Similarity=0.323  Sum_probs=20.9

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ....+|+|||..++|||||++||++.
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~   29 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEY   29 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhc
Confidence            35678999999999999999999863

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=92.64  E-value=0.05  Score=59.10  Aligned_cols=28  Identities=32%  Similarity=0.590  Sum_probs=25.3

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      ..+++|++||++|+|||||+|.+++..|
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            3457999999999999999999999877

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=92.40  E-value=0.06  Score=48.16  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|+|.+||||+||+++++.+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.37  E-value=0.066  Score=52.48  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..++|+|.+|+|||||++.+.+-
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999853

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=92.31  E-value=0.046  Score=57.91  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ...+|+|||..++|||||++||+..
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~   27 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQI   27 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=92.30  E-value=0.067  Score=49.07  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|+|||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            48899999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.09  E-value=0.03  Score=54.31  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|||||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            58999999999999999998643

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.04  E-value=0.26  Score=43.66  Aligned_cols=85  Identities=13%  Similarity=-0.035  Sum_probs=55.5

Q ss_pred             EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccH
Q psy14768        292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEI  371 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~  371 (452)
                      +.+.|+|+++.-  .......+..+|.+|++...+...  ..+..+...+.....  .....++.+|+|++|...  ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~~vv~N~~~~~~--~~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA--YSRKVEARFLITRKIEMA--TML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC--GGGCCEEEEEECSBCTTE--EEE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH--hCCCCcEEEEEeccCCCc--hHH
Confidence            457789999864  333455677899999999977544  677777777765411  134567799999998532  223


Q ss_pred             HHHHHHHHHcCCC
Q psy14768        372 NEIEAVCHQYNFM  384 (452)
Q Consensus       372 e~~~~~~~~~~~~  384 (452)
                      .+..++++.++..
T Consensus       148 ~~~~~~l~~~~~~  160 (206)
T 4dzz_A          148 NVLKESIKDTGVK  160 (206)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCc
Confidence            4455666666543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=92.01  E-value=0.077  Score=48.41  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|||.+|+|||||++.+.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.00  E-value=0.069  Score=53.90  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      ..++|||++|+|||||+|-+++-..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3689999999999999999998543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=91.95  E-value=0.082  Score=47.74  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|+|.+|+|||||++.+.+.
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=91.94  E-value=0.077  Score=46.71  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++.+.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=91.93  E-value=0.084  Score=53.32  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .|+|||.+|+|||||++++++...
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~  182 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHP  182 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCc
Confidence            489999999999999999987643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=91.86  E-value=0.082  Score=47.07  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4789999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=91.66  E-value=0.092  Score=45.14  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+||||+.+++...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=91.64  E-value=0.09  Score=47.33  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|+|||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.54  E-value=0.082  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++++|.+|+|||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998644

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=91.50  E-value=0.094  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+|||||.+++...
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4799999999999999999764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=91.28  E-value=0.11  Score=46.83  Aligned_cols=23  Identities=13%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|.+|.|||||++.+.+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=91.26  E-value=0.11  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+++|.+|+|||||++.+.+.
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            57899999999999999999754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=91.06  E-value=0.1  Score=45.55  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q psy14768        110 KILVIGDSTVGKTSYVQGFV  129 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~  129 (452)
                      -++|+|.+|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.03  E-value=0.11  Score=50.15  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q psy14768        110 KILVIGDSTVGKTSYVQGFV  129 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~  129 (452)
                      .++++|.+|||||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=90.91  E-value=0.12  Score=44.72  Aligned_cols=22  Identities=41%  Similarity=0.717  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|.|.+|+|||+|++.+...
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=90.81  E-value=0.12  Score=46.47  Aligned_cols=22  Identities=18%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +|+|.|.+|+||||+.+++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=90.76  E-value=0.13  Score=44.49  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+||||+++.+.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=90.76  E-value=0.12  Score=46.47  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +|+|.|.+|+||||+..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.73  E-value=0.13  Score=45.42  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..++|+|.+|+|||||++++++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35889999999999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=90.68  E-value=0.15  Score=52.02  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ...-|.|+|.+++|||+|+|++++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3567999999999999999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=90.57  E-value=0.12  Score=46.25  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +++|+|.+|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=90.44  E-value=0.15  Score=45.33  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|+||||+++.+.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=90.42  E-value=0.17  Score=43.82  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .|+|+|-||+||||+.+++..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            589999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=90.26  E-value=0.15  Score=45.17  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+||||+.+.+.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999763

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=90.13  E-value=0.15  Score=45.46  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .+|+|+|.+|+||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999987

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=90.05  E-value=0.17  Score=44.25  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|.|-+|+||||+.+.+...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=90.03  E-value=0.16  Score=45.42  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++.+.+.
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999999764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=90.02  E-value=0.16  Score=45.33  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+||||+.+.+.+.
T Consensus        20 ~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           20 SIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.00  E-value=0.16  Score=46.62  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|-+|+||||+.+.+...
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=89.87  E-value=0.17  Score=44.58  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .++|+|.+|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=89.84  E-value=0.17  Score=45.27  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=89.79  E-value=0.099  Score=46.00  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|||.+|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=89.72  E-value=0.18  Score=46.66  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .|+|+|.+|+|||||++.+..
T Consensus        29 ~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           29 RAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999984

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=89.71  E-value=0.15  Score=44.58  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|+|||+|++.+.+.-
T Consensus        40 ~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           40 GLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47999999999999999887643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=89.71  E-value=0.18  Score=45.58  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .+|+|+|.+|+||||+++.+.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=89.71  E-value=0.19  Score=44.86  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+||||+.+.+.+.
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=89.55  E-value=0.18  Score=48.65  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|||.+|.|||||++-+.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=89.54  E-value=0.18  Score=43.14  Aligned_cols=19  Identities=26%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHH
Q psy14768        110 KILVIGDSTVGKTSYVQGF  128 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~  128 (452)
                      .|+|+|.+|+||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999999

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=89.51  E-value=0.17  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|.+|+|||||++.+++.-
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998743

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=89.48  E-value=1.3  Score=39.75  Aligned_cols=83  Identities=7%  Similarity=-0.050  Sum_probs=55.0

Q ss_pred             EEEEEEecCCc-chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCccc
Q psy14768        292 VKLQIWDIAGQ-DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVE  370 (452)
Q Consensus       292 ~~l~l~DtaG~-e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~  370 (452)
                      +.+.++||++. ...  .....+..+|.+|++...+ ..+...+..++..+...      .+.++.+|+|+.|.... ..
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~-~~  137 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL------GNNRFRILLTIIPPYPS-KD  137 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT------CSSSEEEEECSBCCTTS-CH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc------cCCCEEEEEEecCCccc-hH
Confidence            45778899876 322  2345678999999998865 56667776766666653      13668899999986420 22


Q ss_pred             HHHHHHHHHHcCCC
Q psy14768        371 INEIEAVCHQYNFM  384 (452)
Q Consensus       371 ~e~~~~~~~~~~~~  384 (452)
                      ..++.+++++++..
T Consensus       138 ~~~~~~~l~~~g~~  151 (209)
T 3cwq_A          138 GDEARQLLTTAGLP  151 (209)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCc
Confidence            45556666666643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=89.19  E-value=0.22  Score=43.11  Aligned_cols=23  Identities=17%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..++|+|.+|+||||+++.+.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            35899999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=88.99  E-value=0.15  Score=43.96  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      -++|.|.+|+|||+|+..+...-
T Consensus        45 ~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           45 NPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887643

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=88.97  E-value=0.054  Score=47.95  Aligned_cols=21  Identities=48%  Similarity=0.768  Sum_probs=19.2

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      +++++|++|+|||||++.+.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=88.86  E-value=0.24  Score=43.25  Aligned_cols=22  Identities=32%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+|+||||+.+.+...
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=88.82  E-value=0.23  Score=42.99  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|+.|.|||||++-+++-.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998765

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=88.81  E-value=0.26  Score=43.01  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=88.65  E-value=0.23  Score=43.00  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|-+|+||||+.+.+...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=88.54  E-value=0.24  Score=45.85  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++-+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=88.51  E-value=0.22  Score=45.16  Aligned_cols=23  Identities=13%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +.|+|+|.||+||+|...+++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=88.47  E-value=0.23  Score=44.67  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|+|++|+|||||++.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3788999999999999999854

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=88.47  E-value=0.23  Score=44.72  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +|+|.|.+|+||||+.+++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=88.46  E-value=0.26  Score=43.00  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      ..|+|.|-+|+||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=88.38  E-value=0.17  Score=46.18  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCchHHHHHHHh-hc
Q psy14768        110 KILVIGDSTVGKTSYVQGFV-QN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~-~~  131 (452)
                      .++|+|.+|+|||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48899999999999999998 54

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=88.37  E-value=0.25  Score=46.07  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++-+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=88.35  E-value=0.29  Score=43.67  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +.|+|+|.+|+||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=88.35  E-value=0.28  Score=43.84  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|.+|+||||+++.+.+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	452
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-33
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-11
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-32
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-11
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-10
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-30
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-09
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-09
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-29
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-11
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-29
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-07
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	9e-28
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-07
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-06
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-27
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-08
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-07
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-26
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-08
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	9e-07
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-26
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-07
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-25
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-06
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-24
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-06
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-05
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-24
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-06
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-23
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-08
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-22
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	7e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-05
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-22
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-06
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-05
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-21
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-07
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	9e-05
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-21
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-06
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-05
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-21
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-07
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-05
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	7e-21
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-07
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-06
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-20
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-05
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-20
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	8e-06
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-04
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-19
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-19
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-05
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-19
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-05
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-19
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-06
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-05
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-18
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-06
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	7e-05
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-18
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-06
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-05
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-18
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-06
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-05
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-17
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-06
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-04
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-17
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-06
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-04
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-17
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.003
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-16
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-04
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	0.001
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-16
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	6e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	0.001
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-16
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-07
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-05
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-16
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	9e-06
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-16
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-05
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-16
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-04
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-15
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-06
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-04
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-15
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-06
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	7e-05
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-15
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-07
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-15
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	6e-04
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-15
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-15
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-14
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-07
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-13
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-12
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.003
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-12
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-12
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-04
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-12
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-06
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-11
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-04
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-11
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.002
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-11
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-06
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-05
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-10
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-04
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-09
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-04
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-09
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-04
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-08
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-04
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	0.002
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-08
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (303), Expect = 4e-33
 Identities = 49/176 (27%), Positives = 96/176 (54%), Gaps = 9/176 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ GDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+ +KLQIWD A
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDTA 63

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ + G ++++D+TN KSF+++  W  +++     D   +   +L   
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD---VEKMILGNK 120

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
                 RQV     E +   Y  + ++E S+K ++ +E++   L   I    +M++
Sbjct: 121 CDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK--AKMDK 173

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.2 bits (145), Expect = 2e-11
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           +L+ GDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+ +KLQIWD 
Sbjct: 9   LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRIKLQIWDT 62

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (126), Expect = 6e-09
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           + K+L+IGDS VGKT  +  F ++ F   + +T+G+DF  + +   +  G+  
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI---ELDGKRI 55

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (300), Expect = 1e-32
 Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQIWD AGQ
Sbjct: 5   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWDTAGQ 61

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++  YY+ + G I+++D+T+ ++F ++ QW   ++     +       LL+ +K 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA----QLLLVGNKS 117

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           D+  R V  ++ EA+  +   + +IE S+K    + +    L   I
Sbjct: 118 DMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLI 162

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           IL+ GDS VGK+  +  FV++KF  ++  T+G+DF  K +      G+ VKLQIWD 
Sbjct: 5   ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV---DINGKKVKLQIWDT 58

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (135), Expect = 4e-10
 Identities = 19/42 (45%), Positives = 31/42 (73%)

Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           +++KIL+IGDS VGK+  +  FV++KF  ++  T+G+DF  K
Sbjct: 1   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK 42

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (282), Expect = 6e-30
 Identities = 58/192 (30%), Positives = 106/192 (55%), Gaps = 12/192 (6%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD A
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDTA 63

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++  YY+ S G II++D+T+++SF  V  W  ++D        + +  LL+ +
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGN 119

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE---- 416
           KCDL D++V   ++       N M ++E S+ +   +ED+   +  +I  S   +     
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 417 -EAVERKSSIRL 427
            +  E K ++ L
Sbjct: 180 TQKKEDKGNVNL 191

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           +L+ G+S VGK+  +  F  + + ++Y +T+GVDF  K +   +  G+ VKLQIWD 
Sbjct: 9   LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV---ELDGKTVKLQIWDT 62

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 103 SDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           S+ + + K+L+IG+S VGK+  +  F  + + ++Y +T+GVDF  K
Sbjct: 1   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK 46

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 2e-29
 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ G++ VGKT  V+ F Q  F      T+GVDF  K +   +  G  VKLQIWD A
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDTA 62

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +++ YY++++  I+ +D+T  +SF  + +W  +++          +  +L+ +
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGN 118

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKR 413
           K DL +R+    +      +   M ++E S+KE   +E     L  R+I   R
Sbjct: 119 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 5e-11
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           I++ G++ VGKT  V+ F Q  F      T+GVDF  K +   +  G  VKLQIWD 
Sbjct: 8   IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV---EINGEKVKLQIWDT 61

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           D + + KI++IG++ VGKT  V+ F Q  F      T+GVDF  K
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK 45

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 7e-29
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 7/179 (3%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           + T  ILI G+S VGK+S +  F  + F      T+GVDF  K        G   KL IW
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK---TISVDGNKAKLAIW 61

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+R+  ++  YY+ + G I+++D+T R +F    +  + L+          +  +L
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFV---KLDNWLNELETYCTRNDIVNML 118

Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           + +K D  +R+V+ NE      +++ M +IE S+K    ++ +   LV++II +  + E
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 176

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           D  T LKIL+IG+S VGK+S +  F  + F      T+GVDF  K
Sbjct: 3   DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK 47

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
            +  ILI G+S VGK+S +  F  + F      T+GVDF  K        G   KL IWD
Sbjct: 6   TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK---TISVDGNKAKLAIWD 62

Query: 229 I 229
            
Sbjct: 63  T 63

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 9e-28
 Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD  VGK+S +  +V NKF     +T+GV+F  K     +  G  V +QIWD A
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK---DLEVDGHFVTMQIWDTA 63

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   +Y+ SD C++ F + + +SF+++  WK +      +      P ++L +
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           K D+ +RQV   E +A C       + E S+K+   +  +    V R++
Sbjct: 124 KIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
            ++ K++++GD  VGK+S +  +V NKF     +T+GV+F
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF 43

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 226
           ++  + +++ GD  VGK+S +  +V NKF     +T+GV+F  K     +  G  V +QI
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK---DLEVDGHFVTMQI 59

Query: 227 WDI 229
           WD 
Sbjct: 60  WDT 62

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (259), Expect = 6e-27
 Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 7/169 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ILI G+S+VGKTS++  +  + F   + +TVG+DF  K         + +KLQIWD A
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK---TIYRNDKRIKLQIWDTA 62

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G I+M+D+TN +SF +V  W           +      LL+ +
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ----IKTYSWDNAQVLLVGN 118

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           KCD+ D +V  +E       +    + E S+K+++ ++ +   LVD I 
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           ILI G+S+VGKTS++  +  + F   + +TVG+DF  K         + +KLQIWD 
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK---TIYRNDKRIKLQIWDT 61

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           + + + KIL+IG+S+VGKTS++  +  + F   + +TVG+DF  K
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 45

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-26
 Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 12/181 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 295
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K +       +        V LQ
Sbjct: 8   LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67

Query: 296 IWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPC 355
           +WD AGQ+R+  ++  +++++ G ++MFDLT+++SF +V  W   L +    +N  +   
Sbjct: 68  LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI--V 125

Query: 356 LLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           L+         R+V   +   +  +Y  + + E S+     +E ++  L+D I+  KRME
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM--KRME 182

Query: 416 E 416
           +
Sbjct: 183 Q 183

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           D + ++K+L +GDS VGKT+++  +  NKF   +  TVG+DF  K
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREK 45

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 9e-07
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL-------SHKKYGGRPVKLQ 225
           +L  GDS VGKT+++  +  NKF   +  TVG+DF  K +       +        V LQ
Sbjct: 8   LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67

Query: 226 IWDI 229
           +WD 
Sbjct: 68  LWDT 71

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 6e-26
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           + +++ GDS VGKT  +  F    FL   + +TVG+DF  K        G  VKLQ+WD 
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK---VLDVDGVKVKLQMWDT 63

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+R+  ++  YY+++   ++++D+TN+ SF+++  W  ++          +   LL  
Sbjct: 64  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA---QHDVALMLLGN 120

Query: 360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
                 +R V+  + E +  +Y  + ++E S+K  L ++ +   +   +
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKEL 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 170 SYLILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWD 228
           ++ +++ GDS VGKT  +  F    FL   + +TVG+DF  K        G  VKLQ+WD
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK---VLDVDGVKVKLQMWD 62

Query: 229 I 229
            
Sbjct: 63  T 63

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFST 147
             K++++GDS VGKT  +  F    FL   + +TVG+DF  
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN 46

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 6e-25
 Identities = 45/169 (26%), Positives = 94/169 (55%), Gaps = 7/169 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+     +  G+ +K QIWD A
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR---SIQVDGKTIKAQIWDTA 61

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+RY  ++  YY+ + G ++++D+    ++E+V +W  +L         + +  +L+ +
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGN 117

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           K DL   +    +      + N +S+IE S+ +   +E++   ++  I 
Sbjct: 118 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 16/38 (42%), Positives = 28/38 (73%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           + K+++IGDS VGK++ +  F +N+F    K+T+GV+F
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 41

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           +++ GDS VGK++ +  F +N+F    K+T+GV+F+T+     +  G+ +K QIWD 
Sbjct: 7   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR---SIQVDGKTIKAQIWDT 60

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 5e-24
 Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 7/168 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  +I GD  VGK+  +  F + KF+ +  +T+GV+F T+     +  G+ +KLQIWD A
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR---IIEVSGQKIKLQIWDTA 61

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++R YY+ + G ++++D+T R ++  +  W  D  +            +L+ +
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIILIGN 117

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL  ++    E      + N + ++E S+K    +ED+      +I
Sbjct: 118 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           + K ++IGD  VGK+  +  F + KF+ +  +T+GV+F T
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT 43

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           +  +I GD  VGK+  +  F + KF+ +  +T+GV+F T+     +  G+ +KLQIWD 
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR---IIEVSGQKIKLQIWDT 60

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 7e-24
 Identities = 46/175 (26%), Positives = 94/175 (53%), Gaps = 9/175 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  L+ G++  GK+  +  F++ KF D+  +T+GV+F +K       GG+ VKLQIWD A
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK---IINVGGKYVKLQIWDTA 62

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  ++R YY+ + G ++++D+T+R+++ ++  W  D      +     +  +L  +
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCGN 118

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K DL   +       +   Q N + ++E S+     +E++      +I+   ++E
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL--NKIE 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           +  L+ G++  GK+  +  F++ KF D+  +T+GV+F +K       GG+ VKLQIWD 
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK---IINVGGKYVKLQIWDT 61

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 31/46 (67%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK 153
           + K LVIG++  GK+  +  F++ KF D+  +T+GV+F +K+++  
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG 50

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.1 bits (235), Expect = 1e-23
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 3/178 (1%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK         R V +QIWD AGQ
Sbjct: 5   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDTAGQ 61

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C+++FD+T   +F+++  W+ +   +    +    P ++L +K 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVE 420
           DL +RQV     +A C+  N + + E S+KE + +E +   +    +  +   E   E
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (120), Expect = 4e-08
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           LK++++GDS VGKTS +  +V  KF + YK T+G DF
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 39

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           ++I GDS VGKTS +  +V  KF + YK T+G DF TK         R V +QIWD 
Sbjct: 5   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK---EVMVDDRLVTMQIWDT 58

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 1e-22
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ G+  VGKTS V  + +NKF D +  T+G  F TK       GG+ V L IWD A
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK---KLNIGGKRVNLAIWDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +  +YY++S+G I+++D+T+  SF+ V  W  +L           +   ++ +
Sbjct: 61  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGN 116

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           K DL   +    +      +         S+K++  IE+    L  R+I
Sbjct: 117 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
            K++++G+  VGKTS V  + +NKF D +  T+G  F TK
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK 43

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 170 SYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
           +Y   +++ G+  VGKTS V  + +NKF D +  T+G  F TK       GG+ V L IW
Sbjct: 1   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK---KLNIGGKRVNLAIW 57

Query: 228 DIYC 231
           D   
Sbjct: 58  DTAG 61

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 4e-22
 Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           +  +I GD+ VGK+  +  F   +F   +  T+GV+F  +        G+ +KLQIWD A
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---MVNIDGKQIKLQIWDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ +  ++R YY+ + G ++++D+T R++F  +  W  D          + +  +L+ +
Sbjct: 61  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIMLIGN 116

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           K DL  R+    E      + + + ++E S+K    +E++       I   +++++
Sbjct: 117 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY--RKIQQ 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           + K ++IGD+ VGK+  +  F   +F   +  T+
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 36

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 170 SYL--ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 227
           SYL   +I GD+ VGK+  +  F   +F   +  T+GV+F  +        G+ +KLQIW
Sbjct: 1   SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---MVNIDGKQIKLQIW 57

Query: 228 DI 229
           D 
Sbjct: 58  DT 59

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (219), Expect = 2e-21
 Identities = 44/169 (26%), Positives = 91/169 (53%), Gaps = 4/169 (2%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GDS VGKTS +  +V +K+   YK T+G DF TK ++    G +   +Q+WD AGQ
Sbjct: 5   VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV--DGDKVATMQVWDTAGQ 62

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  +   +Y+ +D C++++D+TN  SFE++  W+ +      +++    P ++L +K 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 363 DLPDRQVEINE--IEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           D  + +  ++E   + +      +     S+K  + ++ +   +    +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.8 bits (112), Expect = 4e-07
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
           +LK++++GDS VGKTS +  +V +K+   YK T+G
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 36

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           ++I GDS VGKTS +  +V +K+   YK T+G DF TK ++    G +   +Q+WD 
Sbjct: 5   VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV--DGDKVATMQVWDT 59

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 3e-21
 Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 7/168 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K         R ++LQ+WD A
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---TMYLEDRTIRLQLWDTA 57

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+R+  +   Y ++S   ++++D+TN  SF+   +W  D+ ++     G+ +  +L+ +
Sbjct: 58  GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGN 113

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL D++    E      +   + +IE S+K    ++     +   +
Sbjct: 114 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           K++ +G+ +VGKTS +  F+ + F + Y+ T+
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 33

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           + ++  G+ +VGKTS +  F+ + F + Y+ T+G+DF +K         R ++LQ+WD 
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK---TMYLEDRTIRLQLWDT 56

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 3e-21
 Identities = 34/168 (20%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FV   F++ Y  T+   +  ++            L+I D A
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP----SVLEILDTA 59

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  M  +Y +N  G I+++ L N++SF+ +   +  +      +    +P +L+ +
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILVGN 116

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   +   +       +     ++E S+K   M+++    +V ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           K++V+G   VGK++    FV   F++ Y  T+   +  ++      
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
           Y +++ G   VGK++    FV   F++ Y  T+   +  ++      
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 7e-21
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 8/171 (4%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  Y +++ G   VGK++     +QN F+D Y  T+   +  +++   +       L I 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET----CLLDIL 56

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  M   Y +  +G + +F + N KSFE + Q++  +      D+   +P +L
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD---VPMVL 113

Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + +KCDL  R VE  + + +   Y  + +IE S+K    +ED+   LV  I
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           K++V+G   VGK++     +QN F+D Y  T+   +  +++   + 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET 50

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
             Y +++ G   VGK++     +QN F+D Y  T+   +  +++   + 
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET 50

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.9 bits (211), Expect = 2e-20
 Identities = 44/171 (25%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           + +  +++ G++ VGK+S V  FV N F +N + T+G  F T+           VK +IW
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ---RVTINEHTVKFEIW 57

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+R+  ++ +YY+N+   ++++D+T  +SF     W  +L  +   D    L    
Sbjct: 58  DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +    +  +R+V   E E +  +   + + E S+K    + D    + ++I
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
           T +K++++G++ VGK+S V  FV N F +N + T+G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW- 227
            S  +++ G++ VGK+S V  FV N F +N + T+G  F T+ ++  ++  +        
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 228 --DIYCTLSPIQIPTYPILITGDSTVGKT 254
                             L+  D T  ++
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQS 90

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 2e-20
 Identities = 42/172 (24%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           +I  + +++ G+S VGK+S V  FV+ +F +  ++T+G  F T+           VK +I
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ---TVCLDDTTVKFEI 59

Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
           WD AGQ+RY  ++ +YY+ +   I+++D+TN +SF     W  +            +   
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE----LQRQASPNIVIA 115

Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           L  +K DL +++    +        N + ++E S+K  + + +    +  ++
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 8e-06
 Identities = 13/33 (39%), Positives = 25/33 (75%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG 142
           K++++G+S VGK+S V  FV+ +F +  ++T+G
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 25/38 (65%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVG 204
           +   + +++ G+S VGK+S V  FV+ +F +  ++T+G
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 2e-19
 Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 21/191 (10%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           T   ++ GD  VGKT  +  +  NKF   Y  TV  +++         GG P  L ++D 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV----TVMIGGEPYTLGLFDT 58

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           AGQ+ Y  +  + Y  +D  ++ F + +  SFE+V +      +          P LL+ 
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT----PFLLVG 114

Query: 360 SKCDLPDRQVEIN-------------EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVD 406
           ++ DL D    I                E +      + ++E S+     +++  +  + 
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174

Query: 407 RIICSKRMEEE 417
             +     ++ 
Sbjct: 175 AALEPPEPKKS 185

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           +K +V+GD  VGKT  +  +  NKF   Y  TV  +++  ++   + 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP 50

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
            ++ GD  VGKT  +  +  NKF   Y  TV  +++  ++   + 
Sbjct: 6   CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP 50

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 2e-19
 Identities = 40/176 (22%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    F+Q+ F+ +Y  T+   ++           R  +L I D A
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTK----QCVIDDRAARLDILDTA 61

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+ +  M   Y +  +G +++F +T+R SFE + +++  +      D     P +L+ +
Sbjct: 62  GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD---EFPMILIGN 118

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEE 416
           K DL  ++    E      +   ++++E S+K  + ++ + + LV  I   ++ +E
Sbjct: 119 KADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI---RKFQE 171

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 143
           +++V+G   VGK++    F+Q+ F+ +Y  T+  
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGV 205
           Y +++ G   VGK++    F+Q+ F+ +Y  T+  
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 3e-19
 Identities = 36/169 (21%), Positives = 82/169 (48%), Gaps = 8/169 (4%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    +       L+I D A
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ----CMLEILDTA 59

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G +++  M  +Y +N  G  +++ +T + +F  +   +  +      ++   +P +L+ +
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED---VPMILVGN 116

Query: 361 KCD-LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCD   +R V   + + +  Q+   +++E S+K  + + +    LV +I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           K++V+G   VGK++    FVQ  F++ Y  T+   +  ++    + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ 50

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
           Y +++ G   VGK++    FVQ  F++ Y  T+   +  ++    + 
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ 50

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 3e-19
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 235 PIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKL 294
           P    T+ +++ G   VGK++    F+Q+ F+ +Y  T+   ++          G P +L
Sbjct: 1   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTK----ICSVDGIPARL 56

Query: 295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP 354
            I D AGQ+ +  M   Y +   G +++F + +R+SF  V +    +       +    P
Sbjct: 57  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFP 113

Query: 355 CLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM 414
            +L+ +K DL  ++       +     + +++ E S+K  L ++++   LV  +   K  
Sbjct: 114 VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR--KYQ 171

Query: 415 EE 416
           E+
Sbjct: 172 EQ 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 100 PRPSDAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKN 139
           P PS+     K++V+G   VGK++    F+Q+ F+ +Y  
Sbjct: 1   PPPSE---THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP 37

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 165 PIQTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKN 201
           P  + ++ +++ G   VGK++    F+Q+ F+ +Y  
Sbjct: 1   PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP 37

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 81.1 bits (199), Expect = 1e-18
 Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +  + +++ G   VGK++    F+ ++F+++Y+ T    +           G  V++ I 
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK----KVVLDGEEVQIDIL 57

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ Y  +   Y+++ +G + +F +T  +SF +   ++  +      +N   +P LL
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLL 114

Query: 358 LASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           + +K DL D++    E          ++++E S+K    ++     L+  I
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           K++++G   VGK++    F+ ++F+++Y+ T    +
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 8/39 (20%), Positives = 22/39 (56%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
             + +++ G   VGK++    F+ ++F+++Y+ T    +
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.9 bits (193), Expect = 6e-18
 Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 10/173 (5%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           +PTY +++ GD  VGK++    F Q  F+ +Y  T+   +      H +   +   L + 
Sbjct: 2   LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK----HTEIDNQWAILDVL 57

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
           D AGQ+ +  M   Y +  DG +I++ +T++ SFE V ++   +       +    P +L
Sbjct: 58  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMIL 114

Query: 358 LASKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRI 408
           +A+K DL   R+V  ++ + +  +YN + +IE S+K+  L ++ + + LV  I
Sbjct: 115 VANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           K++V+GD  VGK++    F Q  F+ +Y  T+   +
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY 41

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
           P+Y +++ GD  VGK++    F Q  F+ +Y  T+   +
Sbjct: 3   PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY 41

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 7e-18
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            ++ GD  VGKT  +  +  N F   Y  TV  ++S     +    G+PV L +WD AGQ
Sbjct: 8   CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAGQ 63

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + Y  +  + Y  +D  +I F L +  SFE+V    +      +  +    P +L+ +K 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE----VRHHCPNTPIILVGTKL 119

Query: 363 DLPDRQVEINEI-------------EAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL D +  I ++              A+  +   + ++E S+     ++   +  +  ++
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 410 C 410
           C
Sbjct: 180 C 180

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS 146
           +K +V+GD  VGKT  +  +  N F   Y  TV  ++S
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 43

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
            ++ GD  VGKT  +  +  N F   Y  TV  ++S     +    G+PV L +WD   
Sbjct: 8   CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA----NVMVDGKPVNLGLWDTAG 62

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 2e-17
 Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 21/180 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
            ++ GD  VGKT  +  +  + F + Y  TV  D           GG+   L ++D AGQ
Sbjct: 12  CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAV---SVTVGGKQYLLGLYDTAGQ 67

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + Y  +  + Y  +D  +I F + N  SF++V +       +   +    +P LL+ ++ 
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN----VPFLLIGTQI 123

Query: 363 DLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL D             + + + + + +  +     ++E S+     ++   +  +  I+
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
           LK +V+GD  VGKT  +  +  + F + Y  TV  D     ++            +  Q
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 67

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
            ++ GD  VGKT  +  +  + F + Y  TV  D     ++    
Sbjct: 12  CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGK 55

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.2 bits (186), Expect = 6e-17
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + GD+ VGK+S +  FV++ F  N   T+G  F TK     +Y     K  IWD AG 
Sbjct: 7   VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK---TVQYQNELHKFLIWDTAGL 63

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +R+  ++ +YY+ S   II++D+T  ++F ++  W  +            +   +  +KC
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE----LRQHGPPSIVVAIAGNKC 119

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DL D +  +              ++E S+K  + I +    +  RI
Sbjct: 120 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           LK+ ++GD+ VGK+S +  FV++ F  N   T+G  F
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF 41

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY---------GGRPVK 223
           + + GD+ VGK+S +  FV++ F  N   T+G  F TK + ++            G    
Sbjct: 7   VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66

Query: 224 LQIWDIYCTLSPIQIPTYPI 243
             +  +Y   S   I  Y I
Sbjct: 67  RALAPMYYRGSAAAIIVYDI 86

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 7e-17
 Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 8/166 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +                  +    + +   +WD+ GQ
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--------VETVEYKNISFTVWDVGGQ 54

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R Y+QN+ G I + D  +R+      +    + ++  L +  +L         
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           +  +     +++     ++         +     + + +++L +++
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNT 140
           ++IL++G    GKT+ +      + +      
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 32

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNT----VGVDFSTKLLSHKKYGGRPVKLQIWD 228
           IL+ G    GKT+ +      + +            V++     +    GG+     +W 
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62

Query: 229 IYCTLSPIQIPTYPI 243
            Y   +   I     
Sbjct: 63  HYFQNTQGLIFVVDS 77

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 75.8 bits (185), Expect = 1e-16
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 14/171 (8%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             ILI G    GKT+ +      +     K T+G +  T          + +KL +WD+ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET-------LSYKNLKLNVWDLG 69

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ       R YY ++   I + D T++    +  +  H +  +  L + A+L     A+
Sbjct: 70  GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF---AN 126

Query: 361 KCDLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K D P         + +          S +  S+ +   I + +++L+D I
Sbjct: 127 KQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK 148
           L+IL++G    GKT+ +      +     K T+G +  T 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL 56

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
           ILI G    GKT+ +      +     K T+G +  T          + +KL +WD+  
Sbjct: 20  ILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET-------LSYKNLKLNVWDLGG 70

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 1e-16
 Identities = 44/167 (26%), Positives = 88/167 (52%), Gaps = 8/167 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +++ G+  VGK+S +Q + +  F  +YK T+GVDF  +     +     V+L +WD AGQ
Sbjct: 5   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER---QIQVNDEDVRLMLWDTAGQ 61

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + +  +++ YY+ +  C+++F  T+R+SFE++  W+  + ++        +P  L+ +K 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKI 116

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL D     NE      +   + +   S KE L + +   +L ++ +
Sbjct: 117 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKN 139
           +K++V+G+  VGK+S +Q + +  F  +YK 
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK 33

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 229
           +++ G+  VGK+S +Q + +  F  +YK T+GVDF  +     +     V+L +WD 
Sbjct: 5   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER---QIQVNDEDVRLMLWDT 58

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 2e-16
 Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 22/181 (12%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I++ GDS  GKT+ +  F ++ F +NY  TV  +++       +   + ++L +WD +G 
Sbjct: 5   IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA----SFEIDTQRIELSLWDTSGS 60

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
             Y  +  + Y +SD  +I FD++  ++ +SV++       +           LL+  K 
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF----CPNTKMLLVGCKS 116

Query: 363 DLPD-------------RQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRI 408
           DL                 V  ++   +  Q    ++IE S+ +    + D  +      
Sbjct: 117 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

Query: 409 I 409
           +
Sbjct: 177 V 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
            KI+V+GDS  GKT+ +  F ++ F +NY  TV  ++
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
           I++ GDS  GKT+ +  F ++ F +NY  TV  ++
Sbjct: 5   IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (181), Expect = 2e-16
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + I++ GDS VGKT     F   +F D  + T+GVDF  +        G  +K+Q+WD A
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER---AVDIDGERIKIQLWDTA 59

Query: 301 GQDRYICMSRV-YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA 359
           GQ+R+       YY+N    + ++D+TN  SF S+  W  +     + ++   +P +L+ 
Sbjct: 60  GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVG 116

Query: 360 SKCDL-PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE 398
           +KCDL    QV  +  +     ++ M   E S+K     +
Sbjct: 117 NKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDND 155

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 8e-08
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           + KI+VIGDS VGKT     F   +F D  + T+GVDF  
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE 41

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 9e-06
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
           + I++ GDS VGKT     F   +F D  + T+GVDF  +        G  +K+Q+WD  
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER---AVDIDGERIKIQLWDTA 59

Query: 231 C 231
            
Sbjct: 60  G 60

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 3e-16
 Identities = 32/180 (17%), Positives = 73/180 (40%), Gaps = 21/180 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ++I GD   GKT  +    +++F + Y  TV  ++        +  G+ V+L +WD AG 
Sbjct: 5   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA----DIEVDGKQVELALWDTAGL 60

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           + Y  +  + Y ++D  ++ F + +  S E++ +         +      +P +L+ +K 
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE----VKHFCPNVPIILVGNKK 116

Query: 363 DLPDRQVEIN-------------EIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRII 409
           DL + +                 E   + ++     ++E S+K    + +         +
Sbjct: 117 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
            K++++GD   GKT  +    +++F + Y  TV  ++
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY 39

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 207
           ++I GD   GKT  +    +++F + Y  TV  ++
Sbjct: 5   LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY 39

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 72.8 bits (177), Expect = 9e-16
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GKT+ +      KF     +T+           K    R  KL IWD+ GQ
Sbjct: 5   LLMLGLDNAGKTTIL-----KKFNGEDVDTISPTLGFN---IKTLEHRGFKLNIWDVGGQ 56

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R Y++++DG I + D  +R+  +   +    L  +  L        L+ A+K 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQ 113

Query: 363 DLPDRQVE---INEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DLP           +E    + +       S+     +   +++L+D I
Sbjct: 114 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF 145
           L++L++G    GKT+ +      KF     +T+    
Sbjct: 3   LRLLMLGLDNAGKTTIL-----KKFNGEDVDTISPTL 34

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 1e-15
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 12/181 (6%)

Query: 238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIW 297
           IP   + + GD+  GK+S +  F+   +    K                  G+   + I 
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE-----MLVDGQTHLVLIR 57

Query: 298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLL 357
                +        +   +D  I +F L +  SF++V +    L S      G +   L+
Sbjct: 58  -----EEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 112

Query: 358 LAS--KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
                      R V      A+C      S+ E  +   L ++     +  +++  ++ +
Sbjct: 113 GTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

Query: 416 E 416
           +
Sbjct: 173 Q 173

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           L++ V+GD+  GK+S +  F+   +    K          L+  + +
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH 52

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 217
           P   + + GD+  GK+S +  F+   +    K          L+  + +
Sbjct: 4   PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH 52

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 2e-15
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y + + G   VGK+S V  FV+  F ++Y  TV   +                LQI D  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ----VISCDKSICTLQITDTT 58

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G  ++  M R+        I+++ +T+R+S E +      +       +   +P +L+ +
Sbjct: 59  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGN 116

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           KCD    +   +       +    +++E S+K +  +++    L++  
Sbjct: 117 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           ++ V G   VGK+S V  FV+  F ++Y  TV
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTV 203
           Y + + G   VGK+S V  FV+  F ++Y  TV
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV 35

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 4e-15
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + +++ GD   GKT++V+  +  +F   Y  T+GV+              P+K  +WD A
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL---VFHTNRGPIKFNVWDTA 60

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+++  +   YY  +   IIMFD+T+R ++++V  W  DL   C       +P +L  +
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGN 115

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRME 415
           K D+ DR+V+   I    H+   + + ++S+K +   E    +L  ++I    +E
Sbjct: 116 KVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           K++++GD   GKT++V+  +  +F   Y  T+GV+   
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 42

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIY 230
           + +++ GD   GKT++V+  +  +F   Y  T+GV+    +    +   +          
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 231 C 231
            
Sbjct: 64  K 64

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 4e-15
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 13/169 (7%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + + G    GKT++V      +F ++   TVG +        +K     V +++WDI GQ
Sbjct: 5   LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN-------MRKITKGNVTIKLWDIGGQ 57

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            R+  M   Y +     + M D  +++  E+     H+L  K  L      P L+L +K 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI---PVLVLGNKR 114

Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DLP    E   IE +         +    +S KE   I+ ++ +L+   
Sbjct: 115 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           +++ ++G    GKT++V      +F ++   TVG +       +   
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTI 49

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
           + + G    GKT++V      +F ++   TVG +       +       +  Q      
Sbjct: 5   LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSM 63

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 6e-15
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ +      + +                + +    + VK  +WD+ GQ
Sbjct: 15  ILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--------FNVETVTYKNVKFNVWDVGGQ 66

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           D+   + R YY  + G I + D  +R   +   Q  H + +   + +  +L     A+K 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF---ANKQ 123

Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DLPD        E +                +     + + + +L    
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNT 140
           ++IL++G    GKT+ +      + +      
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 70.0 bits (170), Expect = 9e-15
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GKT+ ++         +   T G +        K    +  KL +WDI GQ
Sbjct: 19  ILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI-------KSVQSQGFKLNVWDIGGQ 70

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            +     R Y++N+D  I + D  +RK FE   Q   +L  +  L     +P L+ A+K 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC---VPVLIFANKQ 127

Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           DL          E +               S+     ++D MN++   +
Sbjct: 128 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 2e-14
 Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           + I G + VGK++ V  F+  +F+  Y  T+   +              V ++I D AGQ
Sbjct: 5   LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH----QATIDDEVVSMEILDTAGQ 60

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
           +  I     + +  +G ++++D+T+R SFE V+  K+ LD      N  ++      +K 
Sbjct: 61  EDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV---GNKA 116

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKE-HLMIEDSMNFLVDRIICSKRM 414
           DL   +    E           ++ E S+      I +    L  R +  +RM
Sbjct: 117 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC-REVRRRRM 168

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           +K+ + G + VGK++ V  F+  +F+  Y  T+
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL 35

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
           + I G + VGK++ V  F+  +F+  Y  T+   +              V ++I D    
Sbjct: 5   LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH----QATIDDEVVSMEILDTAGQ 60

Query: 233 LSPIQIPTY 241
              IQ   +
Sbjct: 61  EDTIQREGH 69

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 7e-13
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 237 QIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQI 296
           Q  +  I I G  +VGK+S    FV+ +F+D+Y  T+   F+  +       G+   LQ+
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI----TVNGQEYHLQL 56

Query: 297 WDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL 356
            D AGQD Y    + Y  + +G I+++ +T+ KSFE +      L            P +
Sbjct: 57  VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI---PIM 113

Query: 357 LLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           L+ +K DL   +V   E      +    +++E S+KE+    D    ++   
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 154
            KI ++G  +VGK+S    FV+ +F+D+Y  T+   F+  +  + +
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ 50

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 167 QTPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK 216
           Q+ S  I I G  +VGK+S    FV+ +F+D+Y  T+   F+  +  + +
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ 50

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 14/171 (8%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           + ++I G    GKT+ +  F  N+ +            T   + ++      +  +WDI 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTS--------PTIGSNVEEIVINNTRFLMWDIG 67

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           GQ+        YY N++  I++ D T+R+      +  + + +   L        L+ A+
Sbjct: 68  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR---KAGLLIFAN 124

Query: 361 KCDLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K D+ +        + +       +        +     +   + +++ R+
Sbjct: 125 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
            K++++G    GKT+ +  F  N+ +   
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTS 44

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (153), Expect = 1e-12
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 21/173 (12%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L  G    GKT+ +     ++       T+   +       ++     +K   +D+ G 
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPT---SEELAIGNIKFTTFDLGGH 54

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            +   + + Y+   +G + + D  + + F+        L +   L +    P ++L +K 
Sbjct: 55  IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV---PFVILGNKI 111

Query: 363 DLPDRQVEINEIEAV----------CHQYNFMSWIEVSSKEHLMIEDSMNFLV 405
           D P+   E     A+                +     S        ++  +L 
Sbjct: 112 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 5/58 (8%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
           K+L +G    GKT+ +     ++       T+   +            +         
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGH 54

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (152), Expect = 4e-12
 Identities = 15/158 (9%), Positives = 44/158 (27%), Gaps = 6/158 (3%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L  G    GKT      +  ++ D    ++    +   +++ +     +   I     +
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTL---IDLPGHE 58

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                +   +  ++   + + D    +     V           +        L+  +K 
Sbjct: 59  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 118

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS 400
           D+         I+    +    +     S     ++ S
Sbjct: 119 DIAMA-KSAKLIQQQL-EKELNTLRVTRSAAPSTLDSS 154

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
            +L +G    GKT      +  ++ D    ++    +   +++ + 
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRG 46

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
           +L  G    GKT      +  ++ D    ++    +   +++ +     +         
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (150), Expect = 7e-12
 Identities = 18/160 (11%), Positives = 54/160 (33%), Gaps = 17/160 (10%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           IL+ G    GK+++++     + +     T G+           +  + V  ++ D+ GQ
Sbjct: 5   ILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE-------YDFEIKNVPFKMVDVGGQ 54

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHD-------LDSKCILDNGAMLPC 355
                     + +    + +   +         +  +         ++       + +  
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 356 LLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHL 395
           +L  +K DL + +V++  I+    ++          ++ L
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 154

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (104), Expect = 7e-06
 Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 11/169 (6%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ 167
           ++KIL++G    GK+++++     + +     T G+      + +  +     G     +
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGG---QR 55

Query: 168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH--KKYGGRPVKLQ 225
           +         DS       V     ++ L   + T  +  S  +            V + 
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 226 IWDIYCTLSPIQIPTYPILITGDSTVGKTSYVQG---FVQNKFLDNYKN 271
           ++     L   ++    I        G    ++    F+   F    ++
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 14/169 (8%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           ILI G    GKT+ +      + +                  +    + +K Q+WD+ G 
Sbjct: 8   ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--------VETVTYKNLKFQVWDLGGL 59

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                  R YY N+D  I + D  +R                   +       ++ A+K 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVA---MLEEEELRKAILVVFANKQ 116

Query: 363 DLPDRQVEINEIEAVCHQY---NFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           D+           ++             + S+ +   ++++M +LV+ +
Sbjct: 117 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
           ++IL++G    GKT+ +      + +   
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTI 34

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 28/184 (15%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
             ++  G    GKT+ +     ++   +              + ++     +    +D+ 
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP--------TSEELTIAGMTFTTFDLG 65

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
           G  +   + + Y    +G + + D  + +      +    L +   + N   +P L+L +
Sbjct: 66  GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN---VPILILGN 122

Query: 361 KCDLPDRQVEINEIEAVCHQYNF----------------MSWIEVSSKEHLMIEDSMNFL 404
           K D P   +    +  +   Y                  +     S  +     +   ++
Sbjct: 123 KIDRP-EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181

Query: 405 VDRI 408
              I
Sbjct: 182 AQYI 185

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNY 137
            K++ +G    GKT+ +     ++   + 
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 6e-11
 Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GK+++++         +   T G+      L    +       ++ D+ GQ
Sbjct: 5   LLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIF-------RMVDVGGQ 55

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKS-----------FESVVQWKHDLDSKCILDNGA 351
                     ++N    + +  L+                ES   ++  +      +   
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--- 112

Query: 352 MLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
               L L  K  L ++ +  + ++            + + +  L +   +N   D+II S
Sbjct: 113 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYS 172

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKY 155
           LK+L++G    GK+++++         +   T G+      L    +
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIF 47

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYC 231
           +L+ G    GK+++++         +   T G+      L    +    V  Q  +   
Sbjct: 5   LLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRK 61

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.5 bits (138), Expect = 4e-10
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI 299
           T+ +L+ G    GK++ V+             T G+  +       K     V   ++D+
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK--FQVDK-----VNFHMFDV 54

Query: 300 AGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLD-----SKCILDNGAM-- 352
            GQ          + +    I +   ++           + L       K I +N  +  
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 353 LPCLLLASKCDLPDRQVEINEI 374
           +  +L  +K DL   +V   + 
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKS 136

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           ++L++G    GK++ V+             T G+  + 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK 41

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 19/168 (11%), Positives = 51/168 (30%), Gaps = 4/168 (2%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +++ G+  VGK++    F       +    V  + + +        G    + + D+ 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMVDGESATIILLDMW 61

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
                      +        ++      ++     +                +P +L+ +
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASF--EKASELRIQLRRARQTEDIPIILVGN 119

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           K DL   +         C       +IE S+     +++    +V ++
Sbjct: 120 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV 141
           T  ++++IG+  VGK++    F       +    V
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 36

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 10/177 (5%)

Query: 241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA 300
           Y +L+ G   VGK++  + F   +     +        + ++  ++       L ++DI 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEA-----SLMVYDIW 56

Query: 301 GQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLAS 360
            QD    +        D  +I++ +T++ SFE   + +  L      D+  ++     + 
Sbjct: 57  EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 116

Query: 361 KCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEE 417
                 R+V ++E  A    ++   +IE S+  H  ++     +V +I    R + +
Sbjct: 117 LVR--SREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIR--LRRDSK 168

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST 147
           V K+L++G   VGK++  + F   +     +        +
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS 40

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 20/177 (11%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +L+ G    GK++ V      +    ++   G+           +  + +  +++D+ GQ
Sbjct: 5   LLLLGAGESGKSTIV-----KQMKIIHEAGTGIVE-------THFTFKDLHFKMFDVGGQ 52

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCIL-------DNGAMLPC 355
                     ++     I    L++     +  +  + +     L               
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 356 LLLA-SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICS 411
           +L    K    ++  +              ++ E ++      ED       + I +
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYT 169

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPY 160
           +K+L++G    GK++ V+                  F          GG+  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRS 54

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 10/71 (14%), Positives = 19/71 (26%)

Query: 173 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCT 232
           +L+ G    GK++ V+                  F          GG+  + + W     
Sbjct: 5   LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE 64

Query: 233 LSPIQIPTYPI 243
                I    +
Sbjct: 65  GVTAIIFCVAL 75

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 10/202 (4%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I+I G    GKTS +     +      + TV          +   G   V          
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                +            ++    + K   +  ++  D+ S         +  L+  +K 
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMI----EDSMNFLVDRIICSKRMEEEA 418
           +L   +      +A+  +   +      S   +      ED     +D +  +   +   
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFAN 181

Query: 419 VERKSSIRLSEETLRDDQPKKL 440
           +E    +   E ++   +  + 
Sbjct: 182 LEAS--VVAFEGSINKRKISQW 201

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 4/169 (2%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           I + G S VGK+S++   +  K L    +  G    T            V +  +  A  
Sbjct: 26  IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ-TLNFYIINDELHFVDVPGYGFAKV 84

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
            +    +      +            +  +      +D            +P +++A+K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 363 DL---PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRI 408
           D             +    +       I  SS+     +++   +   I
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 11/180 (6%)

Query: 243 ILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ 302
           +LI G   VGK++       NK +   K  V  +        +       K         
Sbjct: 3   VLIVGRPNVGKSTLF-----NKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCG 57

Query: 303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKC 362
                   +  +  +  + M    +   F    +     + + + D         +    
Sbjct: 58  VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVAN 117

Query: 363 DLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRMEEEAVERK 422
              + +    E++   +   F   I VS++ ++ ++     +++ II  K++EE+ ++ +
Sbjct: 118 KAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDT----MLETII--KKLEEKGLDLE 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	452
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.96
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.96
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.94
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.88
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.85
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.82
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.81
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.81
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.81
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.78
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.75
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.7
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.7
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.69
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.65
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.64
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.6
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.51
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.5
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.5
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.35
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.28
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.28
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.25
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.15
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.14
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.04
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.02
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.81
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.7
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.58
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.55
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.54
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.54
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.51
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.49
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.49
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.48
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.46
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.46
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.46
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.45
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.42
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.41
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.39
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.38
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.34
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.33
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.31
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.3
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.22
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.21
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.19
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.19
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.19
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.16
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.16
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.16
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.15
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.15
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.11
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.05
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.03
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.03
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.99
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.9
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.87
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.84
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.83
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.82
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.76
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.7
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.68
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.66
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.66
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.55
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.53
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.49
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.46
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.22
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.21
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.85
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.48
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.29
d1okkd2	207	GTPase domain of the signal recognition particle r	96.27
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.16
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.16
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.14
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.13
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.1
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.68
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.43
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.42
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.34
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.19
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.18
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.08
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.33
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.12
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.0
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	93.93
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	93.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	93.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.81
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	93.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.66
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.64
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.57
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.56
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.56
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.39
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.15
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.12
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.08
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.02
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.83
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.73
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.51
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.47
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	92.41
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.35
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	92.21
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.06
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.04
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	91.91
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	91.86
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	91.79
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	91.78
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.67
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	91.42
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	91.32
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	91.3
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	91.29
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	91.22
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.16
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	90.94
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.78
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	90.75
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	90.65
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	90.54
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	90.16
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.07
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	89.98
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	89.83
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	89.77
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	89.67
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	89.55
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.48
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	89.45
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.42
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.36
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	89.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	89.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	89.1
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	88.93
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	88.82
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	88.72
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.54
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	88.2
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	88.17
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	88.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	88.03
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	87.99
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	87.94
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	87.83
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.72
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	87.41
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	87.4
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	87.36
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	87.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	87.18
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	87.01
d2awna2	232	Maltose transport protein MalK, N-terminal domain	87.01
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	86.99
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	86.98
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.84
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	86.28
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	86.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	86.16
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	86.11
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	86.08
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	86.05
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	85.95
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	85.85
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	85.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	85.69
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	85.65
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	85.58
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	85.49
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	85.45
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.45
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	85.21
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	85.05
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	84.9
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	84.82
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	84.59
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	84.22
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	84.13
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	84.07
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	83.96
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	83.93
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	83.86
d1g2912	240	Maltose transport protein MalK, N-terminal domain	83.77
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	83.77
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	83.55
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	83.51
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	83.35
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	83.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	83.22
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	83.17
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	83.15
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	83.05
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	83.02
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	83.01
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	83.01
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	82.92
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	82.71
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	82.66
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	82.52
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	82.42
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	82.42
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	82.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	82.39
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	82.34
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	82.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	81.99
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	81.89
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	81.81
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	81.72
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	81.63
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	81.6
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	81.45
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	81.42
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	81.14
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	81.08
d1vmaa2	213	GTPase domain of the signal recognition particle r	80.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	80.93
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	80.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	80.83
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	80.81
d1okkd2	207	GTPase domain of the signal recognition particle r	80.76
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	80.75
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.7
d2qy9a2	211	GTPase domain of the signal recognition particle r	80.53
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	80.36
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	80.33
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	80.23
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	80.09

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-30  Score=231.24  Aligned_cols=165  Identities=31%  Similarity=0.559  Sum_probs=153.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||+++|+++.+...+.++++.++....+.+   ++..+.+.+|||+|++.|..++..+++++|++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI---NGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEE---CCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            489999999999999999999999999999999999999998888   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..+|+.+..|+..+.+.    .....|++||+||+|+.+ +++..++++.+++..++. |++|||++|.||+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~-~~~~SAktg~gV~  156 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQY----ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKESDNVE  156 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECCTTTCTTHH
T ss_pred             EEeeecccchhhhhhhhhhhhhccc----ccccccEEEEEeecccccccchhhhHHHHHHHhCCCE-EEEEccCCCCCHH
Confidence            9999999999999999998888766    456799999999999877 778889999999999987 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|.++++.++...
T Consensus       157 e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         157 KLFLDLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998887654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=231.73  Aligned_cols=162  Identities=27%  Similarity=0.632  Sum_probs=150.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++.+...+.+|++.+........   ++..+.+.+|||+|++++..++..+++++|++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   78 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV---NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE---TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeee---cCceeeeeeeccCCccchhhhhhhhhccCceE
Confidence            379999999999999999999999999999999999888888877   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||+++..||+++..|+..+.+..     .++|++||+||+|+.+ +++..++++++++++++. |++|||++|.||+
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~~v~  152 (164)
T d1z2aa1          79 VLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVS  152 (164)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECBTTTTBSSH
T ss_pred             EEEEeccchhhhhhcccccccccccC-----CCceEEEeeccCCcccceeeeehhhHHHHHHcCCE-EEEeccCCCcCHH
Confidence            99999999999999999999987762     5699999999999987 788899999999999985 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|++|++.+++
T Consensus       153 e~f~~l~~~~lq  164 (164)
T d1z2aa1         153 EVFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=229.84  Aligned_cols=168  Identities=27%  Similarity=0.445  Sum_probs=150.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|++|||||||+++|+++.+...+.++.+ +.....+.+   ++..+.+.+||++|+++|..++..+++++|
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~---~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSV---DGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEE---TTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEecc---CCeeeeeeccccccccccccccchhhccce
Confidence            4568999999999999999999999999888877754 566677777   899999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++|+|||+++..||+.+..|+..+.+..   ...+.|++||+||+|+.+ +.+..+++..+++++++. |++|||++|.|
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~g  155 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEASAKLRLN  155 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBS
T ss_pred             eeeeecccccccccchhhhhhHHHHHHh---ccCCCceEEEEEeechhhccccchhhhhHHHHhcCCE-EEEEeCCCCcC
Confidence            9999999999999999999998876542   346789999999999977 778889999999999986 99999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy14768        397 IEDSMNFLVDRIICSKR  413 (452)
Q Consensus       397 v~~lf~~i~~~i~~~~~  413 (452)
                      |+++|+.+++.+.+.+.
T Consensus       156 v~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         156 VDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999876543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=6.3e-30  Score=227.99  Aligned_cols=163  Identities=34%  Similarity=0.664  Sum_probs=150.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++.+...+.++.+.+.....+..   ....+.+.+|||+|+++|..++..+++++|++
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR---NDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEe---ecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            489999999999999999999999999999999998888888877   88889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.++..+..|+..+...    .....|++||+||+|+.+ +.+..+++++++++.++. |++|||++|.||+
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gv~  156 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASAKDNINVK  156 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcc----cCCcceEEEEEeecccccccccchhhhHHHHHHcCCE-EEEecCCCCcCHH
Confidence            9999999999999999888877666    567799999999999887 778889999999999986 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|++|++.+.+
T Consensus       157 e~f~~l~~~i~e  168 (169)
T d3raba_         157 QTFERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-30  Score=227.55  Aligned_cols=163  Identities=30%  Similarity=0.455  Sum_probs=148.0

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+   ++..+.+.+|||+|++.|..++..+++.+|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~   78 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV---NGQEYHLQLVDTAGQDEYSIFPQTYSIDING   78 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEE---TTEEEEEEEEECCCCCTTCCCCGGGTSSCCE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEec---CcEEEEeeecccccccccccccchhhhhhhh
Confidence            357999999999999999999999999999999999876 455666   8999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.||+.+..|+..+.+..   ...++|++||+||+|+.. +++..++++++++++++. |++|||++|.||
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~Sak~~~~v  154 (167)
T d1xtqa1          79 YILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESSAKENQTA  154 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH---CSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECCTTCHHHH
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhhcc---cccccceeeeccccccccccchhHHHHHHHHHHcCCE-EEEEecCCCCCH
Confidence            999999999999999999998887653   456799999999999976 788999999999999986 999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRII  409 (452)
Q Consensus       398 ~~lf~~i~~~i~  409 (452)
                      +++|+.+++.+.
T Consensus       155 ~~~f~~li~~~~  166 (167)
T d1xtqa1         155 VDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998775

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-30  Score=227.95  Aligned_cols=163  Identities=22%  Similarity=0.317  Sum_probs=130.6

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++|.+..+.. +.++.+ +.....+.+   ++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~---~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~i   76 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVV---DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV   76 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEE---TTEEEEEEEEECC-------CHHHHHTSCSEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee-eeecceeec---cccccceeeeecccccccceecccchhhhhhhc
Confidence            689999999999999999999866533 334444 444556666   899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.||+.+..|+..+....   ....+|++||+||+|+.+ +++..+++++++..+++. |++|||++|.||++
T Consensus        77 lv~d~t~~~s~~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~~~~v~~  152 (168)
T d2gjsa1          77 IVYSVTDKGSFEKASELRVQLRRAR---QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETSAALHHNVQA  152 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC---C--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSE-EEECBTTTTBSHHH
T ss_pred             eeccccccccccccccccchhhccc---ccccceEEEeecccchhhhcchhHHHHHHHHHhcCCE-EEEEeCCCCcCHHH
Confidence            9999999999999999999887652   346689999999999987 788899999999999986 99999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy14768        400 SMNFLVDRIICSK  412 (452)
Q Consensus       400 lf~~i~~~i~~~~  412 (452)
                      +|+++++.+..++
T Consensus       153 ~f~~l~~~i~~~~  165 (168)
T d2gjsa1         153 LFEGVVRQIRLRR  165 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-30  Score=229.44  Aligned_cols=163  Identities=34%  Similarity=0.603  Sum_probs=144.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||+++|+++.+...+.+|.+.+.....+..   ++..+.+.+||++|++.+..++..+++++|++
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   79 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI---GGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   79 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES---SSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeecc---CCccceeeeeccCCcceecccchhhccCCcee
Confidence            479999999999999999999999999999999999998888888   88899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+.+..|+..+...    .....|++||+||+|+.+ +++..++++++++++++. |+||||++|.||+
T Consensus        80 i~v~d~~~~~Sf~~~~~~~~~~~~~----~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~-~~e~Sak~~~~v~  154 (167)
T d1z08a1          80 ILVYDITDEDSFQKVKNWVKELRKM----LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIE  154 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH----HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEBTTTTBSHH
T ss_pred             EEEEeCCchhHHHhhhhhhhhcccc----cccccceeeeccccccccccccchHHHHHHHHHcCCe-EEEEecCCCcCHH
Confidence            9999999999999999998877665    345689999999999987 788999999999999986 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        399 DSMNFLVDRIIC  410 (452)
Q Consensus       399 ~lf~~i~~~i~~  410 (452)
                      ++|++|++.+++
T Consensus       155 e~F~~l~~~i~~  166 (167)
T d1z08a1         155 ELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-29  Score=225.84  Aligned_cols=162  Identities=28%  Similarity=0.532  Sum_probs=150.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .++||+++|.+|||||||+++|.++.+...+.+|.+.++.......   +.....+.+|||+|++++..++..+++.+|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   79 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY---QNELHKFLIWDTAGLERFRALAPMYYRGSAA   79 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccc---cccccceeeeecCCchhhhHHHHHHHhhccc
Confidence            4689999999999999999999999999999999998888877777   8888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.+|+.+..|+..+...    .....|++||+||+|+.+ +.+..+++++++..+++. |++|||++|.||
T Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAk~~~nV  154 (167)
T d1z0ja1          80 AIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAINI  154 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECBTTTTBSH
T ss_pred             eEEEeeechhhhhhhHHHhhhhhhhc----cCCcceEEEecccchhccccchhHHHHHHHHHHcCCE-EEEEecCCCCCH
Confidence            99999999999999999999888776    567899999999999987 789999999999999986 999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRI  408 (452)
Q Consensus       398 ~~lf~~i~~~i  408 (452)
                      +++|.+|++.+
T Consensus       155 ~e~f~~l~~~i  165 (167)
T d1z0ja1         155 NELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.96  E-value=8.2e-30  Score=227.21  Aligned_cols=164  Identities=25%  Similarity=0.489  Sum_probs=145.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      +.+||+++|++|||||||+++|+.+.+...+.+|++.++. ..+.+   ++..+.+.+||++|++++..++..+++++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~---~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~   78 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVL---DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   78 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEE---TTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-ccccc---ccccccccccccccccchhhhhhhcccccce
Confidence            3579999999999999999999999999999999987664 45556   8999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..||+.+..|+..+.+..   ...++|++||+||+|+.+ +++..++++++++.+++. |++|||++|.||
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~gv  154 (168)
T d1u8za_          79 FLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETSAKTRANV  154 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECCTTTCTTH
T ss_pred             eEEEeeccchhhhhhHHHHHHHHHHhh---CCCCCcEEEEeccccccccccccHHHHHHHHHHcCCe-EEEEcCCCCcCH
Confidence            999999999999999999999887653   456799999999999977 788999999999999986 999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRIIC  410 (452)
Q Consensus       398 ~~lf~~i~~~i~~  410 (452)
                      +++|+++++.+..
T Consensus       155 ~e~f~~l~~~i~~  167 (168)
T d1u8za_         155 DKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-29  Score=225.62  Aligned_cols=164  Identities=28%  Similarity=0.484  Sum_probs=148.2

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      +++||+++|+++||||||+++++++.+...+.++.+..+ ...+..   ++..+.+.+||++|++.+..++..+++.+|+
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   78 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEI---DNQWAILDVLDTAGQEEFSAMREQYMRTGDG   78 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEE---TTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-cccccc---ccccccccccccccccccccchhhhhhhccE
Confidence            468999999999999999999999999988888887554 455666   8899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc-c
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL-M  396 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~-n  396 (452)
                      +++|||++++.||+.+..|+..+.+..   ...+.|+|||+||+|+.+ +.+..++++++++++++. |+||||+++. |
T Consensus        79 ~llv~d~~d~~Sf~~~~~~~~~i~~~~---~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e~Sak~~~~n  154 (169)
T d1x1ra1          79 FLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETSAKDPPLN  154 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEBCSSSCBS
T ss_pred             EEEecccccchhhhccchhhHHHHhhc---cccCccEEEEecccchhhhceeehhhHHHHHHHcCCE-EEEEcCCCCCcC
Confidence            999999999999999999999887663   346799999999999987 788999999999999986 9999999975 9


Q ss_pred             HHHHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRIIC  410 (452)
Q Consensus       397 v~~lf~~i~~~i~~  410 (452)
                      |+++|+.|++.+.+
T Consensus       155 V~~~F~~l~~~i~~  168 (169)
T d1x1ra1         155 VDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.2e-30  Score=225.45  Aligned_cols=160  Identities=31%  Similarity=0.624  Sum_probs=148.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++|.++++...+.++++.+........   ++..+.+.+||++|++.+..++..++..+|+++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   77 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAV   77 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEC---SSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeecc---CCCceeeeecccCCcchhccchHHHhhccceEE
Confidence            68999999999999999999999999999999998888777777   888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||+++..||+.+..|+..+...    ...+.|++||+||+|+.+ +.+..+++.++++.+++. |+||||++|.||++
T Consensus        78 lv~d~~~~~s~~~i~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~~v~e  152 (164)
T d1yzqa1          78 VVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQ  152 (164)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH----HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHHH
T ss_pred             EeeccccccchhhhHhhHHHHHHh----cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCE-EEEecCCCCcCHHH
Confidence            999999999999999999988876    456799999999999987 788889999999999987 99999999999999


Q ss_pred             HHHHHHHHH
Q psy14768        400 SMNFLVDRI  408 (452)
Q Consensus       400 lf~~i~~~i  408 (452)
                      +|++|++++
T Consensus       153 ~f~~i~~~l  161 (164)
T d1yzqa1         153 LFRRVAAAL  161 (164)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=226.73  Aligned_cols=163  Identities=20%  Similarity=0.310  Sum_probs=142.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ..||+++|+++||||||+++|.++.+...+.+|++. ........   ++..+.+.+||++|++.|..++..+++++|++
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   77 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEV---DGKQVELALWDTAGLEDYDRLRPLSYPDTDVI   77 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEE---TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccc---cccceeeeccccCccchhcccchhhcccchhh
Confidence            368999999999999999999999999888888874 44455556   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCEE
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMSW  386 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~~  386 (452)
                      |||||++++.||+.+..|+..+...    ...++|++||+||+|+.+             +.+..++++.++++++...|
T Consensus        78 ilv~d~~~~~Sf~~~~~~~~~~~~~----~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~  153 (177)
T d1kmqa_          78 LMCFSIDSPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY  153 (177)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHH----HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHH----hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEE
Confidence            9999999999999987754444333    246799999999999964             35778899999999998889


Q ss_pred             EEecCCCCccHHHHHHHHHHHHHH
Q psy14768        387 IEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       387 ~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +||||++|.||+++|+.+++.+++
T Consensus       154 ~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         154 MECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhC
Confidence            999999999999999999998863

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=224.64  Aligned_cols=161  Identities=29%  Similarity=0.624  Sum_probs=149.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.++||||||+++++++.+...+.++++.++....+..   ++..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV---SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE---TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEE---CCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            479999999999999999999999999999999999998888888   89999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||+++..||+.+..|+..+.+.    .....|++||+||+|+.+ ..+..++++.+++..++. |++|||++|.||+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Saktg~~v~  155 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVE  155 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhh----ccccceEEEEcccccchhhcccHHHHHHHHHHHcCCE-EEEEeCCCCCCHH
Confidence            9999999999999999999888776    567899999999999977 778888999999999875 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|++|++.+
T Consensus       156 e~f~~i~~~i  165 (166)
T d1z0fa1         156 DAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=229.25  Aligned_cols=163  Identities=23%  Similarity=0.424  Sum_probs=143.4

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|||||||+++|+.+.+...+.+|++ +.....+..   ++..+.+.+|||+|++.|..++..+++++|+
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~---~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTV---GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEES---SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEee---CCceEEeecccccccchhhhhhhhcccccce
Confidence            358999999999999999999999999999999887 455666666   7888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFM  384 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~  384 (452)
                      +|+|||++++.||+++.. |...++..     ..++|++||+||+|+.+             +.+..+++.+++++++..
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-----~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-----APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  158 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-----STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-----CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCC
Confidence            999999999999998865 55555444     46799999999999863             567889999999999977


Q ss_pred             EEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        385 SWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       385 ~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      .|+||||++|.||+++|+.+++++++
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHcC
Confidence            79999999999999999999998863

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.6e-30  Score=227.55  Aligned_cols=162  Identities=25%  Similarity=0.423  Sum_probs=143.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|.+|||||||+++|+++.+...+.+|++..+. .....   ++..+.+.+||++|++.|..++..+++.+|++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~---~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~   77 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISC---DKSICTLQITDTTGSHQFPAMQRLSISKGHAF   77 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEE---TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceee---ccccceeccccccccccccccccccccceeEE
Confidence            589999999999999999999999999899999886553 34455   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+....  ....++|++|||||+|+.+ +++..++++++++.+++. |+||||++|.||+
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~-~~e~Sak~~~~v~  154 (171)
T d2erxa1          78 ILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVK  154 (171)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHH--C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECBTTTTBSHH
T ss_pred             EEEeecccccchhcccchhhhhhhhh--ccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCe-EEEEcCCCCcCHH
Confidence            99999999999999999988876642  1246789999999999976 788999999999999986 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        399 DSMNFLVDRI  408 (452)
Q Consensus       399 ~lf~~i~~~i  408 (452)
                      ++|+.|++.+
T Consensus       155 e~f~~l~~~~  164 (171)
T d2erxa1         155 ELFQELLNLE  164 (171)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-29  Score=225.43  Aligned_cols=170  Identities=26%  Similarity=0.567  Sum_probs=137.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++|+++.+...+.++.+...........  +...+.+.+|||+|++++..++..+++.+|+++
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD--GDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS--SSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeec--CcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            789999999999999999999999998888888877766665541  456678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|||+++..||+.+..|+.++..........++|++||+||+|+.+  +.+..++++++++.++..+|++|||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999999987765444456899999999999986  45788899999999987779999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|++|++.+++++
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-29  Score=221.97  Aligned_cols=163  Identities=26%  Similarity=0.511  Sum_probs=146.8

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .++||+++|++|||||||+++|+++.+...+.++++ +.......+   ++..+.+.+||++|++.+..++..+++++|+
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~---~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~   77 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEV---DSSPSVLEILDTAGTEQFASMRDLYIKNGQG   77 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEE---TTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeec---CcceEeeccccCCCccccccchHHHhhcccc
Confidence            468999999999999999999999999988888887 455556666   8899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +++|||++++.+|.++..|+..+....   ...++|++|||||+|+.+ +.+..++++.+++.+++. |++|||++|.||
T Consensus        78 ~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~~i  153 (167)
T d1kaoa_          78 FILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETSAKSKTMV  153 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEECTTCHHHH
T ss_pred             eeeeeeecchhhhhhhhchhhhhhhhc---cCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCe-EEEECCCCCcCH
Confidence            999999999999999999998887652   346799999999999977 778889999999999987 999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRII  409 (452)
Q Consensus       398 ~~lf~~i~~~i~  409 (452)
                      +++|+.|++.+.
T Consensus       154 ~e~f~~i~~~i~  165 (167)
T d1kaoa_         154 DELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999998765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-29  Score=222.22  Aligned_cols=164  Identities=24%  Similarity=0.471  Sum_probs=146.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|++|||||||+++|+.+.+...+.++++.++ ...+..   ++..+.+.+||++|++.+..++..+++++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   77 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV---DCQQCMLEILDTAGTEQFTAMRDLYMKNGQG   77 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEES---SSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEe---eeeEEEeccccccCcccccccccccccccce
Confidence            358999999999999999999999999999999988665 444555   8889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||++++.||+.+..|+..+.+..   ...++|++||+||+|+.+ +.+..+++..+++++...+|++|||++|.||
T Consensus        78 ~ilv~d~~~~~sf~~~~~~~~~~~~~~---~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv  154 (167)
T d1c1ya_          78 FALVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV  154 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred             eEEeeeccchhhhHhHHHHHHHHHHhc---CCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCH
Confidence            999999999999999999998887652   346799999999999987 7788889999999876667999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRII  409 (452)
Q Consensus       398 ~~lf~~i~~~i~  409 (452)
                      +++|+++++.+.
T Consensus       155 ~e~F~~l~~~i~  166 (167)
T d1c1ya_         155 NEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-29  Score=222.51  Aligned_cols=164  Identities=25%  Similarity=0.365  Sum_probs=143.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|++|||||||+++|+++.|...+.+|++.++... +..   ++..+.+.+||++|++.+. .+..+++.+|++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~---~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~   76 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATI---DDEVVSMEILDTAGQEDTI-QREGHMRWGEGF   76 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEE---TTEEEEEEEEECCCCCCCH-HHHHHHHHCSEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccc---cccceEEEEeecccccccc-cchhhhcccccc
Confidence            58999999999999999999999999999999998877543 344   7889999999999998775 456789999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCc-cH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHL-MI  397 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~-nv  397 (452)
                      ++|||++++.||+.+..|...+....   ...+.|++||+||+|+.+ +.++.++++++++++++. |++|||++|. ||
T Consensus        77 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~Saktg~gnV  152 (168)
T d2atva1          77 VLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSACTGEGNI  152 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCTTTCTTCH
T ss_pred             eeecccCCccchhhhhhhcccccccc---cccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCe-EEEEccccCCcCH
Confidence            99999999999999998877665542   346799999999999977 788999999999999986 9999999998 69


Q ss_pred             HHHHHHHHHHHHHhh
Q psy14768        398 EDSMNFLVDRIICSK  412 (452)
Q Consensus       398 ~~lf~~i~~~i~~~~  412 (452)
                      +++|..+++.+.+++
T Consensus       153 ~e~F~~l~~~i~~~r  167 (168)
T d2atva1         153 TEIFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=224.51  Aligned_cols=168  Identities=33%  Similarity=0.620  Sum_probs=154.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+....+.+   ++..+.+.||||+|+++|..++..+++++|++
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~---~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL---DGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE---TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEE---eeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            489999999999999999999999999999999999888888888   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|...+.+.    ....+|++||+||.|+.+ ..+..++...++...+.. |+++||++|.||+
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~SAk~g~gi~  157 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRY----ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVE  157 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECCTTTCTTHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhc----ccCCceEEEEEeccccccccchhHHHHhhhhhccCcc-eEEEecCcCccHH
Confidence            9999999999999999988888776    567899999999999988 788889999999999887 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy14768        399 DSMNFLVDRIICSKRME  415 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~  415 (452)
                      ++|+++++.+.+.....
T Consensus       158 e~f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         158 DAFLTMARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999999887665443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.2e-29  Score=222.33  Aligned_cols=165  Identities=32%  Similarity=0.649  Sum_probs=122.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||+++|+++.+...+.++++.++....+.+   ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE---TTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEE---CCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            479999999999999999999999999899999999999888888   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+.+..|+..+...    ...+.|++||+||+|+.. +....+++..++...++. |++|||++|.||+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~gv~  157 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVE  157 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC---CCHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhh----ccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCE-EEEEeCCCCCCHH
Confidence            9999999999999999999888766    567899999999999987 677788889999998876 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|++|++.+..++
T Consensus       158 e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         158 NAFFTLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-30  Score=228.53  Aligned_cols=164  Identities=27%  Similarity=0.585  Sum_probs=141.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++.+...+.+|++.++....+..   ++..+.+.+|||+|++.+..++..+++++|++
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   79 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT---NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   79 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECB---TTCCEEEEEEECTTHHHHSSCGGGGTTTCCEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccc---ccccccccccccccccccceecchhcccccch
Confidence            479999999999999999999999999999999999998888877   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      ++|||++++.||+.+..|+..+.+..     .++|++||+||+|+.+... .++...++...++. |++|||++|.||++
T Consensus        80 ilv~d~~~~~Sf~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~-~~~~~~~~~~~~~~-~~e~Sak~~~~v~e  152 (170)
T d1i2ma_          80 IIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQ-YYDISAKSNYNFEK  152 (170)
T ss_dssp             EEEEETTSGGGGTTHHHHHHHHHHHH-----CSCCEEEEEECCCCSCSCC-TTTSHHHHSSCSSE-EEEEBTTTTBTTTH
T ss_pred             hhccccccccccchhHHHHHHHhhcc-----CCCceeeecchhhhhhhhh-hhHHHHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            99999999999999999999887762     5799999999999986332 23455677777765 99999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy14768        400 SMNFLVDRIICSKR  413 (452)
Q Consensus       400 lf~~i~~~i~~~~~  413 (452)
                      +|++|++.++....
T Consensus       153 ~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         153 PFLWLARKLIGDPN  166 (170)
T ss_dssp             HHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHccCCC
Confidence            99999999876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-29  Score=221.04  Aligned_cols=164  Identities=27%  Similarity=0.484  Sum_probs=143.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.++||||||+++|+++.+...+.+|.+ +.....+.+   ++..+.+.+||++|++.+..++..+++.+|++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVI---DDRAARLDILDTAGQEEFGAMREQYMRTGEGF   80 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEE---TTEEEEEEEEECC----CCHHHHHHHHHCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeee---cccccccccccccccccccccccccccccceE
Confidence            48999999999999999999999999988888877 555666667   89999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ++|||++++.||+.+..|+..+....   .....|+|||+||+|+.+ +.+..++++++++++++. |++|||++|.||+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~~~~i~  156 (171)
T d2erya1          81 LLVFSVTDRGSFEEIYKFQRQILRVK---DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVT-YMEASAKIRMNVD  156 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCE-EEECBTTTTBSHH
T ss_pred             EEeeccccccchhhHHHHhHHHHhhc---ccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCE-EEEEcCCCCcCHH
Confidence            99999999999999999988776542   446799999999999987 788999999999999986 9999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14768        399 DSMNFLVDRIICS  411 (452)
Q Consensus       399 ~lf~~i~~~i~~~  411 (452)
                      ++|+.|++.+.+.
T Consensus       157 e~f~~l~~~i~k~  169 (171)
T d2erya1         157 QAFHELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-29  Score=222.86  Aligned_cols=163  Identities=27%  Similarity=0.574  Sum_probs=150.9

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+.++....+..   ....+.+.+||++|++.|..++..+++++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~   81 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL---DDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeec---cceEEEEEeccCCCchhhhhhHHHHhhCcce
Confidence            3589999999999999999999999999999999999988888877   8889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMI  397 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv  397 (452)
                      +|+|||+++..+|+.+..|+..+.+.    ...+.|++||+||+|+.+ +.++.++++++++.+++. |++|||++|.||
T Consensus        82 ~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~-~~e~SAk~g~~V  156 (170)
T d1r2qa_          82 AIVVYDITNEESFARAKNWVKELQRQ----ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETSAKTSMNV  156 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTH
T ss_pred             EEEEeccchhhHHHHHHHHhhhhhhc----cCCCceEEeecccccccccccccHHHHHHHHHhcCCE-EEEeeCCCCCCH
Confidence            99999999999999999998888776    467899999999999987 788999999999999876 999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        398 EDSMNFLVDRII  409 (452)
Q Consensus       398 ~~lf~~i~~~i~  409 (452)
                      +++|++|++.+.
T Consensus       157 ~e~f~~l~~~i~  168 (170)
T d1r2qa_         157 NEIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.5e-29  Score=225.11  Aligned_cols=161  Identities=24%  Similarity=0.400  Sum_probs=141.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+.+.+...+.+|++.. .......   +++.+.+.+|||+|+++|..++..+++++|++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   78 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMI---GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF   78 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEE---TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEee---CCceeeeeccccccchhhhhhhhhccccccee
Confidence            5899999999999999999999999999999998844 4455555   78899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHH-HHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCE
Q psy14768        320 IIMFDLTNRKSFESVVQW-KHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMS  385 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~-~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~  385 (452)
                      |+|||++++.||+++..| ...+...     ..+.|+++|+||+|+.+             +.+..+++++++.+++...
T Consensus        79 ilv~d~~~~~Sf~~~~~~~~~~~~~~-----~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  153 (191)
T d2ngra_          79 LVCFSVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVK  153 (191)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSC
T ss_pred             ecccccchHHHHHHHHHHHHHHHhhc-----CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCe
Confidence            999999999999999764 4444443     46799999999999853             4588899999999988766


Q ss_pred             EEEecCCCCccHHHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~i~  409 (452)
                      |+||||++|.||+++|+.+++.++
T Consensus       154 ~~e~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         154 YVECSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHh
Confidence            999999999999999999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.5e-29  Score=222.21  Aligned_cols=164  Identities=28%  Similarity=0.584  Sum_probs=146.3

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++++++++...+.++.+.+........   .+..+.+.+||++|++.+..++..+++.+|++|
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI---DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE---TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeee---eeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            79999999999999999999999999888888888887777777   888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|||++++.||+.+..|+..+.+.    ...++|++||+||+|+.. +....+++..+++..++. |++|||++|.||++
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~----~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~-~~e~Sa~tg~~V~e  155 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEE  155 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECTTTCTTHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHh----CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCE-EEEecCCCCCCHHH
Confidence            999999999999999999888776    567899999999999876 778889999999999886 99999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy14768        400 SMNFLVDRIICSK  412 (452)
Q Consensus       400 lf~~i~~~i~~~~  412 (452)
                      +|.++++.+.+..
T Consensus       156 ~f~~i~~~i~~~~  168 (173)
T d2a5ja1         156 AFINTAKEIYRKI  168 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=219.82  Aligned_cols=168  Identities=30%  Similarity=0.590  Sum_probs=149.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      -+||+++|++|||||||+++|+.+.+...+.+|++.......+..   ++..+.+.+||++|+.++...+..++..+|++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV---DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE---TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeee---cCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            479999999999999999999999999999999998888888777   88899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      ++|||.++..||+.+..|+..+..........+.|++||+||+|+.++++..+++++++++.+..+|+||||++|.||++
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999999887765444556799999999999988888999999999998765699999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        400 SMNFLVDRIIC  410 (452)
Q Consensus       400 lf~~i~~~i~~  410 (452)
                      +|++|++.++.
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-29  Score=221.46  Aligned_cols=165  Identities=28%  Similarity=0.602  Sum_probs=151.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||+++|..+++...+.++.+.......+..   ++..+.+.+|||+|++++..++..+++.+|++
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV---GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE---TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEe---cCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            489999999999999999999999999999999998887777777   88899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.+|+.+..|+..+...    ...++|++||+||+|+.. .+...+++.+++...++. |++|||++|.||+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sak~~~gi~  156 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARML----ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVE  156 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEecccchhHHHHhhhhcccccc----cCCceEEEEEEecccccchhchhhhHHHHHHHhCCCE-EEEeeCCCCcCHH
Confidence            9999999999999999999988776    457899999999999876 778888999999998876 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|+++++.+.++.
T Consensus       157 e~f~~l~~~i~~~~  170 (174)
T d2bmea1         157 EAFVQCARKILNKI  170 (174)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=218.85  Aligned_cols=163  Identities=29%  Similarity=0.556  Sum_probs=147.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|++|||||||+++|+++.+...+.++++.++... +..   ++..+.+.+||++|++.+...+..+++.++++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~   78 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVI---DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   78 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEE---TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eee---eceeeeeeeeeccCccccccchhhhhhccccc
Confidence            58999999999999999999999999999899998766544 445   78889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      ++|||+++..+|+.+..|+..+.+..   ...++|++||+||+|+.++.+..++++++++.+++. |++|||++|.||++
T Consensus        79 iiv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          79 LCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP-YIETSAKTRQGVED  154 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH---TCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTTHHH
T ss_pred             ceeecccccccHHHHHHHHHHHHHhc---CCCCCeEEEEecccccccccccHHHHHHHHHHhCCe-EEEEcCCCCcCHHH
Confidence            99999999999999999999988763   345799999999999988888899999999999987 99999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14768        400 SMNFLVDRIIC  410 (452)
Q Consensus       400 lf~~i~~~i~~  410 (452)
                      +|.+|++.+.+
T Consensus       155 ~f~~i~~~i~~  165 (166)
T d1ctqa_         155 AFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2.1e-28  Score=220.94  Aligned_cols=173  Identities=32%  Similarity=0.601  Sum_probs=154.7

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++|+++.+...+.+|++.+........   .+..+.+.+|||+|++.+..++..++..+|++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV---DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   79 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES---SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeee---CCceEEEEeeecCCcccccccccccccCccEEE
Confidence            68999999999999999999999999999999999998888887   888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|||.++..+|+.+..|+..+..........++|++||+||+|+.++.+..++..+++...+..+|++|||++|.||+++
T Consensus        80 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          80 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             EeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            99999999999999999988876643333456899999999999887788888888988776666999999999999999


Q ss_pred             HHHHHHHHHHhhhhhH
Q psy14768        401 MNFLVDRIICSKRMEE  416 (452)
Q Consensus       401 f~~i~~~i~~~~~~~~  416 (452)
                      |+++++.+.+.+...+
T Consensus       160 f~~l~~~i~~~~~~~~  175 (184)
T d1vg8a_         160 FQTIARNALKQETEVE  175 (184)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccc
Confidence            9999999888766443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.3e-29  Score=220.33  Aligned_cols=161  Identities=28%  Similarity=0.542  Sum_probs=148.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++++...+.+|.+.++....+..   ++..+.+.+|||+|++.+..++..++..+|++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~---~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~   79 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI---NEHTVKFEIWDTAGQERFASLAPMYYRNAQAA   79 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE---TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccc---ccccccccccccCCchhHHHHHHHHHhccceE
Confidence            479999999999999999999999999999999999998888887   89999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      |+|||++++.||+.+..|+..+...    .....|+++|+||+|+.+    +++..++++++++..++. |++|||++|.
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~  154 (170)
T d1ek0a_          80 LVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGE  154 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECCTTTCT
T ss_pred             EEEEeCCcccchhhhhhhhhhhccc----cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCE-EEEecCCCCc
Confidence            9999999999999999998877666    567799999999999854    688999999999999985 9999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRI  408 (452)
Q Consensus       396 nv~~lf~~i~~~i  408 (452)
                      ||+++|+.|++.+
T Consensus       155 gV~e~F~~i~~~i  167 (170)
T d1ek0a_         155 NVNDVFLGIGEKI  167 (170)
T ss_dssp             THHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=219.91  Aligned_cols=165  Identities=29%  Similarity=0.592  Sum_probs=146.8

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|++|||||||+++|+++.+...+.++++.+.....+..   ++..+.+.+||++|+++|..++..+++.+|++
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE---TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEE---CCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            379999999999999999999999999998899988888888877   89999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      |+|||++++.||+.+..|+..+...    ...++|++||+||+|+.+ +....+....+....+.. |++|||++|.||+
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~----~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~g~~i~  155 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVE  155 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHh----cCCCCcEEEEEeeecccccccchHHHHHHhhcccCce-EEEEecCCCcCHH
Confidence            9999999999999999999998877    456799999999999987 666777778888887765 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy14768        399 DSMNFLVDRIICSK  412 (452)
Q Consensus       399 ~lf~~i~~~i~~~~  412 (452)
                      ++|+++++.+.+..
T Consensus       156 e~f~~l~~~i~~~~  169 (175)
T d2f9la1         156 EAFKNILTEIYRIV  169 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999986543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.9e-29  Score=223.68  Aligned_cols=164  Identities=26%  Similarity=0.452  Sum_probs=143.4

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|++|||||||+++|+.+.|...+.+|++ +.....+..   ++..+.+.+||++|++.|..++..+++++|
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   78 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV---DGKPVNLGLWDTAGQEDYDRLRPLSYPQTD   78 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEE---TTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeec---cCcceEEEeecccccccchhhhhhcccccc
Confidence            4568999999999999999999999999999999887 445556666   889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHH-HHHHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQ-WKHDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNF  383 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~-~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~  383 (452)
                      ++|+|||+++..||+++.. |...+..+     ..++|++||+||+|+.+             ......++..++++++.
T Consensus        79 ~~ilv~d~~~~~sf~~i~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  153 (183)
T d1mh1a_          79 VSLICFSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA  153 (183)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH-----STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred             eeeeeeccchHHHHHHHHHHHHHHHHHh-----CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCC
Confidence            9999999999999999976 55555443     46799999999999853             34567788899999998


Q ss_pred             CEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        384 MSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       384 ~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      ..|+||||++|.||+++|+.+++.+++
T Consensus       154 ~~~~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         154 VKYLECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             ceEEEcCCCCCcCHHHHHHHHHHHHcC
Confidence            889999999999999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.3e-29  Score=223.92  Aligned_cols=168  Identities=31%  Similarity=0.567  Sum_probs=147.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee-------cCCeeEEEEEEecCCcchhhhhhhhh
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK-------YGGRPVKLQIWDIAGQDRYICMSRVY  312 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~-------~~~~~~~l~l~DtaG~e~~~~~~~~~  312 (452)
                      .+||+++|.+|||||||+++|+++.+...+.++.+.++....+.+..       .....+.+.+|||+|+++|..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            48999999999999999999999999999989988888777765521       11234789999999999999999999


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++++|++|+|||+++..+|+.+..|+..+....   .....|++||+||+|+.+ +++..+++.++++++++. |++|||
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~-~~e~Sa  160 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETSA  160 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEBT
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhc---cCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCE-EEEEeC
Confidence            999999999999999999999999988776542   346689999999999987 789999999999999986 999999


Q ss_pred             CCCccHHHHHHHHHHHHHHh
Q psy14768        392 KEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~~  411 (452)
                      ++|.||+++|+++++.+.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.9e-28  Score=217.44  Aligned_cols=162  Identities=32%  Similarity=0.586  Sum_probs=144.9

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|.+|||||||+++|+++++...+.+|++.++....+.+   ++..+.+.+|||+|++.|..++..+++++|++|
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI---NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   79 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES---SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEE---CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            79999999999999999999999999999999999999999988   889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHHH
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIEDS  400 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~l  400 (452)
                      +|||++++.||+++..|+..+...    .....|+++++||.|+.++....+++++++...++. |++|||++|.||+++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~e~  154 (166)
T d1g16a_          80 LVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSAKNDDNVNEI  154 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred             EEEECCCccCHHHHHhhhhhhhcc----ccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCe-EEEECCCCCCCHHHH
Confidence            999999999999999988888777    567789999999999988788899999999999986 999999999999999


Q ss_pred             HHHHHHHHHH
Q psy14768        401 MNFLVDRIIC  410 (452)
Q Consensus       401 f~~i~~~i~~  410 (452)
                      |++|++.+.+
T Consensus       155 f~~l~~~i~~  164 (166)
T d1g16a_         155 FFTLAKLIQE  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-28  Score=216.31  Aligned_cols=163  Identities=29%  Similarity=0.606  Sum_probs=139.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccc-cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDN-YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~-~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ..+||+++|+++||||||+++++++.+... +.++++.++....+..   ++..+.+.||||+|++.+..++..+++++|
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV---DGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE---TTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEe---cCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            358999999999999999999999887654 4566788888888877   889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      ++++|||+++..||+.+..|+..+...    .....|++||+||+|+.+ ..+..+++..+++.+++. |++|||++|.|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~g  156 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEY----AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSAKTGLN  156 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCTTTCTT
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhc----cCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCE-EEEEeCCCCcC
Confidence            999999999999999999988887776    456789999999999987 788899999999999986 99999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRII  409 (452)
Q Consensus       397 v~~lf~~i~~~i~  409 (452)
                      |+++|++|++.+.
T Consensus       157 i~e~f~~l~~~i~  169 (170)
T d2g6ba1         157 VDLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999998875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-28  Score=217.59  Aligned_cols=170  Identities=32%  Similarity=0.575  Sum_probs=155.5

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .++||+++|.+|||||||+++|.++.+...+.++++..+....+.+   ++..+.+.+|||+|++++..++..+++++|+
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV---DGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE---TTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEE---eccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3589999999999999999999999999999999998888888877   8899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      +|+|||+++..+|+.+..|+..+.+..   .....|+++++||.|..++++..+++.++++++++. |++|||++|.||+
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCC---SCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCTTTCTTHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccc---cccceeeEEEeeccccccccccHHHHHHHHHHCCCE-EEEEeCCCCCCHH
Confidence            999999999999999999999887653   445689999999999887889999999999999986 9999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy14768        399 DSMNFLVDRIICSKRME  415 (452)
Q Consensus       399 ~lf~~i~~~i~~~~~~~  415 (452)
                      ++|+++++.+++.....
T Consensus       159 e~f~~l~~~l~~~p~l~  175 (177)
T d1x3sa1         159 CAFEELVEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHHHHHHHTSGGGT
T ss_pred             HHHHHHHHHHccCcccc
Confidence            99999999999876543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.1e-28  Score=217.83  Aligned_cols=162  Identities=23%  Similarity=0.357  Sum_probs=142.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.++||||||+++|+.+.+...+.+|++. .....+..   ++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   77 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEI---DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   77 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEC---SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccc---cceEEeeccccccccccccccccchhhhhhhh
Confidence            478999999999999999999999999999888874 44455556   88999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHH-HHHHhhhhhcCCCCCcEEEEEECCCCCC-------------CcccHHHHHHHHHHcCCCE
Q psy14768        320 IIMFDLTNRKSFESVVQWK-HDLDSKCILDNGAMLPCLLLASKCDLPD-------------RQVEINEIEAVCHQYNFMS  385 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~-~~i~~~~~~~~~~~~piilV~NK~Dl~~-------------~~~~~e~~~~~~~~~~~~~  385 (452)
                      |+|||++++.||+.+..|+ ..+...     ..+.|++|||||+|+.+             +.++.+++..++++++...
T Consensus        78 ilv~d~~~~~Sf~~~~~~~~~~~~~~-----~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~  152 (179)
T d1m7ba_          78 LICFDISRPETLDSVLKKWKGEIQEF-----CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  152 (179)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-----CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             heeeecccCCCHHHHHHHHHHHHhcc-----CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCe
Confidence            9999999999999997754 444443     46799999999999852             4588999999999999888


Q ss_pred             EEEecCCCCcc-HHHHHHHHHHHHHH
Q psy14768        386 WIEVSSKEHLM-IEDSMNFLVDRIIC  410 (452)
Q Consensus       386 ~~evSAktg~n-v~~lf~~i~~~i~~  410 (452)
                      |+||||++|.| |+++|+.+++.+++
T Consensus       153 y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         153 YIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            99999999986 99999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=217.17  Aligned_cols=164  Identities=21%  Similarity=0.369  Sum_probs=139.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecC---CcchhhhhhhhhhcC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIA---GQDRYICMSRVYYQN  315 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~Dta---G~e~~~~~~~~~i~~  315 (452)
                      .+||+++|++|||||||+++|.+..+. ....++++.++....+.+   +++.+.+.+||++   |+++|  ++..++++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~   77 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV---DGESATIILLDMWENKGENEW--LHDHCMQV   77 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE---TTEEEEEEEECCTTTTHHHHH--HHHCCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeecc---CCceeeeeeeccccccccccc--cccccccc
Confidence            489999999999999999999976543 455677888888888887   8899999999865   56666  56778999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCCC
Q psy14768        316 SDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       316 ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAktg  394 (452)
                      +|++|+|||+++..||+.+..|...+....   ...++|++||+||+|+.+ +++..+++++++..+++. |++|||++|
T Consensus        78 ~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~Sak~g  153 (172)
T d2g3ya1          78 GDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQ  153 (172)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSG---GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECBTTTT
T ss_pred             cceeeeeecccccchhhhhhhhhhhhhhcc---ccCCceEEEEeccccccccccccHHHHHHHHHHcCCe-EEEEeCCCC
Confidence            999999999999999999999998887652   345799999999999987 788999999999999985 999999999


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q psy14768        395 LMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~~~  412 (452)
                      .||+++|+.|++.+..++
T Consensus       154 ~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         154 HNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             BSHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHcc
Confidence            999999999999886553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.7e-27  Score=209.10  Aligned_cols=167  Identities=19%  Similarity=0.306  Sum_probs=139.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|+++||||||+++|+++.+.. +.++.+..+ ...+.+   ++..+.+.+|||+|++++     .+++.+|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v---~~~~~~l~i~Dt~g~~~~-----~~~~~ad~   73 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV---DGQTHLVLIREEAGAPDA-----KFSGWADA   73 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEE---TTEEEEEEEEECSSCCCH-----HHHHHCSE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeec---CceEEEEEEeeccccccc-----ccccccce
Confidence            46999999999999999999999988754 445655544 566677   899999999999998764     37889999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC---CcccHHHHHHHHHHcCCCEEEEecCCCCc
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD---RQVEINEIEAVCHQYNFMSWIEVSSKEHL  395 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~e~~~~~~~~~~~~~~~evSAktg~  395 (452)
                      +|||||++++.||+++..|+..+.... ......+|++||+||.|+..   +.+..++++.++.+.....|+||||++|.
T Consensus        74 ~ilVfd~~~~~Sf~~~~~~~~~i~~~~-~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1          74 VIFVFSLEDENSFQAVSRLHGQLSSLR-GEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGL  152 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTB
T ss_pred             eEEEeecccchhhhhhHHHHHHHHHHh-hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCc
Confidence            999999999999999999998886652 11346789999999999854   67888899999888766679999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhhhH
Q psy14768        396 MIEDSMNFLVDRIICSKRMEE  416 (452)
Q Consensus       396 nv~~lf~~i~~~i~~~~~~~~  416 (452)
                      ||+++|..+++.+...+++.+
T Consensus       153 ~v~~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         153 NVDRVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             THHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999988776543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.2e-27  Score=208.18  Aligned_cols=159  Identities=31%  Similarity=0.560  Sum_probs=142.2

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-hhhhhhcCCCE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-MSRVYYQNSDG  318 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-~~~~~i~~ad~  318 (452)
                      .+||+++|.+|||||||+++|+++.+...+.++.+..+.......   ......+.+||++|.+.+.. .+..+++++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   78 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI---DGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   78 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE---TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeee---eccceEEEEEeccCchhhccccceeeecCCCc
Confidence            379999999999999999999999999999999998888888777   88899999999999887654 56788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCCC---C
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSKE---H  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAkt---g  394 (452)
                      +|+|||++++.||+.+..|+..+.+..   ...++|++|||||+|+.+ +++..++++++++++++. |++|||++   +
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SAkt~~~~  154 (165)
T d1z06a1          79 VVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDN  154 (165)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSSSGGGG
T ss_pred             eEEEEEeehhhhhhhhhhhhHHHHhhc---cCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCE-EEEEecccCCcC
Confidence            999999999999999999999887763   346799999999999987 788999999999999986 99999998   4


Q ss_pred             ccHHHHHHHHH
Q psy14768        395 LMIEDSMNFLV  405 (452)
Q Consensus       395 ~nv~~lf~~i~  405 (452)
                      +||+++|++|+
T Consensus       155 ~~V~e~F~~lA  165 (165)
T d1z06a1         155 DHVEAIFMTLA  165 (165)
T ss_dssp             SCHHHHHHHHC
T ss_pred             cCHHHHHHHhC
Confidence            59999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.92  E-value=6.8e-26  Score=200.48  Aligned_cols=156  Identities=24%  Similarity=0.399  Sum_probs=126.4

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|++|||||||+++|.++.+...+.+|++.++...  ..     ..+.+.+||++|++.+...+..++..+|++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~--~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   74 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--TK-----GNVTIKLWDIGGQPRFRSMWERYCRGVSAI   74 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--EE-----TTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeee--ee-----eeEEEEEeeccccccccccccccccccchh
Confidence            58999999999999999999999999888989988766543  23     457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCCCC
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSKEH  394 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAktg  394 (452)
                      ++|||+++..+|.....|+..+....   ...++|++||+||.|+.+.. ...++.+..     ...+ ..+++|||++|
T Consensus        75 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~-~~~~e~Sa~~g  149 (164)
T d1zd9a1          75 VYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDRE-ICCYSISCKEK  149 (164)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSC-EEEEECCTTTC
T ss_pred             hcccccccccccchhhhhhhhhhhhh---cccCCcEEEEEeccccchhh-hHHHHHHHHHHHHHHhCC-CEEEEEeCcCC
Confidence            99999999999999988777665442   34679999999999987522 222222221     1223 34899999999


Q ss_pred             ccHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDR  407 (452)
Q Consensus       395 ~nv~~lf~~i~~~  407 (452)
                      .||+++|++|++.
T Consensus       150 ~gv~e~~~~l~~~  162 (164)
T d1zd9a1         150 DNIDITLQWLIQH  162 (164)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHc
Confidence            9999999999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.91  E-value=1.5e-25  Score=200.14  Aligned_cols=164  Identities=24%  Similarity=0.327  Sum_probs=125.5

Q ss_pred             cCCCCCCCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768        232 TLSPIQIPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV  311 (452)
Q Consensus       232 ~l~~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~  311 (452)
                      .++......+||+++|++|||||||+|+|.++.+... .++.+.+..  .+..     ..+.+.+||++|++.++.++..
T Consensus         8 k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~~--~i~~-----~~~~~~i~d~~g~~~~~~~~~~   79 (176)
T d1fzqa_           8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIK--SVQS-----QGFKLNVWDIGGQRKIRPYWRS   79 (176)
T ss_dssp             HCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEEEE--EEEE-----TTEEEEEEECSSCGGGHHHHHH
T ss_pred             HhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeeeEE--Eecc-----CCeeEeEeeccccccchhHHHH
Confidence            3445556679999999999999999999998877533 344554332  3333     4578999999999999999999


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHH----HcCCCEEE
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCH----QYNFMSWI  387 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~----~~~~~~~~  387 (452)
                      +++.+|++|+|||+++..+++++..|+..+....   ...++|++||+||+|+.+. ...+...+...    ......|+
T Consensus        80 ~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~---~~~~~pillv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  155 (176)
T d1fzqa_          80 YFENTDILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTA-APASEIAEGLNLHTIRDRVWQIQ  155 (176)
T ss_dssp             HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             HhhccceeEEeeccccccchhhhhhhhhhhhhhh---ccCCCeEEEEEEecccccc-ccHHHHHHHHHHHHHHhcCCEEE
Confidence            9999999999999999999999988777665542   3457999999999999752 22222222211    11223489


Q ss_pred             EecCCCCccHHHHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       388 evSAktg~nv~~lf~~i~~~  407 (452)
                      +|||++|+||+++|++|++.
T Consensus       156 ~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         156 SCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             ECCTTTCTTHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHhc
Confidence            99999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=5.4e-24  Score=187.95  Aligned_cols=159  Identities=25%  Similarity=0.363  Sum_probs=122.5

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||+++|.++.+ ..+.+|.+.....  +.     .+.+.+.+|||+|++.++..+..+++.+|++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~--~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   73 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT--LE-----HRGFKLNIWDVGGQKSLRSYWRNYFESTDGL   73 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEE--EE-----ETTEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeee--cc-----ccccceeeeecCcchhhhhHHHhhhhhhhcc
Confidence            57999999999999999999987765 4566777654433  33     3557899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH--HHcC--CCEEEEecCCCCc
Q psy14768        320 IIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC--HQYN--FMSWIEVSSKEHL  395 (452)
Q Consensus       320 IlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~--~~~~--~~~~~evSAktg~  395 (452)
                      ++|||+++..++.....++..+....   ...++|++||+||+|+.+.. ..++.....  ....  ...+++|||++|.
T Consensus        74 i~v~d~~d~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_          74 IWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGAL-SCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeeeecccchhHHHHHHhhhhhhhhc---ccCCCceEEEEecccccccc-CHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            99999999999988877655443321   34679999999999997622 222322222  1121  2347999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy14768        396 MIEDSMNFLVDRIIC  410 (452)
Q Consensus       396 nv~~lf~~i~~~i~~  410 (452)
                      ||.++|++|++.+.+
T Consensus       150 gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         150 DLLPGIDWLLDDISS  164 (165)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999988764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=4.3e-25  Score=198.53  Aligned_cols=161  Identities=22%  Similarity=0.314  Sum_probs=121.6

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|.+|||||||++++.++.+. ...+|.+.......       .+.+.+.+||++|++.+..++..++..+|
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~-------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLS-------YKNLKLNVWDLGGQTSIRPYWRCYYADTA   86 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEE-------ETTEEEEEEEEC----CCTTGGGTTTTEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEe-------eCCEEEEEEecccccccchhHHhhhccce
Confidence            44799999999999999999999987664 34466665543332       24578999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHH-----HHcCCCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVC-----HQYNFMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~-----~~~~~~~~~evSAk  392 (452)
                      ++++|||+++..++.....|+..+....   ...+.|++||+||+|+.+ ....+++.+..     ...++ .|++|||+
T Consensus        87 ~ii~v~d~~d~~s~~~~~~~l~~~~~~~---~~~~~piliv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~-~~~e~SA~  161 (182)
T d1moza_          87 AVIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPG-ALSASEVSKELNLVELKDRSW-SIVASSAI  161 (182)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTT-CCCHHHHHHHTTTTTCCSSCE-EEEEEBGG
T ss_pred             eEEEEeeecccccchhHHHHHHHHHHhh---ccCCcceEEEEEeecccc-ccCHHHHHHHHHHHHHhhCCC-EEEEEECC
Confidence            9999999999999999888776654431   456799999999999975 22333333221     12222 48999999


Q ss_pred             CCccHHHHHHHHHHHHHHh
Q psy14768        393 EHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i~~~  411 (452)
                      +|+||+++|++|++.+.+.
T Consensus       162 ~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         162 KGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=192.67  Aligned_cols=158  Identities=23%  Similarity=0.328  Sum_probs=121.0

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ...+||+++|++|||||||++++.++.+.. ..+|.+......       ....+.+.+||++|++.++..+..+++.+|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   81 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETV-------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ   81 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEEE-------EETTEEEEEEEESCCGGGHHHHGGGTTTCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEEe-------eccceeeEEecCCCcchhhhHHHhhhcccc
Confidence            346899999999999999999999876543 335555443322       235578999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH-----HHHcCCCEEEEecCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV-----CHQYNFMSWIEVSSK  392 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~-----~~~~~~~~~~evSAk  392 (452)
                      ++|+|||+++..++..+..|+..+....   .....|++||+||+|+.+. ....++...     +...++ .+++|||+
T Consensus        82 ~ii~v~D~s~~~~~~~~~~~l~~~~~~~---~~~~~piiiv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~-~~~e~SA~  156 (173)
T d1e0sa_          82 GLIFVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNW-YVQPSCAT  156 (173)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCE-EEEECBTT
T ss_pred             eEEEEEecccchhHHHHHHHHHHHhhhc---ccccceeeeeeeccccccc-ccHHHHHHHHHHHHHHhCCC-EEEEeeCC
Confidence            9999999999999999988776665431   3467999999999999752 222222221     112233 37899999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy14768        393 EHLMIEDSMNFLVDRI  408 (452)
Q Consensus       393 tg~nv~~lf~~i~~~i  408 (452)
                      +|+||+++|++|.+.+
T Consensus       157 tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         157 SGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTBTHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHhc
Confidence            9999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.88  E-value=1.9e-23  Score=182.23  Aligned_cols=156  Identities=17%  Similarity=0.238  Sum_probs=121.0

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEE
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCI  320 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vI  320 (452)
                      +||+++|++|||||||+++|+++.+...+......     ....   +...+.+.+||++|++.+...+..++..+++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   72 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETV---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   72 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEE---ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEE---eeeeEEEEEecCCCcccchhhhhhhhccceeEE
Confidence            58999999999999999999988876554433321     1122   456788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc----ccHHHHHHHHHHcCCCEEEEecCCCCcc
Q psy14768        321 IMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ----VEINEIEAVCHQYNFMSWIEVSSKEHLM  396 (452)
Q Consensus       321 lV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~----~~~e~~~~~~~~~~~~~~~evSAktg~n  396 (452)
                      +|||+++..++..+..|...+....   ....+|+++++||.|+.+..    +..+....++...+. .|++|||++|.|
T Consensus        73 ~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~SAktg~g  148 (160)
T d1r8sa_          73 FVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW-YIQATCATSGDG  148 (160)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE-EEEECBTTTTBT
T ss_pred             EEEEecChHHHHHHHHHHHHHHHhh---cccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCC-EEEEeECCCCCC
Confidence            9999999999999988877776542   34668999999999987622    111222223333344 489999999999


Q ss_pred             HHHHHHHHHHHH
Q psy14768        397 IEDSMNFLVDRI  408 (452)
Q Consensus       397 v~~lf~~i~~~i  408 (452)
                      |+++|++|++++
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=3e-21  Score=172.47  Aligned_cols=155  Identities=14%  Similarity=0.098  Sum_probs=114.6

Q ss_pred             ccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMSRV  311 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~~~  311 (452)
                      -+|+++|.+|||||||+|+|++... .....++++.+........     ....+.+|||+|+....        .....
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-----~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-----GRRQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-----TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee-----eeeeeeecccccccccccccchhccccccc
Confidence            4699999999999999999998653 3444555555555544444     34578899999974432        22234


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++++||++|+|+|++++.+..+ ..|...+...     ..++|+++|+||+|+.+.  ..+..+.+.+.++...++++||
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-----~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~iSA  152 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-----VGKVPILLVGNKLDAAKY--PEEAMKAYHELLPEAEPRMLSA  152 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-----TTTSCEEEEEECGGGCSS--HHHHHHHHHHTSTTSEEEECCT
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-----ccchhhhhhhcccccccC--HHHHHHHHHhhcccCceEEEec
Confidence            6789999999999998876654 3455555543     356899999999999752  2344566677777777899999


Q ss_pred             CCCccHHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i  408 (452)
                      ++|.||++++++|++.+
T Consensus       153 ~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         153 LDERQVAELKADLLALM  169 (178)
T ss_dssp             TCHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999998654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=5.9e-21  Score=171.78  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=114.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|..|||||||+++|....+     +|++..  ...+     +...+.+++|||+|++.|..++..+++.++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~--~~~~-----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~   69 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV--ETHF-----TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAI   69 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHS-----CCCSEE--EEEE-----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCC-----CCccEE--EEEE-----EeeeeeeeeeccccccccccchhhcccCCcee
Confidence            58999999999999999999876554     344432  2223     33567899999999999999999999999999


Q ss_pred             EEEEeCCChhhH-----------HHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC----------------CcccHH
Q psy14768        320 IIMFDLTNRKSF-----------ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD----------------RQVEIN  372 (452)
Q Consensus       320 IlV~D~t~~~S~-----------~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~----------------~~~~~e  372 (452)
                      ++|||+++..+|           +....|...+...    .....|+++++||+|+..                .....+
T Consensus        70 i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~----~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (195)
T d1svsa1          70 IFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK----WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE  145 (195)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG----GGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHH
T ss_pred             eeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccc----ccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHH
Confidence            999999998765           2333455444433    567799999999999621                111222


Q ss_pred             HHHH-HHHHc---------CCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        373 EIEA-VCHQY---------NFMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       373 ~~~~-~~~~~---------~~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +... +...+         ....++||||+++.||+++|+.+.+.+++.
T Consensus       146 ~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         146 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            2221 11111         123367999999999999999999888764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.5e-20  Score=169.77  Aligned_cols=160  Identities=14%  Similarity=0.093  Sum_probs=124.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      ++||+++|..+||||||+++|..+.+  .+.||+|.++...       ....+.+.+||++|++.+..++..+++.++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~-------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   72 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPF-------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSI   72 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEE-------ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEE-------eccceeeeecccccccccccccccccccccee
Confidence            58999999999999999999987766  4679999776443       33567899999999999999999999999999


Q ss_pred             EEEEeCCChh-----------hHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----------------CcccH
Q psy14768        320 IIMFDLTNRK-----------SFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----------------RQVEI  371 (452)
Q Consensus       320 IlV~D~t~~~-----------S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----------------~~~~~  371 (452)
                      ++|||+++..           .++....|...+...    ...+.|+++|+||.|+.+                 .+...
T Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~----~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  148 (200)
T d2bcjq2          73 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYP----WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA  148 (200)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG----GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCH
T ss_pred             eEeeeccchhhhhhhhccccchHHHHHHHHHHHhhh----hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhH
Confidence            9999998863           456667787777665    467899999999999742                 11222


Q ss_pred             HHHHHHHH----Hc-----CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        372 NEIEAVCH----QY-----NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       372 e~~~~~~~----~~-----~~~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      +....+..    ..     ....+++|||++|.||+++|+.+.+.|++.+
T Consensus       149 ~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         149 QAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            22233221    11     1133689999999999999999998887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.1e-20  Score=169.31  Aligned_cols=163  Identities=11%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEE
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGC  319 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~v  319 (452)
                      .+||+++|.+|||||||+++|   .+...+.||+|.+...  +.     .+.+.+.+||++|++.++..+..++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~--~~-----~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~   71 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD--FE-----IKNVPFKMVDVGGQRSERKRWFECFDSVTSI   71 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEE--EE-----ETTEEEEEEEECC-------CTTSCTTCCEE
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEE--Ee-----eeeeeeeeecccceeeeccccccccccccee
Confidence            479999999999999999999   4777888999965533  33     3567899999999999999999999999999


Q ss_pred             EEEEeCCChhhH-------HHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-----------------CcccHHHHH
Q psy14768        320 IIMFDLTNRKSF-------ESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-----------------RQVEINEIE  375 (452)
Q Consensus       320 IlV~D~t~~~S~-------~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-----------------~~~~~e~~~  375 (452)
                      ++|||.++..++       ..+..+...+...++.....++|++||+||+|+.+                 .....+.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~  151 (200)
T d1zcba2          72 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ  151 (200)
T ss_dssp             EEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHH
T ss_pred             EEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHH
Confidence            999999986432       22333333333332223567899999999999742                 112223333


Q ss_pred             HHHHHc----------CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        376 AVCHQY----------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       376 ~~~~~~----------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ++....          ....+++|||+++.||+++|+.+.+.|++.+
T Consensus       152 ~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         152 KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            333221          1133578999999999999999988887654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.81  E-value=2.2e-20  Score=165.79  Aligned_cols=159  Identities=18%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ..++||+++|.+|||||||++++.++.+... .++.+...  ..+..     ..+.+.+||+++++.+...+..++..++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~--~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~   84 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNV--EEIVI-----NNTRFLMWDIGGQESLRSSWNTYYTNTE   84 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSC--EEEEE-----TTEEEEEEECCC----CGGGHHHHTTCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeE--EEEee-----cceEEEEeccccccccccchhhhhccce
Confidence            3468999999999999999999998776543 23333322  22222     4578899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----CCCEEEEecCCC
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----NFMSWIEVSSKE  393 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----~~~~~~evSAkt  393 (452)
                      ++++|+|.++..++.....+........   .....|++||+||+|+.... ..+++.......    ...+|++|||++
T Consensus        85 ~~i~v~d~~d~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~t  160 (177)
T d1zj6a1          85 FVIVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQWHIQACCALT  160 (177)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             eeeeecccccccchhhhhhhhhhhhhcc---cccceEEEEEEEcccccccC-cHHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence            9999999999999988876555554432   34679999999999987522 233333332211    223589999999


Q ss_pred             CccHHHHHHHHHHHH
Q psy14768        394 HLMIEDSMNFLVDRI  408 (452)
Q Consensus       394 g~nv~~lf~~i~~~i  408 (452)
                      |+||+++|++|.+.+
T Consensus       161 g~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         161 GEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.81  E-value=3.4e-20  Score=162.35  Aligned_cols=160  Identities=18%  Similarity=0.264  Sum_probs=120.6

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      .++||+++|++|||||||+++++++.+... .++.+....  ..     ..+.+.+.+||+++.+.+.......+...++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVE--TV-----TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDA   75 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE--EE-----EETTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeee--ee-----ccCceEEEEeeccccccccccchhhhhhhhh
Confidence            358999999999999999999998877643 344443222  22     2345788899999999999888899999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH----HHHcCCCEEEEecCCCC
Q psy14768        319 CIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV----CHQYNFMSWIEVSSKEH  394 (452)
Q Consensus       319 vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~----~~~~~~~~~~evSAktg  394 (452)
                      +++++|+++..++.....+........   .....|+++|+||+|+.+.....+....+    +...+ .+|++|||++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~~~SA~~g  151 (169)
T d1upta_          76 VIYVVDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK-WQIFKTSATKG  151 (169)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC-EEEEECCTTTC
T ss_pred             hhhhhhhhhcchhhhccchhhhhhhhh---ccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCC-CEEEEEeCCCC
Confidence            999999999988888876544443331   34678999999999998633222332222    22233 35899999999


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy14768        395 LMIEDSMNFLVDRIIC  410 (452)
Q Consensus       395 ~nv~~lf~~i~~~i~~  410 (452)
                      .||+++|++|++.+.+
T Consensus       152 ~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         152 TGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.5e-19  Score=155.64  Aligned_cols=153  Identities=16%  Similarity=0.211  Sum_probs=117.6

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCII  321 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIl  321 (452)
                      ||+++|++|||||||+|++.++.+. ...++.+....  ..     ....+.+.+||+.|...+...+..++..++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--EL-----AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF   73 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EE-----CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE--Ee-----ccCCeeEEEEeeccchhhhhhHhhhhhheeeeee
Confidence            7999999999999999999987764 44566654332  22     3345668899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHH-----------cCCCEEEEec
Q psy14768        322 MFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQ-----------YNFMSWIEVS  390 (452)
Q Consensus       322 V~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~-----------~~~~~~~evS  390 (452)
                      ++|.++..++.....|...+....   ...+.|+++++||.|+.. .....++.+....           .....+++||
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~~k~d~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (166)
T d2qtvb1          74 LVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  149 (166)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCT---TTTTCCEEEEEECTTSSS-CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEB
T ss_pred             eccccchhhhhhhhHHHHhhhhhh---ccCCceEEEEeccccccc-cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEee
Confidence            999999999988877766665542   557799999999999874 3333433333211           1123489999


Q ss_pred             CCCCccHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVD  406 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~  406 (452)
                      |++|+||+++|++|.+
T Consensus       150 A~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         150 VVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTTBSHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHhC
Confidence            9999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.8e-20  Score=164.06  Aligned_cols=150  Identities=17%  Similarity=0.207  Sum_probs=113.6

Q ss_pred             ccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh--------hhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI--------CMSRV  311 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~--------~~~~~  311 (452)
                      +||+++|.+|||||||+|+|++... .....++++.+.....+..   .  ...+.+||++|.....        .....
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI---D--GMPLHIIDTAGLREASDEVERIGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE---T--TEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeec---c--CceeeeccccccccccccchhHHHHHHHH
Confidence            6899999999999999999997543 3455566666665555554   3  4567899999964322        11234


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++..+|++++++|+.+..+++....|...+...     ..++|++||+||+|+.+....       ..+....+++++||
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSA  144 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-----PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSA  144 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-----CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCT
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhc-----ccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEEC
Confidence            688999999999999998888888877776654     356999999999998652111       11234556999999


Q ss_pred             CCCccHHHHHHHHHHH
Q psy14768        392 KEHLMIEDSMNFLVDR  407 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~  407 (452)
                      ++|.||++++++|++.
T Consensus       145 k~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.79  E-value=8.8e-20  Score=163.31  Aligned_cols=160  Identities=13%  Similarity=0.105  Sum_probs=109.7

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccC-------CcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYK-------NTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV  311 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~-------~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~  311 (452)
                      ..++|+++|++|+|||||+|+|++........       .+++.+.....+     ......+.++|++|+..|...+..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~d~~g~~~~~~~~~~   78 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAF-----KLENYRITLVDAPGHADLIRAVVS   78 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEE-----EETTEEEEECCCSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccc-----ccCCccccccccccccccccchhh
Confidence            45789999999999999999998633221111       111111111111     224466889999999999888888


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---ccHHHHHHHHHHc---CCCE
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---VEINEIEAVCHQY---NFMS  385 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~e~~~~~~~~~---~~~~  385 (452)
                      .+..+|++++|+|+.++...+..+.|......        ++|+++|+||+|+.+..   ...+..+.+....   ...+
T Consensus        79 ~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~--------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1wb1a4          79 AADIIDLALIVVDAKEGPKTQTGEHMLILDHF--------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  150 (179)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             hhhhccccccccccccccchhhhhhhhhhhhc--------CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence            89999999999999998877766555433333        48999999999998611   1122233333332   2235


Q ss_pred             EEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        386 WIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       386 ~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      ++++||++|.|++++++.|.+.+-+.
T Consensus       151 iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         151 IIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            89999999999999999999877653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=3.2e-19  Score=159.30  Aligned_cols=162  Identities=10%  Similarity=0.054  Sum_probs=104.2

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchh-------hhhhhhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRY-------ICMSRVYY  313 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~-------~~~~~~~i  313 (452)
                      ..|+++|.+|||||||+|+|++.........+.+.+...... .   ......+.+|||+|....       .......+
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~   77 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-E---VSEEERFTLADIPGIIEGASEGKGLGLEFLRHI   77 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-E---CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-e---ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHH
Confidence            359999999999999999999854433322333322222111 1   334456889999995421       11223457


Q ss_pred             cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCC
Q psy14768        314 QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKE  393 (452)
Q Consensus       314 ~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAkt  393 (452)
                      ..++++++++|+.... +.....|...+....  ....++|+++|+||+|+.+.. ..++..+.....+.. ++++||++
T Consensus        78 ~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~~~~~-~~~iSA~t  152 (180)
T d1udxa2          78 ARTRVLLYVLDAADEP-LKTLETLRKEVGAYD--PALLRRPSLVALNKVDLLEEE-AVKALADALAREGLA-VLPVSALT  152 (180)
T ss_dssp             TSSSEEEEEEETTSCH-HHHHHHHHHHHHHHC--HHHHHSCEEEEEECCTTSCHH-HHHHHHHHHHTTTSC-EEECCTTT
T ss_pred             Hhhhhhhhhccccccc-ccchhhhhhhhhccc--cccchhhhhhhhhhhhhhhHH-HHHHHHHHHHhcCCe-EEEEEcCC
Confidence            8999999999987542 233333333322210  011348999999999998622 223344455555555 99999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy14768        394 HLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       394 g~nv~~lf~~i~~~i~~~  411 (452)
                      |.||+++++.|.+.+...
T Consensus       153 g~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         153 GAGLPALKEALHALVRST  170 (180)
T ss_dssp             CTTHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHhhc
Confidence            999999999998887543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.8e-19  Score=155.41  Aligned_cols=156  Identities=15%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             cEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch---------hhhhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR---------YICMSRV  311 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~---------~~~~~~~  311 (452)
                      +|+++|.+|||||||+|+|++... ..+..++++.......+.     .....+.+||++|...         +......
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   76 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVE-----WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLN   76 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEE-----ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccc-----ccccccccccccceeeeecccccccccccccc
Confidence            689999999999999999998543 234344444444444433     3556788999999422         1222344


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEecC
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSS  391 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSA  391 (452)
                      ++..+|++++++|.++....++. .+...+...       ++|+|||+||+|+.+ +. ..+..+...+.++..++++||
T Consensus        77 ~~~~ad~i~~~~~~~~~~~~~~~-~~~~~l~~~-------~~pviiv~NK~Dl~~-~~-~~~~~~~~~~~~~~~~i~iSA  146 (171)
T d1mkya1          77 MIREADLVLFVVDGKRGITKEDE-SLADFLRKS-------TVDTILVANKAENLR-EF-EREVKPELYSLGFGEPIPVSA  146 (171)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHH-HHHHHHHHH-------TCCEEEEEESCCSHH-HH-HHHTHHHHGGGSSCSCEECBT
T ss_pred             ccccCcEEEEeeccccccccccc-ccccccccc-------cccccccchhhhhhh-hh-hhHHHHHHHhcCCCCeEEEec
Confidence            57899999999999887766654 344444443       389999999999864 11 122222233345556799999


Q ss_pred             CCCccHHHHHHHHHHHHHHhh
Q psy14768        392 KEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       392 ktg~nv~~lf~~i~~~i~~~~  412 (452)
                      ++|.||++++++|++.+.+..
T Consensus       147 k~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999998876554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2e-18  Score=154.56  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             CcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-----------
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-----------  306 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-----------  306 (452)
                      ..++|+++|.+|||||||+|++++... .....++++.......+..   ++  ..+.++|++|.....           
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~--~~~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI---DG--RKYVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE---TT--EEEEESSCSCC-----------CCSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeecc---CC--ceeeeeccCCccccccccccccccch
Confidence            468999999999999999999998543 3343444444443334444   43  457788999964322           


Q ss_pred             -hhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHH-H---
Q psy14768        307 -CMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCH-Q---  380 (452)
Q Consensus       307 -~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~-~---  380 (452)
                       .....+++.+|++++|+|+..+...+.. .+...+...       ++|+|+|+||+|+.. .+...++..+... .   
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~~~~-~~~~~~~~~-------~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMERR-------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF  153 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred             hHHHHHHHhcCCEEEEeecccccchhhHH-HHHHHHHHc-------CCceeeeccchhhhcchhhhhhhHHHHHHHHhcc
Confidence             2223457889999999999877655443 333334333       489999999999875 3333333333333 2   


Q ss_pred             cCCCEEEEecCCCCccHHHHHHHHHHHHHHh
Q psy14768        381 YNFMSWIEVSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       381 ~~~~~~~evSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      .++.+++++||++|.||++|++.|.+.+..+
T Consensus       154 ~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         154 IDYSPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             GTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            3455689999999999999999998877654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=4.8e-19  Score=164.63  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=111.1

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEee-------------ecCCeeEEEEEEecCCcchhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK-------------KYGGRPVKLQIWDIAGQDRYICM  308 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~-------------~~~~~~~~l~l~DtaG~e~~~~~  308 (452)
                      -|+|+|++|+|||||+|++++.........+++...........             .++.....+.|+||||++.|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998754332222233222222222110             01334457889999999999888


Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Ccc-------------c----
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQV-------------E----  370 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~-------------~----  370 (452)
                      +...+..+|++|+|+|+.++...+....|.......        +|+|||+||+|+.+ ...             .    
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--------~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQEALNILRMYR--------TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTT--------CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             chhcccccceEEEEEecccCcccchhHHHHHhhcCC--------CeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            888899999999999999988877776665555544        89999999999865 100             0    


Q ss_pred             ---HHHHHH----HHHH-------------cCCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        371 ---INEIEA----VCHQ-------------YNFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       371 ---~e~~~~----~~~~-------------~~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                         .+...+    +...             .+..+++.+||++|.|+++|++.+.....+....
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence               001111    1111             1223579999999999999999988876655443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=7.9e-19  Score=153.23  Aligned_cols=149  Identities=14%  Similarity=0.135  Sum_probs=103.8

Q ss_pred             ccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch--------hh-hhhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR--------YI-CMSR  310 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~--------~~-~~~~  310 (452)
                      +||+++|.+|||||||+|+|++.. ......++++.......+..     ....+.+|||+|...        +. ....
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   75 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-----RGILFRIVDTAGVRSETNDLVERLGIERTL   75 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-----TTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe-----CCeeEEeccccccccCCccHHHHHHHHHHH
Confidence            589999999999999999999754 33455555555554445444     346788999999421        11 1122


Q ss_pred             hhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEEec
Q psy14768        311 VYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       311 ~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      ..+..+|++++|+|++++...++...+...          ...++++++||.|+.+.. ..+++..... .. .++++||
T Consensus        76 ~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~----------~~~~~i~~~~k~d~~~~~-~~~~~~~~~~-~~-~~~~~vS  142 (160)
T d1xzpa2          76 QEIEKADIVLFVLDASSPLDEEDRKILERI----------KNKRYLVVINKVDVVEKI-NEEEIKNKLG-TD-RHMVKIS  142 (160)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----------TTSSEEEEEEECSSCCCC-CHHHHHHHHT-CS-TTEEEEE
T ss_pred             HHHHhCCEEEEEEeCCCCcchhhhhhhhhc----------ccccceeeeeeccccchh-hhHHHHHHhC-CC-CcEEEEE
Confidence            347889999999999998887765543321          237899999999998632 2333222221 22 3489999


Q ss_pred             CCCCccHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~  407 (452)
                      |++|.||++|+++|.+.
T Consensus       143 A~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             GGGTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhc
Confidence            99999999999988653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=3.9e-18  Score=151.35  Aligned_cols=159  Identities=14%  Similarity=0.212  Sum_probs=112.2

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCC
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSD  317 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad  317 (452)
                      ....||+++|++|||||||+++|.++.+... .++.+.....  +.+   +  ...+.+||+.++..+...+..++...+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~--~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEE--LTI---A--GMTFTTFDLGGHIQARRVWKNYLPAIN   82 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE--EEE---T--TEEEEEEEECC----CCGGGGGGGGCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeE--EEe---c--ccccccccccchhhhhhHHhhhhcccc
Confidence            4468999999999999999999998776533 3555444333  333   3  356789999999999888899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc----------------
Q psy14768        318 GCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY----------------  381 (452)
Q Consensus       318 ~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~----------------  381 (452)
                      ++++++|+++...+.....+........   ...++|++|++||.|+.. ....+++.+.....                
T Consensus        83 ~~~~~~d~~d~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~K~D~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1f6ba_          83 GIVFLVDCADHERLLESKEELDSLMTDE---TIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNA  158 (186)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCG---GGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             eeeeeeeccCccchHHHHHHHHHhhccc---ccCCCceEEEEeccCccc-cCCHHHHHHHHhhcccchhhhhhhHHHhhc
Confidence            9999999999998888766444443321   346799999999999874 33344444443221                


Q ss_pred             CCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        382 NFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       382 ~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ....+++|||++|+||+++|+|+++.+
T Consensus       159 ~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         159 RPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            112478999999999999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=5.1e-18  Score=151.36  Aligned_cols=151  Identities=18%  Similarity=0.179  Sum_probs=100.0

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc-----------hhh----
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD-----------RYI----  306 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e-----------~~~----  306 (452)
                      .|+++|.+|||||||+|++++.+...+..++++.+....  ..   .    .+.+|||||..           ...    
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~--~~---~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~   72 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EW---K----NHKIIDMPGFGFMMGLPKEVQERIKDEIV   72 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EE---T----TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccc--cc---c----cceecccCCceeccccccccccccchhhh
Confidence            589999999999999999999777666667666665332  22   2    25688999941           111    


Q ss_pred             hhhhhhhcCCCEEEEEEeCCChhhHHHHH----------HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHH
Q psy14768        307 CMSRVYYQNSDGCIIMFDLTNRKSFESVV----------QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEA  376 (452)
Q Consensus       307 ~~~~~~i~~ad~vIlV~D~t~~~S~~~~~----------~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~  376 (452)
                      ......++.+|++++|+|++.........          .+...+..       .++|+++|+||+|+.+.  ..+....
T Consensus        73 ~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-------~~~p~iiv~NK~D~~~~--~~~~~~~  143 (184)
T d2cxxa1          73 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-------LDIPTIVAVNKLDKIKN--VQEVINF  143 (184)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-------TTCCEEEEEECGGGCSC--HHHHHHH
T ss_pred             hhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-------cCCCEEEEEeeeehhhh--HHHHHHH
Confidence            11233567899999999997643222211          11122222       35899999999998651  1222223


Q ss_pred             HHHHcCC------CEEEEecCCCCccHHHHHHHHHHHHHH
Q psy14768        377 VCHQYNF------MSWIEVSSKEHLMIEDSMNFLVDRIIC  410 (452)
Q Consensus       377 ~~~~~~~------~~~~evSAktg~nv~~lf~~i~~~i~~  410 (452)
                      +.+.+..      ..++++||++|.||+++++++.+.+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         144 LAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            3333322      126889999999999999999887764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=6.7e-18  Score=151.13  Aligned_cols=160  Identities=12%  Similarity=0.076  Sum_probs=100.5

Q ss_pred             ccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh----hhh---hhh
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI----CMS---RVY  312 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~----~~~---~~~  312 (452)
                      ..|+++|++|||||||+|+|++.... ..+.+++. +.......+    .....+++|||||+.+..    .+.   ...
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~-~~~~~~~~~----~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~   76 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTL-VPNLGMVET----DDGRSFVMADLPGLIEGAHQGVGLGHQFLRH   76 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCC-CCCEEEEEC----SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceE-eeeeceeEe----cCCcEEEEecCCCcccCchHHHHHHHHHHHH
Confidence            46999999999999999999985433 33434333 322222222    223457899999964321    111   233


Q ss_pred             hcCCCEEEEEEeCCChhhHHHHH--HHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC-CCEEEEe
Q psy14768        313 YQNSDGCIIMFDLTNRKSFESVV--QWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN-FMSWIEV  389 (452)
Q Consensus       313 i~~ad~vIlV~D~t~~~S~~~~~--~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~-~~~~~ev  389 (452)
                      +..++.++++++...........  .+....... ......++|+++|+||+|+.+.   .+..+.+.+.+. ..+++++
T Consensus        77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kp~ivv~NK~Dl~~~---~~~~~~~~~~~~~~~~v~~i  152 (185)
T d1lnza2          77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE-YNLRLTERPQIIVANKMDMPEA---AENLEAFKEKLTDDYPVFPI  152 (185)
T ss_dssp             HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH-SCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHHCCSCCCBCCC
T ss_pred             HHHhhhhhheeeecccccchhhhhhhhhhhccch-hhhhccCCcchhhccccchHhH---HHHHHHHHHHhccCCcEEEE
Confidence            56789999988876554322222  222222111 0112346899999999999752   233444555542 2347999


Q ss_pred             cCCCCccHHHHHHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFLVDRII  409 (452)
Q Consensus       390 SAktg~nv~~lf~~i~~~i~  409 (452)
                      ||++|.||+++++++.+.+.
T Consensus       153 SA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         153 SAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             SSCCSSTTHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhhh
Confidence            99999999999999988764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.70  E-value=1.1e-17  Score=151.61  Aligned_cols=155  Identities=12%  Similarity=0.097  Sum_probs=114.5

Q ss_pred             cccEEEeeecccCCcceeeecccc----------------ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN----------------KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~----------------~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      .++|+++|..++|||||+++++..                ....+...+++.+.....+.     .....+.++||+|++
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~-----~~~~~~~~iDtPGh~   77 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-----TAARHYAHTDCPGHA   77 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-----CSSCEEEEEECSSHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEE-----eceeeEEeecCcchH
Confidence            478999999999999999998731                11122333455555444443     345678888999999


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc----ccHHHHHHHHH
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ----VEINEIEAVCH  379 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~----~~~e~~~~~~~  379 (452)
                      .|...+...+..+|++|||+|+.++..-|..+.|.......       .+|+|+++||+|+.+..    ....++..++.
T Consensus        78 ~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~-------~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~  150 (196)
T d1d2ea3          78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG-------VEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (196)
T ss_dssp             HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT-------CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhc-------CCcEEEEEecccccccHHHHHHHHHHHHHHHH
Confidence            99988888899999999999999998777776666655544       26899999999997521    12234556666


Q ss_pred             HcCC----CEEEEecCCCC----------ccHHHHHHHHHH
Q psy14768        380 QYNF----MSWIEVSSKEH----------LMIEDSMNFLVD  406 (452)
Q Consensus       380 ~~~~----~~~~evSAktg----------~nv~~lf~~i~~  406 (452)
                      .+++    .+++.+||++|          .++.++|+.+..
T Consensus       151 ~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             HhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            6665    55899999998          588888887654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1.3e-17  Score=154.18  Aligned_cols=163  Identities=13%  Similarity=0.073  Sum_probs=116.1

Q ss_pred             CcccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhhhhcCCCE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDG  318 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~  318 (452)
                      ..+||+++|..|||||||++++..+.    ..||+|.+.  ..+.+     +.+.+.+||++|++.++..|..+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~--~~~~~-----~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~   73 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFE--TKFQV-----DKVNFHMFDVGGQRDERRKWIQCFNDVTA   73 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEE--EEEEE-----TTEEEEEEECCCSTTTTTGGGGGCTTCSE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEE--EEEEE-----CcEEEEEEecCccceeccchhhhcccccc
Confidence            35899999999999999999997544    357888544  33444     45789999999999999999999999999


Q ss_pred             EEEEEeCCChhh-------HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-C----ccc----------------
Q psy14768        319 CIIMFDLTNRKS-------FESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-R----QVE----------------  370 (452)
Q Consensus       319 vIlV~D~t~~~S-------~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~----~~~----------------  370 (452)
                      +++|+|.++...       ...+..+..++...++.....++|++|++||+|+.+ +    ...                
T Consensus        74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~  153 (221)
T d1azta2          74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPED  153 (221)
T ss_dssp             EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTT
T ss_pred             eEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccc
Confidence            999999987532       122333333343333333667899999999999853 0    010                


Q ss_pred             ----------HHHHHHHH-----HHc-------CCCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        371 ----------INEIEAVC-----HQY-------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       371 ----------~e~~~~~~-----~~~-------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                                .+++..+.     +-.       ....+++|||.++.||+.+|..+.+.|++.+
T Consensus       154 ~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         154 ATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             ccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                      12222222     111       1233479999999999999999988887654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.69  E-value=4.7e-17  Score=147.28  Aligned_cols=163  Identities=12%  Similarity=0.091  Sum_probs=108.0

Q ss_pred             CcccEEEeeecccCCcceeeecccc---ccccccCCcceeeeEEEEEEee------------------ecCCeeEEEEEE
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQN---KFLDNYKNTVGVDFSTKLLSHK------------------KYGGRPVKLQIW  297 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~---~~~~~~~~t~~~d~~~~~i~~~------------------~~~~~~~~l~l~  297 (452)
                      ..++|+++|..++|||||+++|++.   ........+++.+.........                  ........+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            3578999999999999999999852   2222222222222211111110                  011234568899


Q ss_pred             ecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHH
Q psy14768        298 DIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEI  374 (452)
Q Consensus       298 DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~  374 (452)
                      ||||++.|.......+..+|++++|+|+.++...+.....+..+...      ...++|++.||+|+.+.   ....+.+
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~------~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII------GQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh------cCccceeeeecccchhhHHHHHHHHHH
Confidence            99999999988888899999999999999875444443333334333      22558889999999872   2223344


Q ss_pred             HHHHHHcCC--CEEEEecCCCCccHHHHHHHHHHH
Q psy14768        375 EAVCHQYNF--MSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       375 ~~~~~~~~~--~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      .++...++.  .+|+.+||++|+||++|++.+...
T Consensus       158 ~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         158 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            455554433  358999999999999999988764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=1.8e-16  Score=142.87  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=94.1

Q ss_pred             ccEEEeeecccCCcceeeeccccccc--cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcch----------hhh-
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFL--DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDR----------YIC-  307 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~--~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~----------~~~-  307 (452)
                      .+|+++|.+|||||||+|+|++....  ....++.+.+......     . .  .+.+.|+.+...          +.. 
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-----~-~--~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-----N-D--ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-----T-T--TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-----c-c--cceEEEEEeeccccccccccchhhhH
Confidence            47999999999999999999986542  2333333333333222     1 1  233456665211          111 


Q ss_pred             --hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHc---C
Q psy14768        308 --MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQY---N  382 (452)
Q Consensus       308 --~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~---~  382 (452)
                        .....+..+|++++|+|++++...++. .++..+...       ++|+++|+||+|+.......+..+.+.+.+   .
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~-~~~~~l~~~-------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~  167 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDV-QMYEFLKYY-------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP  167 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred             Hhhhhccccchhhhhhhhhcccccccccc-ccccccccc-------cCcceechhhccccCHHHHHHHHHHHHHHhcccC
Confidence              112345678999999999887655444 334444433       489999999999876333333334343433   4


Q ss_pred             CCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      ...++.+||++|.|++++|++|.+.+
T Consensus       168 ~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         168 EDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4.5e-16  Score=141.63  Aligned_cols=118  Identities=13%  Similarity=0.198  Sum_probs=88.0

Q ss_pred             cEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-hhhhhhhcCCCEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-CMSRVYYQNSDGCI  320 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-~~~~~~i~~ad~vI  320 (452)
                      +|+++|++|||||||+|+|+++.+... .++++.++....+.    +...+.+.+||++|++.++ ..+..++..+++++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i   76 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN----NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   76 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS----STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe----eeeeeeeeeeeccccccccchhhhhhhhhccccc
Confidence            589999999999999999998777654 36666555443321    4566789999999999886 56678889999999


Q ss_pred             EEEeCCChhhH-HHHHHHHHHH-HhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        321 IMFDLTNRKSF-ESVVQWKHDL-DSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       321 lV~D~t~~~S~-~~~~~~~~~i-~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      +|||+++..++ .+...|+..+ ...  ......+|++||+||+|+..
T Consensus        77 ~v~D~~d~~~~~~~~~~~l~~~l~~~--~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          77 FVVDSAAFQREVKDVAEFLYQVLIDS--MALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHH--HTSTTCCEEEEEEECTTSTT
T ss_pred             eEEEcccccccHHHHHHHHHHHHHhH--HHhhcCCcEEEEEECcccCC
Confidence            99999997764 4444444333 222  11235689999999999975

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=7.2e-16  Score=140.52  Aligned_cols=164  Identities=13%  Similarity=0.124  Sum_probs=101.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccc---cccCCcceeeeE--EEEEEeee---------------------cCCee
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFL---DNYKNTVGVDFS--TKLLSHKK---------------------YGGRP  291 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~---~~~~~t~~~d~~--~~~i~~~~---------------------~~~~~  291 (452)
                      ...++|+++|..++|||||+++|++....   .........+..  ...+....                     .....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            34579999999999999999999852110   000000000110  11110000                     01122


Q ss_pred             EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCc---
Q psy14768        292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQ---  368 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~---  368 (452)
                      ..+.++||+|+..|...+...+..+|++|+|+|+.++......+..+..+...      ...|+||++||+|+.+..   
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~------~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT------TCCCEEEEEECGGGSCHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc------CCceeeeccccCCCccchHHH
Confidence            46889999999999988888889999999999999875323323222223222      225899999999998722   


Q ss_pred             ccHHHHHHHHHHcCC--CEEEEecCCCCccHHHHHHHHHHH
Q psy14768        369 VEINEIEAVCHQYNF--MSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       369 ~~~e~~~~~~~~~~~--~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                      ...++...+......  .+++++||++|.||+++++.+...
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            112233333333322  348999999999999999987764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.2e-16  Score=145.71  Aligned_cols=142  Identities=15%  Similarity=0.111  Sum_probs=103.7

Q ss_pred             cccEEEeeecccCCcceeeecccc------------cccccc-----CCcceeeeEEEEEEeeecCCeeEEEEEEecCCc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN------------KFLDNY-----KNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQ  302 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~------------~~~~~~-----~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~  302 (452)
                      .++|+++|+.++|||||+++|+..            ....+.     ..+++.+.....+.+     ....+.|+||||+
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-----~~~~i~iiDtPGh   77 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-----AKRHYSHVDCPGH   77 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-----SSCEEEEEECCCS
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-----CCeEEEEEeCCCc
Confidence            478999999999999999999621            011111     125566666655555     4456778899999


Q ss_pred             chhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCc-EEEEEECCCCCCCcc----cHHHHHHH
Q psy14768        303 DRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLP-CLLLASKCDLPDRQV----EINEIEAV  377 (452)
Q Consensus       303 e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~p-iilV~NK~Dl~~~~~----~~e~~~~~  377 (452)
                      +.|...+...+..+|++|||+|+.++...|..+.|.......        +| +|+++||||+.+.+.    ..++++.+
T Consensus        78 ~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~g--------i~~iiv~iNK~D~~~~~~~~~~~~~~i~~~  149 (204)
T d2c78a3          78 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG--------VPYIVVFMNKVDMVDDPELLDLVEMEVRDL  149 (204)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTT--------CCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcC--------CCeEEEEEEecccCCCHHHHHHHHHHHHHH
Confidence            999988888999999999999999999999888887776665        55 788899999976221    22344555


Q ss_pred             HHHcCC----CEEEEecCCCC
Q psy14768        378 CHQYNF----MSWIEVSSKEH  394 (452)
Q Consensus       378 ~~~~~~----~~~~evSAktg  394 (452)
                      ....++    .+++.+||..+
T Consensus       150 l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         150 LNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHTTSCTTTSCEEECCHHHH
T ss_pred             HHhcCCCcccceeeeeechhh
Confidence            555443    44788888654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=9.9e-16  Score=135.57  Aligned_cols=153  Identities=14%  Similarity=0.160  Sum_probs=103.7

Q ss_pred             cEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh---------hhhhh
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI---------CMSRV  311 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~---------~~~~~  311 (452)
                      .|+++|.+|||||||+|+|++.... ..+..+++..........     ....+..||++|.....         .....
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-----GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-----TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec-----CCceeEeecCCCceecchhhhhhhhhhcccc
Confidence            4899999999999999999985433 444455544444333333     33456678988854321         11122


Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEec
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVS  390 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evS  390 (452)
                      ....+++++++.|..+...  ....+...+..       ...|+++|+||+|+.. ........+.+..+++..+++++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~-------~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vS  152 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTP--DDEMVLNKLRE-------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  152 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCH--HHHHHHHHHHS-------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             chhhcceeEEEEecCccch--hHHHHHHHhhh-------ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEe
Confidence            3456788888999875432  22223333332       2378999999999876 333455667777888888899999


Q ss_pred             CCCCccHHHHHHHHHHHH
Q psy14768        391 SKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       391 Aktg~nv~~lf~~i~~~i  408 (452)
                      |++|.||++|++.|.+.+
T Consensus       153 A~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         153 AETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTTHHHHHHHHHTTC
T ss_pred             CcCCCCHHHHHHHHHHhC
Confidence            999999999999987765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.51  E-value=2.3e-14  Score=132.02  Aligned_cols=149  Identities=14%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccc---------------------------------cccCCcceeeeEEEEEEe
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFL---------------------------------DNYKNTVGVDFSTKLLSH  284 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~---------------------------------~~~~~t~~~d~~~~~i~~  284 (452)
                      ...++|+++|..++|||||+++|+...-.                                 .+...+.+.+.....+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            34578999999999999999998631100                                 011112233333333322


Q ss_pred             eecCCeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        285 KKYGGRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       285 ~~~~~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                           ....+.|+||||++.|...+...+..+|++|||+|+.++..-|..+.|.......       -+.+|++.||+|+
T Consensus        87 -----~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~g-------v~~iiv~vNK~D~  154 (222)
T d1zunb3          87 -----AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLG-------IKHIVVAINKMDL  154 (222)
T ss_dssp             -----SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTT-------CCEEEEEEECTTT
T ss_pred             -----cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcC-------CCEEEEEEEcccc
Confidence                 3456888999999999988888899999999999999988777766655443333       1348899999999


Q ss_pred             CC-Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHH
Q psy14768        365 PD-RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIE  398 (452)
Q Consensus       365 ~~-~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~  398 (452)
                      .+ .+    ...+++..++...++    .+|+.+||++|+||.
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            87 21    222344556666655    247899999999984

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=5.3e-15  Score=133.97  Aligned_cols=118  Identities=19%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhhhhhh----hhcC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYICMSRV----YYQN  315 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~~~~~----~i~~  315 (452)
                      ...|+++|++|||||||+|+|+++.+.    ++++.+.....+     ......+.+|||+|++.+...+..    .+..
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~-----~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   73 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   73 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEE-----EeCCeEEEEEecccccchhhHHHHHHHHHhhh
Confidence            468999999999999999999987653    455555554444     335556789999999887655433    3556


Q ss_pred             CCEEEEEEeCCC-hhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        316 SDGCIIMFDLTN-RKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       316 ad~vIlV~D~t~-~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      ++.+++++|+.+ ..++.+...|+..+..........++|++||+||+|+..
T Consensus        74 ~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          74 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            789999999764 566677766665443332223567899999999999976

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.7e-14  Score=125.43  Aligned_cols=156  Identities=13%  Similarity=0.039  Sum_probs=85.3

Q ss_pred             CCcccEEEeeecccCCcceeeecccccccc--ccCCcceeeeEEEEEEeeecCCeeEEEEEEecCC-cch-------hhh
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLD--NYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAG-QDR-------YIC  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~--~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG-~e~-------~~~  307 (452)
                      ...++|+++|.+|||||||+|++++.+...  ...+++........ ..    .. ..+...++.+ ...       ...
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~-~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-VA----DG-KRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE-EE----TT-EEEEECCCCC------CCHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeecccee-cc----cc-cceeeeecccccchhhhhhhhhhh
Confidence            346899999999999999999999865432  22222222221111 11    12 2222223322 111       111


Q ss_pred             hh---hhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHHHHHHHHc
Q psy14768        308 MS---RVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEIEAVCHQY  381 (452)
Q Consensus       308 ~~---~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~~~~~~~~  381 (452)
                      ..   .......+.++.+.|.......+... +...+...       ..++++++||+|+.+.   ....+...+....+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~  159 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ-MIEWAVDS-------NIAVLVLLTKADKLASGARKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT-------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhHHHH-HHHHhhhc-------cccccchhhhhhccCHHHHHHHHHHHHHHHHhh
Confidence            11   12234455667777777665555433 33333332       3889999999999872   22222333333333


Q ss_pred             -CCCEEEEecCCCCccHHHHHHHHHHH
Q psy14768        382 -NFMSWIEVSSKEHLMIEDSMNFLVDR  407 (452)
Q Consensus       382 -~~~~~~evSAktg~nv~~lf~~i~~~  407 (452)
                       +..++++|||++|.||++|++.|.+.
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence             34468999999999999999988654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.5e-13  Score=126.32  Aligned_cols=148  Identities=9%  Similarity=0.110  Sum_probs=102.7

Q ss_pred             cccEEEeeecccCCcceeeecccc--c-----------------------------cccccCCcceeeeEEEEEEeeecC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQN--K-----------------------------FLDNYKNTVGVDFSTKLLSHKKYG  288 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~--~-----------------------------~~~~~~~t~~~d~~~~~i~~~~~~  288 (452)
                      .++|+++|..++|||||+.+++-.  .                             ...+...+++.+.....+.+    
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~----   81 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET----   81 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC----
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc----
Confidence            478999999999999999888621  0                             00112235555555555555    


Q ss_pred             CeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhh-------HHHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKS-------FESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       289 ~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S-------~~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                       ....+.|+||||+..|...+...+..+|++|||+|+.++.-       -|..+.|.......       -+++|+++||
T Consensus        82 -~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~g-------v~~iiv~iNK  153 (239)
T d1f60a3          82 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG-------VRQLIVAVNK  153 (239)
T ss_dssp             -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT-------CCEEEEEEEC
T ss_pred             -CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcC-------CCeEEEEEEC
Confidence             45678899999999999988899999999999999997632       23334443333322       1458899999


Q ss_pred             CCCCC-Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHHH
Q psy14768        362 CDLPD-RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIED  399 (452)
Q Consensus       362 ~Dl~~-~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~~  399 (452)
                      +|+.+ .+    ...+++..++...++    .+|+.+||..|.|+-+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            99876 22    122345556666554    3489999999998744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.28  E-value=8.9e-13  Score=121.38  Aligned_cols=151  Identities=12%  Similarity=0.207  Sum_probs=93.2

Q ss_pred             cccEEEeeecccCCcceeeecccccc-------------------------------ccccCCcceeeeEEEEEEeeecC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKF-------------------------------LDNYKNTVGVDFSTKLLSHKKYG  288 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~-------------------------------~~~~~~t~~~d~~~~~i~~~~~~  288 (452)
                      .++|+++|.-++|||||+.+|+...-                               ..+...+++.+.....+     +
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-----~   77 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-----E   77 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-----E
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE-----e
Confidence            47899999999999999988853110                               01111222222222222     3


Q ss_pred             CeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHH---HHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVV---QWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       289 ~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~---~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      ...+.+.|+||||+..|...+...++-+|++|||+|+.++..-+...   +..+.+...   ......++|++.||.|+.
T Consensus        78 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~---~~~~~~~iIv~iNK~D~~  154 (224)
T d1jnya3          78 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA---KTMGLDQLIVAVNKMDLT  154 (224)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH---HHTTCTTCEEEEECGGGS
T ss_pred             cCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH---HHhCCCceEEEEEcccCC
Confidence            45567889999999999999999999999999999999874322211   111111111   011235689999999987


Q ss_pred             C---Cc----ccHHHHHHHHHHcCC----CEEEEecCCCCccHH
Q psy14768        366 D---RQ----VEINEIEAVCHQYNF----MSWIEVSSKEHLMIE  398 (452)
Q Consensus       366 ~---~~----~~~e~~~~~~~~~~~----~~~~evSAktg~nv~  398 (452)
                      .   .+    ...+++..+...+++    .+|+.+||.+|.||-
T Consensus       155 ~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         155 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             CccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            4   11    112234445555443    347899999999984

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.28  E-value=1.3e-11  Score=116.03  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             cEEEeeecccCCcceeeeccccccc------cc------------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFL------DN------------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~------~~------------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      +|+++|..++|||||+.+++...-.      ..            ...+++.+.....+.+     +...+.|+||||+.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-----~~~~~n~iDtPGh~   78 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-----RGHRVFLLDAPGYG   78 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-----TTEEEEEEECCCSG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-----cccceeEEccCchh
Confidence            5899999999999999988631100      00            0112233333344444     45678899999999


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      .|.......++.+|++|+|+|+.++..-+..+.|.......        +|.++++||+|..
T Consensus        79 dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~--------~p~~i~iNk~D~~  132 (267)
T d2dy1a2          79 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG--------LPRMVVVTKLDKG  132 (267)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT--------CCEEEEEECGGGC
T ss_pred             hhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcc--------ccccccccccccc
Confidence            99988889999999999999999999888888887766665        9999999999963

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.25  E-value=2.4e-12  Score=120.02  Aligned_cols=151  Identities=10%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-------------------------------cccCCcceeeeEEEEEEeeecC
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-------------------------------DNYKNTVGVDFSTKLLSHKKYG  288 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-------------------------------~~~~~t~~~d~~~~~i~~~~~~  288 (452)
                      .++|+++|..++|||||+.+|+...-.                               .....+++.+.....+     .
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-----~   98 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF-----E   98 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE-----E
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccc-----c
Confidence            467999999999999999998521000                               0001111212212222     2


Q ss_pred             CeeEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhH-------HHHHHHHHHHHhhhhhcCCCCCcEEEEEEC
Q psy14768        289 GRPVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSF-------ESVVQWKHDLDSKCILDNGAMLPCLLLASK  361 (452)
Q Consensus       289 ~~~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~-------~~~~~~~~~i~~~~~~~~~~~~piilV~NK  361 (452)
                      .....+.++||||+..|...+......+|++|+|+|+.++.--       |..+.+. .+...      .-..+++++||
T Consensus        99 ~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-l~~~~------~i~~iiv~iNK  171 (245)
T d1r5ba3          99 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQ------GINHLVVVINK  171 (245)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHT------TCSSEEEEEEC
T ss_pred             cccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHH-HHHHc------CCCeEEEEEEc
Confidence            3446788999999999998888889999999999999986422       2222222 12211      12348899999


Q ss_pred             CCCCC---CcccH----HHHHHHHHHc-CC-----CEEEEecCCCCccHHHHHH
Q psy14768        362 CDLPD---RQVEI----NEIEAVCHQY-NF-----MSWIEVSSKEHLMIEDSMN  402 (452)
Q Consensus       362 ~Dl~~---~~~~~----e~~~~~~~~~-~~-----~~~~evSAktg~nv~~lf~  402 (452)
                      +|+..   .+...    +++..+..++ ++     .+|+.+||++|+||.++++
T Consensus       172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            99864   11112    2233333333 22     3589999999999977644

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=2.6e-11  Score=114.36  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=93.5

Q ss_pred             cEEEeeecccCCcceeeeccccccccc------------------cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNKFLDN------------------YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~~~~~------------------~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      +|+++|..++|||||+.+++...-...                  ...+++.......+.     .+...+.|+||||+.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~-----~~~~~~n~iDtPG~~   82 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-----WKDHRINIIDAPGHV   82 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEE-----ETTEEEEEECCCSSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeec-----cCCeEEEEecCCchh
Confidence            599999999999999999873111100                  011122222223333     355778899999999


Q ss_pred             hhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC
Q psy14768        304 RYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF  383 (452)
Q Consensus       304 ~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~  383 (452)
                      .|.......++.+|++|+|+|+.++..-+....|...-...        +|.|+++||+|... ....+-+.++.+.++.
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~--------lP~i~fINKmDr~~-ad~~~~l~ei~~~l~~  153 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK--------VPRIAFANKMDKTG-ADLWLVIRTMQERLGA  153 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTT--------CCEEEEEECTTSTT-CCHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcC--------CCEEEEEecccccc-cccchhHHHHHHHhCC
Confidence            99988889999999999999999999888888887665554        99999999999864 2334456666666655


Q ss_pred             C
Q psy14768        384 M  384 (452)
Q Consensus       384 ~  384 (452)
                      .
T Consensus       154 ~  154 (276)
T d2bv3a2         154 R  154 (276)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2.1e-11  Score=121.57  Aligned_cols=160  Identities=14%  Similarity=0.165  Sum_probs=93.7

Q ss_pred             CCcccEEEeeecccCCcceeeeccccccccccCC-----cceeeeEEEEEEeeecCCeeEEEEEEecCCcchhhh-----
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQNKFLDNYKN-----TVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYIC-----  307 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~-----t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~~-----  307 (452)
                      ..+++|+|+|.+|||||||+|.+++.........     .++.+....  ..    ...-.+.||||||......     
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~----~~~~~~~l~DtPG~~~~~~~~~~~  127 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KH----PNIPNVVFWDLPGIGSTNFPPDTY  127 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--EC----SSCTTEEEEECCCGGGSSCCHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--ec----cCCCeEEEEeCCCcccccccHHHH
Confidence            3468999999999999999999997443222211     122222221  11    1222367999999754321     


Q ss_pred             hhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC--------CcccHH----HH-
Q psy14768        308 MSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD--------RQVEIN----EI-  374 (452)
Q Consensus       308 ~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~--------~~~~~e----~~-  374 (452)
                      +....+..+|++|++.|..  .+.++...+ ..+...       ++|+++|.||+|...        .....+    ++ 
T Consensus       128 ~~~~~~~~~d~~l~~~~~~--~~~~d~~l~-~~l~~~-------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir  197 (400)
T d1tq4a_         128 LEKMKFYEYDFFIIISATR--FKKNDIDIA-KAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR  197 (400)
T ss_dssp             HHHTTGGGCSEEEEEESSC--CCHHHHHHH-HHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             HHHhhhhcceEEEEecCCC--CCHHHHHHH-HHHHHc-------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHH
Confidence            2233467789888887743  344554333 333332       489999999999631        111111    11 


Q ss_pred             ---HHHHHHcCC--CEEEEecCCC--CccHHHHHHHHHHHHHHhhh
Q psy14768        375 ---EAVCHQYNF--MSWIEVSSKE--HLMIEDSMNFLVDRIICSKR  413 (452)
Q Consensus       375 ---~~~~~~~~~--~~~~evSAkt--g~nv~~lf~~i~~~i~~~~~  413 (452)
                         .......+.  .++|.+|..+  ..++.++.+.+.+.+-..++
T Consensus       198 ~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         198 LNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             HHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence               222333332  3468888765  45889998888777655443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=1.8e-10  Score=111.81  Aligned_cols=116  Identities=13%  Similarity=0.256  Sum_probs=85.5

Q ss_pred             cEEEeeecccCCcceeeeccccc-ccc---------------ccCCcceeeeEEEEEEee-----------ecCCeeEEE
Q psy14768        242 PILITGDSTVGKTSYVQGFVQNK-FLD---------------NYKNTVGVDFSTKLLSHK-----------KYGGRPVKL  294 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~~~-~~~---------------~~~~t~~~d~~~~~i~~~-----------~~~~~~~~l  294 (452)
                      +|+|+|..++|||||+.+++... .+.               +...+++.......+.+.           ..+++.+.+
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i   98 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI   98 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence            49999999999999999987311 110               111122222222222110           013456789


Q ss_pred             EEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCC
Q psy14768        295 QIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLP  365 (452)
Q Consensus       295 ~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~  365 (452)
                      .|+||||+..|.......++-+|++|+|+|+.++...+..+.|...+...        +|++||+||+|..
T Consensus        99 nliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~--------~p~i~viNKiDr~  161 (341)
T d1n0ua2          99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGER--------IKPVVVINKVDRA  161 (341)
T ss_dssp             EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTT--------CEEEEEEECHHHH
T ss_pred             EEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcC--------CCeEEEEECcccc
Confidence            99999999999988888999999999999999999999988888877766        9999999999964

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.02  E-value=4.4e-10  Score=105.18  Aligned_cols=122  Identities=15%  Similarity=0.117  Sum_probs=77.1

Q ss_pred             CCCcccEEEeeecccCCcceeeeccccc-cccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcchhh-------hh
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQNK-FLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQDRYI-------CM  308 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~~-~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e~~~-------~~  308 (452)
                      ....++|+++|.+|+|||||+|.++++. +..+..+.++.+........   ++  ..+.+|||||.....       ..
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~---~g--~~i~viDTPGl~~~~~~~~~~~~~  103 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR---AG--FTLNIIDTPGLIEGGYINDMALNI  103 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE---TT--EEEEEEECCCSEETTEECHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEe---cc--EEEEEEeeecccCCcchHHHHHHH
Confidence            3456899999999999999999999854 44454555555555555555   44  568899999954211       11


Q ss_pred             hhh--hhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        309 SRV--YYQNSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       309 ~~~--~i~~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      ...  .....|+++||++++.. .+.++.. .+..+...++  .....++|||+||+|...
T Consensus       104 i~~~~~~~~~~~il~v~~~~~~r~~~~~~~-~l~~l~~~fg--~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         104 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKL-VAKAITDSFG--KGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             HHHHTTTCEECEEEEEEESSCCCCCHHHHH-HHHHHHHHHC--GGGGGGEEEEEECCSCCC
T ss_pred             HHHHHhcCCCCeEEEEEECCCCCCCHHHHH-HHHHHHHHcc--hhhhhCEEEEEECcccCC
Confidence            111  13456899999998764 2333322 2223332211  011257899999999876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.81  E-value=1.1e-09  Score=100.36  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             EEEEEEecCCcchhhhhhhh---h--hcCCCEEEEEEeCCChhh---HHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        292 VKLQIWDIAGQDRYICMSRV---Y--YQNSDGCIIMFDLTNRKS---FESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~---~--i~~ad~vIlV~D~t~~~S---~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                      ..+.++|++|+..+...+..   .  ....+++++++|+.....   +.........+...      -..|.++|+||+|
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~------~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR------LGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH------HTSCEEEEECCGG
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH------hCCCceeeeeccc
Confidence            45788899999765433322   2  224678999999865433   22222222211111      2489999999999


Q ss_pred             CCC-Cccc--------HHHHH------------------HHH-HHcCCCEEEEecCCCCccHHHHHHHHHHHH
Q psy14768        364 LPD-RQVE--------INEIE------------------AVC-HQYNFMSWIEVSSKEHLMIEDSMNFLVDRI  408 (452)
Q Consensus       364 l~~-~~~~--------~e~~~------------------~~~-~~~~~~~~~evSAktg~nv~~lf~~i~~~i  408 (452)
                      +.. .+..        .....                  ... +..+..+++.+||++|+|+++++..|.+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         169 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            875 1100        00000                  011 112344589999999999999999887753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=6.9e-09  Score=100.02  Aligned_cols=89  Identities=12%  Similarity=0.047  Sum_probs=54.0

Q ss_pred             hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCC---cccHHHHHHHHHHc------C
Q psy14768        312 YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDR---QVEINEIEAVCHQY------N  382 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~e~~~~~~~~~------~  382 (452)
                      +...+|.+++|.+...+...+.+..-+.+            .+=++|+||+|+...   .....+.......+      .
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e------------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w  231 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLME------------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEW  231 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHH------------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTB
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhc------------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCC
Confidence            55679999999988777655554443322            234788999998751   11122222222222      1


Q ss_pred             CCEEEEecCCCCccHHHHHHHHHHHHHHhh
Q psy14768        383 FMSWIEVSSKEHLMIEDSMNFLVDRIICSK  412 (452)
Q Consensus       383 ~~~~~evSAktg~nv~~lf~~i~~~i~~~~  412 (452)
                      .++.+.|||++|.||+++++.|.+......
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~  261 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFKTALT  261 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence            245899999999999999999987665443

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.58  E-value=3.3e-08  Score=95.07  Aligned_cols=108  Identities=7%  Similarity=0.009  Sum_probs=63.3

Q ss_pred             EEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCC-Cccc
Q psy14768        292 VKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPD-RQVE  370 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~-~~~~  370 (452)
                      +.+.|+.|.|.-.   .-.....-+|.+++|.....+...|.+..-+.+            .+=++|+||+|+.+ ....
T Consensus       144 ~d~iiiETVG~gq---~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE------------~aDi~vvNKaD~~~~~~~~  208 (323)
T d2qm8a1         144 FDVILVETVGVGQ---SETAVADLTDFFLVLMLPGAGDELQGIKKGIFE------------LADMIAVNKADDGDGERRA  208 (323)
T ss_dssp             CCEEEEEECSSSS---CHHHHHTTSSEEEEEECSCC------CCTTHHH------------HCSEEEEECCSTTCCHHHH
T ss_pred             CCeEEEeehhhhh---hhhhhhcccceEEEEeeccchhhhhhhhhhHhh------------hhheeeEeccccccchHHH
Confidence            4566667765311   112234569999999999987655554332221            33488999999876 2212


Q ss_pred             HHHHHHHHHHc---------CCCEEEEecCCCCccHHHHHHHHHHHHHHhhhh
Q psy14768        371 INEIEAVCHQY---------NFMSWIEVSSKEHLMIEDSMNFLVDRIICSKRM  414 (452)
Q Consensus       371 ~e~~~~~~~~~---------~~~~~~evSAktg~nv~~lf~~i~~~i~~~~~~  414 (452)
                      ......+...+         ...+++.|||++|.|+++++++|.+........
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~  261 (323)
T d2qm8a1         209 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTAT  261 (323)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHC
Confidence            22222222221         224589999999999999999998776655443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.55  E-value=8.9e-08  Score=90.06  Aligned_cols=87  Identities=13%  Similarity=0.088  Sum_probs=51.9

Q ss_pred             cccEEEeeecccCCcceeeeccccccccccCCcceeeeEEEEEEeee---------cCCee---EEEEEEecCCcchh--
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKK---------YGGRP---VKLQIWDIAGQDRY--  305 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~~~~i~~~~---------~~~~~---~~l~l~DtaG~e~~--  305 (452)
                      .+||.+||.||||||||+|++.+...-....|.++.+...-.+.++.         ++.++   ..+.++|+||.-.-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            47999999999999999999997554433334443322211222210         11122   25778899995321  


Q ss_pred             --hhhh---hhhhcCCCEEEEEEeCC
Q psy14768        306 --ICMS---RVYYQNSDGCIIMFDLT  326 (452)
Q Consensus       306 --~~~~---~~~i~~ad~vIlV~D~t  326 (452)
                        ..+.   -.-++++|++|.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              1222   23488999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.54  E-value=1.2e-07  Score=89.89  Aligned_cols=89  Identities=16%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             CcccEEEeeecccCCcceeeecccccc-ccccCCcceeeeEEEEEEeee---------cC---CeeEEEEEEecCCcchh
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQNKF-LDNYKNTVGVDFSTKLLSHKK---------YG---GRPVKLQIWDIAGQDRY  305 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~~~~~t~~~d~~~~~i~~~~---------~~---~~~~~l~l~DtaG~e~~  305 (452)
                      ..+||.|+|.||||||||+|++++... .....|.+|.+...-.+.++.         +.   .....+.++|.||.-.-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            358999999999999999999997543 344446665544333333310         00   01246788999984321


Q ss_pred             ----h---hhhhhhhcCCCEEEEEEeCCC
Q psy14768        306 ----I---CMSRVYYQNSDGCIIMFDLTN  327 (452)
Q Consensus       306 ----~---~~~~~~i~~ad~vIlV~D~t~  327 (452)
                          .   ...-.-++++|++|.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                1   112334789999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.5e-08  Score=82.99  Aligned_cols=39  Identities=36%  Similarity=0.627  Sum_probs=34.9

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      +.+||+|||++|||||||++||+++.|...+.+|++.++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~   41 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF   41 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc
Confidence            357999999999999999999999999988889887665

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.1e-08  Score=84.80  Aligned_cols=45  Identities=40%  Similarity=0.623  Sum_probs=40.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +.+||+|||++|||||||++||++++|...+.+|++.++..+.+.
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~   46 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN   46 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeec
Confidence            579999999999999999999999999999999998888776644

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=6.8e-08  Score=85.65  Aligned_cols=48  Identities=33%  Similarity=0.691  Sum_probs=42.7

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      .+++++||+|||++|||||||++||+++.|...+.+|++..+..+.+.
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~   49 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE   49 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEE
Confidence            467889999999999999999999999999999999998887765543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-07  Score=82.15  Aligned_cols=42  Identities=38%  Similarity=0.734  Sum_probs=33.1

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCC-CCcCccccCce
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLD-NYKNTVGVDFS  146 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~-~~~~~~~~~~~  146 (452)
                      ++.++||++||++|||||||++||+++.|.. .+.++++.++.
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~   45 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR   45 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeE
Confidence            5678999999999999999999999998863 34444544443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=6.7e-08  Score=92.59  Aligned_cols=87  Identities=14%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             ccEEEeeecccCCcceeeeccccccccccCCcceeeeE--EEE-EEeee----------------cCCeeEEEEEEecCC
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS--TKL-LSHKK----------------YGGRPVKLQIWDIAG  301 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~~~~~~~~~t~~~d~~--~~~-i~~~~----------------~~~~~~~l~l~DtaG  301 (452)
                      ++|+++|.||||||||+|++.+.+......|.+|.+..  ... +.-..                .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999986555554454443321  110 00000                011235788999999


Q ss_pred             cchhh----hhhh---hhhcCCCEEEEEEeCCC
Q psy14768        302 QDRYI----CMSR---VYYQNSDGCIIMFDLTN  327 (452)
Q Consensus       302 ~e~~~----~~~~---~~i~~ad~vIlV~D~t~  327 (452)
                      .-...    .+..   ..++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            53211    1112   24678999999999864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=5.7e-08  Score=84.08  Aligned_cols=47  Identities=38%  Similarity=0.721  Sum_probs=41.9

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +++++||++||++|||||||++||+++.|...+.+++|.++..+.+.
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~   48 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY   48 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEE
Confidence            57889999999999999999999999999989999998887765544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=4.2e-08  Score=85.30  Aligned_cols=46  Identities=35%  Similarity=0.671  Sum_probs=24.2

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      .++++||++||++|||||||++||+++.|...+.+|++.++..+.+
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~   48 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI   48 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEE
Confidence            4678999999999999999999999999988888888777665443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=6.8e-08  Score=83.26  Aligned_cols=46  Identities=33%  Similarity=0.743  Sum_probs=41.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++++||+|||++|||||||++||++++|..++.++.+.++....+.
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE   47 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEE
Confidence            6789999999999999999999999999999999988887765544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.8e-08  Score=84.15  Aligned_cols=47  Identities=38%  Similarity=0.596  Sum_probs=42.0

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +++++||++||++|||||||++||+++.|...+.++++.++..+.+.
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~   48 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE   48 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEE
Confidence            56789999999999999999999999999989999998888766543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=6.5e-08  Score=83.21  Aligned_cols=43  Identities=37%  Similarity=0.794  Sum_probs=39.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +||++||++|||||||++||+++.|..++.+|++.++......
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~   45 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ   45 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeee
Confidence            7999999999999999999999999999999999888766544

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=6.2e-08  Score=83.43  Aligned_cols=45  Identities=42%  Similarity=0.764  Sum_probs=34.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ++||++||++|||||||++||++++|...+.+|++.++....+..
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~   46 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI   46 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEE
Confidence            689999999999999999999999999999999999998777653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.1e-08  Score=83.85  Aligned_cols=41  Identities=24%  Similarity=0.540  Sum_probs=37.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      +||++||++|||||||++||+++.|..+|.||++.+|....
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~   43 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA   43 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccc
Confidence            79999999999999999999999999999999998876543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=7.3e-08  Score=84.53  Aligned_cols=44  Identities=48%  Similarity=0.828  Sum_probs=39.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++||++||++|||||||++||++++|..++.+|+|.++..+...
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~   45 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM   45 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeee
Confidence            68999999999999999999999999999999998888766543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.6e-08  Score=84.03  Aligned_cols=48  Identities=35%  Similarity=0.639  Sum_probs=38.1

Q ss_pred             CcccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        104 DAETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       104 ~~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++..++||++||++|||||||++||++++|...+.+|++..+..+.+.
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~   49 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE   49 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeee
Confidence            456789999999999999999999999999999999998877665544

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.5e-08  Score=84.33  Aligned_cols=37  Identities=35%  Similarity=0.594  Sum_probs=34.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      ..++||+|||++|||||||++||+++.|..++.+|++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~   43 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF   43 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee
Confidence            4569999999999999999999999999988999985

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=8e-08  Score=83.05  Aligned_cols=45  Identities=36%  Similarity=0.648  Sum_probs=40.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      .+||++||++|||||||++||++++|...+.+|+|.++..+.+..
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~   47 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI   47 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccc
Confidence            589999999999999999999999999999999998887766543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.42  E-value=8.1e-08  Score=83.11  Aligned_cols=40  Identities=23%  Similarity=0.582  Sum_probs=36.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .++||++||++|||||||++||++++|..+|.+|++.++.
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~   42 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR   42 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc
Confidence            3689999999999999999999999999999999987664

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.2e-07  Score=82.55  Aligned_cols=46  Identities=37%  Similarity=0.700  Sum_probs=37.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ++++||++||++|||||||++||.+++|...+.++.+.+.....+.
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ   47 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEE
Confidence            6789999999999999999999999999988888887666555443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.3e-07  Score=82.03  Aligned_cols=46  Identities=35%  Similarity=0.751  Sum_probs=40.1

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +++++||++||++|||||||++||+.++|...+.++.+.+.....+
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~   47 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII   47 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEE
Confidence            5788999999999999999999999999998999998776655443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-07  Score=82.00  Aligned_cols=41  Identities=29%  Similarity=0.570  Sum_probs=36.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +.+||++||++|||||||++||+++.|..++.+|++.++..
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~   42 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK   42 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccce
Confidence            35899999999999999999999999999999999866643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.6e-07  Score=82.15  Aligned_cols=38  Identities=34%  Similarity=0.533  Sum_probs=34.6

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      +.+||+|||++|||||||++||+++.|..++.+|++..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~   41 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN   41 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec
Confidence            45899999999999999999999999999999998743

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.7e-08  Score=84.11  Aligned_cols=47  Identities=38%  Similarity=0.704  Sum_probs=41.9

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +++++||+|||++|||||||++||++++|...+.++.+.++..+.+.
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~   48 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVV   48 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEE
Confidence            57889999999999999999999999999989999988887765544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.5e-07  Score=81.63  Aligned_cols=45  Identities=29%  Similarity=0.620  Sum_probs=34.5

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +++||++||++|||||||++||++++|...+.++.+.+.......
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~   46 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN   46 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeee
Confidence            579999999999999999999999999988888887776655443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.5e-07  Score=81.63  Aligned_cols=36  Identities=31%  Similarity=0.625  Sum_probs=31.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCcc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTV  141 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~  141 (452)
                      ...+||+|||++|||||||++||+++.|...+.+|.
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~   39 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI   39 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc
Confidence            346899999999999999999999999886666664

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2.4e-07  Score=79.38  Aligned_cols=45  Identities=42%  Similarity=0.732  Sum_probs=39.8

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +++||++||++|||||||++||++++|...+.++.+..+..+.+.
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD   45 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeee
Confidence            368999999999999999999999999999999998888765543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2.1e-07  Score=80.07  Aligned_cols=45  Identities=38%  Similarity=0.605  Sum_probs=39.1

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      +-+||+|||++|||||||++||++++|...+.+|++..+....+.
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~   47 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ   47 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccc
Confidence            458999999999999999999999999999999998777655433

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.8e-07  Score=80.84  Aligned_cols=39  Identities=33%  Similarity=0.531  Sum_probs=35.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||++||++|||||||++||+++.|...+.+|++..+.
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~   40 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR   40 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc
Confidence            379999999999999999999999999999999975543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.8e-07  Score=79.22  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      .||+|||++|||||||++||+++.|...+.+|++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~   36 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF   36 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee
Confidence            6899999999999999999999999988888875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2e-07  Score=80.22  Aligned_cols=41  Identities=29%  Similarity=0.600  Sum_probs=36.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK  148 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~  148 (452)
                      -+||++||++|||||||++||+++.|...+.++++.++...
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~   43 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ   43 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc
Confidence            38999999999999999999999999999999998766543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=3.1e-07  Score=79.44  Aligned_cols=43  Identities=47%  Similarity=0.858  Sum_probs=35.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      ++||++||++|||||||++||+++.|...+.+|.+........
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~   44 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEV   44 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeee
Confidence            6899999999999999999999999998888888777665443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=7.3e-07  Score=84.16  Aligned_cols=120  Identities=17%  Similarity=0.241  Sum_probs=73.0

Q ss_pred             cccEEEeeecccCCcceeeeccccccc-cccCCcceeeeEEEEEE-------e---------------------------
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS-------H---------------------------  284 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~-~~~~~t~~~d~~~~~i~-------~---------------------------  284 (452)
                      ..+|+|+|..++|||||+|.+++..+. ....+++..-.......       +                           
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            457999999999999999999997764 33334332111100000       0                           


Q ss_pred             ------------eecCCeeEEEEEEecCCcch-------------hhhhhhhhhcCCC-EEEEEEeCCChhhHHHHHHHH
Q psy14768        285 ------------KKYGGRPVKLQIWDIAGQDR-------------YICMSRVYYQNSD-GCIIMFDLTNRKSFESVVQWK  338 (452)
Q Consensus       285 ------------~~~~~~~~~l~l~DtaG~e~-------------~~~~~~~~i~~ad-~vIlV~D~t~~~S~~~~~~~~  338 (452)
                                  .........+.|+||||...             ...+...|+.+.+ ++++|.+++...+-+....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                        00000112377899999422             1233455677776 556677777666655555555


Q ss_pred             HHHHhhhhhcCCCCCcEEEEEECCCCCC
Q psy14768        339 HDLDSKCILDNGAMLPCLLLASKCDLPD  366 (452)
Q Consensus       339 ~~i~~~~~~~~~~~~piilV~NK~Dl~~  366 (452)
                      ..+...       ..++++|+||+|+.+
T Consensus       186 ~~~~~~-------~~r~i~Vltk~D~~~  206 (299)
T d2akab1         186 KEVDPQ-------GQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHCTT-------CSSEEEEEECGGGSC
T ss_pred             HHhCcC-------CCceeeEEecccccc
Confidence            555433       468999999999876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-07  Score=79.50  Aligned_cols=42  Identities=36%  Similarity=0.783  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLL  150 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~  150 (452)
                      +||++||++|||||||++||++++|..++.++++.+......
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~   42 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM   42 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceee
Confidence            599999999999999999999999999999998777665443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-07  Score=79.87  Aligned_cols=36  Identities=31%  Similarity=0.633  Sum_probs=33.3

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      +.+||++||++|||||||++||+++.|...+.+|++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~   37 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE   37 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee
Confidence            358999999999999999999999999988888886

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.2e-07  Score=79.15  Aligned_cols=47  Identities=32%  Similarity=0.554  Sum_probs=40.7

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeec
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSH  152 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (452)
                      ...+||++||++|||||||++||++++|...+.+|.+.++....+..
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~   50 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL   50 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeec
Confidence            44689999999999999999999999999999999988876655443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.22  E-value=6.1e-07  Score=85.09  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             EEEEEecCCcch-------------hhhhhhhhhcCCCEEEEEE-eCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEE
Q psy14768        293 KLQIWDIAGQDR-------------YICMSRVYYQNSDGCIIMF-DLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL  358 (452)
Q Consensus       293 ~l~l~DtaG~e~-------------~~~~~~~~i~~ad~vIlV~-D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV  358 (452)
                      .+.|+||||...             ...+...|+.+++.+|+++ ++.....-+....+...+.       .....+++|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~-------~~~~r~i~V  204 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-------PEGKRTIGV  204 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-------SSCSSEEEE
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC-------cCCCeEEEE
Confidence            467999999532             1244566889999876665 4443333333333444433       234689999


Q ss_pred             EECCCCCC
Q psy14768        359 ASKCDLPD  366 (452)
Q Consensus       359 ~NK~Dl~~  366 (452)
                      +||+|..+
T Consensus       205 itk~D~~~  212 (306)
T d1jwyb_         205 ITKLDLMD  212 (306)
T ss_dssp             EECTTSSC
T ss_pred             Eecccccc
Confidence            99999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=4.3e-07  Score=79.73  Aligned_cols=40  Identities=20%  Similarity=0.203  Sum_probs=35.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      -+||++||++|||||||++||+...|  .+.||+|+++....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~~   41 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPFD   41 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEEe
Confidence            48999999999999999999999888  48899998876543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.19  E-value=5.8e-07  Score=77.02  Aligned_cols=39  Identities=23%  Similarity=0.473  Sum_probs=36.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +||+++|++|||||||++||..+.|...+.+|+|.++..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~   41 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK   41 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee
Confidence            799999999999999999999999998999999877654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=8.6e-07  Score=75.29  Aligned_cols=39  Identities=15%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCcee
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFST  147 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~  147 (452)
                      +||++||++|||||||+|++++.++. ..+.++..++...
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~   41 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR   41 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEe
Confidence            79999999999999999999988766 3444554444433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=5.4e-08  Score=91.38  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=35.4

Q ss_pred             CCCcccEEEeeecccCCcceeeecccc-ccccccCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        237 QIPTYPILITGDSTVGKTSYVQGFVQN-KFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       237 ~~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~~~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      ....++++|+|.||||||||+|++.+. ...+...|+++.+......      +.  .+.++||||.-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~------~~--~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV------GK--ELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE------TT--TEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC------CC--CeEEecCCCcc
Confidence            345688999999999999999999984 4567777888876543321      22  26788999963

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.7e-07  Score=78.14  Aligned_cols=34  Identities=29%  Similarity=0.662  Sum_probs=32.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      +||+|||++|||||||++||+++.|..++.+|.+
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~   39 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE   39 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc
Confidence            8999999999999999999999999988888875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=1.3e-06  Score=75.71  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=29.2

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCce
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFS  146 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~  146 (452)
                      +.-+|+|||.+|||||||+|++++.+.. ....++...+..
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~   44 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL   44 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccc
Confidence            4457999999999999999999998765 333343333333

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=3.1e-07  Score=80.99  Aligned_cols=37  Identities=22%  Similarity=0.515  Sum_probs=32.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      ++||++||++|||||||++||   +|...+.||+|+++..
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~   38 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD   38 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEE
Confidence            589999999999999999999   4667889999976544

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=3.3e-07  Score=77.88  Aligned_cols=26  Identities=19%  Similarity=0.570  Sum_probs=23.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +||+++|++|||||||+|++++++..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~   26 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRA   26 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce
Confidence            58999999999999999999987655

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.6e-07  Score=76.37  Aligned_cols=45  Identities=24%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC-CCCcCccccCceeeeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL-DNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~-~~~~~~~~~~~~~~~~~  151 (452)
                      +.+||++||++|||||||++||++..+. ..+.++.|.++..+.+.
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~   47 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM   47 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeec
Confidence            4589999999999999999999998877 45667788887766544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=6.5e-07  Score=75.44  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      ||++||++|||||||+|||+++.|+ .+.+|++....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~   37 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE   37 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE
Confidence            7999999999999999999999886 56777765443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.2e-06  Score=76.11  Aligned_cols=46  Identities=46%  Similarity=0.692  Sum_probs=39.2

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLS  151 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  151 (452)
                      ...+||++||++|||||||++||++++|..++.++.+.++..+.+.
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~   50 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS   50 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEE
Confidence            3458999999999999999999999999988888887777665543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1e-06  Score=76.03  Aligned_cols=84  Identities=21%  Similarity=0.444  Sum_probs=57.6

Q ss_pred             ceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec-----cccCCCCCCCcccEE
Q psy14768        170 SYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI-----YCTLSPIQIPTYPIL  244 (452)
Q Consensus       170 ~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~-----~~~l~~~~~~~~kI~  244 (452)
                      .|||+++||.+||||+|+.+|..+.|...+.++++.++....+   ..++..+.+.+||+     +..+..........+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~---~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   79 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF---HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   79 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEE---CBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccc---ccccccccccccccccccccceecchhcccccch
Confidence            4799999999999999999999999999999999998887766   35688899999998     233333334444444


Q ss_pred             EeeecccCCcce
Q psy14768        245 ITGDSTVGKTSY  256 (452)
Q Consensus       245 ivG~~nvGKSSL  256 (452)
                      ++=-.-.-+.|+
T Consensus        80 ilv~d~~~~~Sf   91 (170)
T d1i2ma_          80 IIMFDVTSRVTY   91 (170)
T ss_dssp             EEEEETTSGGGG
T ss_pred             hhcccccccccc
Confidence            444433334444

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1e-06  Score=75.95  Aligned_cols=38  Identities=32%  Similarity=0.628  Sum_probs=34.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      .+||++||++|||||||++||+++.|...+.+|++..+
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~   41 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY   41 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc
Confidence            48999999999999999999999999988999987554

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.6e-06  Score=76.20  Aligned_cols=57  Identities=30%  Similarity=0.549  Sum_probs=47.6

Q ss_pred             CceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        169 PSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       169 ~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      ..+||++|||.+||||+|+.||+.+.|..++.+++...+....    .+++..+.+.+||+
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~----~~~~~~~~l~i~D~   58 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV----MIGGEPYTLGLFDT   58 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEE----EETTEEEEEEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeE----eeCCceeeeecccc
Confidence            4589999999999999999999999999999999886543333    24577888999998

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.05  E-value=1.6e-06  Score=73.55  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVG  142 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~  142 (452)
                      .+||+|||++|||||||+|||+++.|. ...++.+
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~-~~~~~~~   38 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG   38 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-ceecccc
Confidence            389999999999999999999999887 3344544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.03  E-value=1.3e-06  Score=73.55  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYK  138 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~  138 (452)
                      +||+|||++|||||||+|||+++.|...+.
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~   30 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP   30 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc
Confidence            589999999999999999999998874433

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.03  E-value=1e-06  Score=76.11  Aligned_cols=40  Identities=20%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+.+||++||++|||||||+|||.++.|. .+.+++|.++.
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~   53 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIK   53 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEE
Confidence            34589999999999999999999999886 44455655443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.1e-06  Score=75.54  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDF  145 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~  145 (452)
                      ++||++||++|||||||++||.+..+. .+.++++..+
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~   37 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY   37 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeee
Confidence            489999999999999999999998775 3444544444

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.99  E-value=2e-06  Score=74.80  Aligned_cols=42  Identities=26%  Similarity=0.392  Sum_probs=33.7

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKL  149 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~  149 (452)
                      +.+||++||++|||||||++||.++.+. ...+|.|.......
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~   57 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLS   57 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEe
Confidence            3589999999999999999999988876 45577776654433

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.97  E-value=2.6e-06  Score=72.66  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCce
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFS  146 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~  146 (452)
                      .+||++||++|||||||++||.++.+. .+.+|+|....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~   39 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK   39 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeee
Confidence            379999999999999999999988775 67777765544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.96  E-value=2.1e-06  Score=73.92  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=28.0

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      +..||+|||++|||||||++||+++.+. ...++.+..+..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~-~~~~~~~~~~~~   51 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE   51 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-ceecccccceeE
Confidence            3479999999999999999999998886 344565555443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.7e-06  Score=72.39  Aligned_cols=55  Identities=29%  Similarity=0.590  Sum_probs=46.4

Q ss_pred             eeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeec
Q psy14768        171 YLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDI  229 (452)
Q Consensus       171 ~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~  229 (452)
                      .||+|||+.+||||+|+.||..+.|.+.+.+++...+....    .+++..+.+.+||+
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~----~~~~~~~~~~i~D~   57 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF----EIDTQRIELSLWDT   57 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEE----ECSSCEEEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccc----cccceEEeeccccc
Confidence            58999999999999999999999999999998875544433    34678889999998

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=4.3e-06  Score=72.60  Aligned_cols=26  Identities=19%  Similarity=0.529  Sum_probs=23.7

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .+||+|+|.+|||||||+|++++...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~   33 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKER   33 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            38999999999999999999998664

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=1.7e-06  Score=74.51  Aligned_cols=25  Identities=28%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .|+|+|.+|||||||+|+|++....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~   26 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKA   26 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcc
Confidence            5899999999999999999987765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=3.6e-06  Score=74.33  Aligned_cols=41  Identities=20%  Similarity=0.164  Sum_probs=31.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceeeeeecc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHK  153 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (452)
                      +.|+|||.||||||||+|+|+++.+.    ++.+.+.....+...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~   44 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYD   44 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeC
Confidence            57999999999999999999998764    455555554444433

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.84  E-value=2.2e-06  Score=73.97  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+||++||++|||||||++||+.+.+. ...+|.|..+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~   50 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET   50 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEE
Confidence            489999999999999999999988776 445566555433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.83  E-value=1.3e-05  Score=74.48  Aligned_cols=91  Identities=12%  Similarity=0.033  Sum_probs=62.7

Q ss_pred             hhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCCCEEEE
Q psy14768        309 SRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNFMSWIE  388 (452)
Q Consensus       309 ~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~e  388 (452)
                      ....++.+|+||+|+|+.++.+..+-.  +..+.+        ++|+|||+||+|+.+.... +...++.+..++. +++
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~~--------~Kp~IlVlNK~DLv~~~~~-~~w~~~f~~~~~~-~i~   76 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPM--IEDILK--------NKPRIMLLNKADKADAAVT-QQWKEHFENQGIR-SLS   76 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHCS--------SSCEEEEEECGGGSCHHHH-HHHHHHHHTTTCC-EEE
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHHc--------CCCeEEEEECccCCchHHH-HHHHHHHHhcCCc-cce
Confidence            356789999999999999987765421  222222        4899999999999863222 2222333333444 899


Q ss_pred             ecCCCCccHHHHHHHHHHHHHHh
Q psy14768        389 VSSKEHLMIEDSMNFLVDRIICS  411 (452)
Q Consensus       389 vSAktg~nv~~lf~~i~~~i~~~  411 (452)
                      +||+++.++.++...+.+.+.+.
T Consensus        77 isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          77 INSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             eecccCCCccccchhhhhhhhhh
Confidence            99999999888887776655543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.82  E-value=5.4e-06  Score=71.13  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=28.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      .+||++||++|||||||++|+.++++. ...++.+..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~-~~~~~~~~~   50 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN   50 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-cccccccee
Confidence            389999999999999999999998887 334444433

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=5.3e-06  Score=72.15  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=29.8

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCcCcccc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGV  143 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~  143 (452)
                      -+||++||+.|||||||++||....|+..+.++.++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~~~~   37 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHF   37 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEEEEEE
Confidence            379999999999999999999988887655555433

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=9.4e-06  Score=71.14  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      +.+|+|||.+|||||||+|++++.+.
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~   48 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKN   48 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCc
Confidence            35899999999999999999998654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.70  E-value=8.5e-06  Score=73.32  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCcee
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFST  147 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~  147 (452)
                      .+.+||++||++|||||||++||..+.+    .||+|+....
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~   41 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK   41 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEE
Confidence            4568999999999999999999976654    5899866443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.68  E-value=1.7e-05  Score=68.42  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVD  144 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~  144 (452)
                      .|+|||.||||||||+|++++.+......++.+++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~   36 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK   36 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec
Confidence            48999999999999999999988775555544444

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=9.3e-06  Score=69.89  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=23.6

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +..++|+|||+||||||||+|++++.++.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            34589999999999999999999987765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=6.2e-05  Score=67.56  Aligned_cols=85  Identities=18%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             hhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcC-CCEEEEe
Q psy14768        312 YYQNSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYN-FMSWIEV  389 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~-~~~~~ev  389 (452)
                      .+.+.|.+++|+.+.++ .+...+..++-..+..       +++.+||+||+||.+.+ ..+....+..... ..+.+.+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~-------~i~pvIvlnK~DL~~~~-~~~~~~~~~~~~~~~~~v~~v   78 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-------ELETVMVINKMDLYDED-DLRKVRELEEIYSGLYPIVKT   78 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCHH-HHHHHHHHHHHHTTTSCEEEC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEeCcccCCHH-HHHHHHHhhcccccceeEEEe
Confidence            45789999999999875 4566677777666554       48999999999997521 2233334444322 2347999


Q ss_pred             cCCCCccHHHHHHHH
Q psy14768        390 SSKEHLMIEDSMNFL  404 (452)
Q Consensus       390 SAktg~nv~~lf~~i  404 (452)
                      ||+++.+++++...+
T Consensus        79 Sa~~~~g~~~L~~~l   93 (225)
T d1u0la2          79 SAKTGMGIEELKEYL   93 (225)
T ss_dssp             CTTTCTTHHHHHHHH
T ss_pred             ccccchhHhhHHHHh
Confidence            999999999987765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.3e-05  Score=69.49  Aligned_cols=61  Identities=18%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             CCceeEEEEcCCCCCchhhhhhhcccccccccCCCccccceeeeecccccCCccceeeeeeccccC
Q psy14768        168 TPSYLILITGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIYCTL  233 (452)
Q Consensus       168 ~~~~~Il~vgD~~vGkTsl~~r~~~~~~~~~~~~~i~~~~~~~~~~~~~id~~~~~l~i~d~~~~l  233 (452)
                      .+.++|++|||.+||||+|+.+|+.+.|.. +.++....+. +.+   .+++..+.+.+||+....
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~-~~i---~v~~~~~~l~i~Dt~g~~   63 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEM---LVDGQTHLVLIREEAGAP   63 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEE-EEE---EETTEEEEEEEEECSSCC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEE-EEe---ecCceEEEEEEeeccccc
Confidence            467999999999999999999999999865 4556555543 333   357888999999985433

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=2e-05  Score=69.63  Aligned_cols=38  Identities=16%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCccccCceee
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNTVGVDFSTK  148 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~~~~~~~~~  148 (452)
                      +|+|+|++|||||||+|||+++.+.. ..+|++.++...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~-~~~t~~~~~~~~   39 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIY   39 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-BCCCCSCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCc-ccCCeeEEEEEE
Confidence            58999999999999999999988874 346776665543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=4.2e-05  Score=65.50  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.1

Q ss_pred             cEEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        107 TVLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       107 ~~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +.-.|+|+|.+|||||||+|++++.++.
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~   31 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKIS   31 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCce
Confidence            3446999999999999999999987655

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.53  E-value=2.7e-05  Score=67.39  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=23.5

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .+.++|+|||.+|+|||||+|++++..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhc
Confidence            356799999999999999999999643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=2.3e-05  Score=67.57  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .|+|||++|||||||+|+|++....
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~   27 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPK   27 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCc
Confidence            3899999999999999999987665

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=2.8e-05  Score=67.31  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .|+|||+||||||||+|++++.+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~   27 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK   27 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc
Confidence            5899999999999999999886654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=6.2e-05  Score=67.81  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             hhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHH---HHHcCCCEEE
Q psy14768        312 YYQNSDGCIIMFDLTNR-KSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAV---CHQYNFMSWI  387 (452)
Q Consensus       312 ~i~~ad~vIlV~D~t~~-~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~---~~~~~~~~~~  387 (452)
                      .+.+.|.+++|+++.++ .++..+..++-..+..       +++.+||+||+||.+.....+.++.+   ...+++. .+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~-------~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-v~   78 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-VY   78 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-EE
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEecccccccHHHHHHHHHHHHHHhhcccc-ce
Confidence            35789999999999876 5667777776666554       58999999999998633333333333   3455776 89


Q ss_pred             EecCCCCccHHHHHHHH
Q psy14768        388 EVSSKEHLMIEDSMNFL  404 (452)
Q Consensus       388 evSAktg~nv~~lf~~i  404 (452)
                      .+||+++.+++++...+
T Consensus        79 ~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          79 LTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ECCHHHHTTCTTTGGGG
T ss_pred             eeecCChhHHHHHHHhh
Confidence            99999999998877654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.21  E-value=5.6e-05  Score=68.07  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      ..|+|+|.+|+|||||+|++++...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcc
Confidence            4599999999999999999987543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.17  E-value=0.00012  Score=67.14  Aligned_cols=27  Identities=37%  Similarity=0.636  Sum_probs=24.0

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .++|+|+|++|||||||+|.++++...
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~~~   58 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGERVV   58 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCce
Confidence            478999999999999999999986644

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.85  E-value=0.00019  Score=67.73  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +||.|||-||||||||||.+++.+..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~   26 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVE   26 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCc
Confidence            48999999999999999999986543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.0015  Score=63.48  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=23.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      ++|+|+|++|||||||+|.+++....
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~~~   82 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIGNE   82 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            78999999999999999999985543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.29  E-value=0.0012  Score=61.46  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .+||-|||-||||||||||.+++...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~   35 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVL   35 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCC
Confidence            47999999999999999999997543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.27  E-value=0.0012  Score=58.34  Aligned_cols=92  Identities=11%  Similarity=-0.029  Sum_probs=53.0

Q ss_pred             eEEEEEEecCCcchhhhh-h---hh---hh-----cCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEE
Q psy14768        291 PVKLQIWDIAGQDRYICM-S---RV---YY-----QNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL  358 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~-~---~~---~i-----~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV  358 (452)
                      .+.++|+||+|.-.+... .   ..   .+     ...+-++||+|++...  +++..........        -+--++
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~--------~~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV--------GLTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH--------CCSEEE
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhcc--------CCceEE
Confidence            356889999995433211 1   11   11     2457889999998664  3343333333333        234568


Q ss_pred             EECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       359 ~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      .+|.|-..   ..-.+..+....+.+ +.+++  +|++.+
T Consensus       158 ~TKlDet~---~~G~~l~~~~~~~~P-i~~i~--~Gq~p~  191 (207)
T d1okkd2         158 VTKLDGTA---KGGVLIPIVRTLKVP-IKFVG--VGEGPD  191 (207)
T ss_dssp             EECTTSSC---CCTTHHHHHHHHCCC-EEEEE--CSSSTT
T ss_pred             EeccCCCC---CccHHHHHHHHHCCC-EEEEe--CCCChH
Confidence            99999654   222345566777776 66666  455544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.0011  Score=58.84  Aligned_cols=93  Identities=16%  Similarity=0.063  Sum_probs=54.6

Q ss_pred             eEEEEEEecCCcchhhh-hh---hhh---hc-----CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEE
Q psy14768        291 PVKLQIWDIAGQDRYIC-MS---RVY---YQ-----NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLL  358 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~-~~---~~~---i~-----~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV  358 (452)
                      .+.++|+||+|...+.. ++   ..+   +.     ..+-++||+|++...  +++..........        -+-=++
T Consensus        93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~--------~~~~lI  162 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV--------NVTGII  162 (213)
T ss_dssp             TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS--------CCCEEE
T ss_pred             CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc--------CCceEE
Confidence            35688999999533221 11   111   11     146789999997542  4444443333333        344578


Q ss_pred             EECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        359 ASKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       359 ~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      ++|.|-..   ..-.+..+....+.+ +.+++  +|+++++
T Consensus       163 ~TKlDe~~---~~G~~l~~~~~~~~P-i~~i~--~Gq~v~D  197 (213)
T d1vmaa2         163 LTKLDGTA---KGGITLAIARELGIP-IKFIG--VGEKAED  197 (213)
T ss_dssp             EECGGGCS---CTTHHHHHHHHHCCC-EEEEE--CSSSGGG
T ss_pred             EecccCCC---cccHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            99999653   233456667777776 77777  6777654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.16  E-value=0.0016  Score=57.49  Aligned_cols=92  Identities=11%  Similarity=0.009  Sum_probs=55.5

Q ss_pred             EEEEEEecCCcchhhh--h-h---hhh--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCC
Q psy14768        292 VKLQIWDIAGQDRYIC--M-S---RVY--YQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCD  363 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~--~-~---~~~--i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~D  363 (452)
                      +.++|+||+|...+..  + .   ..+  .-..+-++||+|++...  +++..........        -+--++.+|.|
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~~~~~~--------~~~~lI~TKlD  164 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQAS--------KIGTIIITKMD  164 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHHC--------TTEEEEEECTT
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chHHHHhhhhccc--------CcceEEEeccc
Confidence            4688999999533321  1 1   111  22467889999998654  3333333323222        22346799999


Q ss_pred             CCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        364 LPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       364 l~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      ...   ..-.+..+....+.+ +.+++  +|++|++
T Consensus       165 et~---~~G~~l~~~~~~~lP-i~~it--~Gq~v~D  194 (211)
T d1j8yf2         165 GTA---KGGGALSAVAATGAT-IKFIG--TGEKIDE  194 (211)
T ss_dssp             SCS---CHHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             CCC---cccHHHHHHHHHCcC-EEEEe--CCCCccc
Confidence            653   455667777778877 77777  5777754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.0018  Score=59.69  Aligned_cols=42  Identities=7%  Similarity=0.105  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEECCCCCC-CcccHHHHHHHHHHcCCCEEEEecCC
Q psy14768        350 GAMLPCLLLASKCDLPD-RQVEINEIEAVCHQYNFMSWIEVSSK  392 (452)
Q Consensus       350 ~~~~piilV~NK~Dl~~-~~~~~e~~~~~~~~~~~~~~~evSAk  392 (452)
                      ...+|+++++|..+... .....+.+..+....+.. ++.+||+
T Consensus       197 Lt~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~-vI~isa~  239 (278)
T d1jala1         197 LTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV-VVPVCAA  239 (278)
T ss_dssp             STTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE-EEEECHH
T ss_pred             hhcchhhhhhccccccccccHHHHHHHHHHHhcCCe-EEEeEHH
Confidence            36799999999754322 233356677777777765 8999985

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0035  Score=55.27  Aligned_cols=92  Identities=17%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             EEEEEEecCCcchhhh-hh------hhhhc-----CCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEE
Q psy14768        292 VKLQIWDIAGQDRYIC-MS------RVYYQ-----NSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLA  359 (452)
Q Consensus       292 ~~l~l~DtaG~e~~~~-~~------~~~i~-----~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~  359 (452)
                      +.+.|+||+|.-.+.. +.      ...++     ..+-++||+|++...  +++..+.......        -+--++.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~--------~~~~lIl  161 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV--------GLTGITL  161 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS--------CCCEEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc--------CCceEEE
Confidence            5688999999432221 11      11222     246889999997553  4444443333333        3445789


Q ss_pred             ECCCCCCCcccHHHHHHHHHHcCCCEEEEecCCCCccHHH
Q psy14768        360 SKCDLPDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIED  399 (452)
Q Consensus       360 NK~Dl~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~~  399 (452)
                      +|.|-..   ..-.+..+....+.+ +.+++  +|++|++
T Consensus       162 TKlDe~~---~~G~~l~~~~~~~~P-i~~i~--~Gq~v~D  195 (211)
T d2qy9a2         162 TKLDGTA---KGGVIFSVADQFGIP-IRYIG--VGERIED  195 (211)
T ss_dssp             ECCTTCT---TTTHHHHHHHHHCCC-EEEEE--CSSSGGG
T ss_pred             eecCCCC---CccHHHHHHHHHCCC-EEEEe--CCCCccc
Confidence            9999753   233456667777777 77777  6777743

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.13  E-value=0.0012  Score=55.81  Aligned_cols=24  Identities=38%  Similarity=0.684  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +||+|+|.+|+|||||++.+++.-
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            489999999999999999998743

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.13  E-value=0.00021  Score=64.26  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=19.9

Q ss_pred             ccEEEeeecccCCcceeeecccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQN  263 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~  263 (452)
                      -..+++|.+|||||||+|+|+++
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            45679999999999999999975

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0098  Score=52.62  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=41.2

Q ss_pred             CCCEEEEEEeCCChhhHHH-HHHHHHHHHhhhhhcCCCCCcEEEEEECCCCCCCcccHHHHHHHHHHcCC-CEEEEecCC
Q psy14768        315 NSDGCIIMFDLTNRKSFES-VVQWKHDLDSKCILDNGAMLPCLLLASKCDLPDRQVEINEIEAVCHQYNF-MSWIEVSSK  392 (452)
Q Consensus       315 ~ad~vIlV~D~t~~~S~~~-~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl~~~~~~~e~~~~~~~~~~~-~~~~evSAk  392 (452)
                      ..+++|.|+|+......-. ...+..++..          .=+||+||+|+...   .+.+++..+.++- .++++++ .
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~----------AD~ivlNK~Dl~~~---~~~~~~~l~~lNP~a~Ii~~~-~  186 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGY----------ADRILLTKTDVAGE---AEKLHERLARINARAPVYTVT-H  186 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHT----------CSEEEEECTTTCSC---THHHHHHHHHHCSSSCEEECC-S
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHh----------CCcccccccccccH---HHHHHHHHHHHhCCCeEEEee-C
Confidence            3588899999987643221 1223333432          24688999999751   2455666666644 3355544 3


Q ss_pred             CCccHHHHH
Q psy14768        393 EHLMIEDSM  401 (452)
Q Consensus       393 tg~nv~~lf  401 (452)
                      -...+..+|
T Consensus       187 g~v~~~~ll  195 (222)
T d1nija1         187 GDIDLGLLF  195 (222)
T ss_dssp             SCCCGGGGS
T ss_pred             CccCHHHhh
Confidence            234555554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.0019  Score=56.72  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=48.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc--------cCC----CCC-----cCccccCceeeeeeccccCCCCCCCCCCC-----
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN--------KFL----DNY-----KNTVGVDFSTKLLSHKKYGGRPYGTFSPI-----  166 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~--------~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  166 (452)
                      +.|+++|.++.|||||+++++..        .+.    .++     ..+++++.....+.|........++.+..     
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~   83 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN   83 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHH
Confidence            68999999999999999999631        000    011     11445555555555655444444444432     


Q ss_pred             ----CCCceeEEEEcCCCCCchh
Q psy14768        167 ----QTPSYLILITGDSTVGKTS  185 (452)
Q Consensus       167 ----~~~~~~Il~vgD~~vGkTs  185 (452)
                          ......+++|+|+..|...
T Consensus        84 ~~~~~~~aD~avlVvda~~Gv~~  106 (204)
T d2c78a3          84 MITGAAQMDGAILVVSAADGPMP  106 (204)
T ss_dssp             HHHHHTTCSSEEEEEETTTCCCH
T ss_pred             HHHHHHHCCEEEEEEECCCCCcH
Confidence                1223468999999988775

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.68  E-value=0.0024  Score=55.70  Aligned_cols=78  Identities=10%  Similarity=0.021  Sum_probs=46.3

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhc----------------cCCCCCcCccccCceeeeeeccccCCCCCCCCCC------
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQN----------------KFLDNYKNTVGVDFSTKLLSHKKYGGRPYGTFSP------  165 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  165 (452)
                      .+.|+++|..+.|||||++++.+.                ....+...+++++.....+.+..+.....++.+.      
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            368999999999999999999751                1111222334444443444444433222222222      


Q ss_pred             ---CCCCceeEEEEcCCCCCchh
Q psy14768        166 ---IQTPSYLILITGDSTVGKTS  185 (452)
Q Consensus       166 ---~~~~~~~Il~vgD~~vGkTs  185 (452)
                         +......+++|+|+..|...
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~  105 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMP  105 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCH
T ss_pred             HHHHHhhcCeEEEEEEcCCCCch
Confidence               23344578999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.0034  Score=55.86  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..+++|.+|||||||+|.+.++
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            4789999999999999999764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.42  E-value=0.0032  Score=52.83  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +|+|+|.+|+|||||++++...
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.34  E-value=0.0042  Score=53.61  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +-|+++|.||+|||||++++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999985

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.045  Score=49.88  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=48.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc-----cCC-------------CCCcCccccCceeeeeeccccCCCCCCCCCCCC--CC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN-----KFL-------------DNYKNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ--TP  169 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  169 (452)
                      .|+|||-.+.|||||+-+++..     +..             .+..-++++.-....+.|++....+.++.+..+  .+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            4899999999999999999741     110             111123344444555666665555555555542  11


Q ss_pred             c-------eeEEEEcCCCCCchhhhh
Q psy14768        170 S-------YLILITGDSTVGKTSYVQ  188 (452)
Q Consensus       170 ~-------~~Il~vgD~~vGkTsl~~  188 (452)
                      .       ...++|+|+..|...-..
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~~T~  113 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEPQSE  113 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCHHHH
T ss_pred             HHHHHHhhhheEEeccccCCcchhHH
Confidence            1       268899999888876533

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.18  E-value=0.0033  Score=52.35  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +++|+|+|.||+||||+.+++..+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.08  E-value=0.011  Score=51.81  Aligned_cols=92  Identities=15%  Similarity=0.001  Sum_probs=50.0

Q ss_pred             eEEEEEEecCCcchhhhh-h---hh--hhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEEEEEECCCC
Q psy14768        291 PVKLQIWDIAGQDRYICM-S---RV--YYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCLLLASKCDL  364 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~-~---~~--~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~piilV~NK~Dl  364 (452)
                      .+.+.|+||+|...+... .   ..  ..-+.+-++||.|++.+.  +++.. ...+....       -.-=++++|.|-
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~~-~~~f~~~~-------~~~~~I~TKlDe  161 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSV-ARAFDEKV-------GVTGLVLTKLDG  161 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHHH-HHHHHHHT-------CCCEEEEECGGG
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hHHHH-HHHHHhhC-------CCCeeEEeecCc
Confidence            357889999995433211 1   11  134678899999997663  33322 22232221       122477899996


Q ss_pred             CCCcccHHHHHHHHHHcCCCEEEEecCCCCccHH
Q psy14768        365 PDRQVEINEIEAVCHQYNFMSWIEVSSKEHLMIE  398 (452)
Q Consensus       365 ~~~~~~~e~~~~~~~~~~~~~~~evSAktg~nv~  398 (452)
                      ..   ..-.+..+....+.+ +.+++  .|+..+
T Consensus       162 ~~---~~G~~l~~~~~~~~P-i~~i~--~Gq~pe  189 (207)
T d1ls1a2         162 DA---RGGAALSARHVTGKP-IYFAG--VSEKPE  189 (207)
T ss_dssp             CS---SCHHHHHHHHHHCCC-EEEEC--------
T ss_pred             cc---cchHHHHHHHHHCCC-EEEEe--CCCChh
Confidence            43   334556677777776 66665  344443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.33  E-value=0.01  Score=50.95  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=23.0

Q ss_pred             ccEEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        106 ETVLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       106 ~~~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .+.++|+|+|.||+||||+..+++.+
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.01  Score=51.34  Aligned_cols=25  Identities=36%  Similarity=0.577  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .+++||+||||||+++..++++-..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHHh
Confidence            4799999999999999999875543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.012  Score=48.84  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      |+|.|.||+|||||+..++..-
T Consensus         4 v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7899999999999999998643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.93  E-value=0.0033  Score=52.85  Aligned_cols=22  Identities=45%  Similarity=0.730  Sum_probs=20.3

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      +||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999998885

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=93.91  E-value=0.013  Score=48.60  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|.|.||+||||+.+.+..+
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            68999999999999999999764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.014  Score=48.22  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|+|.+|+|||||+++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.81  E-value=0.036  Score=47.39  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhcc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .+.|+|+|..+.|||||++++++..
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhh
Confidence            4689999999999999999998743

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.73  E-value=0.014  Score=49.06  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||+...+...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.72  E-value=0.015  Score=47.18  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      |+|.|.||+|||||++++....
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6789999999999999997643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.016  Score=54.30  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .+.|.|.|.||||||||+++++..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHH
Confidence            378999999999999999999853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.64  E-value=0.0016  Score=56.42  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      +.-|+++|.||+||||+.+++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.61  E-value=0.015  Score=49.51  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||+..++..+
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.57  E-value=0.017  Score=47.51  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|.|.||+||||+++++...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.014  Score=53.06  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      .+++||+||||||+++..++++-..
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHHh
Confidence            5799999999999999999875543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.56  E-value=0.013  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +.|+|.+|+|||||+++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            459999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.39  E-value=0.017  Score=48.79  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||+..++...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.23  E-value=0.021  Score=48.17  Aligned_cols=23  Identities=17%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||+..++...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.026  Score=51.66  Aligned_cols=26  Identities=35%  Similarity=0.671  Sum_probs=23.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      +.+|++||+-+.|||||+|.+++..+
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCc
Confidence            45799999999999999999999886

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.12  E-value=0.031  Score=51.38  Aligned_cols=27  Identities=33%  Similarity=0.650  Sum_probs=24.4

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFL  134 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~  134 (452)
                      +.+|+|||+.+.|||||+|.+++..+-
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            468999999999999999999998863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.023  Score=46.12  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .|+|+|.+||||||+.+.+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3888999999999999999764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=0.021  Score=48.72  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      |+|+|.+||||+||.++++.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.83  E-value=0.025  Score=47.36  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=18.2

Q ss_pred             EE-EEEcCCCCchHHHHHHHhhc
Q psy14768        110 KI-LVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv-~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+ +|.|-+|+||||+++.+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            54 56799999999999999753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.024  Score=48.10  Aligned_cols=21  Identities=14%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|+|.+||||+||+++++++
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.51  E-value=0.027  Score=47.47  Aligned_cols=23  Identities=17%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||+...+...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.027  Score=47.30  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||+..++..+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.41  E-value=0.028  Score=47.45  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|+|.+|+|||||++.+..+
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.35  E-value=0.036  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|.||+||||+..+++..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.033  Score=50.81  Aligned_cols=60  Identities=17%  Similarity=0.050  Sum_probs=39.3

Q ss_pred             cccEEEeeecccCCcceeeeccccccccc-----cCCcceeeeEEEEEEeeecCCeeEEEEEEecCCcc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQNKFLDN-----YKNTVGVDFSTKLLSHKKYGGRPVKLQIWDIAGQD  303 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~~~~~~~-----~~~t~~~d~~~~~i~~~~~~~~~~~l~l~DtaG~e  303 (452)
                      -.-|+|+|+..+|||+|+|.+++..+.-.     ..-|.|.-.....    ..++....+.++||-|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~----~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVP----HPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEE----CSSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEee----ccCCCCceEEEEeccccc
Confidence            34678999999999999999998543222     1234443222221    125566778899999853

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.042  Score=46.59  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|+|.||+||||...+++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.04  E-value=0.027  Score=47.84  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|.|.||+||||+..++..+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.91  E-value=0.03  Score=46.46  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +|+++|-|||||||+.+.+...
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999888643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.86  E-value=0.039  Score=45.77  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|.|-+|+||||+.+++...
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788899999999999998653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=91.79  E-value=0.046  Score=47.79  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -|+|+|-+|+|||||++++.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4789999999999999999854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.04  Score=47.87  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|+|.+|||||||.++++..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999865

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.042  Score=46.89  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |||+|.+||||+||+++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=91.42  E-value=0.014  Score=48.13  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .++|+++|.||+||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.32  E-value=0.011  Score=49.30  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .-+|+|+|.+|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=91.30  E-value=0.017  Score=47.85  Aligned_cols=25  Identities=36%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             CCcccEEEeeecccCCcceeeeccc
Q psy14768        238 IPTYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       238 ~~~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ...++|++.|.||+||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4568999999999999999988764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.29  E-value=0.05  Score=45.73  Aligned_cols=21  Identities=19%  Similarity=0.493  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      -|+++|-||+||||++.++..
T Consensus        16 liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.014  Score=48.06  Aligned_cols=21  Identities=19%  Similarity=0.291  Sum_probs=18.9

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -++|+|.+|+|||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999984

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.16  E-value=0.035  Score=53.21  Aligned_cols=22  Identities=41%  Similarity=0.673  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +++||+||||||+|+..++++-
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999997776543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.94  E-value=0.056  Score=44.48  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|+|.||+||||+.+.+..+
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999888653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.78  E-value=0.074  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ..|+|+|.||+||||+..++.+.
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45888999999999999999763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=90.75  E-value=0.06  Score=44.18  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|.|.||+||||+.+.+...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999999764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.65  E-value=0.066  Score=49.87  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +.|-|.|.||+|||||+++++..
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHH
Confidence            78999999999999999999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.065  Score=43.97  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|.|.||+||||+.+.+...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3677899999999999999764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=90.16  E-value=0.073  Score=43.92  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|+|-||+||||+...+...
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.07  E-value=0.068  Score=47.20  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |+|.|.+|+|||+|+++++..
T Consensus        32 i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          32 TLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHH
Confidence            788899999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.98  E-value=0.091  Score=43.07  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +-|.|+|-||+||||+...+...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999888653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.83  E-value=0.066  Score=47.49  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhccC
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      |++.|.||+|||+|+..+.....
T Consensus        35 ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            88999999999999999987543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.081  Score=47.07  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +++|||.+|.|||||++-+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999998763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=89.67  E-value=0.083  Score=43.79  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~  130 (452)
                      |+++|-||+||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999974

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.55  E-value=0.025  Score=46.88  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             cE-EEeeecccCCcceeeeccc
Q psy14768        242 PI-LITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI-~ivG~~nvGKSSLin~l~~  262 (452)
                      || .|+|.+|+|||||+++++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999999874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.48  E-value=0.076  Score=46.55  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +++.|.||||||++++-++++.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999988653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.45  E-value=0.085  Score=47.30  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +++|||.+|.|||||++-+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            699999999999999998875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.42  E-value=0.077  Score=45.02  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -|+|+|.||+||||+..+++.+
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3788999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.36  E-value=0.09  Score=46.78  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +++|||.+|.|||||++-+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.094  Score=46.93  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +++|||.+|+|||||++-+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            699999999999999998865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.12  E-value=0.032  Score=47.32  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=20.9

Q ss_pred             CcccEEEeeecccCCcceeeeccc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .+++|+++|+||+||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999987764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.10  E-value=0.11  Score=43.44  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +-|.|-|.+|+|||||.+++..
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999975

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.93  E-value=0.092  Score=45.24  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++|+|-|.||+||||+..++..+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57888899999999999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.82  E-value=0.098  Score=45.07  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .++|+|..|+|||||++-+++-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            37899999999999999998744

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.72  E-value=0.11  Score=47.40  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +++|||.+|+|||||++-+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999998764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.54  E-value=0.17  Score=44.25  Aligned_cols=26  Identities=19%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             cccEEEEEEEcCCCCchHHHHHHHhh
Q psy14768        105 AETVLKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       105 ~~~~~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +...+++++||..+.|||||+.+++.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHH
Confidence            34568999999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.20  E-value=0.033  Score=46.62  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.2

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ++|+|+|.||+||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999887754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.17  E-value=0.034  Score=44.94  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=17.7

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |++.|.||+|||||++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=88.15  E-value=0.11  Score=45.43  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +++.|.||+|||++++-++.+-
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHhcc
Confidence            7899999999999999987643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=88.03  E-value=0.078  Score=49.20  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      -|+|+|+||+|||+|+.++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            379999999999999999975

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.99  E-value=0.12  Score=45.44  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      -++|.|.||+|||++++.+...-
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999887643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.94  E-value=0.097  Score=46.97  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +++|||.+|.|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            699999999999999987765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.83  E-value=0.21  Score=42.77  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      +.|+|+|..+.|||||++++++
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEEccCCcHHHHHHHHHh
Confidence            6899999888899999999986

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.23  Score=44.88  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=25.6

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhccCCCCCc
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQNKFLDNYK  138 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~~~~~~~~  138 (452)
                      ..-|.|+|....|||+|+|++.+..+.....
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~   62 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLG   62 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccC
Confidence            4578999999999999999999987654333

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=87.41  E-value=0.039  Score=46.43  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ++|+++|.||+||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988774

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.042  Score=45.36  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.8

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.36  E-value=0.14  Score=45.18  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .++|+|.+|+|||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            489999999999999987765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.095  Score=43.85  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +.|.|+|-||+||||+.+.+...
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=87.18  E-value=0.042  Score=44.97  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=18.0

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |++.|.||+||||++++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=87.01  E-value=0.048  Score=46.13  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=20.8

Q ss_pred             CcccEEEeeecccCCcceeeeccc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ..++|+++|+||+||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999987763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.15  Score=44.93  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .++|+|.+|+|||||++-+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4899999999999999988663

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.99  E-value=0.043  Score=46.04  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ++|+++|.||+||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.98  E-value=0.15  Score=45.13  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      ++|+|.+|+|||||++-+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6789999999999999998743

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.84  E-value=1.1  Score=38.09  Aligned_cols=77  Identities=10%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             eEEEEEEecCCcchhhhhhhhhhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhhhhhcCCCCCcEE-EEEECCCCCCCcc
Q psy14768        291 PVKLQIWDIAGQDRYICMSRVYYQNSDGCIIMFDLTNRKSFESVVQWKHDLDSKCILDNGAMLPCL-LLASKCDLPDRQV  369 (452)
Q Consensus       291 ~~~l~l~DtaG~e~~~~~~~~~i~~ad~vIlV~D~t~~~S~~~~~~~~~~i~~~~~~~~~~~~pii-lV~NK~Dl~~~~~  369 (452)
                      .+.++++|+++.-..  .....+..+|.++++...+ ..++.++......+++.       +.|++ ||.|+.|..+...
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-------~~~~~giv~N~~~~~~~~~  180 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-------GLAILGFVLNRYGRSDRDI  180 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-------TCEEEEEEEEEETSCTTCC
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh-------hhhhhhhhhcccccccchh
Confidence            456889999975432  2344567899999998864 56667766666666543       36655 8899998765444


Q ss_pred             cHHHHHHH
Q psy14768        370 EINEIEAV  377 (452)
Q Consensus       370 ~~e~~~~~  377 (452)
                      ..+..+++
T Consensus       181 ~~~~~~~~  188 (237)
T d1g3qa_         181 PPEAAEDV  188 (237)
T ss_dssp             CHHHHHHH
T ss_pred             hhHHHHhh
Confidence            44444443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.28  E-value=0.88  Score=39.30  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             ccEEEeeecccCCcceeeecccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQN  263 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~~  263 (452)
                      ..+++.|++|+|||+++..+..+
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999887753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.25  E-value=0.061  Score=45.56  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      +..|+|+|+||+||||+..+|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999988874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=86.16  E-value=0.057  Score=43.49  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .|+++|.+|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999887764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.11  E-value=0.16  Score=44.81  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +++.|.||+|||++++.+...-
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4556999999999999998653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.08  E-value=0.18  Score=44.61  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .+.|+|.+|+|||||++-+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4899999999999999988764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.05  E-value=0.17  Score=46.41  Aligned_cols=21  Identities=38%  Similarity=0.577  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      ++++|.||||||.|++.+...
T Consensus        52 iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          52 ILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhc
Confidence            688999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.95  E-value=0.23  Score=41.65  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +-|+|.|..|+||||+++.+...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.056  Score=45.20  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ++|+++|.||+||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999887764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.78  E-value=0.19  Score=43.54  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhcc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      +++.|.||+|||++++.+...-
T Consensus        48 lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7899999999999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=85.69  E-value=0.064  Score=48.54  Aligned_cols=80  Identities=10%  Similarity=0.012  Sum_probs=47.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCC------CCC------------cCccccCceeeeeeccccCCCCCCCCCCCC----
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFL------DNY------------KNTVGVDFSTKLLSHKKYGGRPYGTFSPIQ----  167 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  167 (452)
                      .|+|||-.+.|||||+-+++...-.      .+.            .-.+++......+.|+.......++.+..+    
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            3899999999999999999632111      011            122244444445566554444455544432    


Q ss_pred             -----CCceeEEEEcCCCCCchhhhhh
Q psy14768        168 -----TPSYLILITGDSTVGKTSYVQG  189 (452)
Q Consensus       168 -----~~~~~Il~vgD~~vGkTsl~~r  189 (452)
                           .-....++|+|+..|...-..+
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~  110 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTER  110 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHH
T ss_pred             hhhhhcccCceEEEeeccCCccchhHH
Confidence                 1112688899999998765433

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.65  E-value=0.19  Score=44.50  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -|++.|.||+|||+|++.+++.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            5899999999999999999764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.58  E-value=0.2  Score=43.91  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      -+++.|.||+|||+++.-+++..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=85.49  E-value=0.15  Score=44.95  Aligned_cols=21  Identities=14%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .++|||..|.|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            489999999999999999987

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=0.2  Score=41.91  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      -++|.|+||+|||+|...++.+-.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999986443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.45  E-value=0.24  Score=41.68  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      -|++.|++|+|||+|...++.+-+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            489999999999999999987654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=85.21  E-value=0.06  Score=45.82  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=21.1

Q ss_pred             CcccEEEeeecccCCcceeeeccc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ..++|+++|.||+||||+...|..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999888774

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.26  Score=42.08  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCchHHHHHHHhhc
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +.|.|-|.+|+||||+.+++...
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=84.90  E-value=0.21  Score=44.21  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      -++|+|.+|+|||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            489999999999999998876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.82  E-value=0.07  Score=44.76  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .++|+++|.||+||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=84.59  E-value=0.21  Score=42.49  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccCCCCCcCc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKFLDNYKNT  140 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~~~~~~~~  140 (452)
                      -|+|.|.||+||+|+..++..+. ...+..|
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~-gl~~iSt   34 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL-QWHLLDS   34 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-TCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-CCcEECH
Confidence            47788999999999999997643 3334444

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=0.076  Score=47.28  Aligned_cols=23  Identities=26%  Similarity=0.224  Sum_probs=20.2

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .-+++|+|++|+|||||++.+.+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35789999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.072  Score=45.02  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ++.|+|+|+||+||||....+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999887764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=84.07  E-value=0.18  Score=44.32  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|+|.+|+|||||++-+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999999874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=83.96  E-value=0.081  Score=43.69  Aligned_cols=19  Identities=32%  Similarity=0.392  Sum_probs=17.1

Q ss_pred             EEEeeecccCCcceeeecc
Q psy14768        243 ILITGDSTVGKTSYVQGFV  261 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~  261 (452)
                      |+|.|.+|+||||+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999998875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.93  E-value=0.23  Score=43.32  Aligned_cols=24  Identities=21%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .+++.|.+|+|||+++.-++.+-+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhc
Confidence            378999999999999999987543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=83.86  E-value=0.28  Score=40.91  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      -|+|.|++|+|||+|...++.+-+
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            589999999999999999987654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=83.77  E-value=0.27  Score=43.47  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      .+.|||.+|.|||||++-+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4899999999999999988764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=83.77  E-value=0.26  Score=43.65  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      |++.|.||+|||+|++.+.+.
T Consensus        45 iLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHHH
Confidence            899999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=83.55  E-value=0.27  Score=43.45  Aligned_cols=24  Identities=21%  Similarity=0.119  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      .+.|||..|.|||||++-+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.51  E-value=0.093  Score=43.05  Aligned_cols=20  Identities=20%  Similarity=0.561  Sum_probs=17.4

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |++.|.+|+||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999887764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=83.35  E-value=0.1  Score=42.72  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=19.3

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .+-|.++|.||+||||+...|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999877763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.28  E-value=0.089  Score=44.04  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             CcccEEEeeecccCCcceeeeccc
Q psy14768        239 PTYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       239 ~~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .+.-|+++|.||+||||++.+++.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.22  E-value=0.26  Score=42.42  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             EEEEcCCCCchHHHHHHHhhccC
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      +++.|.+|+|||+++..++++-+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            78999999999999999987543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.17  E-value=0.27  Score=42.30  Aligned_cols=22  Identities=14%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|.|+||+|||+|...|+-.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3788999999999999999743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.15  E-value=0.096  Score=46.94  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -.++|+|++|+|||||++.+++
T Consensus        42 e~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4789999999999999988874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=83.05  E-value=0.28  Score=42.12  Aligned_cols=24  Identities=21%  Similarity=0.022  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      -++|.|+||+|||+|...++-+-.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999986543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=83.02  E-value=0.33  Score=40.74  Aligned_cols=24  Identities=21%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhccC
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNKF  133 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~~  133 (452)
                      =|+|.|.+|+|||+|...++.+-+
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            489999999999999999986544

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.01  E-value=0.3  Score=42.04  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +++.|.||+||||+++-++..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHH
Confidence            789999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.01  E-value=0.087  Score=44.53  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=18.5

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |+|+|++|+||+||+++++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=82.92  E-value=0.29  Score=43.21  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      -+.|+|..|.|||||++-+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998743

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=82.71  E-value=0.1  Score=43.29  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=17.2

Q ss_pred             ccEE-EeeecccCCcceeeecc
Q psy14768        241 YPIL-ITGDSTVGKTSYVQGFV  261 (452)
Q Consensus       241 ~kI~-ivG~~nvGKSSLin~l~  261 (452)
                      +||+ |.|.+|+||||+++.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3554 57999999999998875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.66  E-value=0.3  Score=42.40  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      -++|.|+||+|||+|...|+.+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47889999999999999997543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=82.52  E-value=0.099  Score=46.51  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -.++|+|++|+|||||++.+.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999988774

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.42  E-value=0.3  Score=42.14  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchHHHHHHHhhc
Q psy14768        111 ILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       111 v~ivG~~~vGKs~l~~r~~~~  131 (452)
                      +++.|.+|+|||++++.++.+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            688999999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=82.42  E-value=0.3  Score=47.22  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .|++||.+|||||-|++++.+
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999986

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.40  E-value=0.1  Score=42.92  Aligned_cols=21  Identities=14%  Similarity=0.199  Sum_probs=18.3

Q ss_pred             ccEEEeeecccCCcceeeecc
Q psy14768        241 YPILITGDSTVGKTSYVQGFV  261 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~  261 (452)
                      .+|+++|.+|+||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            478999999999999977765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=82.39  E-value=0.31  Score=42.24  Aligned_cols=22  Identities=45%  Similarity=0.619  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -++|.|+||+|||+|+.+++.+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788899999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.34  E-value=0.31  Score=43.52  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .+.|||.+|+|||||++-+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.23  E-value=0.11  Score=44.82  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -.++++|+.|+|||||++.+++
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3578999999999999998875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.99  E-value=0.099  Score=43.84  Aligned_cols=20  Identities=30%  Similarity=0.627  Sum_probs=17.9

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |+++|++|+||+||++.+..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67899999999999998874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.89  E-value=0.12  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=19.9

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .-+++|+|++|+|||||++.+.+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            35789999999999999987764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.81  E-value=0.11  Score=46.53  Aligned_cols=22  Identities=14%  Similarity=0.148  Sum_probs=19.6

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -.++|+|++|+|||||++.+.+
T Consensus        41 e~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999998764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.72  E-value=0.35  Score=43.44  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .-|+|+|-+|+|||||+..+.+
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.63  E-value=0.35  Score=42.94  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -+++.|.||+|||+|++.++..
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4899999999999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.60  E-value=0.35  Score=43.06  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhcc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQNK  132 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~~  132 (452)
                      .+.|+|..|.|||||++-+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            37999999999999999998753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.45  E-value=0.25  Score=42.63  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=18.5

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            588999999999999887764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=81.42  E-value=0.33  Score=43.23  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhc
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQN  131 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~~  131 (452)
                      -+++.|.||+|||++++.++..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999999853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=0.11  Score=43.68  Aligned_cols=20  Identities=15%  Similarity=0.429  Sum_probs=18.5

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |+++|++|+||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999885

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=81.08  E-value=0.12  Score=42.23  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=16.8

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      |++.|.+|+||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45669999999999988764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=80.98  E-value=0.51  Score=40.81  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      ..|++||.+||||||.+-++..
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999998877764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.93  E-value=0.12  Score=47.02  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -.++|+|++|+|||||++.+++
T Consensus        63 e~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhC
Confidence            4689999999999999998875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=0.12  Score=42.17  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=17.4

Q ss_pred             EEEeeecccCCcceeeeccc
Q psy14768        243 ILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       243 I~ivG~~nvGKSSLin~l~~  262 (452)
                      ++++|.+|+||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999998764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.83  E-value=0.13  Score=42.93  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             cccEEEeeecccCCcceeeeccc
Q psy14768        240 TYPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       240 ~~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      ++-|+|.|.+|+|||||.+.|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998863

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=80.81  E-value=0.13  Score=42.28  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.0

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      +|+++|.+|+||||+...+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999877753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=80.76  E-value=0.41  Score=41.23  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      -+++||.+||||||.+-++..
T Consensus         8 vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999888864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.75  E-value=0.13  Score=45.37  Aligned_cols=22  Identities=23%  Similarity=0.151  Sum_probs=18.8

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      --++++|++|+|||||++.+.+
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCcchhhHhccC
Confidence            3578999999999999997765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.70  E-value=0.21  Score=47.52  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=18.3

Q ss_pred             ccEEEeeecccCCcceeeeccc
Q psy14768        241 YPILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       241 ~kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -.+++||+||||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4578999999999999876653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=80.53  E-value=0.42  Score=41.32  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCchHHHHHHHhh
Q psy14768        109 LKILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       109 ~kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .-|++||.+||||||.+-++..
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999988864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.36  E-value=0.24  Score=43.88  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .++|+|.+|+|||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999999999976

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=80.33  E-value=0.13  Score=44.46  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.6

Q ss_pred             cEEEeeecccCCcceeeeccc
Q psy14768        242 PILITGDSTVGKTSYVQGFVQ  262 (452)
Q Consensus       242 kI~ivG~~nvGKSSLin~l~~  262 (452)
                      -|+++|++||||+||+++++.
T Consensus         4 livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            367899999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.23  E-value=0.45  Score=40.11  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q psy14768        110 KILVIGDSTVGKTSYVQGFVQ  130 (452)
Q Consensus       110 kv~ivG~~~vGKs~l~~r~~~  130 (452)
                      .|+|.|--|+||||++..+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988864

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.09  E-value=0.26  Score=43.53  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             EEEEEEEcCCCCchHHHHHHHhhc----------------------cC---------CCCCcCccccCceeeeeeccccC
Q psy14768        108 VLKILVIGDSTVGKTSYVQGFVQN----------------------KF---------LDNYKNTVGVDFSTKLLSHKKYG  156 (452)
Q Consensus       108 ~~kv~ivG~~~vGKs~l~~r~~~~----------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~  156 (452)
                      .+.|+++|--..|||||+-|++..                      .|         ..+-..+++++.....+.+..+.
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            478999999999999999998631                      00         01123455666666666666655


Q ss_pred             CCCCCCCCCCC---------CCceeEEEEcCCCCC
Q psy14768        157 GRPYGTFSPIQ---------TPSYLILITGDSTVG  182 (452)
Q Consensus       157 ~~~~~~~~~~~---------~~~~~Il~vgD~~vG  182 (452)
                      ..+.++.+..+         ......++|+|+..|
T Consensus        86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G  120 (239)
T d1f60a3          86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  120 (239)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC
Confidence            55555544432         333468888888766