Psyllid ID: psy1489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
NISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHcccccccccccEEEEEEccccccccccEEEEccccccHHHHHHHHHHHccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHccccEEEcccccccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHccccccccccccEEEEEEccccccccccEEEEEcccccHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccEEEEccccccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
nisttgpklkevpkgkdhsshlwlkrqfadpyvqkaKKENYRCRSAFKLLEIDSKIkflrpglkvldcgaapgsWSQVAVKLVNshgydskqpkglvlsvdklpiypidgavvlskcdftqpdiQDRLVTILkddkldvvlsdmapnatgmreMDHDLITQLAIAVIRFAVtyskpgadclikiwdgrnrpqlEESITRFYSQvkilkppssrshsaELFLlgrgfkgk
Flexible Loop (DISEMBL)
nisttgpklkevpkgkdhsshlwlkrqfadpyvQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVtilkddkldvVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVkilkppssrshsaelfllgrgfkgk
Low Complexity Region (SEG)
NISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIlkddkldvvlSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK
Disordered region (IsUnstruct)
********************HLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL**********************
Disordered Region (DISOPRED)
*************************RQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG*
Disordered Region (DISEMBL)
********************HLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK
Disordered Region (DISPRO)
******PKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9VDT6	250	Putative ribosomal RNA me	yes	N/A	0.938	0.86	0.530	6e-62
Q9CPY0	246	Putative ribosomal RNA me	yes	N/A	0.938	0.873	0.469	2e-56
Q9UI43	246	Putative ribosomal RNA me	yes	N/A	0.943	0.878	0.458	2e-55
A7IDJ5	254	Ribosomal RNA large subun	yes	N/A	0.912	0.822	0.412	1e-42
A8II77	240	Ribosomal RNA large subun	yes	N/A	0.908	0.866	0.4	9e-41
Q164M8	240	Ribosomal RNA large subun	yes	N/A	0.947	0.904	0.397	3e-40
A1B962	256	Ribosomal RNA large subun	yes	N/A	0.934	0.835	0.407	6e-40
A7HSA5	254	Ribosomal RNA large subun	yes	N/A	0.925	0.834	0.412	9e-40
Q3J2Q5	244	Ribosomal RNA large subun	yes	N/A	0.934	0.877	0.416	1e-39
A3PJK8	244	Ribosomal RNA large subun	yes	N/A	0.943	0.885	0.412	1e-39

>sp|Q9VDT6|RRMJ1_DROME Putative ribosomal RNA methyltransferase CG11447 OS=Drosophila melanogaster GN=CG11447 PE=2 SV=1

 Score =  237 bits (604), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 146/215 (67%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           KG+  SS  WL RQ ADPYV+KA+  NYRCRSAFKLLEID K   LRPG  VL+CGAAPG
Sbjct: 32  KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPG 91

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
           SW+QVAV+  N++G   + P+G V S+D L  + + GA +    DFT    Q RL   L+
Sbjct: 92  SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREALQ 151

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
           D K++ VLSDMAPNATG+R +D + IT L   V+RFA+  S P A  ++K+WD  + P+L
Sbjct: 152 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           E  + RFY +VK +KP +SR  SAE FL+ R FKG
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246

Probable methyltransferase.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9CPY0|RRMJ2_MOUSE Putative ribosomal RNA methyltransferase 2 OS=Mus musculus GN=Ftsj2 PE=2 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 143/215 (66%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           +G+  + HLWL R   DP+V+ AK E+YRCRSAFKLLE++ K + LRPGL+VLDCGAAPG
Sbjct: 25  RGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGLRVLDCGAAPG 84

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
           +WSQVAV+ VN+ G DS  P G VL VD L I+P+ GA  L   D T P    +++ +L 
Sbjct: 85  AWSQVAVQRVNATGADSSSPVGFVLGVDLLHIFPLAGATFLCPADVTDPRTFQKILELLP 144

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
             + DV+LSDMAPNATG+R++DHD +  L + ++  AV    PG   L K W G     L
Sbjct: 145 SRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLL 204

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           ++ +T+ +   +++KP +SR  S+E++LL   ++G
Sbjct: 205 QKRLTQEFQSTRVVKPEASRKESSEVYLLATQYRG 239

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9UI43|RRMJ2_HUMAN Putative ribosomal RNA methyltransferase 2 OS=Homo sapiens GN=FTSJ2 PE=1 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 139/216 (64%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           K +  + HLWL R   DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25  KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
           +WSQVAV+ VN+ G D   P G VL VD L I+P++GA  L   D T P    R++ +L 
Sbjct: 85  AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
             + DV+LSDMAPNATG R++DHD +  L + ++       +PG   L K W G    +L
Sbjct: 145 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
           +  +T  +  V+I+KP +SR  S+E++ L   + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A7IDJ5|RLME_XANP2 Ribosomal RNA large subunit methyltransferase E OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rlmE PE=3 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 134/216 (62%), Gaps = 7/216 (3%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           +G+  SS  WL+RQ  DPYV +AK+E +R R+AFKL+E+D K + L+ G++++D GAAPG
Sbjct: 21  RGRTTSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKARLLKRGMRIVDLGAAPG 80

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
            WSQVA K +       ++  G ++++D L I PI G V  ++ DF  PD  +RL+ +L 
Sbjct: 81  GWSQVAAKKIG-----LEEGLGKIVAIDLLEIEPIPG-VAFAQMDFLAPDAPERLIAML- 133

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
             + D+V+SDMA NATG ++ DH  I  L    + FA     PG   L K+  G     L
Sbjct: 134 GGQADLVMSDMAANATGHKKTDHLRIVGLVELAVEFARQVLAPGGTFLAKVIQGGMEATL 193

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
              + R ++QV+ +KP +SR+ SAEL++L  GF+G+
Sbjct: 194 LADLKRDFTQVRHVKPAASRADSAELYVLATGFRGE 229

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

>sp|A8II77|RLME_AZOC5 Ribosomal RNA large subunit methyltransferase E OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rlmE PE=3 SV=1

 Score =  166 bits (421), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 7/215 (3%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           + +  SS  WL+RQ  DPYV +AK+E +R R+AFKL+E+D K+  L+ G++++D GAAPG
Sbjct: 21  RTRSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKLHVLKRGMRIVDLGAAPG 80

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
            WSQVA K +      + + +G ++++D L +  + G V+ ++ DF  P   +RL  +L 
Sbjct: 81  GWSQVAAKKIG-----AAEGQGKIVAIDLLEMDAVTG-VMFAQMDFLDPTAPERLFAML- 133

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
           D K D+V+SDMA N TG ++ DH  I  L      FA     PG   + K++ G     L
Sbjct: 134 DGKADLVMSDMAANTTGHKKTDHLKIIALVELAADFARQVLAPGGAFIAKVFQGGTEGTL 193

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
              + R Y+QV+ LKP +SR+ SAEL+L+  GF+G
Sbjct: 194 LADLKRDYAQVRHLKPAASRADSAELYLVATGFRG 228

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

>sp|Q164M8|RLME_ROSDO Ribosomal RNA large subunit methyltransferase E OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rlmE PE=3 SV=1

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 132/219 (60%), Gaps = 2/219 (0%)

Query: 11  EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
           +  +G+  SS  WL+RQ  DPYV++A+ E YR R+A+K+LE+D + +FL PG +V+D G 
Sbjct: 23  KTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYKILELDDRFRFLVPGARVVDLGC 82

Query: 71  APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
           APG W QVAVK VN+ G  + + +G VL VD   + PI GA  L + DF   D  D  V 
Sbjct: 83  APGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPIAGA-TLYQLDFMADDA-DEQVR 140

Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
           +    K DVV+SDMA +++G ++ DH  I  L  A   FA    + G   + K+  G   
Sbjct: 141 VWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAE 200

Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
            +L++ + + +++V  +KPP+SR  S+E F++  GF+ K
Sbjct: 201 GELQKLLKQRFAKVANIKPPASRQDSSEKFVVATGFRAK 239

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

>sp|A1B962|RLME_PARDP Ribosomal RNA large subunit methyltransferase E OS=Paracoccus denitrificans (strain Pd 1222) GN=rlmE PE=3 SV=1

 Score =  164 bits (414), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 2/216 (0%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           KG+  SS LWL+RQ  DPYV +AK+E YR R+A+K+LE+D K +FL PG +V+D G APG
Sbjct: 29  KGRKLSSTLWLERQLNDPYVARAKREGYRGRAAYKILELDDKYRFLVPGARVVDLGCAPG 88

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
            W QVAV  VN+ G  S +  G VL VD   + PI GA +  + DF      +++   L 
Sbjct: 89  GWCQVAVARVNALGDKSGKKVGRVLGVDLQEVDPIPGAEI-HQLDFLSEGADEQVKAWL- 146

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
             + DVV+SDMA  ++G +  DH  I  L  A  + A    +PG   + K+  G    ++
Sbjct: 147 GGRADVVMSDMAAASSGHKGTDHLRIVALVEAAAQLAFDVLEPGGTFVAKVLAGGAENEM 206

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
           +  + R + +V  +KPP+SRS S+E F++ +GF+G+
Sbjct: 207 QAMLKRNFRKVANVKPPASRSDSSEKFVVAQGFRGR 242

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Paracoccus denitrificans (strain Pd 1222) (taxid: 318586)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

>sp|A7HSA5|RLME_PARL1 Ribosomal RNA large subunit methyltransferase E OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rlmE PE=3 SV=1

 Score =  163 bits (413), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 4/216 (1%)

Query: 16  KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
           + +SS  WL+RQ  DPYV  AK+E YR R+AFKL EID K +FL+PG +V+D G APG W
Sbjct: 32  RSNSSTRWLQRQLNDPYVHAAKREGYRSRAAFKLAEIDDKYRFLKPGGRVVDLGCAPGGW 91

Query: 76  SQVAVKLVNSHGYD--SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
            QVAV  V + G D  ++   G V+ +D L + P+ GA +L + DF      D++  +L 
Sbjct: 92  CQVAVARVKAEGGDAGAEGRHGRVIGLDYLEMDPVPGATIL-QLDFLSEGADDQVKELLA 150

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
            +  DVVLSDMA   TG ++ DH  I  L      FA     PG   L K+  G    +L
Sbjct: 151 GEA-DVVLSDMAAPTTGHKQTDHMRIMSLCEIAAHFATEVLAPGGTFLAKVLRGGTENEL 209

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
              + + +  V+ +KP +SR+ SAE+++L +GFKG+
Sbjct: 210 LVLLKQHFKTVRHVKPKASRADSAEMYVLAQGFKGR 245

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

>sp|Q3J2Q5|RLME_RHOS4 Ribosomal RNA large subunit methyltransferase E OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rlmE PE=3 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 2/216 (0%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           KG+  SS LWL+RQ  DPYV +AKKE YR R+A+K+LE+D K  FL+PG +V+D G APG
Sbjct: 22  KGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCAPG 81

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
            W QVAV+ VN+ G    +P+G VL VD   + PI GA +  + DF   D  +++   L 
Sbjct: 82  GWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGWL- 139

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
             + DVV+SDMA  A+G +  DH  I  L  A   FA    + G   + K+  G    +L
Sbjct: 140 GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAENEL 199

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
           +  + + +++V  +KPP+SR+ S+E F++  GF+G+
Sbjct: 200 QALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

>sp|A3PJK8|RLME_RHOS1 Ribosomal RNA large subunit methyltransferase E OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmE PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 2/218 (0%)

Query: 12  VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
             KG+  SS LWL+RQ  DPYV +AKKE YR R+A+K+LE+D K  FL+PG +V+D G A
Sbjct: 20  TAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCA 79

Query: 72  PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
           PG W QVAV+ VN+ G    +P+G VL VD   + PI GA +  + DF   D  +++   
Sbjct: 80  PGGWCQVAVERVNALGQRKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGW 138

Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
           L   + DVV+SDMA  A+G +  DH  I  L  A   FA    + G   + K+  G    
Sbjct: 139 L-GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAEN 197

Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
           +L+  + + +++V  +KPP+SR+ S+E F++  GF+G+
Sbjct: 198 ELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235

Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
322794006	246	hypothetical protein SINV_09000 [Solenop	0.991	0.922	0.558	8e-72
332027855	246	Putative ribosomal RNA methyltransferase	0.991	0.922	0.541	3e-67
307174434	246	Putative ribosomal RNA methyltransferase	0.956	0.890	0.560	7e-67
307202661	246	Putative ribosomal RNA methyltransferase	0.956	0.890	0.542	1e-65
91089457	228	PREDICTED: similar to cell division prot	0.917	0.921	0.585	3e-65
345487817	248	PREDICTED: putative ribosomal RNA methyl	0.960	0.887	0.533	2e-64
383853926	251	PREDICTED: putative ribosomal RNA methyl	0.951	0.868	0.531	5e-63
170030475	239	ribosomal RNA large subunit methyltransf	0.938	0.899	0.539	5e-63
380028862	251	PREDICTED: putative ribosomal RNA methyl	0.991	0.904	0.497	2e-62
328697206	234	PREDICTED: putative ribosomal RNA methyl	0.930	0.910	0.530	4e-62

>gi|322794006|gb|EFZ17244.1| hypothetical protein SINV_09000 [Solenopsis invicta]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 129/231 (55%), Positives = 164/231 (70%), Gaps = 4/231 (1%)

Query: 1   NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
           ++ T+   LKE P   KGK HSS LWL RQ  DPYV+KAK+E YRCRSAFKLLEI+ + K
Sbjct: 13  SVHTSSALLKETPRNLKGKKHSSQLWLARQLRDPYVEKAKQEKYRCRSAFKLLEINERFK 72

Query: 58  FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
              PGL V+DCGAAPGSW+QVA  L N+HG   K   G V ++DKLP YP++GA VL   
Sbjct: 73  IFSPGLTVVDCGAAPGSWTQVATNLTNAHG-KKKGRIGRVYAIDKLPFYPVEGATVLGNM 131

Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
           DFT P  Q+ L+ +L+ DK+DVVLSDMAPNATGM+EMDHD I  LA A +RFA+  SK  
Sbjct: 132 DFTSPKTQETLIELLQGDKVDVVLSDMAPNATGMKEMDHDNIILLAYAALRFALQISKIN 191

Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
              +IK+WDG    Q E+++++FY+ +KI++P ++R  S E F L RGFKG
Sbjct: 192 GTLVIKVWDGGKAQQFEQNLSKFYNSIKIIRPDATRDESTEKFFLARGFKG 242

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027855|gb|EGI67913.1| Putative ribosomal RNA methyltransferase [Acromyrmex echinatior]

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 162/231 (70%), Gaps = 4/231 (1%)

Query: 1   NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
           ++ T+G  LKE P   K K HSS LWL+RQ  DPYV+KAK+E YRCRSAFKLLEI+ + K
Sbjct: 13  SLHTSGTLLKETPRNLKNKKHSSQLWLERQLRDPYVEKAKQEKYRCRSAFKLLEINERFK 72

Query: 58  FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
            L PGL V+DCGAAPGSW+QVA  L N+ G   + P G V +VDKLP YP++GA VL   
Sbjct: 73  ILSPGLTVVDCGAAPGSWTQVATNLTNAGG-KKEGPVGRVYAVDKLPFYPVEGATVLGNM 131

Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
           DFT    Q+ L  +L+ DK+DVVLSDMAPNA+G+RE+DHD I  LA A +RFA+  SK  
Sbjct: 132 DFTNIKTQETLSKLLQGDKVDVVLSDMAPNASGVREIDHDNIMLLAYAALRFALQISKVQ 191

Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           +  ++KIWDG    Q E+++ +FY+ V+ ++P ++R  S E F L R FKG
Sbjct: 192 STFVVKIWDGGKTQQFEQNLLKFYNSVRAIRPDATRDESTETFFLARRFKG 242

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174434|gb|EFN64935.1| Putative ribosomal RNA methyltransferase CG11447 [Camponotus floridanus]

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 125/223 (56%), Positives = 158/223 (70%), Gaps = 4/223 (1%)

Query: 9   LKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
           LKE P   KGK HSS LWL RQ  DPYV+KAK+ENYRCRSAFKLL+I+ K K   PGL V
Sbjct: 21  LKETPRNLKGKKHSSQLWLMRQIRDPYVEKAKQENYRCRSAFKLLQINEKYKIFCPGLTV 80

Query: 66  LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
           +DCGAAPGSW+QVA  L NSH   S+ P G V ++DKLP +P++GA VL   DFT    Q
Sbjct: 81  IDCGAAPGSWTQVATNLTNSHA-KSQGPIGKVYAIDKLPFFPVEGATVLGNMDFTITKTQ 139

Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
           + L+ +L+  K DVVLSDMAPNA+G+R +DHD I  LA A ++FA+  +K     +IK+W
Sbjct: 140 ETLLALLQGKKADVVLSDMAPNASGIRAIDHDNIILLAYAALKFALQITKIHGTLVIKVW 199

Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           DG    +LE+++ RFY+ VKI+KP ++R  S E F L RGFKG
Sbjct: 200 DGGKSQELEQNLLRFYNNVKIVKPDATRDESTEKFFLARGFKG 242

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202661|gb|EFN81981.1| Putative ribosomal RNA methyltransferase CG11447 [Harpegnathos saltator]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/223 (54%), Positives = 156/223 (69%), Gaps = 4/223 (1%)

Query: 9   LKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
           LKE P   K K HSS  WL RQ  DPYV+KAK+E YRCRSAFKLLEI  +    +PG  V
Sbjct: 21  LKETPRNLKHKKHSSQQWLVRQLRDPYVEKAKQERYRCRSAFKLLEIQERFNIFKPGQVV 80

Query: 66  LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
           +DCGAAPGSW++VAV  +N+ G       G V +VDKLP YP++GAVVLS  DFT    Q
Sbjct: 81  VDCGAAPGSWTEVAVNAINASGKKDGSV-GKVFAVDKLPFYPVEGAVVLSGMDFTSASTQ 139

Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
           + L   ++DDK DVVLSDMAPNA+G+RE+DHD I  LA + ++FA+  +KP    ++KIW
Sbjct: 140 EELRKTMQDDKADVVLSDMAPNASGVREIDHDNIIMLAYSAMKFALQMNKPDGTFVVKIW 199

Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           DGR   QLE+ + RFY++V+I++P ++R  S E+F L R FKG
Sbjct: 200 DGRKTQQLEQDMLRFYNRVRIVRPNATRDESTEMFFLARDFKG 242

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089457|ref|XP_968154.1| PREDICTED: similar to cell division protein ftsj [Tribolium castaneum] gi|270012568|gb|EFA09016.1| hypothetical protein TcasGA2_TC006724 [Tribolium castaneum]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 152/210 (72%)

Query: 19  SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
           SSH WL RQ  DPYV+KAK  NYRCRSAFKLLEID + K LRPG  V+DCGAAPGSWSQV
Sbjct: 16  SSHEWLSRQLTDPYVEKAKIMNYRCRSAFKLLEIDDRFKILRPGFVVIDCGAAPGSWSQV 75

Query: 79  AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
           AV+ VNS G D KQ +GLVLS+DK  I+ I+GA +L   DFT    Q+ LV +L   K D
Sbjct: 76  AVRRVNSDGSDPKQAQGLVLSIDKQQIFAINGATILGNLDFTDVKSQEILVEVLGGKKAD 135

Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
            V+SDMAPNA+G +E+D++ I +L  +V+RFAV  S+ GA  ++K+W      QLE   +
Sbjct: 136 AVISDMAPNASGFKELDNENIIKLCYSVLRFAVQNSRAGACLVVKLWQCGQAKQLENDFS 195

Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           +FY+ VK +KP SSRS SAE+FLLGR FKG
Sbjct: 196 KFYASVKYVKPNSSRSDSAEIFLLGRDFKG 225

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487817|ref|XP_003425762.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like [Nasonia vitripennis]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/223 (53%), Positives = 157/223 (70%), Gaps = 3/223 (1%)

Query: 9   LKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
           LKE P   KGK HSS  WL RQF DPYV+KA++ENYRCRSAFKLLEI+ K + L PGL V
Sbjct: 19  LKEKPTNLKGKKHSSQQWLSRQFKDPYVEKARQENYRCRSAFKLLEINRKHRILSPGLHV 78

Query: 66  LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
           +DCGAAPGSW+QVA +L NSHG    +  G V+++DKLPI+PI+GA V    DFT  D Q
Sbjct: 79  VDCGAAPGSWTQVATQLTNSHGKMLGEQVGKVIAIDKLPIHPIEGATVYGNLDFTTEDAQ 138

Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
           + L   L    ++VV+SDMAPNA+G+R++DH+ I +LA    +FA+  S      ++K+W
Sbjct: 139 NILKAALGGKFVEVVMSDMAPNASGVRDLDHENIIKLAYMAFKFAIEVSCYEGTFIVKVW 198

Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           DG   P+LEE + RF+  VKI +P ++R  S+E F++ RGFKG
Sbjct: 199 DGHKCPKLEEDLARFFRNVKIARPQATRDESSEKFIIARGFKG 241

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853926|ref|XP_003702473.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like [Megachile rotundata]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 156/222 (70%), Gaps = 4/222 (1%)

Query: 10  KEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVL 66
           +E P   KGK HSS LWL RQ  DPYV+KAKKENYRCRSAFKLLEI+ + K L+PG  V+
Sbjct: 22  RETPRNLKGKKHSSQLWLTRQLKDPYVEKAKKENYRCRSAFKLLEINERFKILKPGQIVI 81

Query: 67  DCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQD 126
           DCGAAPGSW+QVA+KL N++G ++ +  G V+ +DK+P+YPI+GA +L   DFT    Q 
Sbjct: 82  DCGAAPGSWTQVAIKLTNANGVNN-EAVGTVIGIDKIPMYPIEGATLLGNMDFTTEASQK 140

Query: 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186
            L+ +LKD K DVVLSDMAPNA+G+R++DH  I +LA    +FA+  +      + KIWD
Sbjct: 141 ELLKLLKDRKADVVLSDMAPNASGVRDIDHVNIIKLAYLAFKFALQTTCIDGTFVCKIWD 200

Query: 187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           G    QLE+ + +FY  V+ ++P ++R  S E FLL  GFKG
Sbjct: 201 GGQSQQLEQDLLKFYKHVRNVRPQATRDDSTEKFLLATGFKG 242

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030475|ref|XP_001843114.1| ribosomal RNA large subunit methyltransferase J [Culex quinquefasciatus] gi|167867355|gb|EDS30738.1| ribosomal RNA large subunit methyltransferase J [Culex quinquefasciatus]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 150/215 (69%)

Query: 14  KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
           KGK  SS  WL RQ  DP+V++AK  NYRCRSAFKLLEID K   ++PG  V+DCGAAPG
Sbjct: 22  KGKKKSSQEWLTRQLNDPFVERAKMANYRCRSAFKLLEIDQKYNIIKPGFTVIDCGAAPG 81

Query: 74  SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
           SWSQ+AVK  N+ G    +PKG V+ VD L IYPI  A  L   DFT+ + QD++ ++L 
Sbjct: 82  SWSQIAVKQSNADGAAPGKPKGTVIGVDLLQIYPIAHATTLGNTDFTRTESQDKIRSLLG 141

Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
           + ++D VLSDMAPNATG+R +D + I  L  +V+RFA+  S P A  L+K+WD    P L
Sbjct: 142 EKRIDCVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLMKVWDNGEVPAL 201

Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           E++I R+Y QVK +KP +SR+ SAE F+L RGF G
Sbjct: 202 EKNIQRYYQQVKRIKPRASRADSAENFVLARGFVG 236

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028862|ref|XP_003698104.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like [Apis florea]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 158/231 (68%), Gaps = 4/231 (1%)

Query: 1   NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
           N+ T     +E+P   KGK HSS LWL RQ  DPYV+ AK+ENYRCRSA+KLLEI+ + K
Sbjct: 13  NLHTYSTLFREIPQNLKGKKHSSQLWLTRQIQDPYVELAKRENYRCRSAYKLLEINERFK 72

Query: 58  FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
            L+PG  V+DCGAAPGSW+QVAVK  N++    K   G VL +DK PIYPI+GA +L+  
Sbjct: 73  ILKPGKIVIDCGAAPGSWTQVAVKFTNANA-KQKSAIGTVLGIDKQPIYPIEGATLLNGM 131

Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
           DFT    Q++++ IL   K++V LSDMAPNA+G+R++DH+ I QL  + ++FA+      
Sbjct: 132 DFTAATSQNKILNILNGQKVNVFLSDMAPNASGIRDLDHENIMQLVYSALKFALQIIHIN 191

Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
              + K+WDG+   QLE+ +TRF+  VK ++P ++R  S E FL+ R FKG
Sbjct: 192 GIFVCKLWDGKKSLQLEKDLTRFFKYVKNIRPKATRDESTEKFLIAREFKG 242

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697206|ref|XP_001950144.2| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like [Acyrthosiphon pisum]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 154/213 (72%)

Query: 16  KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
           ++HSS  WL RQ  DPYV+KAK ++YRCRSAFKLL++D +   L+PGL V+D GAAPGSW
Sbjct: 18  RNHSSKEWLLRQKTDPYVEKAKIKSYRCRSAFKLLQMDDRFSILKPGLCVIDIGAAPGSW 77

Query: 76  SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
           SQVA   +NS+  +S+ P GL++ +D   +YPI+G  +L   DFT P    ++  +L + 
Sbjct: 78  SQVAASRINSNATNSEIPTGLLIGIDLQQMYPIEGVTLLGNSDFTSPKTWQKIKELLNNR 137

Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
            +DVVLSDMAPNA+G++ +DHDLI +LA +V++FAV  S  GA CLIKI DG    ++E 
Sbjct: 138 PIDVVLSDMAPNASGVKHLDHDLIIKLAYSVVKFAVLNSNVGATCLIKILDGNQNAKIEN 197

Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
           ++ +FYS VK +KP +SRS SAE +LL RGFKG
Sbjct: 198 TLIKFYSNVKFVKPEASRSDSAEKYLLARGFKG 230

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
FB|FBgn0038737	250	CG11447 [Drosophila melanogast	0.973	0.892	0.495	1e-52
MGI|MGI:1915267	246	Ftsj2 "FtsJ homolog 2 (E. coli	0.938	0.873	0.451	2.5e-49
UNIPROTKB|F1NZH9	240	FTSJ2 "Uncharacterized protein	0.943	0.9	0.458	3.2e-49
RGD|1305944	246	Ftsj2 "FtsJ RNA methyltransfer	0.943	0.878	0.453	4.1e-49
UNIPROTKB|Q9UI43	246	FTSJ2 "Putative ribosomal RNA	0.943	0.878	0.439	1.8e-48
UNIPROTKB|E2R8N4	246	FTSJ2 "Uncharacterized protein	0.934	0.869	0.448	4.2e-47
UNIPROTKB|F1MLL9	244	FTSJ2 "Uncharacterized protein	0.943	0.885	0.430	3.8e-46
TIGR_CMR|SPO_1858	233	SPO_1858 "ribosomal RNA large	0.956	0.939	0.382	3.6e-34
WB|WBGene00009735	214	F45G2.9 [Caenorhabditis elegan	0.860	0.920	0.400	2e-31
TIGR_CMR|CBU_1353	212	CBU_1353 "ribosomal RNA large	0.873	0.943	0.370	3.8e-30

FB|FBgn0038737 CG11447 [Drosophila melanogaster (taxid:7227)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 112/226 (49%), Positives = 142/226 (62%)

Query:     6 GPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
             G   K+ P   KG+  SS  WL RQ ADPYV+KA+  NYRCRSAFKLLEID K   LRPG
Sbjct:    21 GKYAKQQPRNLKGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPG 80

Query:    63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
               VL+CGAAPGSW+QVAV+  N++G   + P+G V S+D L  + + GA +    DFT  
Sbjct:    81 DTVLECGAAPGSWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSS 140

Query:   123 DIQDRLVTIXXXXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
               Q RL             SDMAPNATG+R +D + IT L   V+RFA+  S P A  ++
Sbjct:   141 LAQKRLREALQDRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV 200

Query:   183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
             K+WD  + P+LE  + RFY +VK +KP +SR  SAE FL+ R FKG
Sbjct:   201 KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246

GO:0008650 "rRNA (uridine-2'-O-)-methyltransferase activity" evidence=ISS

GO:0001510 "RNA methylation" evidence=IEA

MGI|MGI:1915267 Ftsj2 "FtsJ homolog 2 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 97/215 (45%), Positives = 137/215 (63%)

Query:    14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
             +G+  + HLWL R   DP+V+ AK E+YRCRSAFKLLE++ K + LRPGL+VLDCGAAPG
Sbjct:    25 RGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGLRVLDCGAAPG 84

Query:    74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXX 133
             +WSQVAV+ VN+ G DS  P G VL VD L I+P+ GA  L   D T P    +++ +  
Sbjct:    85 AWSQVAVQRVNATGADSSSPVGFVLGVDLLHIFPLAGATFLCPADVTDPRTFQKILELLP 144

Query:   134 XXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
                     SDMAPNATG+R++DHD +  L + ++  AV    PG   L K W G     L
Sbjct:   145 SRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLL 204

Query:   194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
             ++ +T+ +   +++KP +SR  S+E++LL   ++G
Sbjct:   205 QKRLTQEFQSTRVVKPEASRKESSEVYLLATQYRG 239

GO:0001510 "RNA methylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006364 "rRNA processing" evidence=NAS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0031167 "rRNA methylation" evidence=NAS

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1NZH9 FTSJ2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 99/216 (45%), Positives = 136/216 (62%)

Query:    14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
             K K  + + WL+RQ+ DP+V+ AK+++YRCRSAFKLLEID K+  LRPGL VLDCGAAPG
Sbjct:    25 KKKTATENWWLERQWRDPFVKAAKQQHYRCRSAFKLLEIDDKLHILRPGLSVLDCGAAPG 84

Query:    74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXX 133
             +WSQVAV+ VN+ G D   P G V+ VD L I P++GAV LS+ D T P  Q  +  +  
Sbjct:    85 AWSQVAVERVNALGTDPAAPTGFVIGVDLLRISPLEGAVFLSQADITDPGTQRAIQNLLP 144

Query:   134 XXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
                     SDMAPNATG++E+DH  +  L + ++  + +  KP    L K WDG     L
Sbjct:   145 AEKVDVILSDMAPNATGIKELDHQKLISLCLGLVNLSQSILKPKGTMLCKFWDGHESRVL 204

Query:   194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
             +  +   +  V+ +KP +SR  S+E + L R +KGK
Sbjct:   205 QNKLKEQFQDVRTIKPQASRKDSSESYYLARLYKGK 240

GO:0001510 "RNA methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1305944 Ftsj2 "FtsJ RNA methyltransferase homolog 2 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 98/216 (45%), Positives = 135/216 (62%)

Query:    14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
             KG+  + HLWL R   DP+V+ AK E+YRCRSAFKLLE++ K   LRPGL+VLDCGAAPG
Sbjct:    25 KGRTGAEHLWLMRHLKDPFVKAAKAESYRCRSAFKLLEMNEKHHILRPGLRVLDCGAAPG 84

Query:    74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXX 133
             +WSQVAV+ VN+ G DS  P G VL VD L ++P+ GA  L   D T P    R++ +  
Sbjct:    85 AWSQVAVQSVNATGADSSSPMGFVLGVDLLHMFPLAGATFLCPADVTDPRTFQRILELLP 144

Query:   134 XXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
                     SDMAPNATG+R++DHD +  L + ++  AV    PG   L K W G     L
Sbjct:   145 RRRADVILSDMAPNATGIRDLDHDRLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLL 204

Query:   194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
             ++ + + +   +++KP +SR  SAE++LL   + G+
Sbjct:   205 QKRLAQEFRSTRVVKPEASRKESAEVYLLATQYHGR 240

GO:0001510 "RNA methylation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q9UI43 FTSJ2 "Putative ribosomal RNA methyltransferase 2" [Homo sapiens (taxid:9606)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 95/216 (43%), Positives = 133/216 (61%)

Query:    14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
             K +  + HLWL R   DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct:    25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84

Query:    74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXX 133
             +WSQVAV+ VN+ G D   P G VL VD L I+P++GA  L   D T P    R++ +  
Sbjct:    85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144

Query:   134 XXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
                     SDMAPNATG R++DHD +  L + ++       +PG   L K W G    +L
Sbjct:   145 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204

Query:   194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
             +  +T  +  V+I+KP +SR  S+E++ L   + G+
Sbjct:   205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0031167 "rRNA methylation" evidence=NAS

GO:0008650 "rRNA (uridine-2'-O-)-methyltransferase activity" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0006364 "rRNA processing" evidence=NAS

UNIPROTKB|E2R8N4 FTSJ2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 96/214 (44%), Positives = 131/214 (61%)

Query:    14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
             KG+  + HLWL R   DPYV+ AK E+YRCRSAFKLLE+D + + LRPGL+VLDCGAAPG
Sbjct:    25 KGRTGAEHLWLTRHLKDPYVKAAKVESYRCRSAFKLLEMDERHRILRPGLRVLDCGAAPG 84

Query:    74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXX 133
             +WSQVAV+ VN+ G D   P G VL VD L I+P++GA  L   D T P    R+  +  
Sbjct:    85 AWSQVAVQRVNAAGTDPGTPVGFVLGVDLLHIFPLEGATFLCPADVTDPGTLQRIQELLP 144

Query:   134 XXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
                     SDMAPNATG+  +DHD + +L + ++  A     PG   L K W G     L
Sbjct:   145 GGRADVILSDMAPNATGIHSLDHDRLIRLCLFLLDLAADVLHPGGTFLCKTWAGSQSLAL 204

Query:   194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
             ++ +T  +   + +KP +SR  S+E++LL   ++
Sbjct:   205 QKRLTGQFQSTRTIKPRASRKESSEVYLLATQYQ 238

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

UNIPROTKB|F1MLL9 FTSJ2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 93/216 (43%), Positives = 133/216 (61%)

Query:    14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
             K +  + HLWL R   DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct:    25 KSRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPGLRVLDCGAAPG 84

Query:    74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXX 133
             +WSQVAV+ VN+ G D   P G VL VD L I+P++GA  L   D T P    ++  +  
Sbjct:    85 AWSQVAVQRVNAAGTDPSAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFRKIQELLP 144

Query:   134 XXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
                     SDMAPNATG+R +DHD +  L ++++        P    L K W G    +L
Sbjct:   145 GGRADVILSDMAPNATGIRSLDHDRLISLCLSLLDMVPDVLHPRGTFLCKTWAGSQSQRL 204

Query:   194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
             ++ +T+ +   + +KP +SR  S+E++LL   ++GK
Sbjct:   205 QKRLTQEFQNTRTVKPEASRKESSEVYLLATQYRGK 240

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

TIGR_CMR|SPO_1858 SPO_1858 "ribosomal RNA large subunit methyltransferase J" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 85/222 (38%), Positives = 127/222 (57%)

Query:     8 KLK-EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVL 66
             K+K +  +G+  SS  WL+RQ  DPYV++A+ E YR R+AFK+LE+D K +FL PG +V+
Sbjct:    14 KVKVKTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKILELDEKYRFLVPGARVV 73

Query:    67 DCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQD 126
             D G APG W QVAVK VN+ G  S +  G VL +D   + PI GA +  + DF      D
Sbjct:    74 DLGCAPGGWCQVAVKRVNALGERSDKRVGRVLGIDLQEVEPIAGAEI-HQLDFLDDGADD 132

Query:   127 RLVTIXXXXXXXXXXSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186
             R+             SDMA +++G ++ DH  I  L  A    A    + G   + K+  
Sbjct:   133 RIKE-WLGGKADVVMSDMAASSSGHKQTDHMRIIALCEAAAYLAFDVLEEGGTFVAKVLA 191

Query:   187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
             G     L++ + + +++V  +KPP+SRS S+E F++  GF+G
Sbjct:   192 GGAEGDLQKLLKQKFTKVANVKPPASRSDSSEKFVVATGFRG 233

GO:0000154 "rRNA modification" evidence=ISS

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

WB|WBGene00009735 F45G2.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 85/212 (40%), Positives = 114/212 (53%)

Query:    21 HLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAV 80
             H +++RQ  D +  KA++ NYR RSAFKL+EI+ K KFL+P   V+D G APGSW QV V
Sbjct:    12 HKYIQRQSTDEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVV 71

Query:    81 KLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXXXXXXXXX 140
             +         K P G    VD   + PI GA +LS  D T P ++ ++            
Sbjct:    72 Q---------KCPNGYASGVDLQNVLPIRGADILSLSDITDPAVKLKIREKLAHRQVDVV 122

Query:   141 XSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYS----KPGADCLIKIWDGRNRPQLEE 195
              SDMAPN TG    DH  + +L  +V R F+V       K G   L KIWDG  R +   
Sbjct:   123 LSDMAPNPTGDNATDHLRLIELCRSVFRLFSVENEIELVKNGV-YLCKIWDGSARAEFVR 181

Query:   196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
              ++  +S VK +KP + R +SAEL+L  R FK
Sbjct:   182 ELSDRFSTVKTVKPTACRDNSAELYLFCRNFK 213

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0001510 "RNA methylation" evidence=IEA

TIGR_CMR|CBU_1353 CBU_1353 "ribosomal RNA large subunit methyltransferase J" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 80/216 (37%), Positives = 118/216 (54%)

Query:    18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ 77
             HS   WL+    DPYV++AKKE Y  R+A+KLLEI  K K  +P + V+D GAAPG WSQ
Sbjct:     3 HSKR-WLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQ 61

Query:    78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-IDGAVVLSKCDFTQPDIQDRLVTIXXXXX 136
             VA  LV         PKG+V+++D LP+   +D  V+  + DF +P+I ++L  I     
Sbjct:    62 VAKDLVG--------PKGVVIAIDLLPMQSMLD--VIFIQGDFNEPEIFNQLEAIVAKKT 111

Query:   137 XXXXX----SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
                      SDMAPN +G++ +D      L       A      G   L+K++ G    +
Sbjct:   112 LTGQVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDR 171

Query:   193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
                ++  +++QVK LKP +SRS S+E+++L   F G
Sbjct:   172 FLINLRPYFNQVKFLKPSASRSRSSEIYILAGEFLG 207

GO:0000154 "rRNA modification" evidence=ISS

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3PJK8	RLME_RHOS1	2, ., 1, ., 1, ., 1, 6, 6	0.4128	0.9432	0.8852	yes	N/A
A7IDJ5	RLME_XANP2	2, ., 1, ., 1, ., 1, 6, 6	0.4120	0.9126	0.8228	yes	N/A
B7V1G4	RLME_PSEA8	2, ., 1, ., 1, ., 1, 6, 6	0.3738	0.8951	0.9903	yes	N/A
Q07LH9	RLME_RHOP5	2, ., 1, ., 1, ., 1, 6, 6	0.4190	0.8864	0.8638	yes	N/A
Q1QKB6	RLME_NITHX	2, ., 1, ., 1, ., 1, 6, 6	0.3952	0.8864	0.8903	yes	N/A
Q0AQH3	RLME_MARMM	2, ., 1, ., 1, ., 1, 6, 6	0.4093	0.8864	0.7275	yes	N/A
B2HXD3	RLME_ACIBC	2, ., 1, ., 1, ., 1, 6, 6	0.3875	0.8733	0.9259	yes	N/A
Q4KIG3	RLME_PSEF5	2, ., 1, ., 1, ., 1, 6, 6	0.3691	0.8951	0.9808	yes	N/A
Q9UI43	RRMJ2_HUMAN	2, ., 1, ., 1, ., -	0.4583	0.9432	0.8780	yes	N/A
Q9CPY0	RRMJ2_MOUSE	2, ., 1, ., 1, ., -	0.4697	0.9388	0.8739	yes	N/A
B0VEE9	RLME_ACIBY	2, ., 1, ., 1, ., 1, 6, 6	0.3875	0.8733	0.9259	yes	N/A
A7HSA5	RLME_PARL1	2, ., 1, ., 1, ., 1, 6, 6	0.4120	0.9257	0.8346	yes	N/A
A5EHP2	RLME_BRASB	2, ., 1, ., 1, ., 1, 6, 6	0.3920	0.9519	0.9437	yes	N/A
Q11L51	RLME_MESSB	2, ., 1, ., 1, ., 1, 6, 6	0.4259	0.9126	0.8893	yes	N/A
A3M851	RLME_ACIBT	2, ., 1, ., 1, ., 1, 6, 6	0.3875	0.8733	0.9259	yes	N/A
B7I636	RLME_ACIB5	2, ., 1, ., 1, ., 1, 6, 6	0.3875	0.8733	0.9259	yes	N/A
Q5FNQ1	RLME_GLUOX	2, ., 1, ., 1, ., 1, 6, 6	0.3878	0.8820	0.7537	yes	N/A
Q89N72	RLME_BRAJA	2, ., 1, ., 1, ., 1, 6, 6	0.4140	0.9519	0.9561	yes	N/A
Q8FVY1	RLME_BRUSU	2, ., 1, ., 1, ., 1, 6, 6	0.4	0.8864	0.8458	yes	N/A
A1URN3	RLME_BARBK	2, ., 1, ., 1, ., 1, 6, 6	0.4075	0.8908	0.8535	yes	N/A
Q5GS59	RLME_WOLTR	2, ., 1, ., 1, ., 1, 6, 6	0.3926	0.8646	0.9166	yes	N/A
Q164M8	RLME_ROSDO	2, ., 1, ., 1, ., 1, 6, 6	0.3972	0.9475	0.9041	yes	N/A
Q9VDT6	RRMJ1_DROME	2, ., 1, ., 1, ., -	0.5302	0.9388	0.86	yes	N/A
Q0BT08	RLME_GRABC	2, ., 1, ., 1, ., 1, 6, 6	0.3788	0.9213	0.9173	yes	N/A
Q2IV68	RLME_RHOP2	2, ., 1, ., 1, ., 1, 6, 6	0.4095	0.8908	0.8644	yes	N/A
P95454	RLME_PSEAE	2, ., 1, ., 1, ., 1, 6, 6	0.3738	0.8951	0.9903	yes	N/A
Q92RT9	RLME_RHIME	2, ., 1, ., 1, ., 1, 6, 6	0.4185	0.9519	0.8897	yes	N/A
Q3SJR5	RLME_THIDA	2, ., 1, ., 1, ., 1, 6, 6	0.3935	0.8995	0.9363	yes	N/A
A4YSS3	RLME_BRASO	2, ., 1, ., 1, ., 1, 6, 6	0.3964	0.9519	0.9437	yes	N/A
A6U6F0	RLME_SINMW	2, ., 1, ., 1, ., 1, 6, 6	0.4140	0.9519	0.8897	yes	N/A
Q3J2Q5	RLME_RHOS4	2, ., 1, ., 1, ., 1, 6, 6	0.4166	0.9344	0.8770	yes	N/A
A8II77	RLME_AZOC5	2, ., 1, ., 1, ., 1, 6, 6	0.4	0.9082	0.8666	yes	N/A
Q138J5	RLME_RHOPS	2, ., 1, ., 1, ., 1, 6, 6	0.4190	0.8864	0.8638	yes	N/A
Q3SQN7	RLME_NITWN	2, ., 1, ., 1, ., 1, 6, 6	0.3952	0.8864	0.8826	yes	N/A
Q02FS0	RLME_PSEAB	2, ., 1, ., 1, ., 1, 6, 6	0.3738	0.8951	0.9903	yes	N/A
Q6N7Q9	RLME_RHOPA	2, ., 1, ., 1, ., 1, 6, 6	0.4142	0.8864	0.8565	yes	N/A
A9WYY2	RLME_BRUSI	2, ., 1, ., 1, ., 1, 6, 6	0.4	0.8864	0.8458	yes	N/A
O62251	RRMJ2_CAEEL	2, ., 1, ., 1, ., -	0.4150	0.8602	0.9205	yes	N/A
A1B962	RLME_PARDP	2, ., 1, ., 1, ., 1, 6, 6	0.4074	0.9344	0.8359	yes	N/A
C3MGQ4	RLME_RHISN	2, ., 1, ., 1, ., 1, 6, 6	0.4273	0.9519	0.8897	yes	N/A
B7GY18	RLME_ACIB3	2, ., 1, ., 1, ., 1, 6, 6	0.3875	0.8733	0.9259	yes	N/A
B8GNX9	RLME_THISH	2, ., 1, ., 1, ., 1, 6, 6	0.3867	0.8864	0.9806	yes	N/A
Q2W0P2	RLME_MAGSA	2, ., 1, ., 1, ., 1, 6, 6	0.4103	0.8864	0.8319	yes	N/A
A5VFI9	RLME_SPHWW	2, ., 1, ., 1, ., 1, 6, 6	0.3796	0.8951	0.8951	yes	N/A
B0VSM4	RLME_ACIBS	2, ., 1, ., 1, ., 1, 6, 6	0.3875	0.8733	0.9259	yes	N/A
A5VUZ8	RLME_BRUO2	2, ., 1, ., 1, ., 1, 6, 6	0.4	0.8864	0.8458	yes	N/A
B3QFD2	RLME_RHOPT	2, ., 1, ., 1, ., 1, 6, 6	0.4142	0.8864	0.8565	yes	N/A
A6X5L4	RLME_OCHA4	2, ., 1, ., 1, ., 1, 6, 6	0.4047	0.8864	0.8458	yes	N/A
Q5LSB0	RLME_RUEPO	2, ., 1, ., 1, ., 1, 6, 6	0.4036	0.9432	0.9270	yes	N/A
B1J262	RLME_PSEPW	2, ., 1, ., 1, ., 1, 6, 6	0.3802	0.8908	0.9807	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921
4th Layer	2.1.1.166	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	229
COG0293	205	COG0293, FtsJ, 23S rRNA methylase [Translation, ri	4e-71
pfam01728	177	pfam01728, FtsJ, FtsJ-like methyltransferase	2e-55
TIGR00438	188	TIGR00438, rrmJ, cell division protein FtsJ	8e-50
PRK11188	209	PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov	3e-47

>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

 Score =  215 bits (549), Expect = 4e-71
 Identities = 90/212 (42%), Positives = 127/212 (59%), Gaps = 9/212 (4%)

Query: 18  HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ 77
            SS  WL     DPY +KAKKE YR R+A+KLLE++ K K  +PG+ V+D GAAPG WSQ
Sbjct: 2   GSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQ 61

Query: 78  VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
           VA K +           G +++VD LP+ PI G V+  + D T  D  ++L+  L    +
Sbjct: 62  VAAKKLG--------AGGKIVAVDILPMKPIPG-VIFLQGDITDEDTLEKLLEALGGAPV 112

Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
           DVVLSDMAPN +G R +DH     L    + FA+   KPG   + K++ G +   L +++
Sbjct: 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL 172

Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
            R + +VKI KP +SR  S E++L+ +GFKGK
Sbjct: 173 RRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204

Length = 205

>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase

 Score =  174 bits (444), Expect = 2e-55
 Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 13/188 (6%)

Query: 41  YRCRSAFKLLEIDSKIKF-LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
           Y  R+A+KLLEID +       G  VLD GAAPG +SQV ++             G V++
Sbjct: 1   YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLERG---------GAGKVVA 51

Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI 159
           VD  P+ PI G   L + D T P+  ++L  +L   K+D+VLSD APN +G+   D  + 
Sbjct: 52  VDLGPMEPIQGVYFL-RGDITDPETLEKLRELLPG-KVDLVLSDGAPNVSGIENTDSFIS 109

Query: 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRN-RPQLEESITRFYSQVKILKPPSSRSHSAE 218
            QL +A +  A+   +PG + ++K++ G     +L E + + + +V I KPP+SR  S+E
Sbjct: 110 LQLVLAALLLALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPSSSE 169

Query: 219 LFLLGRGF 226
            +L+  GF
Sbjct: 170 EYLVCLGF 177

This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177

>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ

 Score =  160 bits (407), Expect = 8e-50
 Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 9/197 (4%)

Query: 30  DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
           D Y QKAKKE YR R++FKLL+++ K K ++PG  VLD GAAPG WSQVAV+ V      
Sbjct: 1   DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---- 56

Query: 90  SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
               KG V++VD  P+ PI+  V   + DFT  ++ +++   + DDK+DVV+SD APN +
Sbjct: 57  ----KGRVIAVDLQPMKPIEN-VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNIS 111

Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
           G  ++DH     L    +  A    KP  + ++K++ G    +    + + + +VK+ KP
Sbjct: 112 GYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKP 171

Query: 210 PSSRSHSAELFLLGRGF 226
            +SR  SAE++++ + F
Sbjct: 172 QASRKRSAEVYIVAKRF 188

Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188

>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional

 Score =  154 bits (391), Expect = 3e-47
 Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)

Query: 19  SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
           SS  WL+  F+D YVQ+A+K+  R R+ FKL EI    K  +PG+ V+D GAAPG WSQ 
Sbjct: 9   SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQY 68

Query: 79  AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
           AV  +          KG V++ D LP+ PI G   L + DF    +   L+  + D K+ 
Sbjct: 69  AVTQIGD--------KGRVIACDILPMDPIVGVDFL-QGDFRDELVLKALLERVGDSKVQ 119

Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
           VV+SDMAPN +G   +D      + +LA+ + R  +    PG   ++K++ G    +   
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVL---APGGSFVVKVFQGEGFDEYLR 176

Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
            I   +++VK+ KP SSR+ S E++++  G K 
Sbjct: 177 EIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209

Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG4589|consensus	232		100.0
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	100.0
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	100.0
KOG1099|consensus	294		100.0
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	100.0
KOG1098|consensus	780		100.0
TIGR00438	188	rrmJ cell division protein FtsJ.	100.0
KOG3673|consensus	845		99.72
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.65
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.64
PTZ00146	293	fibrillarin; Provisional	99.57
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
KOG3674|consensus	696		99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.52
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.52
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.51
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.5
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.48
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.48
PRK04266	226	fibrillarin; Provisional	99.48
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.47
KOG1540|consensus	296		99.45
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.43
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.43
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.43
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.42
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.41
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.41
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.4
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.39
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.39
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.38
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.38
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.38
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.37
PLN02244	340	tocopherol O-methyltransferase	99.37
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.36
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.36
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.36
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.35
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.35
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.34
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.34
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.34
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.34
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.33
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.33
PRK11207	197	tellurite resistance protein TehB; Provisional	99.32
PLN02490	340	MPBQ/MSBQ methyltransferase	99.32
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	99.32
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.31
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.31
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.31
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.31
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.3
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.3
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.3
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	99.3
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.29
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.29
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.27
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.26
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.26
PRK14967	223	putative methyltransferase; Provisional	99.25
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.25
PRK14968	188	putative methyltransferase; Provisional	99.24
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.24
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.24
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	99.24
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.23
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.23
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.22
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.22
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.22
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.22
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.22
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.21
PLN02336	475	phosphoethanolamine N-methyltransferase	99.21
PRK08317	241	hypothetical protein; Provisional	99.19
PRK05785	226	hypothetical protein; Provisional	99.19
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.18
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.18
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.17
PRK06922	677	hypothetical protein; Provisional	99.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.17
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.16
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.16
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.16
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.14
PRK07402	196	precorrin-6B methylase; Provisional	99.13
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.13
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	99.13
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.12
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.12
PRK12335	287	tellurite resistance protein TehB; Provisional	99.11
PRK04457	262	spermidine synthase; Provisional	99.11
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.1
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.1
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.09
TIGR03438	301	probable methyltransferase. This model represents	99.09
KOG1270|consensus	282		99.06
PHA03411	279	putative methyltransferase; Provisional	99.06
COG2890	280	HemK Methylase of polypeptide chain release factor	99.05
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.04
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.04
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.04
PRK00811	283	spermidine synthase; Provisional	99.03
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.02
PLN02336	475	phosphoethanolamine N-methyltransferase	99.02
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.01
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.0
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.0
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.99
KOG4300|consensus	252		98.99
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.97
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.97
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.97
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.97
PLN03075	296	nicotianamine synthase; Provisional	98.96
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.96
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.95
PHA03412	241	putative methyltransferase; Provisional	98.94
PLN02672	1082	methionine S-methyltransferase	98.93
PRK06202	232	hypothetical protein; Provisional	98.91
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.9
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.89
KOG1122|consensus	460		98.88
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	98.88
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.88
KOG1271|consensus	227		98.87
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.86
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.85
COG2521	287	Predicted archaeal methyltransferase [General func	98.85
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.83
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.83
PLN02366	308	spermidine synthase	98.81
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.79
KOG1975|consensus	389		98.79
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.75
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.74
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.72
KOG2904|consensus	328		98.72
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.71
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.71
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.7
PRK03612	521	spermidine synthase; Provisional	98.69
PRK01581	374	speE spermidine synthase; Validated	98.66
KOG1541|consensus	270		98.66
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.66
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.65
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.64
PLN02476	278	O-methyltransferase	98.61
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.6
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.59
KOG1499|consensus	346		98.59
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.58
KOG3010|consensus	261		98.57
KOG2361|consensus	264		98.54
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.54
KOG3191|consensus	209		98.52
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.49
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.48
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.48
KOG2198|consensus	375		98.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.45
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.45
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.43
KOG1500|consensus	517		98.4
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.4
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.38
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.37
KOG3045|consensus	325		98.37
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.36
KOG1596|consensus	317		98.35
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.34
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.34
PLN02823	336	spermine synthase	98.33
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.33
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.32
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.32
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.32
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.31
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.28
COG4122	219	Predicted O-methyltransferase [General function pr	98.25
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.24
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.23
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.22
KOG2899|consensus	288		98.2
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.19
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.18
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.18
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.17
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.12
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.04
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.04
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.03
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.02
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.0
KOG2940|consensus	325		98.0
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.98
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.95
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.95
COG2520	341	Predicted methyltransferase [General function pred	97.94
PRK04148	134	hypothetical protein; Provisional	97.89
KOG1663|consensus	237		97.86
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.86
KOG1661|consensus	237		97.82
PRK00536	262	speE spermidine synthase; Provisional	97.81
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.8
KOG3420|consensus	185		97.8
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.8
KOG2915|consensus	314		97.8
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.77
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.77
KOG0820|consensus	315		97.76
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.76
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.75
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.74
COG4076	252	Predicted RNA methylase [General function predicti	97.73
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.72
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.71
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.7
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.62
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.55
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.53
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.53
KOG1331|consensus	293		97.52
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.34
COG2933	358	Predicted SAM-dependent methyltransferase [General	97.34
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.33
COG4798	238	Predicted methyltransferase [General function pred	97.3
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.22
KOG2187|consensus	534		97.13
PRK11524	284	putative methyltransferase; Provisional	97.13
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.12
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.11
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.11
KOG0024|consensus	354		97.1
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.1
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.03
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.01
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.0
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.95
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.94
KOG1269|consensus	364		96.92
PRK13699	227	putative methylase; Provisional	96.88
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.88
KOG2671|consensus	421		96.78
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.69
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.66
PRK10742	250	putative methyltransferase; Provisional	96.6
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.57
COG3897	218	Predicted methyltransferase [General function pred	96.56
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.52
PF13679	141	Methyltransf_32: Methyltransferase domain	96.45
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.41
KOG3115|consensus	249		96.35
KOG3987|consensus	288		96.33
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.8
KOG1709|consensus	271		95.79
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.72
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.68
KOG3178|consensus	342		95.64
KOG2730|consensus	263		95.62
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.4
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.29
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.29
COG0286	489	HsdM Type I restriction-modification system methyl	95.19
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.94
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.9
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.61
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	94.55
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.25
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.16
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.13
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.04
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.93
PLN02740	381	Alcohol dehydrogenase-like	93.88
PRK08177	225	short chain dehydrogenase; Provisional	93.64
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.63
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	93.62
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.56
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.46
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.43
PLN02827	378	Alcohol dehydrogenase-like	93.41
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.4
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	93.39
PRK06398	258	aldose dehydrogenase; Validated	93.28
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.21
KOG1209|consensus	289		93.12
KOG2360|consensus	413		92.98
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	92.94
KOG4022|consensus	236		92.93
KOG2651|consensus	476		92.88
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	92.8
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.73
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.63
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.62
KOG2352|consensus	482		92.57
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.43
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.41
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	92.34
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	92.22
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	92.2
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	92.18
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.15
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	92.14
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.13
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.03
PRK06179	270	short chain dehydrogenase; Provisional	92.0
PF03269	177	DUF268: Caenorhabditis protein of unknown function	92.0
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	91.96
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.78
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.77
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.61
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	91.59
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	91.54
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.42
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.99
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.96
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	90.8
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	90.75
PLN02494	477	adenosylhomocysteinase	90.69
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	90.67
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.5
KOG3201|consensus	201		90.48
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	90.33
KOG0022|consensus	375		90.29
PRK07806	248	short chain dehydrogenase; Provisional	90.24
KOG0023|consensus	360		90.18
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	90.15
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	90.11
PHA01634	156	hypothetical protein	90.1
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.07
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	89.97
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	89.85
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	89.83
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	89.64
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.52
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	89.21
PRK06196	315	oxidoreductase; Provisional	89.18
KOG1562|consensus	337		89.13
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	89.12
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	89.04
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	88.92
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	88.63
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	88.23
PRK07578	199	short chain dehydrogenase; Provisional	88.11
PRK05993	277	short chain dehydrogenase; Provisional	88.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	87.9
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	87.76
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.71
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	87.6
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	87.46
PLN02178	375	cinnamyl-alcohol dehydrogenase	87.45
KOG2920|consensus	282		87.28
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	87.21
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	87.12
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.73
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	86.66
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	86.59
PRK07326	237	short chain dehydrogenase; Provisional	86.25
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	86.21
PRK06523	260	short chain dehydrogenase; Provisional	86.12
COG1255	129	Uncharacterized protein conserved in archaea [Func	85.87
PRK08265	261	short chain dehydrogenase; Provisional	85.66
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	85.05
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	85.05
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	84.94
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	84.87
COG2384	226	Predicted SAM-dependent methyltransferase [General	84.77
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	84.67
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	84.42
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	84.34
COG2910	211	Putative NADH-flavin reductase [General function p	84.34
PRK06182	273	short chain dehydrogenase; Validated	84.26
PRK07454	241	short chain dehydrogenase; Provisional	84.11
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	84.03
PLN02702	364	L-idonate 5-dehydrogenase	83.94
KOG2352|consensus	482		83.81
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	83.81
PLN02240	352	UDP-glucose 4-epimerase	83.72
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	83.72
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	83.7
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	83.64
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	83.34
KOG0822|consensus	649		83.26
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	83.26
PRK07576	264	short chain dehydrogenase; Provisional	83.21
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	83.19
PTZ00075	476	Adenosylhomocysteinase; Provisional	83.18
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	83.16
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	83.12
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	83.01
PRK05693	274	short chain dehydrogenase; Provisional	82.91
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	82.55
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	82.54
PRK06181	263	short chain dehydrogenase; Provisional	82.49
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	82.29
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	82.25
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	82.23
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	82.16
PRK08267	260	short chain dehydrogenase; Provisional	82.08
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	82.01
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	81.76
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	81.76
PRK08324	681	short chain dehydrogenase; Validated	81.72
PRK07985	294	oxidoreductase; Provisional	81.7
PRK07814	263	short chain dehydrogenase; Provisional	81.48
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	81.39
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	81.24
PRK08264	238	short chain dehydrogenase; Validated	81.21
PRK06128	300	oxidoreductase; Provisional	80.99
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	80.88
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	80.68
PLN02653	340	GDP-mannose 4,6-dehydratase	80.65
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	80.44
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	80.38
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	80.22

>KOG4589|consensus

Probab=100.00  E-value=2.8e-51  Score=316.76  Aligned_cols=206  Identities=49%  Similarity=0.803  Sum_probs=199.7

Q ss_pred             CCCCCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCC
Q psy1489          15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPK   94 (229)
Q Consensus        15 ~~~~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~   94 (229)
                      .++++.+.|+.|+..|+|.+.++.++||+|++|||+||+++|.+++|+++|||+||+||.|++.+.++.+        |+
T Consensus        23 ~rs~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~--------p~   94 (232)
T KOG4589|consen   23 YRSKSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN--------PN   94 (232)
T ss_pred             cccccHHHHHHHhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhC--------CC
Confidence            5778999999999999999999999999999999999999999999999999999999999999999987        89


Q ss_pred             cEEEEEeCCCCCCCCCCeEEecC-CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHc
Q psy1489          95 GLVLSVDKLPIYPIDGAVVLSKC-DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTY  173 (229)
Q Consensus        95 ~~v~gvD~~~~~~~~~~~~~~~~-D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~  173 (229)
                      |.|+|||+.++.+++++.++ ++ |++++.+..+|.+.++...+|+|+|||.|+++|++..||...+++|..++..+...
T Consensus        95 g~v~gVDllh~~p~~Ga~~i-~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~  173 (232)
T KOG4589|consen   95 GMVLGVDLLHIEPPEGATII-QGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTL  173 (232)
T ss_pred             ceEEEEeeeeccCCCCcccc-cccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999 65 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489         174 SKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       174 LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~  229 (229)
                      ++|+|.|++|+|.+.+...+...|...|..|+.+||.+||.+|+|.|+||++|||.
T Consensus       174 ~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~  229 (232)
T KOG4589|consen  174 LIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGN  229 (232)
T ss_pred             cCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCc
Confidence            99999999999999999999999999999999999999999999999999999973

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-49  Score=316.75  Aligned_cols=203  Identities=44%  Similarity=0.787  Sum_probs=196.5

Q ss_pred             CCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEE
Q psy1489          18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLV   97 (229)
Q Consensus        18 ~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v   97 (229)
                      .+++.|+.+++.|+|++.++.++|++|++|||+||++++.++++|+.|+||||.||+|+++++++++        +.+.|
T Consensus         2 ~~s~~wl~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~--------~~~~i   73 (205)
T COG0293           2 GSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG--------AGGKI   73 (205)
T ss_pred             cchHHHHHHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC--------CCCcE
Confidence            5678999999999999999999999999999999999999999999999999999999999999987        56679


Q ss_pred             EEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC
Q psy1489          98 LSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG  177 (229)
Q Consensus        98 ~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg  177 (229)
                      +|+|+.||.+++++.++ ++|+++.++...|.+.+....+|+|+|||+|+.+|.+..||...+.++..++..+..+|+||
T Consensus        74 vavDi~p~~~~~~V~~i-q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~  152 (205)
T COG0293          74 VAVDILPMKPIPGVIFL-QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG  152 (205)
T ss_pred             EEEECcccccCCCceEE-eeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC
Confidence            99999999999999999 99999999999999999888899999999999999999999999999999999999999999


Q ss_pred             CEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489         178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       178 G~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~  229 (229)
                      |.|++++|++.+.++++..++++|..|+++||.+||++|.|+|+||++|+++
T Consensus       153 G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~  204 (205)
T COG0293         153 GSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK  204 (205)
T ss_pred             CeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence            9999999999999999999999999999999999999999999999999974

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=100.00  E-value=4.5e-44  Score=291.39  Aligned_cols=203  Identities=37%  Similarity=0.607  Sum_probs=187.4

Q ss_pred             CCCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE
Q psy1489          17 DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL   96 (229)
Q Consensus        17 ~~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~   96 (229)
                      +.++.+|+.++..|+|+..++..+|++|++||+.+++.++.+++++.+|||||||||.|++.++++.+        +.++
T Consensus         7 ~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~--------~~~~   78 (209)
T PRK11188          7 SASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG--------DKGR   78 (209)
T ss_pred             ccchHHHHHHhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC--------CCce
Confidence            66889999999999999999999999999999999999999889999999999999999999999875        5679


Q ss_pred             EEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC
Q psy1489          97 VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP  176 (229)
Q Consensus        97 v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp  176 (229)
                      |+|||+++|.+.+++.++ ++|+++..+.+.+...+.++.||+|+||++|...+.+..|......+...++.++.++|+|
T Consensus        79 V~aVDi~~~~~~~~v~~i-~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp  157 (209)
T PRK11188         79 VIACDILPMDPIVGVDFL-QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP  157 (209)
T ss_pred             EEEEecccccCCCCcEEE-ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999998888899999 9999998877777777778899999999998888877666666666678899999999999


Q ss_pred             CCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489         177 GADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG  228 (229)
Q Consensus       177 gG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~  228 (229)
                      ||.|++++|.+....++++.++.+|..+++.||.+||..|.|+|+||+||+|
T Consensus       158 GG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~  209 (209)
T PRK11188        158 GGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL  209 (209)
T ss_pred             CCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence            9999999999999999999999999999999999999999999999999986

>KOG1099|consensus

Probab=100.00  E-value=3.9e-43  Score=279.31  Aligned_cols=200  Identities=34%  Similarity=0.559  Sum_probs=184.7

Q ss_pred             hccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC
Q psy1489          26 RQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI  105 (229)
Q Consensus        26 ~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~  105 (229)
                      ++.+|-|++.+++++||+|++|||+++++.|++++.-.+|+|||++||.|+++|++++........+...++++||+++|
T Consensus         6 kDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M   85 (294)
T KOG1099|consen    6 KDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM   85 (294)
T ss_pred             chhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC
Confidence            45689999999999999999999999999999998889999999999999999999885311001111225999999999


Q ss_pred             CCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         106 YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       106 ~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .+++++..+ ++||+.+.+.+.|.+++.+++.|+|+||++|+++|+|++|.+...+++.++|..+..+|+|||.||-|+|
T Consensus        86 aPI~GV~ql-q~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif  164 (294)
T KOG1099|consen   86 APIEGVIQL-QGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF  164 (294)
T ss_pred             CccCceEEe-ecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       186 ~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      .+.+...+...|+.+|.+|.+.||.+||++|.|.|+||.+|
T Consensus       165 Rg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~  205 (294)
T KOG1099|consen  165 RGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGY  205 (294)
T ss_pred             ccCchHHHHHHHHHHhhceeeecCCccccccceeeeeeccc
Confidence            99999999999999999999999999999999999999998

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=100.00  E-value=2.8e-38  Score=252.02  Aligned_cols=177  Identities=43%  Similarity=0.731  Sum_probs=152.6

Q ss_pred             ccchhhhhhHhhhhhcCccCCC--CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCC
Q psy1489          41 YRCRSAFKLLEIDSKIKFLRPG--LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD  118 (229)
Q Consensus        41 ~~~r~~~kl~~i~~~~~~~~~g--~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D  118 (229)
                      |++|+++||.|++++|.++.++  .+||||||+||+|+++++++.+        +.++|+|+|+.++.+.+++..+ ++|
T Consensus         1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~--------~~~~v~avDl~~~~~~~~~~~i-~~d   71 (181)
T PF01728_consen    1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG--------PAGRVVAVDLGPMDPLQNVSFI-QGD   71 (181)
T ss_dssp             SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT--------TEEEEEEEESSSTGS-TTEEBT-TGG
T ss_pred             CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc--------ccceEEEEeccccccccceeee-ecc
Confidence            7899999999999999977764  9999999999999999998863        4679999999998888899999 999


Q ss_pred             CCChhHHHHHHHHhCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         119 FTQPDIQDRLVTILKD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                      +++......+...+.+  +.+|+|+||++++++|.+..|+...++++..++..+..+|+|||+||+++|......++++.
T Consensus        72 ~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~  151 (181)
T PF01728_consen   72 ITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYL  151 (181)
T ss_dssp             GEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHH
T ss_pred             cchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHH
Confidence            9988777777776654  78999999999999999999999999999999999999999999999999998777799999


Q ss_pred             HHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         197 ITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       197 l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      ++.+|+.|.++||.+||++|+|+|+||+||
T Consensus       152 l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f  181 (181)
T PF01728_consen  152 LKRCFSKVKIVKPPSSRSESSEEYLVCRGF  181 (181)
T ss_dssp             HHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred             HHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence            999999999999999999999999999997

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1098|consensus

Probab=100.00  E-value=3.7e-35  Score=260.60  Aligned_cols=194  Identities=36%  Similarity=0.505  Sum_probs=183.5

Q ss_pred             ccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC
Q psy1489          27 QFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY  106 (229)
Q Consensus        27 ~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~  106 (229)
                      .+.|.||+.|++.||++|++|||++|+.+|.++.++..||||||+||+|.+++++.++        ..+.|+|||+-|+.
T Consensus        10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p--------v~slivGvDl~pik   81 (780)
T KOG1098|consen   10 GRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP--------VGSLIVGVDLVPIK   81 (780)
T ss_pred             ccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC--------CCceEEEeeeeecc
Confidence            4689999999999999999999999999999999999999999999999999999986        56789999999999


Q ss_pred             CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         107 PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       107 ~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      +++++..+ +.||+...+...+...+.--+.|+|++|++|++.+.|..|.+....+...+++.|...|+.||+|+.++|.
T Consensus        82 p~~~c~t~-v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr  160 (780)
T KOG1098|consen   82 PIPNCDTL-VEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR  160 (780)
T ss_pred             cCCccchh-hhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence            99999888 99999888777777777777789999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489         187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       187 ~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~  229 (229)
                      ..+...++..+.+.|..|...||++||+.|.|+|+||.||++|
T Consensus       161 s~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P  203 (780)
T KOG1098|consen  161 SEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAP  203 (780)
T ss_pred             CCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCc
Confidence            9999999999999999999999999999999999999999975

>TIGR00438 rrmJ cell division protein FtsJ

Probab=100.00  E-value=1.4e-31  Score=214.75  Aligned_cols=188  Identities=40%  Similarity=0.701  Sum_probs=165.8

Q ss_pred             cHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC
Q psy1489          30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID  109 (229)
Q Consensus        30 d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~  109 (229)
                      |.|++.++++++++|.+|++.++++++..+++|.+|||+|||||+++..++++..        +.++|+|+|++++...+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~--------~~~~v~~vDis~~~~~~   72 (188)
T TIGR00438         1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG--------GKGRVIAVDLQPMKPIE   72 (188)
T ss_pred             CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC--------CCceEEEEeccccccCC
Confidence            4678888999999999999999999999999999999999999999999998764        45789999999955556


Q ss_pred             CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      ++.++ ++|+.+......+.+.++++.||+|++|+++...|.+..++....+....++..+.++|+|||++++.++....
T Consensus        73 ~i~~~-~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~  151 (188)
T TIGR00438        73 NVDFI-RGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE  151 (188)
T ss_pred             CceEE-EeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc
Confidence            78888 89998866555555556777899999998877777787888777777788999999999999999998888888


Q ss_pred             hHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       190 ~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      ..+++..++..|..+++.+|..||..|+|.|+||++|
T Consensus       152 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T TIGR00438       152 IDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF  188 (188)
T ss_pred             HHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence            8999999988999999999999999999999999987

>KOG3673|consensus

Probab=99.72  E-value=2.4e-17  Score=145.57  Aligned_cols=192  Identities=20%  Similarity=0.287  Sum_probs=146.3

Q ss_pred             hhccCcHHHHHHHhcCccchhhhhhHhhhhhcCcc-C-C----C-----------CeeEeecCCCCchHHHHHHHHhccC
Q psy1489          25 KRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFL-R-P----G-----------LKVLDCGAAPGSWSQVAVKLVNSHG   87 (229)
Q Consensus        25 ~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~-~-~----g-----------~~VLDlGcGpG~~s~~la~~~~~~~   87 (229)
                      .|.++.+|- ..+..-+..|++.|+..++..++.+ . |    |           ....|+|+|||+|+.|++.+-.+  
T Consensus       215 ARtRaNPyE-tIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w--  291 (845)
T KOG3673|consen  215 ARTRANPYE-TIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFW--  291 (845)
T ss_pred             HhhcCChHH-HHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhh--
Confidence            356788884 4456668899999999887776531 1 0    1           24568999999999999876532  


Q ss_pred             CCCCCCCcEEEEEeCCC----------------CCCCCCCeEEecCCCCChhHHHHHHHHhC----CCCccEEEeCCCCC
Q psy1489          88 YDSKQPKGLVLSVDKLP----------------IYPIDGAVVLSKCDFTQPDIQDRLVTILK----DDKLDVVLSDMAPN  147 (229)
Q Consensus        88 ~~~~~~~~~v~gvD~~~----------------~~~~~~~~~~~~~D~~~~~~~~~i~~~~~----~~~~D~V~sd~~~~  147 (229)
                            .++-.|.-+.-                .....++.  ..||++++..++.+.+++.    +..+++.++|+.+.
T Consensus       292 ------~AKGFGfTL~G~nDFKLekF~aaS~e~FetfYG~k--~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFS  363 (845)
T KOG3673|consen  292 ------NAKGFGFTLAGKNDFKLEKFTAASQEFFETFYGTK--DDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFS  363 (845)
T ss_pred             ------ccccceeEeccCCccchhhhhhcCHHhhhcccccc--CCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCcc
Confidence                  22334443321                01122332  2689999887776666543    35689999999999


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         148 ATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       148 ~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                      +.|..+.+.+.+-++.+..+-.+...+++||.|++++|.-  +...-++++|+-||..|.++||.+||+.+||.|+||+|
T Consensus       364 VEGQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKg  443 (845)
T KOG3673|consen  364 VEGQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKG  443 (845)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecc
Confidence            9998888888888888888888999999999999999873  55688999999999999999999999999999999999


Q ss_pred             CC
Q psy1489         226 FK  227 (229)
Q Consensus       226 ~~  227 (229)
                      .+
T Consensus       444 lr  445 (845)
T KOG3673|consen  444 LR  445 (845)
T ss_pred             hh
Confidence            87

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=5.7e-16  Score=127.45  Aligned_cols=110  Identities=22%  Similarity=0.333  Sum_probs=86.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------CCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+|.+|||+|||||-++..+++..         +.++|+|+|+|+ |..          ..+++++ .+|+.+.+     
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~---------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv-~~dAe~LP-----  114 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSV---------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFV-VGDAENLP-----  114 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhc---------CCceEEEEECCHHHHHHHHHHhhccCccceEEE-EechhhCC-----
Confidence            379999999999999999999987         468999999997 421          2237888 99988742     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                         +++++||+|.+..     |+++..      ....+|+++.|+|||||++++-.+..+....+...+.
T Consensus       115 ---f~D~sFD~vt~~f-----glrnv~------d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~  170 (238)
T COG2226         115 ---FPDNSFDAVTISF-----GLRNVT------DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI  170 (238)
T ss_pred             ---CCCCccCEEEeee-----hhhcCC------CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH
Confidence               8899999999965     334433      3568999999999999999988787765544444443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.64  E-value=1.5e-16  Score=131.42  Aligned_cols=116  Identities=24%  Similarity=0.399  Sum_probs=74.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||||.++..++++.+        +.++|+|+|+|+ |.          ...+++++ ++|..+.+    
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v-~~da~~lp----  111 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFV-QGDAEDLP----  111 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT--SEEEE-E-BTTB------
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE-EcCHHHhc----
Confidence            46789999999999999999998876        678999999997 42          23478899 99998843    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS  202 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~  202 (229)
                          +++++||+|++..     |+++..      ....+++++.|+|||||++++-.|..+....+...+..+|.
T Consensus       112 ----~~d~sfD~v~~~f-----glrn~~------d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~  171 (233)
T PF01209_consen  112 ----FPDNSFDAVTCSF-----GLRNFP------DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK  171 (233)
T ss_dssp             ----S-TT-EEEEEEES------GGG-S------SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred             ----CCCCceeEEEHHh-----hHHhhC------CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence                6789999999955     344332      24578999999999999999877877764444444444443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PTZ00146 fibrillarin; Provisional

Probab=99.57  E-value=2.1e-13  Score=115.14  Aligned_cols=138  Identities=23%  Similarity=0.247  Sum_probs=93.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----C----CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----Y----PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~----~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++++++|||||||||.|+.++++.++        +.++|+|||+++ |    .    ..+++.++ .+|++.+..   +.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG--------~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I-~~Da~~p~~---y~  197 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVG--------PEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI-IEDARYPQK---YR  197 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhC--------CCCEEEEEECcHHHHHHHHHHhhhcCCCEEE-ECCccChhh---hh
Confidence            57899999999999999999999987        678999999996 1    1    23578888 899876431   11


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec-----CCCChHHH----HHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW-----DGRNRPQL----EESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~-----~~~~~~~~----~~~l~~~  200 (229)
                        .....||+|++|++.       .|+      ...++.++.++|||||.|++++-     .++..+++    ++.|+..
T Consensus       198 --~~~~~vDvV~~Dva~-------pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~  262 (293)
T PTZ00146        198 --MLVPMVDVIFADVAQ-------PDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKE  262 (293)
T ss_pred             --cccCCCCEEEEeCCC-------cch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHc
Confidence              123479999999852       222      23445568999999999998542     22333343    3556665


Q ss_pred             -CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         201 -YSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       201 -F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                       |..++.+..  ..-+.....+|++.
T Consensus       263 GF~~~e~v~L--~Py~~~h~~v~~~~  286 (293)
T PTZ00146        263 GLKPKEQLTL--EPFERDHAVVIGVY  286 (293)
T ss_pred             CCceEEEEec--CCccCCcEEEEEEE
Confidence             887777653  22244445555543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=4.2e-14  Score=116.63  Aligned_cols=155  Identities=17%  Similarity=0.191  Sum_probs=107.7

Q ss_pred             hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCCh
Q psy1489          55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQP  122 (229)
Q Consensus        55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~  122 (229)
                      .|.......+|||||||.|..+..++++.         +..+|+|||+++ +.          +. ++++++ ++|+.+ 
T Consensus        38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~---------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~-~~Di~~-  106 (248)
T COG4123          38 AFAPVPKKGRILDLGAGNGALGLLLAQRT---------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI-EADIKE-  106 (248)
T ss_pred             hhcccccCCeEEEecCCcCHHHHHHhccC---------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe-hhhHHH-
Confidence            44444557899999999999999999986         448999999997 21          11 357788 888776 


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCC-cccHHHH------HHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMR-EMDHDLI------TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE  195 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~-~~d~~~~------~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~  195 (229)
                           +.......+||+|+||++....+.. ..+....      .-..++.++.+.+.|||||.+.+ +.......++++
T Consensus       107 -----~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~  180 (248)
T COG4123         107 -----FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIE  180 (248)
T ss_pred             -----hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHH
Confidence                 2233444579999999986554443 2222111      11345788999999999999998 566677889999


Q ss_pred             HHHhh-CCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         196 SITRF-YSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       196 ~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      .++++ |. .+..++..+|.+..-..++-.+.|
T Consensus       181 ~l~~~~~~-~k~i~~V~p~~~k~A~~vLv~~~k  212 (248)
T COG4123         181 LLKSYNLE-PKRIQFVYPKIGKAANRVLVEAIK  212 (248)
T ss_pred             HHHhcCCC-ceEEEEecCCCCCcceEEEEEEec
Confidence            99885 43 344446666766555555555444

>KOG3674|consensus

Probab=99.54  E-value=2.2e-14  Score=125.60  Aligned_cols=188  Identities=16%  Similarity=0.163  Sum_probs=128.9

Q ss_pred             ccchhhhhhHhhhhhcCccC-CCC--eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------
Q psy1489          41 YRCRSAFKLLEIDSKIKFLR-PGL--KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------  106 (229)
Q Consensus        41 ~~~r~~~kl~~i~~~~~~~~-~g~--~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------  106 (229)
                      ....++.|+-|+...|.+.. ++.  .-+.||-|||+|...+-..+.+.. .+...-.+=.+.-++|- +          
T Consensus       109 ~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r-~k~~~~W~W~anTLNPY~E~n~~~~mi~D  187 (696)
T KOG3674|consen  109 NVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSR-GKNMSYWKWGANTLNPYFENNSCFDMIID  187 (696)
T ss_pred             HHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhcc-CCccceeeeccCccCcccccchHHHHhcc
Confidence            35577889999998987643 443  568999999999877666553211 11111112233444431 0          


Q ss_pred             -----CCCCCeEEe---cCCCCChhHHHHHHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC
Q psy1489         107 -----PIDGAVVLS---KCDFTQPDIQDRLVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG  177 (229)
Q Consensus       107 -----~~~~~~~~~---~~D~~~~~~~~~i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg  177 (229)
                           +.-.-++.+   .||+.+......+.+.+ -.+.+|+|.+|++.++.|.+.-.......+...-...|.+.|+.|
T Consensus       188 Dr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~g  267 (696)
T KOG3674|consen  188 DRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRG  267 (696)
T ss_pred             chhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence                 000122331   34554432222232211 146899999999999999887766555556666777899999999


Q ss_pred             CEEEEeecCCC--ChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489         178 ADCLIKIWDGR--NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       178 G~~v~~~~~~~--~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~  229 (229)
                      |+|++|+|...  -...+++.|.-.|+.|+++||.+||++++|.|+||.+|||+
T Consensus       268 G~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~  321 (696)
T KOG3674|consen  268 GRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDH  321 (696)
T ss_pred             CeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCC
Confidence            99999998743  35778888988999999999999999999999999999986

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.52  E-value=5.4e-14  Score=110.96  Aligned_cols=120  Identities=28%  Similarity=0.368  Sum_probs=84.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..++++.         +..+|+++|+++.           ..++++.++ ..|+.+.       
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~---------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~-~~d~~~~-------   93 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRG---------PDAKVTAVDINPDALELAKRNAERNGLENVEVV-QSDLFEA-------   93 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTS---------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEE-ESSTTTT-------
T ss_pred             cCCeEEEecCChHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccc-ccccccc-------
Confidence            57899999999999999999875         5668999999972           123447788 8887762       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEc
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILK  208 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~k  208 (229)
                        +++.+||+|++|++....+      .........++..+.++|+|||.+++..-.......+   +++.|..+++.+
T Consensus        94 --~~~~~fD~Iv~NPP~~~~~------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~~  161 (170)
T PF05175_consen   94 --LPDGKFDLIVSNPPFHAGG------DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVVA  161 (170)
T ss_dssp             --CCTTCEEEEEE---SBTTS------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEEE
T ss_pred             --ccccceeEEEEccchhccc------ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEEE
Confidence              4468999999997642111      1123455688999999999999998755444444444   777788888764

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.52  E-value=2.8e-14  Score=120.05  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------------CCCCeEEecCCCCChhH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------------~~~~~~~~~~D~~~~~~  124 (229)
                      ++++.+|||+|||+|.++..++++.+        +.++|+|+|+++ |..             .+++.++ .+|+.+.+ 
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~-~~d~~~lp-  140 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI-EGDATDLP-  140 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEE-EcccccCC-
Confidence            46789999999999999999988765        567999999997 311             2357788 88877632 


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                             +++++||+|++....     +..+      ....++.++.++|||||.+++..+..+.
T Consensus       141 -------~~~~sfD~V~~~~~l-----~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~~  187 (261)
T PLN02233        141 -------FDDCYFDAITMGYGL-----RNVV------DRLKAMQEMYRVLKPGSRVSILDFNKST  187 (261)
T ss_pred             -------CCCCCEeEEEEeccc-----ccCC------CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence                   567889999996643     2221      2357899999999999999988777554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.51  E-value=1.9e-13  Score=123.27  Aligned_cols=132  Identities=20%  Similarity=0.278  Sum_probs=89.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||||+++..+++..+        +.++|+|+|+++.           ..+.++.++ .+|+.+..    
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~--------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~-~~D~~~~~----  314 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLK--------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETK-ALDARKVH----  314 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-eCCccccc----
Confidence            35788999999999999999999875        5689999999961           123457788 88877621    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCc-----------ccHHHHHHHHHHHHHHHHHcccCCCEEEEe---ecCCCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMRE-----------MDHDLITQLAIAVIRFAVTYSKPGADCLIK---IWDGRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~-----------~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~---~~~~~~~~~~  193 (229)
                        ..++ +.||+|++|++....|...           .+......++..++..+.++|||||.++..   ++...+...+
T Consensus       315 --~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv  391 (444)
T PRK14902        315 --EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVI  391 (444)
T ss_pred             --chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHH
Confidence              1122 6799999998754444311           111223345668899999999999999853   3333444445


Q ss_pred             HHHHHhh--CCeeEE
Q psy1489         194 EESITRF--YSQVKI  206 (229)
Q Consensus       194 ~~~l~~~--F~~v~~  206 (229)
                      .+.++.+  |+.+.+
T Consensus       392 ~~~l~~~~~~~~~~~  406 (444)
T PRK14902        392 EAFLEEHPEFELVPL  406 (444)
T ss_pred             HHHHHhCCCcEEecc
Confidence            5566652  544443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=3.6e-13  Score=121.06  Aligned_cols=154  Identities=19%  Similarity=0.236  Sum_probs=101.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|++|||+|||||+.+.++++.++        +.++|+|+|+++ +          ..+.++.++ .+|..+....  
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~--------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~-~~D~~~~~~~--  318 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMG--------DQGEIWAVDRSASRLKKLQENAQRLGLKSIKIL-AADSRNLLEL--  318 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhC--------CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEE-eCChhhcccc--
Confidence            35789999999999999999999875        567999999996 2          123457777 8887652100  


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcc--c---------HHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREM--D---------HDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~--d---------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~~~~  193 (229)
                       . ....+.||.|++|+++...|....  +         ......++..+|..+.++|||||+++..+..   ..+...+
T Consensus       319 -~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v  396 (434)
T PRK14901        319 -K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQI  396 (434)
T ss_pred             -c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH
Confidence             0 012467999999998654444211  1         1122334678999999999999999865432   3444555


Q ss_pred             HHHHHhhCCeeEEEcCC---CCCCCCceEEEEeccC
Q psy1489         194 EESITRFYSQVKILKPP---SSRSHSAELFLLGRGF  226 (229)
Q Consensus       194 ~~~l~~~F~~v~~~kp~---~sr~~s~E~Y~v~~~~  226 (229)
                      .+.++.+ ..+++..+.   ..+.+..+.+|+|+=.
T Consensus       397 ~~~l~~~-~~~~~~~~~~~~~P~~~~~dGfF~a~l~  431 (434)
T PRK14901        397 EQFLARH-PDWKLEPPKQKIWPHRQDGDGFFMAVLR  431 (434)
T ss_pred             HHHHHhC-CCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence            5666653 333333222   2234567899998643

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.50  E-value=2.8e-13  Score=111.70  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=76.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +.          ..++++++ .+|+.+..    
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~----  109 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVG--------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV-HGNAMELP----  109 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEE-EechhcCC----
Confidence            46789999999999999999998875        567999999996 21          23467777 88876521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCCh
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR  190 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~  190 (229)
                          +++++||+|+++....     ..+      ....++.++.++|+|||.+++.....+..
T Consensus       110 ----~~~~~fD~V~~~~~l~-----~~~------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~  157 (231)
T TIGR02752       110 ----FDDNSFDYVTIGFGLR-----NVP------DYMQVLREMYRVVKPGGKVVCLETSQPTI  157 (231)
T ss_pred             ----CCCCCccEEEEecccc-----cCC------CHHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence                4567899999965431     111      12367888999999999998765544443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.48  E-value=9.9e-14  Score=116.26  Aligned_cols=120  Identities=21%  Similarity=0.271  Sum_probs=83.0

Q ss_pred             CcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-
Q psy1489          29 ADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-  106 (229)
Q Consensus        29 ~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-  106 (229)
                      .+.|.+.+..   +.+....+++   .+. ..++.+|||+|||+|.++..++++.         |.++|+|+|+++ |. 
T Consensus         4 ~~~y~~~~~~---~~~~~~~ll~---~l~-~~~~~~vLDlGcG~G~~~~~l~~~~---------p~~~v~gvD~s~~~~~   67 (255)
T PRK14103          4 PDVYLAFADH---RGRPFYDLLA---RVG-AERARRVVDLGCGPGNLTRYLARRW---------PGAVIEALDSSPEMVA   67 (255)
T ss_pred             HHHHHHHHhH---hhCHHHHHHH---hCC-CCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHH
Confidence            4556544322   3344444444   333 3567899999999999999999875         567999999997 32 


Q ss_pred             --CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         107 --PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       107 --~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        ...++.++ .+|+.+.         .++++||+|+++....           .+.....++..+.++|||||.+++.+
T Consensus        68 ~a~~~~~~~~-~~d~~~~---------~~~~~fD~v~~~~~l~-----------~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         68 AARERGVDAR-TGDVRDW---------KPKPDTDVVVSNAALQ-----------WVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             HHHhcCCcEE-EcChhhC---------CCCCCceEEEEehhhh-----------hCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence              22467788 8876541         2356899999977531           11123567888999999999999865


Q ss_pred             c
Q psy1489         185 W  185 (229)
Q Consensus       185 ~  185 (229)
                      +
T Consensus       127 ~  127 (255)
T PRK14103        127 P  127 (255)
T ss_pred             C
Confidence            4

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.48  E-value=2.7e-13  Score=98.97  Aligned_cols=96  Identities=25%  Similarity=0.289  Sum_probs=71.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCC-CChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDF-TQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~-~~~~~~~~  127 (229)
                      |+.+|||||||+|.++..++++.         +..+|+|+|+++ |.           ..+++.++ ++|+ ...     
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~-----   65 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLSDRITFV-QGDAEFDP-----   65 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEE-ESCCHGGT-----
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE-ECccccCc-----
Confidence            57899999999999999999954         568999999997 21           23578899 9998 221     


Q ss_pred             HHHHhCCCCccEEEeCC-CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDM-APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                          -....||+|+++. ..     +..-+.   +....+++.+.+.|+|||++++.
T Consensus        66 ----~~~~~~D~v~~~~~~~-----~~~~~~---~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   66 ----DFLEPFDLVICSGFTL-----HFLLPL---DERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             ----TTSSCEEEEEECSGSG-----GGCCHH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----ccCCCCCEEEECCCcc-----ccccch---hHHHHHHHHHHHhcCCCcEEEEE
Confidence                1245699999976 21     101111   44567889999999999999985

...

>PRK04266 fibrillarin; Provisional

Probab=99.48  E-value=2.1e-12  Score=106.35  Aligned_cols=137  Identities=21%  Similarity=0.261  Sum_probs=92.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|.+|||+|||||.++.++++.+         +.++|+|+|+++ |        ....++.++ .+|+.++....   
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v---------~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i-~~D~~~~~~~~---  136 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIV---------EEGVVYAVEFAPRPMRELLEVAEERKNIIPI-LADARKPERYA---  136 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHhhhcCCcEEE-ECCCCCcchhh---
Confidence            5689999999999999999999886         347999999997 2        123578888 89987642111   


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee------cCCCC---hHHHHHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI------WDGRN---RPQLEESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~------~~~~~---~~~~~~~l~~~  200 (229)
                       .+. +.||+|+++++.         ..    ....++.++.++|||||.+++.+      +....   ..+.++.++..
T Consensus       137 -~l~-~~~D~i~~d~~~---------p~----~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~a  201 (226)
T PRK04266        137 -HVV-EKVDVIYQDVAQ---------PN----QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEG  201 (226)
T ss_pred             -hcc-ccCCEEEECCCC---------hh----HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHc
Confidence             122 459999998642         11    12346788999999999999842      22221   12344566554


Q ss_pred             -CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         201 -YSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       201 -F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                       |..+.....  +.-..-++++|++.
T Consensus       202 GF~~i~~~~l--~p~~~~h~~~v~~~  225 (226)
T PRK04266        202 GFEILEVVDL--EPYHKDHAAVVARK  225 (226)
T ss_pred             CCeEEEEEcC--CCCcCCeEEEEEEc
Confidence             776666643  22334577777764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=1.3e-12  Score=117.30  Aligned_cols=149  Identities=22%  Similarity=0.294  Sum_probs=97.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC----CCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI----DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~----~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..+|++|||+|||||+++..++++.         +.++|+|+|+++ +.     ..    ..+.++ .+|..+..     
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~---------~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~-~~D~~~~~-----  306 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELA---------PQAQVVALDIDAQRLERVRENLQRLGLKATVI-VGDARDPA-----  306 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-EcCcccch-----
Confidence            3578999999999999999999876         347999999997 21     01    125677 88887631     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCCChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGRNRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~~~~~~~  194 (229)
                       ..+.+++||.|++|+++...|....           +......++..++..+.++|||||.++..+   +...+...+.
T Consensus       307 -~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~  385 (427)
T PRK10901        307 -QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIK  385 (427)
T ss_pred             -hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHH
Confidence             1234568999999998755543211           111223456689999999999999999654   3345555555


Q ss_pred             HHHHhhCCeeEEEcCC---------CCCCCCceEEEEec
Q psy1489         195 ESITRFYSQVKILKPP---------SSRSHSAELFLLGR  224 (229)
Q Consensus       195 ~~l~~~F~~v~~~kp~---------~sr~~s~E~Y~v~~  224 (229)
                      ..++++ ..+++..+.         .......+.+++|+
T Consensus       386 ~~l~~~-~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~  423 (427)
T PRK10901        386 AFLARH-PDAELLDTGTPQQPGRQLLPGEEDGDGFFYAL  423 (427)
T ss_pred             HHHHhC-CCCEEecCCCCCCCceEECCCCCCCCCeEEEE
Confidence            666553 222333221         11233567788875

>KOG1540|consensus

Probab=99.45  E-value=6.2e-13  Score=108.68  Aligned_cols=122  Identities=21%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC---CCCeEEecCCCCChhHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI---DGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~---~~~~~~~~~D~~~~~~~  125 (229)
                      .++++|||+|||||-++..+.+.+.++   ......+|+.+|++| |.          ++   ..+.|+ .+|..+.+  
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~---~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~-~~dAE~Lp--  172 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQ---FGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWV-EGDAEDLP--  172 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccc---cCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEE-eCCcccCC--
Confidence            467999999999999999999988521   111237999999998 41          11   237788 88888743  


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCee
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV  204 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v  204 (229)
                            +++..||..++..     |+++.-+      .++++++|+|+|||||+|.+-.|+..+...+....++++.+|
T Consensus       173 ------Fdd~s~D~yTiaf-----GIRN~th------~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V  234 (296)
T KOG1540|consen  173 ------FDDDSFDAYTIAF-----GIRNVTH------IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV  234 (296)
T ss_pred             ------CCCCcceeEEEec-----ceecCCC------HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence                  7889999999854     5666554      468999999999999999988888877566667777776666

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.43  E-value=9.9e-13  Score=109.87  Aligned_cols=107  Identities=20%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ++.+|||+|||+|.++..+++.           ..+|+|+|+++ |.     ......++ .+|+.+..        +++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~l~~a~~~~~~~~~~-~~d~~~~~--------~~~  101 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER-----------GSQVTALDLSPPMLAQARQKDAADHYL-AGDIESLP--------LAT  101 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCCCCCEE-EcCcccCc--------CCC
Confidence            5679999999999999888754           26999999997 31     12234566 78876521        456


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                      ++||+|+++.+..           .......++.++.++|+|||.+++..+......++...+.
T Consensus       102 ~~fD~V~s~~~l~-----------~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~  154 (251)
T PRK10258        102 ATFDLAWSNLAVQ-----------WCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ  154 (251)
T ss_pred             CcEEEEEECchhh-----------hcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence            7899999976531           1122457889999999999999998777665555554443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.43  E-value=2e-12  Score=109.01  Aligned_cols=110  Identities=23%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|.+|||+|||||+++..+++.++        +.+.|+|+|+++ +          ..+.++.++ ..|..+.     
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~--------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~-~~D~~~~-----  134 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMK--------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVT-NFDGRVF-----  134 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcC--------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEe-cCCHHHh-----
Confidence            46889999999999999999999875        457999999996 1          123456677 7775431     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHH-----------HHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHD-----------LITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~-----------~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       ..  ....||.|++|+++...|....+..           ....++..+|..+.++|||||.++..+.
T Consensus       135 -~~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       135 -GA--AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             -hh--hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence             11  1346999999998765554332211           1223556799999999999999986653

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.43  E-value=3.3e-12  Score=114.64  Aligned_cols=125  Identities=20%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC--CC--CeE--EecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI--DG--AVV--LSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~--~~--~~~--~~~~D~~~~~~~~  126 (229)
                      +.+|.+|||+|||||+.+.++++.+         +.++|+|+|+++ +.     .+  .+  +.+  . .+|..+..   
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~---------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~-~~d~~~~~---  302 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELA---------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETK-DGDGRGPS---  302 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHc---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-cccccccc---
Confidence            4578999999999999999999876         457999999997 21     01  12  222  4 55544321   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHH
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQ  192 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~  192 (229)
                         ...+.+.||.|++|+++..+|....           +......++..+|..+.++|||||.++..+.+-   .+...
T Consensus       303 ---~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~  379 (426)
T TIGR00563       303 ---QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQ  379 (426)
T ss_pred             ---ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHH
Confidence               1123568999999998766664211           112334466789999999999999999766443   34444


Q ss_pred             HHHHHHh
Q psy1489         193 LEESITR  199 (229)
Q Consensus       193 ~~~~l~~  199 (229)
                      +...+++
T Consensus       380 v~~~l~~  386 (426)
T TIGR00563       380 IKAFLQE  386 (426)
T ss_pred             HHHHHHh
Confidence            4455554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.42  E-value=5.7e-13  Score=111.71  Aligned_cols=96  Identities=18%  Similarity=0.298  Sum_probs=73.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+|||+|||+|.++..+++..         +.++|+|+|+++ |     ...+++.++ .+|+.+.         .
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~d~~~~---------~   89 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERW---------PAARITGIDSSPAMLAEARSRLPDCQFV-EADIASW---------Q   89 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhCCCCeEE-ECchhcc---------C
Confidence            3568899999999999999999876         567999999997 2     134567788 8886541         2


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ++.+||+|+++.....    ..+       ...++..+.++|+|||.+++.+
T Consensus        90 ~~~~fD~v~~~~~l~~----~~d-------~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         90 PPQALDLIFANASLQW----LPD-------HLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             CCCCccEEEEccChhh----CCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence            3568999999875421    112       2467888999999999999865

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=3.5e-12  Score=114.45  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=82.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|.+|||+|||||+.+.++++.++        +.++|+|+|+++ +.          .+.+++++ .+|..+..    
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~--------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~-~~Da~~l~----  301 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMK--------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIK-IADAERLT----  301 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE-ECchhhhh----
Confidence            46789999999999999999999875        568999999997 11          23346677 78866521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccH-----------HHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDH-----------DLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----------~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                        . ..++.||.|++|+++...|....+.           .....++.++|..+.++|||||.++..+.+
T Consensus       302 --~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        302 --E-YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             --h-hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence              1 1245799999999876666532211           122345678899999999999999876644

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.41  E-value=1.1e-12  Score=110.16  Aligned_cols=108  Identities=22%  Similarity=0.263  Sum_probs=80.8

Q ss_pred             hhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEe
Q psy1489          48 KLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLS  115 (229)
Q Consensus        48 kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~  115 (229)
                      |+..+.+++. +++|++|||+|||.|+.+.++|++.+          .+|+|+++|+ +          ..++ ++++. 
T Consensus        60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~----------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~-  127 (283)
T COG2230          60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG----------VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR-  127 (283)
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC----------CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE-
Confidence            4445555666 68999999999999999999999875          7999999996 1          1233 57777 


Q ss_pred             cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ..|..+          + .+.||-|+|-.+....|...         ....+..+.++|+|||.+++.....
T Consensus       128 l~d~rd----------~-~e~fDrIvSvgmfEhvg~~~---------~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         128 LQDYRD----------F-EEPFDRIVSVGMFEHVGKEN---------YDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             eccccc----------c-ccccceeeehhhHHHhCccc---------HHHHHHHHHhhcCCCceEEEEEecC
Confidence            777776          2 24599999977654444322         3467888999999999999876544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.40  E-value=7e-13  Score=105.99  Aligned_cols=120  Identities=21%  Similarity=0.348  Sum_probs=90.8

Q ss_pred             CcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--
Q psy1489          29 ADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--  105 (229)
Q Consensus        29 ~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--  105 (229)
                      .+.|.+...   -|+|.+..|+.   +.. +.+-.+|.|||||||.-+..|+++.         |...|+|+|.|+ |  
T Consensus         5 p~~Yl~F~~---eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~Rw---------P~A~i~GiDsS~~Mla   68 (257)
T COG4106           5 PDQYLQFED---ERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRW---------PDAVITGIDSSPAMLA   68 (257)
T ss_pred             HHHHHHHHH---hccCcHHHHHh---hCC-ccccceeeecCCCCCHHHHHHHHhC---------CCCeEeeccCCHHHHH
Confidence            677765433   37888877765   433 3345799999999999999999998         789999999998 5  


Q ss_pred             ---CCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         106 ---YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       106 ---~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                         ..++++.|. .+|+.+         +-++..+|++++|+...    +-.||.       ..|......|.|||.+.+
T Consensus        69 ~Aa~rlp~~~f~-~aDl~~---------w~p~~~~dllfaNAvlq----WlpdH~-------~ll~rL~~~L~Pgg~LAV  127 (257)
T COG4106          69 KAAQRLPDATFE-EADLRT---------WKPEQPTDLLFANAVLQ----WLPDHP-------ELLPRLVSQLAPGGVLAV  127 (257)
T ss_pred             HHHHhCCCCcee-cccHhh---------cCCCCccchhhhhhhhh----hccccH-------HHHHHHHHhhCCCceEEE
Confidence               246888888 888654         45677899999998752    233442       455567778999999998


Q ss_pred             eec
Q psy1489         183 KIW  185 (229)
Q Consensus       183 ~~~  185 (229)
                      .+-
T Consensus       128 QmP  130 (257)
T COG4106         128 QMP  130 (257)
T ss_pred             ECC
Confidence            764

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.39  E-value=4.5e-12  Score=101.38  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..++++.         +.++|+++|+++ +.          .+.+++++ .+|...      
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~-~~d~~~------   92 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQF---------PSLQVTAIERNPDALRLIKENRQRFGCGNIDII-PGEAPI------   92 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEE-ecCchh------
Confidence            3578899999999999999998875         568999999997 21          12456777 676532      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI  206 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~  206 (229)
                         .+ .+.||+|+++...        ..      ....+..+.++|+|||.+++......+..++...+++. |..+.+
T Consensus        93 ---~~-~~~~D~v~~~~~~--------~~------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287         93 ---EL-PGKADAIFIGGSG--------GN------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC  154 (187)
T ss_pred             ---hc-CcCCCEEEECCCc--------cC------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence               12 3579999996532        01      23467789999999999988665556677777777664 554443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5.9e-12  Score=106.06  Aligned_cols=130  Identities=25%  Similarity=0.345  Sum_probs=92.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+|||||||.|.++..+++..         |..+++-+|++.+.           ..++..+. ..|+.+.        
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~---------p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~-~s~~~~~--------  220 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKS---------PQAKLTLVDVNARAVESARKNLAANGVENTEVW-ASNLYEP--------  220 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhC---------CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEE-Eeccccc--------
Confidence            4599999999999999999986         77899999999631           23443455 5665552        


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPP  210 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~  210 (229)
                       ..+ +||+|+||+++.. |     ......+..+.++.|.+.|++||.+.+.+-.   ...+...|.+.|.+|++..  
T Consensus       221 -v~~-kfd~IisNPPfh~-G-----~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y~~~L~~~Fg~v~~la--  287 (300)
T COG2813         221 -VEG-KFDLIISNPPFHA-G-----KAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPYEKKLKELFGNVEVLA--  287 (300)
T ss_pred             -ccc-cccEEEeCCCccC-C-----cchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCChHHHHHHhcCCEEEEE--
Confidence             333 8999999997642 2     1223345668899999999999999887763   3445567778899888774  


Q ss_pred             CCCCCCceEEEEeccCC
Q psy1489         211 SSRSHSAELFLLGRGFK  227 (229)
Q Consensus       211 ~sr~~s~E~Y~v~~~~~  227 (229)
                           ....|.|-+.+|
T Consensus       288 -----~~~gf~Vl~a~k  299 (300)
T COG2813         288 -----KNGGFKVLRAKK  299 (300)
T ss_pred             -----eCCCEEEEEEec
Confidence                 233455555544

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.38  E-value=1.3e-12  Score=105.81  Aligned_cols=122  Identities=13%  Similarity=0.085  Sum_probs=80.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.          ..+++.++ ++|+.+     .+.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~---------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~-~~d~~~-----~l~  104 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN---------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLL-CGDAVE-----VLL  104 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC---------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEE-ecCHHH-----HHH
Confidence            57899999999999999998875         567999999997 21          23567888 888621     133


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      ..++++.||+|+++.+.....  . .+.........+++.+.++|+|||.|++.........++++.++..
T Consensus       105 ~~~~~~~~D~V~~~~~~p~~~--~-~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  172 (202)
T PRK00121        105 DMFPDGSLDRIYLNFPDPWPK--K-RHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE  172 (202)
T ss_pred             HHcCccccceEEEECCCCCCC--c-cccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence            335577899999976421100  0 0000001234678899999999999998654333344555555543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.38  E-value=3.2e-12  Score=112.33  Aligned_cols=118  Identities=13%  Similarity=0.138  Sum_probs=83.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CC---CCCeEEecCCCCChhHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PI---DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~---~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.+|||||||+|.++..++++.         |..+|+++|++++.           ..   .+++++ ..|...      
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~---------P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~-~~D~l~------  292 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM-INNALS------  292 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE-Eccccc------
Confidence            4699999999999999999875         67899999999731           11   235666 666543      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~  207 (229)
                         .+++.+||+|+||++... +.. ..    .....+.+..+.++|+|||.|++.....   ..+...|++.|..+++.
T Consensus       293 ---~~~~~~fDlIlsNPPfh~-~~~-~~----~~ia~~l~~~a~~~LkpGG~L~iV~nr~---l~y~~~L~~~fg~~~~v  360 (378)
T PRK15001        293 ---GVEPFRFNAVLCNPPFHQ-QHA-LT----DNVAWEMFHHARRCLKINGELYIVANRH---LDYFHKLKKIFGNCTTI  360 (378)
T ss_pred             ---cCCCCCEEEEEECcCccc-Ccc-CC----HHHHHHHHHHHHHhcccCCEEEEEEecC---cCHHHHHHHHcCCceEE
Confidence               133568999999887532 111 11    1234577889999999999999865333   33556677788888765

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.38  E-value=4.2e-12  Score=106.96  Aligned_cols=105  Identities=22%  Similarity=0.175  Sum_probs=74.7

Q ss_pred             hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCCh
Q psy1489          52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQP  122 (229)
Q Consensus        52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~  122 (229)
                      +..... +.++.+|||+|||+|..+..+++..          .++|+|+|+++ |.        ...++.+. .+|+.+.
T Consensus        44 ~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~----------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~-~~D~~~~  111 (263)
T PTZ00098         44 ILSDIE-LNENSKVLDIGSGLGGGCKYINEKY----------GAHVHGVDICEKMVNIAKLRNSDKNKIEFE-ANDILKK  111 (263)
T ss_pred             HHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc----------CCEEEEEECCHHHHHHHHHHcCcCCceEEE-ECCcccC
Confidence            333443 4678999999999999999988754          36999999997 21        12357777 8887752


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                              .+++++||+|++.....        + ........+++.+.++|||||.|++..+
T Consensus       112 --------~~~~~~FD~V~s~~~l~--------h-~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        112 --------DFPENTFDMIYSRDAIL--------H-LSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             --------CCCCCCeEEEEEhhhHH--------h-CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                    25577899999943210        0 0012345789999999999999998654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.37  E-value=5.1e-12  Score=100.71  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=75.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..++...         +.++|+|+|+++ |.          .+++++++ ++|+.+.       
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~---------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i-~~d~~~~-------  104 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR---------PELKLTLLESNHKKVAFLREVKAELGLNNVEIV-NGRAEDF-------  104 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEE-ecchhhc-------
Confidence            37899999999999999988653         567999999997 21          23467888 8887652       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                        ..+++||+|+++..               ......+..+.++|+|||.+++.. ......++....++
T Consensus       105 --~~~~~fD~I~s~~~---------------~~~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~e~  156 (181)
T TIGR00138       105 --QHEEQFDVITSRAL---------------ASLNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAKRK  156 (181)
T ss_pred             --cccCCccEEEehhh---------------hCHHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHHHh
Confidence              12568999999641               112345677899999999999853 33445666665555

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02244 tocopherol O-methyltransferase

Probab=99.37  E-value=2.9e-12  Score=111.77  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=73.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..++++.+          ++|+|+|+++ |.          .. +++.++ .+|+.+..    
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g----------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~-~~D~~~~~----  181 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG----------ANVKGITLSPVQAARANALAAAQGLSDKVSFQ-VADALNQP----  181 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-EcCcccCC----
Confidence            5678999999999999999998753          6999999997 21          12 357888 88887632    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          ++++.||+|++....    .+.       .....++.++.++|||||.|++..+
T Consensus       182 ----~~~~~FD~V~s~~~~----~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        182 ----FEDGQFDLVWSMESG----EHM-------PDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ----CCCCCccEEEECCch----hcc-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                567899999995532    111       1234688899999999999998654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.36  E-value=5.6e-12  Score=105.25  Aligned_cols=99  Identities=14%  Similarity=0.262  Sum_probs=70.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|..+..+++....       +.++|+|+|+++ |.          .. .++.++ .+|+.+     
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~-~~d~~~-----  120 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVI-EGDIRD-----  120 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE-eCChhh-----
Confidence            457889999999999999888875310       567999999997 32          11 257788 888765     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                           ++...+|+|++....     +..+    ......++.++.+.|+|||.|++..
T Consensus       121 -----~~~~~~D~vv~~~~l-----~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        121 -----IAIENASMVVLNFTL-----QFLE----PSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             -----CCCCCCCEEehhhHH-----HhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                 223458999986532     1111    1224578899999999999998754

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.36  E-value=1.2e-12  Score=101.10  Aligned_cols=100  Identities=21%  Similarity=0.294  Sum_probs=75.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.+.+|||+|||+|.++..+++..+        +.++++|+|+++ |          ...++++++ ++|+.+.+     
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~--------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~-~~d~~~l~-----   67 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELN--------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFI-QGDIEDLP-----   67 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHST--------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEE-ESBTTCGC-----
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcC--------CCCEEEEEECcHHHHHHhhcccccccccccceE-Eeehhccc-----
Confidence            3578999999999999999997655        678999999997 2          135578999 99998832     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                       ..++ +.||+|+++...     +.      ......++..+.++|++||.+++..+.
T Consensus        68 -~~~~-~~~D~I~~~~~l-----~~------~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   68 -QELE-EKFDIIISNGVL-----HH------FPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             -GCSS-TTEEEEEEESTG-----GG------TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -cccC-CCeeEEEEcCch-----hh------ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence             1122 689999997643     11      112346788999999999999987665

...

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.36  E-value=1e-11  Score=111.99  Aligned_cols=124  Identities=25%  Similarity=0.319  Sum_probs=86.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..+|.+|||+|||||+.+.++++.++        +.++|+|+|+++ +.          .+.++.++ .+|..+.     
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~--------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~-~~Da~~~-----  313 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQ--------NRGQITAVDRYPQKLEKIRSHASALGITIIETI-EGDARSF-----  313 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEE-eCccccc-----
Confidence            35789999999999999999998875        457999999997 21          23356777 7887652     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcc--------cH---HHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREM--------DH---DLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~--------d~---~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~  193 (229)
                          .++..||+|++|+++...|....        ..   .....+...+|..+.++|+|||.++..+.+-   .+...+
T Consensus       314 ----~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v  389 (445)
T PRK14904        314 ----SPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQI  389 (445)
T ss_pred             ----ccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHH
Confidence                23567999999988655554211        11   1122345678999999999999999876543   233334


Q ss_pred             HHHHHhh
Q psy1489         194 EESITRF  200 (229)
Q Consensus       194 ~~~l~~~  200 (229)
                      ...++.+
T Consensus       390 ~~~l~~~  396 (445)
T PRK14904        390 EAFLQRH  396 (445)
T ss_pred             HHHHHhC
Confidence            4555554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.35  E-value=7.1e-12  Score=101.22  Aligned_cols=126  Identities=21%  Similarity=0.232  Sum_probs=87.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..++...+        +.++|+++|+++ +.          . ..++.++ .+|..+.    
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~--------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~-~~d~~~~----  104 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVG--------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI-KGEAPEI----  104 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE-Eechhhh----
Confidence            45789999999999999999988765        567999999996 21          1 2456677 6775441    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI  206 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~  206 (229)
                       +.. + ...||+|+++...              .....++..+.++|+|||.+++.........++...++.....+++
T Consensus       105 -l~~-~-~~~~D~V~~~~~~--------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~  167 (198)
T PRK00377        105 -LFT-I-NEKFDRIFIGGGS--------------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI  167 (198)
T ss_pred             -Hhh-c-CCCCCEEEECCCc--------------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence             111 2 3579999995421              1124678889999999999987554444556777777654225666


Q ss_pred             EcCCCCCC
Q psy1489         207 LKPPSSRS  214 (229)
Q Consensus       207 ~kp~~sr~  214 (229)
                      .....+|.
T Consensus       168 ~~~~~~~~  175 (198)
T PRK00377        168 TEVIIAKG  175 (198)
T ss_pred             EEEehhhc
Confidence            66655554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.35  E-value=7e-12  Score=105.97  Aligned_cols=97  Identities=29%  Similarity=0.391  Sum_probs=72.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|.+|||+|||+|.++..+++..+        +.++|+|+|+++ |.          .+.++.+. .+|+.+..    
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~-~~d~~~l~----  141 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVG--------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFR-LGEIEALP----  141 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEE-EcchhhCC----
Confidence            56899999999999999888888776        567999999986 21          13466777 78765521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                          ++++.||+|+++.....    ..+       ...++.++.++|||||+|++.
T Consensus       142 ----~~~~~fD~Vi~~~v~~~----~~d-------~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        142 ----VADNSVDVIISNCVINL----SPD-------KERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             ----CCCCceeEEEEcCcccC----CCC-------HHHHHHHHHHHcCCCcEEEEE
Confidence                44678999999765321    111       236788999999999999875

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.34  E-value=1.2e-11  Score=98.92  Aligned_cols=105  Identities=22%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|..+..++...         +.++|+|+|+++ |.          .+.+++++ .+|+.+..    
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~---------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~-~~d~~~~~----  108 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIAR---------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVV-HGRAEEFG----  108 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE-eccHhhCC----
Confidence            5568999999999999999988764         568999999996 21          23457788 88766521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                          . +++||+|+++...               .....+..+.++|+|||.+++.... .....+.+...
T Consensus       109 ----~-~~~fDlV~~~~~~---------------~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~  158 (187)
T PRK00107        109 ----Q-EEKFDVVTSRAVA---------------SLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPK  158 (187)
T ss_pred             ----C-CCCccEEEEcccc---------------CHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHH
Confidence                2 5689999995411               1246778899999999999986543 23344444444

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.34  E-value=3.4e-12  Score=107.85  Aligned_cols=106  Identities=23%  Similarity=0.216  Sum_probs=68.7

Q ss_pred             hHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEec
Q psy1489          49 LLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSK  116 (229)
Q Consensus        49 l~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~  116 (229)
                      +..+.++.+ +++|++|||||||.|+++.+++++.+          ++|+|+.+|+-           ..++ .+++. .
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~-~  118 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG----------CHVTGITLSEEQAEYARERIREAGLEDRVEVR-L  118 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE-E
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-E
Confidence            444455555 68999999999999999999999875          79999999961           1222 46677 7


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .|..+          + +.+||.|+|-.+..-.|.         ......++.+.++|+|||.+++..+.
T Consensus       119 ~D~~~----------~-~~~fD~IvSi~~~Ehvg~---------~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  119 QDYRD----------L-PGKFDRIVSIEMFEHVGR---------KNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             S-GGG--------------S-SEEEEESEGGGTCG---------GGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             eeccc----------c-CCCCCEEEEEechhhcCh---------hHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            77665          2 238999999554321111         12346788899999999999987654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.34  E-value=2.5e-11  Score=101.03  Aligned_cols=133  Identities=23%  Similarity=0.258  Sum_probs=90.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+.+|||+|||+|.++..+++..         +..+++|+|+++ +          ..+.++.++ .+|+.+.       
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~-------  149 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER---------PDARVTAVDISPEALAVARKNAARLGLDNVTFL-QSDWFEP-------  149 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE-ECchhcc-------
Confidence            35689999999999999999875         557999999986 2          123357777 8887652       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCC-ccc-HH-------------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMR-EMD-HD-------------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~-~~d-~~-------------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                        +++++||+|++|++....+.. ... ..             ........++..+.++|+|||.+++.+- .....++.
T Consensus       150 --~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-~~~~~~~~  226 (251)
T TIGR03534       150 --LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-YDQGEAVR  226 (251)
T ss_pred             --CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-ccHHHHHH
Confidence              346789999998764321110 000 00             0122335778899999999999998652 23345666


Q ss_pred             HHHHhh-CCeeEEEcCCCCC
Q psy1489         195 ESITRF-YSQVKILKPPSSR  213 (229)
Q Consensus       195 ~~l~~~-F~~v~~~kp~~sr  213 (229)
                      +.++.. |..+.+.++...+
T Consensus       227 ~~l~~~gf~~v~~~~d~~~~  246 (251)
T TIGR03534       227 ALFEAAGFADVETRKDLAGK  246 (251)
T ss_pred             HHHHhCCCCceEEEeCCCCC
Confidence            666653 8888888875543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.34  E-value=1.2e-11  Score=91.47  Aligned_cols=95  Identities=24%  Similarity=0.345  Sum_probs=69.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..++++.         +.++|+|+|+++ +.          ..++++++ .+|+.+..    
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~----   82 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLV---------PNGRVYAIERNPEALRLIERNARRFGVSNIVIV-EGDAPEAL----   82 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEE-eccccccC----
Confidence            3567899999999999999999876         457999999986 11          13456777 67755310    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        . ....+||+|+++..+              .....+++.+.++|+|||.|++.+
T Consensus        83 --~-~~~~~~D~v~~~~~~--------------~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        83 --E-DSLPEPDRVFIGGSG--------------GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             --h-hhcCCCCEEEECCcc--------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence              0 113589999996532              112477899999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.33  E-value=1.4e-12  Score=91.81  Aligned_cols=87  Identities=23%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             EeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        66 LDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ||+|||+|..+..++++          +...|+|+|+++ +       ....++.+. .+|+++..        +++++|
T Consensus         1 LdiG~G~G~~~~~l~~~----------~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~--------~~~~sf   61 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR----------GGASVTGIDISEEMLEQARKRLKNEGVSFR-QGDAEDLP--------FPDNSF   61 (95)
T ss_dssp             EEET-TTSHHHHHHHHT----------TTCEEEEEES-HHHHHHHHHHTTTSTEEEE-ESBTTSSS--------S-TT-E
T ss_pred             CEecCcCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHhcccccCchhe-eehHHhCc--------cccccc
Confidence            89999999999999987          247999999997 2       122345577 88888842        668899


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      |+|++....           ..++....+++++.|+|||||.+++
T Consensus        62 D~v~~~~~~-----------~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   62 DVVFSNSVL-----------HHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEEESHG-----------GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccce-----------eeccCHHHHHHHHHHHcCcCeEEeC
Confidence            999996543           1114456899999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.33  E-value=2.9e-11  Score=96.01  Aligned_cols=125  Identities=16%  Similarity=0.044  Sum_probs=83.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.+|||+|||+|.++..+++..           .+|+|+|+++ +..         -.+++++ .+|+.+.        
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~--------   78 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG-----------KCILTTDINPFAVKELRENAKLNNVGLDVV-MTDLFKG--------   78 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHHcCCceEEE-Ecccccc--------
Confidence            46789999999999999988753           2899999997 210         0135666 7776551        


Q ss_pred             HhCCCCccEEEeCCCCCCCC-CCcccHHH---------HHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         131 ILKDDKLDVVLSDMAPNATG-MREMDHDL---------ITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g-~~~~d~~~---------~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                       . .++||+|+++.+..... ....+...         ........+..+.++|+|||.+++......+..++++.+++.
T Consensus        79 -~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~  156 (179)
T TIGR00537        79 -V-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER  156 (179)
T ss_pred             -c-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence             2 35899999987642111 00000100         122356789999999999999998766555578888888776


Q ss_pred             CCeeEEE
Q psy1489         201 YSQVKIL  207 (229)
Q Consensus       201 F~~v~~~  207 (229)
                      --.+++.
T Consensus       157 gf~~~~~  163 (179)
T TIGR00537       157 GFRYEIV  163 (179)
T ss_pred             CCeEEEE
Confidence            3334444

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.32  E-value=9.2e-12  Score=100.54  Aligned_cols=92  Identities=25%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++.+++++ +          .+|+|+|+|+ +.          .+.++++. ..|+.+..      
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~-g----------~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~-~~d~~~~~------   91 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN-G----------FDVTAWDKNPMSIANLERIKAAENLDNLHTA-VVDLNNLT------   91 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C----------CEEEEEeCCHHHHHHHHHHHHHcCCCcceEE-ecChhhCC------
Confidence            5689999999999999999875 2          5999999997 21          22346666 67765421      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                        + ++.||+|++....         ++.........+..+.++|+|||.+++
T Consensus        92 --~-~~~fD~I~~~~~~---------~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         92 --F-DGEYDFILSTVVL---------MFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             --c-CCCcCEEEEecch---------hhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence              2 4579999997643         111122356788999999999999654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.32  E-value=6.1e-12  Score=109.08  Aligned_cols=121  Identities=21%  Similarity=0.135  Sum_probs=84.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ..++.+|||||||+|.++..+++..         +..+|+++|+++ |.       ...++.++ .+|+.+..       
T Consensus       111 ~~~~~~VLDLGcGtG~~~l~La~~~---------~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i-~gD~e~lp-------  173 (340)
T PLN02490        111 SDRNLKVVDVGGGTGFTTLGIVKHV---------DAKNVTILDQSPHQLAKAKQKEPLKECKII-EGDAEDLP-------  173 (340)
T ss_pred             CCCCCEEEEEecCCcHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhhhccCCeEE-eccHHhCC-------
Confidence            3567899999999999999988876         346899999986 31       12456777 77765521       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----------------CCChHHHH
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----------------GRNRPQLE  194 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----------------~~~~~~~~  194 (229)
                       ++++.||+|++......     .      .....+++++.++|+|||.+++....                ....+++.
T Consensus       174 -~~~~sFDvVIs~~~L~~-----~------~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~  241 (340)
T PLN02490        174 -FPTDYADRYVSAGSIEY-----W------PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYI  241 (340)
T ss_pred             -CCCCceeEEEEcChhhh-----C------CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHH
Confidence             45678999999654311     1      11246789999999999998764211                12346777


Q ss_pred             HHHHhh-CCeeEEEc
Q psy1489         195 ESITRF-YSQVKILK  208 (229)
Q Consensus       195 ~~l~~~-F~~v~~~k  208 (229)
                      +.+++. |..+++..
T Consensus       242 ~lL~~aGF~~V~i~~  256 (340)
T PLN02490        242 EWFTKAGFKDVKLKR  256 (340)
T ss_pred             HHHHHCCCeEEEEEE
Confidence            778776 87776654

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=7.1e-11  Score=96.06  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=107.4

Q ss_pred             hcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C----CCCCCC
Q psy1489          38 KENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I----YPIDGA  111 (229)
Q Consensus        38 ~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~----~~~~~~  111 (229)
                      ...|.||+++||....+.|.+..+|..+||+|+.||+|+..++++          ++.+|+|+|...  +    ..-+++
T Consensus        56 ~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~----------gAk~VyavDVG~~Ql~~kLR~d~rV  125 (245)
T COG1189          56 EQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR----------GAKHVYAVDVGYGQLHWKLRNDPRV  125 (245)
T ss_pred             CcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc----------CCcEEEEEEccCCccCHhHhcCCcE
Confidence            457999999999999999999889999999999999999999987          457999999986  2    223455


Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----  187 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----  187 (229)
                      ...+..|+....     .+.+. +..|++++|.++           .+   ...+|..+..+++|+|.++.-+=+.    
T Consensus       126 ~~~E~tN~r~l~-----~~~~~-~~~d~~v~DvSF-----------IS---L~~iLp~l~~l~~~~~~~v~LvKPQFEag  185 (245)
T COG1189         126 IVLERTNVRYLT-----PEDFT-EKPDLIVIDVSF-----------IS---LKLILPALLLLLKDGGDLVLLVKPQFEAG  185 (245)
T ss_pred             EEEecCChhhCC-----HHHcc-cCCCeEEEEeeh-----------hh---HHHHHHHHHHhcCCCceEEEEecchhhhh
Confidence            555456655432     11232 378999998864           22   2356777888899999887644110    


Q ss_pred             ------------CC-----hHHHHHHHHhh-CCeeEEEc-CCCCCCCCceEEEEec
Q psy1489         188 ------------RN-----RPQLEESITRF-YSQVKILK-PPSSRSHSAELFLLGR  224 (229)
Q Consensus       188 ------------~~-----~~~~~~~l~~~-F~~v~~~k-p~~sr~~s~E~Y~v~~  224 (229)
                                  +.     ...+...+... |.-..+.+ |......|.|.++-.+
T Consensus       186 r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~  241 (245)
T COG1189         186 REQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLK  241 (245)
T ss_pred             hhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCCCcEeeeeeee
Confidence                        00     23344444444 54444443 6666677777665443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.31  E-value=6.1e-11  Score=104.81  Aligned_cols=146  Identities=15%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--------C-CCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--------I-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--------~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++++.+|||+|||+|.++..++...         +..+|+|+|+|+ +..        . .++.++ ++|+.+..    +
T Consensus       249 l~~~~rVLDLGcGSG~IaiaLA~~~---------p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi-~gDl~e~~----l  314 (423)
T PRK14966        249 LPENGRVWDLGTGSGAVAVTVALER---------PDAFVRASDISPPALETARKNAADLGARVEFA-HGSWFDTD----M  314 (423)
T ss_pred             cCCCCEEEEEeChhhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE-Ecchhccc----c
Confidence            3456799999999999999988765         567999999997 210        1 147788 88876531    0


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcc-------cHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREM-------DHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~-------d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                         ..+++||+|+||++.-..+....       ++.       .-++....++..+.++|+|||.+++.+-. .....+.
T Consensus       315 ---~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~  390 (423)
T PRK14966        315 ---PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVR  390 (423)
T ss_pred             ---ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHH
Confidence               11357999999986322211111       000       11223457888899999999999987643 3346677


Q ss_pred             HHHHhh-CCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         195 ESITRF-YSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       195 ~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      +.+... |..+++.|.-+.+    +.+++++..
T Consensus       391 ~ll~~~Gf~~v~v~kDl~G~----dR~v~~~~~  419 (423)
T PRK14966        391 GVLAENGFSGVETLPDLAGL----DRVTLGKYM  419 (423)
T ss_pred             HHHHHCCCcEEEEEEcCCCC----cEEEEEEEh
Confidence            777664 7888888774443    556666543

>TIGR00740 methyltransferase, putative

Probab=99.31  E-value=1.6e-11  Score=101.82  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C---CCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P---IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~---~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..++++...       +.++++|+|+++ |.        .   ..++.++ .+|+.+.    
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~-------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~-~~d~~~~----  118 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEIL-CNDIRHV----  118 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE-ECChhhC----
Confidence            357789999999999999999887421       467999999996 31        1   1246778 8887662    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                            +...+|+|++....         ++........++.++.++|+|||.|++..
T Consensus       119 ------~~~~~d~v~~~~~l---------~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       119 ------EIKNASMVILNFTL---------QFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ------CCCCCCEEeeecch---------hhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence                  23458999986643         11111234578899999999999998864

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.31  E-value=4.7e-12  Score=101.97  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=82.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ...+|||+|||+|.++..++++.         |...|+|+|+++ +          ..+.++.++ ++|+.+.     ..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~---------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i-~~d~~~~-----~~   80 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN---------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVL-CGDANEL-----LD   80 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEE-ccCHHHH-----HH
Confidence            45699999999999999999875         678999999986 2          124578888 8887652     22


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      ..++++.+|.|+++.+......   .+....-.....+.++.++|||||.|++.+........+++.+...
T Consensus        81 ~~~~~~~~d~v~~~~pdpw~k~---~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        81 KFFPDGSLSKVFLNFPDPWPKK---RHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN  148 (194)
T ss_pred             hhCCCCceeEEEEECCCcCCCC---CccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence            2345668999999864211110   0100001124678899999999999988765544445555666554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.31  E-value=2e-11  Score=105.65  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|.+|||+|||+|.++..++...          ...|+|+|+++ |.           ...++.++ .+|+.+..     
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g----------~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~-~~d~e~lp-----  185 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAG----------AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLL-PLGIEQLP-----  185 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcC----------CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEE-eCCHHHCC-----
Confidence            57899999999999999988763          24799999987 21           01357777 77765521     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--C-------------------
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--G-------------------  187 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~-------------------  187 (229)
                         + ++.||+|+|....           .+.......+..+.+.|+|||.|++..+.  +                   
T Consensus       186 ---~-~~~FD~V~s~~vl-----------~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~  250 (322)
T PRK15068        186 ---A-LKAFDTVFSMGVL-----------YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY  250 (322)
T ss_pred             ---C-cCCcCEEEECChh-----------hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence               2 5689999995432           11122356789999999999999976421  0                   


Q ss_pred             --CChHHHHHHHHhh-CCeeEEEcC
Q psy1489         188 --RNRPQLEESITRF-YSQVKILKP  209 (229)
Q Consensus       188 --~~~~~~~~~l~~~-F~~v~~~kp  209 (229)
                        +....+...|++. |..+++...
T Consensus       251 ~lps~~~l~~~L~~aGF~~i~~~~~  275 (322)
T PRK15068        251 FIPSVPALKNWLERAGFKDVRIVDV  275 (322)
T ss_pred             eCCCHHHHHHHHHHcCCceEEEEeC
Confidence              1234566666665 887777644

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.30  E-value=6.1e-11  Score=107.01  Aligned_cols=110  Identities=22%  Similarity=0.221  Sum_probs=81.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||||+.|.+++..++        ..+.|+++|+++-           ..+.++.+. ..|....     
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~--------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~-~~D~~~~-----  176 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMN--------NQGAIVANEYSASRVKVLHANISRCGVSNVALT-HFDGRVF-----  176 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-eCchhhh-----
Confidence            36899999999999999999999886        5689999999861           123456666 6665542     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccH-----------HHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDH-----------DLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----------~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ...+ ...||.|+.|+++...|..-.+.           .....++..+|..|.++|||||++|-.+
T Consensus       177 -~~~~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        177 -GAAL-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             -hhhc-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence             1222 35799999999987666643332           1233466789999999999999997554

>TIGR00452 methyltransferase, putative

Probab=99.30  E-value=3.4e-11  Score=103.55  Aligned_cols=106  Identities=11%  Similarity=0.040  Sum_probs=69.8

Q ss_pred             hhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEE
Q psy1489          47 FKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVL  114 (229)
Q Consensus        47 ~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~  114 (229)
                      .+...+..... ..+|.+|||+|||+|.++..++...          ...|+|+|+++ |.           ....+.+.
T Consensus       108 ~~~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g----------~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~  176 (314)
T TIGR00452       108 IKWDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHG----------AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILE  176 (314)
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcC----------CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            33333333333 2457899999999999988877652          34899999997 31           11234555


Q ss_pred             ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ..++.+.         -....||+|+|....           .+.......|.++.+.|+|||.|++..
T Consensus       177 -~~~ie~l---------p~~~~FD~V~s~gvL-----------~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       177 -PLGIEQL---------HELYAFDTVFSMGVL-----------YHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             -ECCHHHC---------CCCCCcCEEEEcchh-----------hccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence             5554431         113479999996542           111223568899999999999999764

Known examples to date are restricted to the proteobacteria.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.30  E-value=2.4e-11  Score=103.65  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      ..++.+|||+|||+|.++..+++.          +..+|+|+|+++. .          .+. .+.+. .++...     
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~----------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~-~~~~~~-----  220 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKL----------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVK-LIYLEQ-----  220 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEE-eccccc-----
Confidence            346899999999999999887754          3468999999972 1          111 12333 333111     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI  206 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~  206 (229)
                           ..+++||+|+++...              +....++..+.++|+|||.+++..+......++.+.+++.|..+.+
T Consensus       221 -----~~~~~fDlVvan~~~--------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~  281 (288)
T TIGR00406       221 -----PIEGKADVIVANILA--------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEI  281 (288)
T ss_pred             -----ccCCCceEEEEecCH--------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeE
Confidence                 235689999997631              1224577889999999999999877666677788877776655544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=99.30  E-value=2.4e-11  Score=104.20  Aligned_cols=119  Identities=24%  Similarity=0.327  Sum_probs=83.2

Q ss_pred             CccchhhhhhHhhhhhcC-------ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----C
Q psy1489          40 NYRCRSAFKLLEIDSKIK-------FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----I  108 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~-------~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----~  108 (229)
                      +.+||+++||.++...|.       .+.+|.++|||||+||+|+..++++.           .+|+|||..+|.+    .
T Consensus       183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG-----------~~V~AVD~g~l~~~L~~~  251 (357)
T PRK11760        183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRG-----------MFVTAVDNGPMAQSLMDT  251 (357)
T ss_pred             CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcC-----------CEEEEEechhcCHhhhCC
Confidence            678999999999855553       46789999999999999999999862           4999999988753    3


Q ss_pred             CCCeEEecCCCCChhHHHHHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC--CEEE--Ee
Q psy1489         109 DGAVVLSKCDFTQPDIQDRLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG--ADCL--IK  183 (229)
Q Consensus       109 ~~~~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg--G~~v--~~  183 (229)
                      +++... .+|....         .+ .+.+|+|+|||...               ...+...+.++|..|  ..+|  +|
T Consensus       252 ~~V~h~-~~d~fr~---------~p~~~~vDwvVcDmve~---------------P~rva~lm~~Wl~~g~cr~aIfnLK  306 (357)
T PRK11760        252 GQVEHL-RADGFKF---------RPPRKNVDWLVCDMVEK---------------PARVAELMAQWLVNGWCREAIFNLK  306 (357)
T ss_pred             CCEEEE-eccCccc---------CCCCCCCCEEEEecccC---------------HHHHHHHHHHHHhcCcccEEEEEEE
Confidence            567777 6654431         22 56899999999631               234556677777665  3444  34


Q ss_pred             ecCCCChHHHH
Q psy1489         184 IWDGRNRPQLE  194 (229)
Q Consensus       184 ~~~~~~~~~~~  194 (229)
                      .....+..++.
T Consensus       307 lpmk~r~~~v~  317 (357)
T PRK11760        307 LPMKKRYEEVR  317 (357)
T ss_pred             cCCCCCHHHHH
Confidence            33334444433

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.29  E-value=2.9e-12  Score=104.40  Aligned_cols=99  Identities=25%  Similarity=0.367  Sum_probs=66.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC--CCe----EEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID--GAV----VLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~--~~~----~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +|.+|||+|||-|.++..+|+. |          ..|+|+|+++ .+++  ..+    .+ ..|....... ++.  ..+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~-G----------a~VtgiD~se-~~I~~Ak~ha~e~gv-~i~y~~~~~e-dl~--~~~  122 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL-G----------ASVTGIDASE-KPIEVAKLHALESGV-NIDYRQATVE-DLA--SAG  122 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC-C----------CeeEEecCCh-HHHHHHHHhhhhccc-cccchhhhHH-HHH--hcC
Confidence            6899999999999999999975 2          6999999997 1221  100    01 1122111111 121  123


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ++||+|+|           ++-..+......+++.+.+++||||.+++....
T Consensus       123 ~~FDvV~c-----------mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         123 GQFDVVTC-----------MEVLEHVPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             CCccEEEE-----------hhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            79999999           233344445667899999999999999887643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.29  E-value=8e-11  Score=99.45  Aligned_cols=132  Identities=21%  Similarity=0.229  Sum_probs=89.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..++...         +..+|+|+|+++ +          ....++.++ .+|+.+.      
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~-~~d~~~~------  170 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKER---------PDAEVTAVDISPEALAVARRNAKHGLGARVEFL-QGDWFEP------  170 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEE-EccccCc------
Confidence            356799999999999999999876         567999999996 1          012357777 8887552      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCc-c-cHH-------------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMRE-M-DHD-------------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL  193 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~-~-d~~-------------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~  193 (229)
                         +.+++||+|++|++....+... . ...             ..+.....++..+.++|+|||.+++.+-. .....+
T Consensus       171 ---~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~  246 (275)
T PRK09328        171 ---LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAV  246 (275)
T ss_pred             ---CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHH
Confidence               2246899999987632211100 0 000             12344567888999999999999986532 233456


Q ss_pred             HHHHHhh-CCeeEEEcCCC
Q psy1489         194 EESITRF-YSQVKILKPPS  211 (229)
Q Consensus       194 ~~~l~~~-F~~v~~~kp~~  211 (229)
                      ...+... |..+.+.++..
T Consensus       247 ~~~l~~~gf~~v~~~~d~~  265 (275)
T PRK09328        247 RALLAAAGFADVETRKDLA  265 (275)
T ss_pred             HHHHHhCCCceeEEecCCC
Confidence            6666553 77888887644

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.27  E-value=4e-11  Score=98.63  Aligned_cols=99  Identities=17%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C-CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P-IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~-~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ++.+|||+|||+|.++..+++..         +..+++++|+++ +.     . .+++.++ .+|+.+..        ++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-~~d~~~~~--------~~   95 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRF---------PQAEFIALDISAGMLAQAKTKLSENVQFI-CGDAEKLP--------LE   95 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhC---------CCCcEEEEeChHHHHHHHHHhcCCCCeEE-ecchhhCC--------CC
Confidence            34789999999999999998875         567899999986 21     1 1356777 78876521        35


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      +++||+|+++....           .......++..+.++|+|||.+++..+...
T Consensus        96 ~~~fD~vi~~~~l~-----------~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072        96 DSSFDLIVSNLALQ-----------WCDDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             CCceeEEEEhhhhh-----------hccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            67899999976431           111234688899999999999998776543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.26  E-value=1.7e-10  Score=100.54  Aligned_cols=116  Identities=21%  Similarity=0.236  Sum_probs=80.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ..+|||||||+|.++..++++.         +..+|+++|++++ .          .+ ..+++ ..|+...        
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~-~~D~~~~--------  257 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHS---------PKIRLTLSDVSAAALESSRATLAANGL-EGEVF-ASNVFSD--------  257 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEE-Ecccccc--------
Confidence            4589999999999999999875         5679999999962 1          11 23455 5665431        


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~  207 (229)
                       . ++.||+|+||++... +..     .........+..+.++|+|||.+++..-......   ..+.+.|..+++.
T Consensus       258 -~-~~~fDlIvsNPPFH~-g~~-----~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~---~~l~~~Fg~~~~l  323 (342)
T PRK09489        258 -I-KGRFDMIISNPPFHD-GIQ-----TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP---DLLDETFGSHEVL  323 (342)
T ss_pred             -c-CCCccEEEECCCccC-Ccc-----ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH---HHHHHHcCCeEEE
Confidence             2 468999999886521 111     1123456789999999999999988664433333   4555668777765

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.26  E-value=1.1e-10  Score=99.53  Aligned_cols=131  Identities=18%  Similarity=0.254  Sum_probs=88.8

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+|||+|||+|.++..++...         +..+|+|+|+++ +.          ... ++.++ ++|+.+.        
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~---------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~-~~d~~~~--------  177 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF---------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFI-QSNLFEP--------  177 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECchhcc--------
Confidence            689999999999999999875         557999999997 11          122 37788 8887652        


Q ss_pred             HhCCCCccEEEeCCCCCCCCC-------CcccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         131 ILKDDKLDVVLSDMAPNATGM-------REMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~-------~~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                       +++.+||+|++|++.-....       ...+..       .-+.....++..+.++|+|||.+++.+... ....+.+.
T Consensus       178 -~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~  255 (284)
T TIGR00536       178 -LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKEL  255 (284)
T ss_pred             -CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHH
Confidence             33447999999876321110       000000       112356678899999999999999977542 23455566


Q ss_pred             HHh--hCCeeEEEcCCCCC
Q psy1489         197 ITR--FYSQVKILKPPSSR  213 (229)
Q Consensus       197 l~~--~F~~v~~~kp~~sr  213 (229)
                      +..  -|..+.+.|.-+.+
T Consensus       256 ~~~~~~~~~~~~~~D~~g~  274 (284)
T TIGR00536       256 LRIKFTWYDVENGRDLNGK  274 (284)
T ss_pred             HHhcCCCceeEEecCCCCC
Confidence            653  37888888874443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14967 putative methyltransferase; Provisional

Probab=99.25  E-value=8.2e-11  Score=96.74  Aligned_cols=122  Identities=18%  Similarity=0.129  Sum_probs=79.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------C--CCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------I--DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~--~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..+++.          +..+|+++|+++ +..       .  .++.++ .+|+.+       
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~----------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~-~~d~~~-------   95 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA----------GAGSVTAVDISRRAVRSARLNALLAGVDVDVR-RGDWAR-------   95 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEE-ECchhh-------
Confidence            457889999999999999988864          235899999997 211       1  135566 677654       


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCC---CcccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGM---REMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~---~~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                        .++++.||+|++|++......   ......       ........++..+.++|+|||.+++..-......+++..++
T Consensus        96 --~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~  173 (223)
T PRK14967         96 --AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS  173 (223)
T ss_pred             --hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence              134678999999975321110   000000       11233467888999999999999874433335566777776


Q ss_pred             hh
Q psy1489         199 RF  200 (229)
Q Consensus       199 ~~  200 (229)
                      ..
T Consensus       174 ~~  175 (223)
T PRK14967        174 EA  175 (223)
T ss_pred             HC
Confidence            53

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.25  E-value=3.8e-11  Score=96.80  Aligned_cols=94  Identities=19%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------CCC--CeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------IDG--AVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~~~--~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.+|||+|||+|.++.+++++ +          .+|+|+|+++ |..       ..+  +.+. ..|+...        
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~-g----------~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~-~~d~~~~--------   89 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA-G----------YDVRAWDHNPASIASVLDMKARENLPLRTD-AYDINAA--------   89 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHHHhCCCceeE-eccchhc--------
Confidence            3579999999999999999975 2          5999999997 211       012  3444 4554331        


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+ +.+||+|++.....     ..    ........++.+.++|+|||.+++..
T Consensus        90 ~~-~~~fD~I~~~~~~~-----~~----~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        90 AL-NEDYDFIFSTVVFM-----FL----QAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             cc-cCCCCEEEEecccc-----cC----CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            12 35799999966431     11    11234577899999999999965543

Part of a tellurite-reducing operon tehA and tehB

>PRK14968 putative methyltransferase; Provisional

Probab=99.24  E-value=3.6e-10  Score=89.81  Aligned_cols=120  Identities=25%  Similarity=0.303  Sum_probs=81.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCC--CeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDG--AVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~--~~~~~~~D~~~~~~~~  126 (229)
                      .++.+|||+|||+|.++..++.+ +          .+|+|+|+++ +.          ...+  +.++ .+|+.+.    
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~----------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~----   85 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-G----------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI-RSDLFEP----   85 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-c----------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEE-ecccccc----
Confidence            56789999999999999998876 3          6999999997 21          1122  6677 7776542    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCC-Cccc---HH------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGM-REMD---HD------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~-~~~d---~~------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                           +.+..||+|+++.+....+. ....   ..      .........+..+.++|+|||.+++.+........+.+.
T Consensus        86 -----~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~  160 (188)
T PRK14968         86 -----FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEY  160 (188)
T ss_pred             -----ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHH
Confidence                 33458999999865322110 0000   00      012334577899999999999998866555556677777


Q ss_pred             HHhh
Q psy1489         197 ITRF  200 (229)
Q Consensus       197 l~~~  200 (229)
                      +...
T Consensus       161 ~~~~  164 (188)
T PRK14968        161 LEKL  164 (188)
T ss_pred             HHHC
Confidence            7765

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.24  E-value=9.9e-12  Score=91.45  Aligned_cols=103  Identities=24%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      |.+|||+|||+|.++..+++..          ..+++|+|+++..           .. ..++++ .+|+.+      ..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~-~~D~~~------~~   63 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVI-VGDARD------LP   63 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEE-ESHHHH------HH
T ss_pred             CCEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEE-ECchhh------ch
Confidence            5799999999999999988874          3699999999721           11 356788 887654      22


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..+.+++||+|++|++....   ..+......+....++.+.++|+|||.+++.+
T Consensus        64 ~~~~~~~~D~Iv~npP~~~~---~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   64 EPLPDGKFDLIVTNPPYGPR---SGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             HTCTTT-EEEEEE--STTSB---TT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccCceeEEEEECCCCccc---cccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            34667899999999875221   11111111134577889999999999998754

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.24  E-value=1.9e-11  Score=105.58  Aligned_cols=94  Identities=19%  Similarity=0.153  Sum_probs=67.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----------CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++.+|||+|||+|.++..+++.           .++|+|||+++ |..           ..++.++ .+|+.+      +
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~-~~dae~------l  192 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYL-CTTAEK------L  192 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEE-ecCHHH------h
Confidence            5779999999999999988763           26999999996 210           1246666 666544      2


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .  +.+++||+|++..           .+.++.....++.++.++|||||.+++.++
T Consensus       193 ~--~~~~~FD~Vi~~~-----------vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        193 A--DEGRKFDAVLSLE-----------VIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             h--hccCCCCEEEEhh-----------HHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            1  3457899999943           222233345788999999999999998753

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=99.24  E-value=1.7e-10  Score=106.57  Aligned_cols=182  Identities=15%  Similarity=0.252  Sum_probs=125.9

Q ss_pred             cCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---
Q psy1489          28 FADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---  104 (229)
Q Consensus        28 ~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---  104 (229)
                      ..+|-..-.+..-+..-|.||+..|...+++..  .-.|-.|-|+|+.+..+++..         |.++++=.-+.+   
T Consensus       291 ~qnPlISGLR~~Q~ATGAHYKlRsIL~~~~i~~--~d~l~~GDGSGGita~lLR~~---------p~sr~iFNSLL~~~~  359 (675)
T PF14314_consen  291 IQNPLISGLRLFQLATGAHYKLRSILKNLNIKY--RDALCGGDGSGGITACLLRMN---------PTSRGIFNSLLELDG  359 (675)
T ss_pred             ccCcchhhhhhhcccccchhhHHHHHHhcCCCc--ceeEEEecCchHHHHHHHHhC---------cccceeeeccccccC
Confidence            344443333333456778899999998888543  345788999999999999876         344443322211   


Q ss_pred             -----------------------CCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCccEEEeCCCCCCCCCCcccHHHH
Q psy1489         105 -----------------------IYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLDVVLSDMAPNATGMREMDHDLI  159 (229)
Q Consensus       105 -----------------------~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D~V~sd~~~~~~g~~~~d~~~~  159 (229)
                                             +.....++-. ..|+.++.+++.+.....  .-++|+|++||-.       .|....
T Consensus       360 ~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~-pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV-------~d~~~~  431 (675)
T PF14314_consen  360 SDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEH-PSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEV-------RDDSII  431 (675)
T ss_pred             CCCCCCCCCCcHHHhccCcccceeecchhhhcC-ccccCCccHHHHHHHHHhhcCCcccEEEEecee-------cChHHH
Confidence                                   1112234444 789999988887766433  3469999999942       233222


Q ss_pred             HHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489         160 TQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG  228 (229)
Q Consensus       160 ~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~  228 (229)
                      ...-..+...+..+|.++|++|+|+|-.   .....++..+-++|..|+.+.+..|-+.++|+|+||++++.
T Consensus       432 ~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~  503 (675)
T PF14314_consen  432 RKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKK  503 (675)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccC
Confidence            2222334456778889999999998754   22336788888999999999999999999999999999874

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.23  E-value=2.1e-11  Score=102.15  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++..           .+|+|+|+++ |.          . .+++.++ ++|+.+.     
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g-----------~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~-~~d~~~l-----  105 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG-----------HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFI-HCAAQDI-----  105 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHhcCCccceEEE-EcCHHHH-----
Confidence            456899999999999999998752           5899999997 31          1 1356777 7776552     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                       .. +.++.||+|++....           ..+.....++..+.++|||||.+++..+.
T Consensus       106 -~~-~~~~~fD~V~~~~vl-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        106 -AQ-HLETPVDLILFHAVL-----------EWVADPKSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             -hh-hcCCCCCEEEehhHH-----------HhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence             11 335789999995532           22223357889999999999999875544

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.23  E-value=4.2e-11  Score=101.37  Aligned_cols=102  Identities=15%  Similarity=0.151  Sum_probs=72.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ++.+|||+|||+|.++..+++..+.      .....|+|+|+++ |.     ..+++.+. .+|+.+..        +++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~------~~~~~v~giD~s~~~l~~A~~~~~~~~~~-~~d~~~lp--------~~~  149 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPE------ITTMQLFGLDISKVAIKYAAKRYPQVTFC-VASSHRLP--------FAD  149 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhccc------ccCCeEEEECCCHHHHHHHHHhCCCCeEE-EeecccCC--------CcC
Confidence            4578999999999999999887530      0123799999997 21     23567788 88877632        557


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE  195 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~  195 (229)
                      +.||+|++...+                  ..+.++.++|||||.|++.........++.+
T Consensus       150 ~sfD~I~~~~~~------------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~  192 (272)
T PRK11088        150 QSLDAIIRIYAP------------------CKAEELARVVKPGGIVITVTPGPRHLFELKG  192 (272)
T ss_pred             CceeEEEEecCC------------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHH
Confidence            789999985542                  1235688999999999986654444444433

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.22  E-value=4.4e-11  Score=97.65  Aligned_cols=92  Identities=23%  Similarity=0.356  Sum_probs=68.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++++|||+|||+|.++..+++..+        +.++|+++|+++ +.          ...++.++ .+|....     
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~--------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~-~gd~~~~-----  139 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVG--------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVI-VGDGTLG-----  139 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE-ECCcccC-----
Confidence            46899999999999999999998875        567999999996 21          23467888 8887652     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         ..+...||+|+++...     +            .+...+.+.|+|||++++-+
T Consensus       140 ---~~~~~~fD~I~~~~~~-----~------------~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 ---YEENAPYDRIYVTAAG-----P------------DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             ---CCcCCCcCEEEECCCc-----c------------cchHHHHHhhCCCcEEEEEE
Confidence               1235689999997642     1            11123566899999998854

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.22  E-value=4.9e-11  Score=97.53  Aligned_cols=93  Identities=26%  Similarity=0.372  Sum_probs=68.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..+++..+        +.++|+++|+++ +.          .+.+++++ .+|..+..    
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~--------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~-~~d~~~~~----  141 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVG--------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVI-VGDGTQGW----  141 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEE-ECCcccCC----
Confidence            46889999999999999999998865        457899999996 21          23567888 88876521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          .....||+|+++....                 .+...+.+.|+|||++++-+-
T Consensus       142 ----~~~~~fD~Ii~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       142 ----EPLAPYDRIYVTAAGP-----------------KIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             ----cccCCCCEEEEcCCcc-----------------cccHHHHHhcCcCcEEEEEEc
Confidence                1235899999976431                 122346778999999998543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.22  E-value=1.4e-10  Score=94.10  Aligned_cols=97  Identities=20%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+|||+|||+|.++..+++..         +..+++|+|+|+ |     ...+++.+. ++|+.++         +
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~---------~~~~v~giDiS~~~l~~A~~~~~~~~~~-~~d~~~~---------~  101 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLL---------PFKHIYGVEINEYAVEKAKAYLPNINII-QGSLFDP---------F  101 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHhhCCCCcEE-EeeccCC---------C
Confidence            4567899999999999999998765         457999999997 2     124567777 7887652         4


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      ++++||+|++.....        |. .......+++++.+++  ++.+++..+
T Consensus       102 ~~~sfD~V~~~~vL~--------hl-~p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       102 KDNFFDLVLTKGVLI--------HI-NPDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             CCCCEEEEEECChhh--------hC-CHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence            577999999966431        11 1133457788888887  455555443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.22  E-value=3.5e-10  Score=96.32  Aligned_cols=119  Identities=17%  Similarity=0.215  Sum_probs=80.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.          .+ .++.++ .+|+.+.      
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~-~~D~~~~------  184 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAF---------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLI-QSDLFAA------  184 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECchhhc------
Confidence            45789999999999999999875         567999999996 21          12 246778 8886541      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCC-Ccc------cHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGM-REM------DHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~-~~~------d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                         +++.+||+|++|++....+. ...      +..       .-+.....++..+.++|+|||.+++.+..  ....+.
T Consensus       185 ---~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~~v~  259 (284)
T TIGR03533       185 ---LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SMEALE  259 (284)
T ss_pred             ---cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHHHHH
Confidence               34557999999976321111 000      000       11234567889999999999999998754  224566


Q ss_pred             HHHHhh
Q psy1489         195 ESITRF  200 (229)
Q Consensus       195 ~~l~~~  200 (229)
                      ..+...
T Consensus       260 ~~~~~~  265 (284)
T TIGR03533       260 EAYPDV  265 (284)
T ss_pred             HHHHhC
Confidence            666553

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.22  E-value=1.5e-10  Score=96.86  Aligned_cols=122  Identities=20%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.+|||+|||+|.++..+++..         +..+|+|+|+++ +.       ...+.+++ ++|+.+.     +...+ 
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~---------~~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~-----l~~~~-  150 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL---------DGIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDA-----LPTAL-  150 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhh-----cchhc-
Confidence            4589999999999999998875         456899999997 21       11245777 8887652     11112 


Q ss_pred             CCCccEEEeCCCCCCCCCC-cccH-------H-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         134 DDKLDVVLSDMAPNATGMR-EMDH-------D-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~-~~d~-------~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                      .+.||+|++|++....+.. ..+.       .       .-++....++..+.++|+|||.+++.+.. .+..++...++
T Consensus       151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-~~~~~v~~~l~  229 (251)
T TIGR03704       151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-RQAPLAVEAFA  229 (251)
T ss_pred             CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-chHHHHHHHHH
Confidence            3579999999875332210 0000       0       11334567888899999999999987643 44567777776


Q ss_pred             hh
Q psy1489         199 RF  200 (229)
Q Consensus       199 ~~  200 (229)
                      .+
T Consensus       230 ~~  231 (251)
T TIGR03704       230 RA  231 (251)
T ss_pred             HC
Confidence            64

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.21  E-value=9.8e-11  Score=101.74  Aligned_cols=111  Identities=16%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||.|||+|+++..++.. +          .+++|+|+++ |.          ..+++.+. .+|+.+..    
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~-~----------~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~-~~D~~~l~----  243 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM-G----------AKVIGCDIDWKMVAGARINLEHYGIEDFFVK-RGDATKLP----  243 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh-C----------CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEE-ecchhcCC----
Confidence            467899999999999998876543 3          6899999997 31          23446777 88877632    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP  191 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~  191 (229)
                          +.++.||+|++|++.........+  ....+...++.++.++|+|||++++.+....+..
T Consensus       244 ----~~~~~~D~Iv~dPPyg~~~~~~~~--~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~  301 (329)
T TIGR01177       244 ----LSSESVDAIATDPPYGRSTTAAGD--GLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE  301 (329)
T ss_pred             ----cccCCCCEEEECCCCcCcccccCC--chHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence                235789999999875221110011  1224456889999999999999988665444433

This family is found exclusively in the Archaea.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.21  E-value=3.5e-11  Score=109.45  Aligned_cols=98  Identities=26%  Similarity=0.259  Sum_probs=72.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..+++..+          ++|+|+|+|+ +.        .. ..+.+. .+|+.+..     
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~-~~d~~~~~-----  327 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFD----------VHVVGIDLSVNMISFALERAIGRKCSVEFE-VADCTKKT-----  327 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcC----------CEEEEEECCHHHHHHHHHHhhcCCCceEEE-EcCcccCC-----
Confidence            46788999999999999999887643          6899999996 21        11 246777 88877632     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                         +++++||+|+|.....    +.       .....++.++.++|+|||.+++..+.
T Consensus       328 ---~~~~~fD~I~s~~~l~----h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        328 ---YPDNSFDVIYSRDTIL----HI-------QDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             ---CCCCCEEEEEECCccc----cc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence               4567899999965431    11       12357889999999999999987543

>PRK08317 hypothetical protein; Provisional

Probab=99.19  E-value=9.1e-11  Score=96.37  Aligned_cols=98  Identities=21%  Similarity=0.316  Sum_probs=72.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..++...+        +.++++|+|+++ +.         ...++.+. ..|+.+..     
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~-----   82 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVG--------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFV-RGDADGLP-----   82 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEE-ecccccCC-----
Confidence            46789999999999999999998875        567999999996 11         12356677 77776522     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         ++++.||+|++.....           .+.....++..+.++|+|||.+++..
T Consensus        83 ---~~~~~~D~v~~~~~~~-----------~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         83 ---FPDGSFDAVRSDRVLQ-----------HLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ---CCCCCceEEEEechhh-----------ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence               4467899999965431           11123467888999999999998754

>PRK05785 hypothetical protein; Provisional

Probab=99.19  E-value=6.8e-11  Score=97.48  Aligned_cols=88  Identities=23%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCC--CCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPI--DGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~--~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .++.+|||+|||||.++..+++..+          ++|+|+|+|+ |...  .....+ ++|+.+.        .+++++
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~~----------~~v~gvD~S~~Ml~~a~~~~~~~-~~d~~~l--------p~~d~s  110 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVFK----------YYVVALDYAENMLKMNLVADDKV-VGSFEAL--------PFRDKS  110 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhcC----------CEEEEECCCHHHHHHHHhccceE-EechhhC--------CCCCCC
Confidence            3578999999999999999887632          5999999998 4221  122345 6776552        256889


Q ss_pred             ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC
Q psy1489         137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG  177 (229)
Q Consensus       137 ~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg  177 (229)
                      ||+|++....     +..      .....+++++.++|||.
T Consensus       111 fD~v~~~~~l-----~~~------~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        111 FDVVMSSFAL-----HAS------DNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             EEEEEecChh-----hcc------CCHHHHHHHHHHHhcCc
Confidence            9999996643     211      23467899999999993

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.18  E-value=1e-11  Score=96.01  Aligned_cols=98  Identities=23%  Similarity=0.287  Sum_probs=67.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ..++.+|||+|||+|.++..+++. +          .+++|+|+++ +.....+... ..+...        ...+++.|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~~~g~D~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~f   79 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR-G----------FEVTGVDISPQMIEKRNVVFD-NFDAQD--------PPFPDGSF   79 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT-T----------SEEEEEESSHHHHHHTTSEEE-EEECHT--------HHCHSSSE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh-C----------CEEEEEECCHHHHhhhhhhhh-hhhhhh--------hhccccch
Confidence            467899999999999999998654 2          4999999997 2111222222 221112        11346799


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      |+|+|.....        +   +.....++..+.++|||||.+++.....
T Consensus        80 D~i~~~~~l~--------~---~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   80 DLIICNDVLE--------H---LPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             EEEEEESSGG--------G---SSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhHhhHHHHh--------h---cccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            9999966431        1   1135678999999999999999987654

...

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.18  E-value=1.2e-10  Score=102.96  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCC--CCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PID--GAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~--~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +++|.+|||+|||+|.++..+++..+          ++|+|+|+++ +.     ...  .+++. ..|..+         
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g----------~~V~giDlS~~~l~~A~~~~~~l~v~~~-~~D~~~---------  224 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYG----------VSVVGVTISAEQQKLAQERCAGLPVEIR-LQDYRD---------  224 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHHhccCeEEEE-ECchhh---------
Confidence            46889999999999999999988643          6999999997 21     111  24555 555433         


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       + +++||+|++.......+.         ......+..+.++|||||.+++..+
T Consensus       225 -l-~~~fD~Ivs~~~~ehvg~---------~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        225 -L-NGQFDRIVSVGMFEHVGP---------KNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             -c-CCCCCEEEEeCchhhCCh---------HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence             2 468999998654321111         1234678889999999999998654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.18  E-value=2.3e-11  Score=87.49  Aligned_cols=91  Identities=22%  Similarity=0.354  Sum_probs=61.7

Q ss_pred             eEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      |||+|||+|..+..+++...      ..+..+++|+|+++ |.         .-..++++ ++|+.+..        ..+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~------~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~-~~D~~~l~--------~~~   65 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFD------AGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFV-QADARDLP--------FSD   65 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHHTTTTSEEE-ESCTTCHH--------HHS
T ss_pred             CEEeecCCcHHHHHHHHHhh------hcccceEEEEECCHHHHHHHHHhchhcCCceEEE-ECCHhHCc--------ccC
Confidence            79999999999999998751      00447999999997 21         11378899 99998832        236


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA  178 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG  178 (229)
                      ++||+|++.+..       ..+ ...+....+++.+.++|+|||
T Consensus        66 ~~~D~v~~~~~~-------~~~-~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   66 GKFDLVVCSGLS-------LHH-LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSEEEEEE-TTG-------GGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCeeEEEEcCCc-------cCC-CCHHHHHHHHHHHHHHhCCCC
Confidence            799999995431       111 222345688999999999998

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.17  E-value=3.2e-10  Score=103.73  Aligned_cols=132  Identities=14%  Similarity=0.204  Sum_probs=88.6

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.+|||+|||+|.++..++...         +..+|+|+|+++ +.          .+ .++.++ ++|+.+        
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~---------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~-~~D~~~--------  200 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL---------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQII-HSNWFE--------  200 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeee-ecchhh--------
Confidence            4689999999999999998875         567999999996 21          11 246667 777543        


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCC--------cccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMR--------EMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~--------~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                       .+++++||+|+||++.-.....        ..+..       .-++....++..+.++|+|||.+++.+-. .....+.
T Consensus       201 -~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~  278 (506)
T PRK01544        201 -NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVT  278 (506)
T ss_pred             -hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHH
Confidence             1345689999998763211110        00110       12234557788899999999999987633 3345566


Q ss_pred             HHHHhh-CCeeEEEcCCCCC
Q psy1489         195 ESITRF-YSQVKILKPPSSR  213 (229)
Q Consensus       195 ~~l~~~-F~~v~~~kp~~sr  213 (229)
                      ..+... |..+.+.|.-+.+
T Consensus       279 ~~~~~~g~~~~~~~~D~~g~  298 (506)
T PRK01544        279 QIFLDHGYNIESVYKDLQGH  298 (506)
T ss_pred             HHHHhcCCCceEEEecCCCC
Confidence            666553 7778888876655

>PRK06922 hypothetical protein; Provisional

Probab=99.17  E-value=1.3e-10  Score=107.19  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=72.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------C--CCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------I--DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~--~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.+|||+|||+|.++..+++..         +.++|+|+|+++ |..       .  .++.++ ++|..+      +..
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I-~gDa~d------Lp~  481 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQNEGRSWNVI-KGDAIN------LSS  481 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEE-EcchHh------Ccc
Confidence            57899999999999998888875         678999999997 311       1  234556 677654      222


Q ss_pred             HhCCCCccEEEeCCCCCC--CCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNA--TGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~--~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+++++||+|+++.....  ..++..+.......+..+++.+.++|||||.+++..
T Consensus       482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            356788999998653210  000000000012345688999999999999999864

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.17  E-value=1.3e-10  Score=92.15  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=71.1

Q ss_pred             ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        58 ~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .+++|.+|||||||.|.+..+|.+.          .+...+|+|+++-.    ...++.++ ++|+.+.     + ..++
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~----------k~v~g~GvEid~~~v~~cv~rGv~Vi-q~Dld~g-----L-~~f~   72 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDE----------KQVDGYGVEIDPDNVAACVARGVSVI-QGDLDEG-----L-ADFP   72 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHh----------cCCeEEEEecCHHHHHHHHHcCCCEE-ECCHHHh-----H-hhCC
Confidence            4679999999999999999888875          34789999999721    12578888 9998762     2 3488


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +++||.|+.+-           ....+.....+|.++   |+-|...++..
T Consensus        73 d~sFD~VIlsq-----------tLQ~~~~P~~vL~Em---lRVgr~~IVsF  109 (193)
T PF07021_consen   73 DQSFDYVILSQ-----------TLQAVRRPDEVLEEM---LRVGRRAIVSF  109 (193)
T ss_pred             CCCccEEehHh-----------HHHhHhHHHHHHHHH---HHhcCeEEEEe
Confidence            99999999843           344455566777777   45566766644

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.16  E-value=2.1e-11  Score=87.28  Aligned_cols=88  Identities=23%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             EeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-C-------C--CCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-I-------D--GAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        66 LDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~-------~--~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ||+|||+|.++..+++..         +..+++|+|+|+ |.. .       .  ..... ..+..+      +......
T Consensus         1 LdiGcG~G~~~~~l~~~~---------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~   64 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL---------PDARYTGVDISPSMLERARERLAELGNDNFERL-RFDVLD------LFDYDPP   64 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTSTTCCCHHHCT---EEEE-E--SSS---------CCC-
T ss_pred             CEeCccChHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEE-EeecCC------hhhcccc
Confidence            799999999999999885         557999999998 321 1       1  11222 222222      1111122


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEE
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC  180 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~  180 (229)
                      ++||+|++....        .+.   .....+++.+.++|+|||.|
T Consensus        65 ~~fD~V~~~~vl--------~~l---~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   65 ESFDLVVASNVL--------HHL---EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---SEEEEE-TT--------S-----S-HHHHHHHHTTT-TSS-EE
T ss_pred             cccceehhhhhH--------hhh---hhHHHHHHHHHHHcCCCCCC
Confidence            589999996543        122   34557899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.16  E-value=1.7e-10  Score=93.73  Aligned_cols=92  Identities=22%  Similarity=0.281  Sum_probs=67.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      +.++++|||+|||+|..+..+++..+        +.++|+|+|+++ +.          ... +++++ .+|..+..   
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~--------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~-~~d~~~~~---  137 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIE--------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY-HGDGKRGL---  137 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-ECCcccCC---
Confidence            46789999999999999999998874        467999999996 21          122 36777 78876521   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                           ....+||+|+++....        +         ...++.+.|+|||.+++-+
T Consensus       138 -----~~~~~fD~Ii~~~~~~--------~---------~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 -----EKHAPFDAIIVTAAAS--------T---------IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             -----ccCCCccEEEEccCcc--------h---------hhHHHHHhcCcCcEEEEEE
Confidence                 1245899999976421        1         1235778899999998855

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.16  E-value=1.4e-10  Score=101.83  Aligned_cols=116  Identities=12%  Similarity=0.134  Sum_probs=81.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+..+||||||+|.++..+|++.         |...++|+|+++ +          ..+.++.++ ++|+..      +.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i-~~DA~~------ll  185 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLII-NYDARL------LL  185 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEE-ECCHHH------hh
Confidence            46799999999999999999986         678999999985 2          235678888 888654      33


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI  197 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l  197 (229)
                      ..++++.+|.|++..+..+..   ..| +. -.....+.++.++|+|||.+.+.+....-....++.+
T Consensus       186 ~~~~~~s~D~I~lnFPdPW~K---krH-RR-lv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~  248 (390)
T PRK14121        186 ELLPSNSVEKIFVHFPVPWDK---KPH-RR-VISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF  248 (390)
T ss_pred             hhCCCCceeEEEEeCCCCccc---cch-hh-ccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence            447788999999976421111   111 11 1235789999999999999998775433333333333

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=6.6e-10  Score=97.38  Aligned_cols=128  Identities=25%  Similarity=0.367  Sum_probs=87.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|++||+-|.++++.+.       +..+.|+++|+++  +.         .+.++..+ ..|....     
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~-------~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~-~~d~~~~-----  220 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELME-------NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVV-NKDARRL-----  220 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcC-------CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEE-ecccccc-----
Confidence            56899999999999999999999874       1235679999997  11         23455555 6664431     


Q ss_pred             HHHHhC-CCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCCChHH
Q psy1489         128 LVTILK-DDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGRNRPQ  192 (229)
Q Consensus       128 i~~~~~-~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~~~~~  192 (229)
                       ..... ..+||.|+.|+++..+|..-.           +......++.++|..+.++|||||.++-.+   ...++...
T Consensus       221 -~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~v  299 (355)
T COG0144         221 -AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEV  299 (355)
T ss_pred             -cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHH
Confidence             11122 236999999999877776422           222345567799999999999999998554   33344444


Q ss_pred             HHHHHHhh
Q psy1489         193 LEESITRF  200 (229)
Q Consensus       193 ~~~~l~~~  200 (229)
                      +...+++.
T Consensus       300 V~~~L~~~  307 (355)
T COG0144         300 VERFLERH  307 (355)
T ss_pred             HHHHHHhC
Confidence            55666664

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.13  E-value=5.2e-10  Score=90.11  Aligned_cols=122  Identities=18%  Similarity=0.261  Sum_probs=80.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..         +.++|+++|+++ +.          .+.+++++ .+|+.+.     
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~-~~d~~~~-----  102 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVI-EGSAPEC-----  102 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE-ECchHHH-----
Confidence            4578999999999999999988654         567999999997 21          23457777 7776431     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI  206 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~  206 (229)
                      +. .+ ...+|.++.+...        +       ...++..+.++|+|||.|++..........+.+.++.. ...+++
T Consensus       103 ~~-~~-~~~~d~v~~~~~~--------~-------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (196)
T PRK07402        103 LA-QL-APAPDRVCIEGGR--------P-------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEV  165 (196)
T ss_pred             Hh-hC-CCCCCEEEEECCc--------C-------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceE
Confidence            11 12 2346777775310        1       24678889999999999998776543334444555443 345555


Q ss_pred             EcCCCC
Q psy1489         207 LKPPSS  212 (229)
Q Consensus       207 ~kp~~s  212 (229)
                      +....+
T Consensus       166 ~~~~~~  171 (196)
T PRK07402        166 VQAAVN  171 (196)
T ss_pred             EEEEhh
Confidence            554433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.13  E-value=5.2e-10  Score=93.59  Aligned_cols=114  Identities=21%  Similarity=0.220  Sum_probs=72.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--CCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--IDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      ..++.+|||+|||+|..+..+++. +         ..+|+|+|+++ +..  ..++.   ..++.+.     +.-...+.
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~-g---------~~~v~giDis~~~l~~A~~n~~---~~~~~~~-----~~~~~~~~  178 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKL-G---------AKKVLAVDIDPQAVEAARENAE---LNGVELN-----VYLPQGDL  178 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHH---HcCCCce-----EEEccCCC
Confidence            357899999999999988876654 2         34799999997 211  01110   0111000     00000112


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v  204 (229)
                      +||+|+++...              +.....+..+.++|+|||.+++..+.......+...+... |..+
T Consensus       179 ~fD~Vvani~~--------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~  234 (250)
T PRK00517        179 KADVIVANILA--------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD  234 (250)
T ss_pred             CcCEEEEcCcH--------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE
Confidence            69999997531              1234567889999999999999766666667777777775 5433

>TIGR00478 tly hemolysin TlyA family protein

Probab=99.13  E-value=1.8e-10  Score=94.78  Aligned_cols=112  Identities=18%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-C----CCCCCeE
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-Y----PIDGAVV  113 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-~----~~~~~~~  113 (229)
                      .|++|+++||.++...+.+..++.+|||+|||||+|+..+++.          +..+|+|+|+++ | .    ..+.+..
T Consensus        54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~----------ga~~v~avD~~~~~l~~~l~~~~~v~~  123 (228)
T TIGR00478        54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK----------GAKEVYGVDVGYNQLAEKLRQDERVKV  123 (228)
T ss_pred             chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc----------CCCEEEEEeCCHHHHHHHHhcCCCeeE
Confidence            3899999999999999886667899999999999999999986          346999999998 2 2    1223322


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ....|+..... ..+.  .+-..+|++++..                   ..++..+...|+| |.+++-+
T Consensus       124 ~~~~ni~~~~~-~~~~--~d~~~~DvsfiS~-------------------~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       124 LERTNIRYVTP-ADIF--PDFATFDVSFISL-------------------ISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             eecCCcccCCH-hHcC--CCceeeeEEEeeh-------------------HhHHHHHHHHhCc-CeEEEEc
Confidence            22556653221 1111  0112456555522                   1245667788888 8776543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.12  E-value=2.3e-10  Score=97.53  Aligned_cols=108  Identities=19%  Similarity=0.315  Sum_probs=71.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..+|.+|||+|||+|.+++.+++. |         +.+|+|+|++|..           .+.. .+. .....+      
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~kl-G---------A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~-v~~~~~------  220 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKL-G---------AKKVVAIDIDPLAVEAARENAELNGVED-RIE-VSLSED------  220 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHT-T---------BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEE-ESCTSC------
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHc-C---------CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEE-EEEecc------
Confidence            457899999999999999997764 3         4699999999831           1222 121 111111      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS  202 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~  202 (229)
                          ....+||+|++|...              ..+...+..+.++|+|||.++++-.-......+.+.+.+-|.
T Consensus       221 ----~~~~~~dlvvANI~~--------------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~  277 (295)
T PF06325_consen  221 ----LVEGKFDLVVANILA--------------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFE  277 (295)
T ss_dssp             ----TCCS-EEEEEEES-H--------------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEE
T ss_pred             ----cccccCCEEEECCCH--------------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCE
Confidence                224789999997631              223345566788999999999987666667778877765343

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.12  E-value=2.1e-09  Score=84.75  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=82.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|+.++|+|||+|..+..++ +.+        |.++|+|+|.++-           ...++++++ .+|.-+      
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a-~~~--------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv-~g~Ap~------   95 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWA-LAG--------PSGRVIAIERDEEALELIERNAARFGVDNLEVV-EGDAPE------   95 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHH-HhC--------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEE-eccchH------
Confidence            5789999999999999999999 566        8899999998761           125678888 777544      


Q ss_pred             HHHHhCCC-CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         128 LVTILKDD-KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       128 i~~~~~~~-~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                         .+++. .+|.|+..+.-      .         ...+++.+...|||||++|+..-.-+.....++.+++.
T Consensus        96 ---~L~~~~~~daiFIGGg~------~---------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~  151 (187)
T COG2242          96 ---ALPDLPSPDAIFIGGGG------N---------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL  151 (187)
T ss_pred             ---hhcCCCCCCEEEECCCC------C---------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence               23333 69999996641      1         24678889999999999999876666666777777765

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.11  E-value=2.7e-10  Score=97.15  Aligned_cols=91  Identities=23%  Similarity=0.170  Sum_probs=64.4

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+|||+|||+|..+.++++. +          .+|+|+|+++ +.          .+ ++.+. ..|+....       
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~-g----------~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~-~~D~~~~~-------  180 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL-G----------FDVTAVDINQQSLENLQEIAEKENL-NIRTG-LYDINSAS-------  180 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC-C----------CEEEEEECCHHHHHHHHHHHHHcCC-ceEEE-Eechhccc-------
Confidence            459999999999999999875 2          5999999997 21          11 45555 66655421       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       + +++||+|++.+..         ++...+....++..+.++|+|||.+++.
T Consensus       181 -~-~~~fD~I~~~~vl---------~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        181 -I-QEEYDFILSTVVL---------MFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             -c-cCCccEEEEcchh---------hhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             2 5689999997643         1111123457889999999999996653

>PRK04457 spermidine synthase; Provisional

Probab=99.11  E-value=1.2e-09  Score=92.05  Aligned_cols=124  Identities=15%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C----CCCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P----IDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~----~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||||||.|.++..+++..         |..+|++||+++ +.       .    .++++++ .+|..+.     
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~---------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~-~~Da~~~-----  129 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL---------PDTRQTAVEINPQVIAVARNHFELPENGERFEVI-EADGAEY-----  129 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEE-ECCHHHH-----
Confidence            456899999999999999998876         678999999987 21       1    2457777 7775541     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-ChHHHHHHHHhhCCe-eE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-NRPQLEESITRFYSQ-VK  205 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~~~~~~~~l~~~F~~-v~  205 (229)
                      +. .. .++||+|++|.... .+..  .+.    .....+..+.+.|+|||.+++..+... ....+++.++..|.. +.
T Consensus       130 l~-~~-~~~yD~I~~D~~~~-~~~~--~~l----~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~  200 (262)
T PRK04457        130 IA-VH-RHSTDVILVDGFDG-EGII--DAL----CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVL  200 (262)
T ss_pred             HH-hC-CCCCCEEEEeCCCC-CCCc--ccc----CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEE
Confidence            21 12 35799999986321 1111  111    124678889999999999998766543 356778888888975 44


Q ss_pred             EE
Q psy1489         206 IL  207 (229)
Q Consensus       206 ~~  207 (229)
                      ++
T Consensus       201 ~~  202 (262)
T PRK04457        201 EL  202 (262)
T ss_pred             EE
Confidence            44

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.10  E-value=5.4e-10  Score=96.15  Aligned_cols=105  Identities=15%  Similarity=0.206  Sum_probs=73.2

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+|||+|||+|.++..++...         +..+|+|+|+++ +.          .+ .++.++ .+|+.+         
T Consensus       135 ~~VLDlG~GsG~iai~la~~~---------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~-~~D~~~---------  195 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAF---------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLI-ESDLFA---------  195 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE-ECchhh---------
Confidence            689999999999999999875         567999999997 11          12 247778 888654         


Q ss_pred             HhCCCCccEEEeCCCCCCCCC-CcccH------H-------HHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGM-REMDH------D-------LITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~-~~~d~------~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .+++.+||+|++|++.-.... .....      .       .-+.....++..+.++|+|||.+++.+..
T Consensus       196 ~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        196 ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            134567999999875321110 00000      0       11345567889999999999999997654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=7.8e-10  Score=93.72  Aligned_cols=120  Identities=21%  Similarity=0.312  Sum_probs=76.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++|.+|||+|||+|.+++.+++.          +...|+|+|+.|..        ...++....+.-..+      ...
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kL----------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~------~~~  223 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKL----------GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL------LLE  223 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHc----------CCceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc------chh
Confidence            358899999999999999997765          35789999999831        112222000000011      111


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh-hCCeeEEEc
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR-FYSQVKILK  208 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~-~F~~v~~~k  208 (229)
                      ....++||+|++|.-              .+........+.+.|||||+++++-.-....+.+.+.+.+ -|.-+.+..
T Consensus       224 ~~~~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         224 VPENGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             hcccCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence            123469999999652              1223456677899999999999875444445667766633 466555543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.09  E-value=2.6e-10  Score=90.64  Aligned_cols=117  Identities=14%  Similarity=0.167  Sum_probs=81.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---------CCCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---------IYPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---------~~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      -.++||+|||.|.++..|+.+.           .+++++|+++         +...+++.++ +.|+.+         ..
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC-----------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~-~~dvp~---------~~  102 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC-----------DRLLAVDISPRALARARERLAGLPHVEWI-QADVPE---------FW  102 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE-----------EEEEEEES-HHHHHHHHHHTTT-SSEEEE-ES-TTT-----------
T ss_pred             cceeEecCCCccHHHHHHHHhh-----------CceEEEeCCHHHHHHHHHhcCCCCCeEEE-ECcCCC---------CC
Confidence            4689999999999999999885           3899999996         2345789999 999866         25


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHcccCCCEEEEeecC---------CCChHHHHHHHHhhCC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDL-ITQLAIAVIRFAVTYSKPGADCLIKIWD---------GRNRPQLEESITRFYS  202 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~-~~~~~~~~l~~~~~~LkpgG~~v~~~~~---------~~~~~~~~~~l~~~F~  202 (229)
                      +++.||+|+.....         .+. ..+....++..+...|+|||.+|+-.+.         ....+.+.++++..|.
T Consensus       103 P~~~FDLIV~SEVl---------YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~  173 (201)
T PF05401_consen  103 PEGRFDLIVLSEVL---------YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT  173 (201)
T ss_dssp             -SS-EEEEEEES-G---------GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred             CCCCeeEEEEehHh---------HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence            68899999985422         111 1234557788899999999999987754         2246788899999998


Q ss_pred             eeEEEc
Q psy1489         203 QVKILK  208 (229)
Q Consensus       203 ~v~~~k  208 (229)
                      +|....
T Consensus       174 ~~~~~~  179 (201)
T PF05401_consen  174 EVERVE  179 (201)
T ss_dssp             EEEEEE
T ss_pred             heeEEE
Confidence            887764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03438 probable methyltransferase

Probab=99.09  E-value=2.5e-09  Score=91.82  Aligned_cols=126  Identities=16%  Similarity=0.160  Sum_probs=75.7

Q ss_pred             CccchhhhhhHhhhhh--cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C----
Q psy1489          40 NYRCRSAFKLLEIDSK--IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P----  107 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~--~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~----  107 (229)
                      -|..|.-..+++-...  ...+.++.+|||||||+|.++..+++...        ...+|+|+|+|+ |.     .    
T Consensus        40 Yy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~--------~~~~~~~iDiS~~mL~~a~~~l~~~  111 (301)
T TIGR03438        40 YYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALR--------QPARYVPIDISADALKESAAALAAD  111 (301)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhc--------cCCeEEEEECCHHHHHHHHHHHHhh
Confidence            3566665555432111  12245678999999999999999998762        136899999997 31     1    


Q ss_pred             CCC--CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         108 IDG--AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       108 ~~~--~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .++  +.++ ++|+.+...   +..........+++++.+.     ...+.    +.....|+.+.++|+|||.|++-+.
T Consensus       112 ~p~~~v~~i-~gD~~~~~~---~~~~~~~~~~~~~~~gs~~-----~~~~~----~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       112 YPQLEVHGI-CADFTQPLA---LPPEPAAGRRLGFFPGSTI-----GNFTP----EEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             CCCceEEEE-EEcccchhh---hhcccccCCeEEEEecccc-----cCCCH----HHHHHHHHHHHHhcCCCCEEEEecc
Confidence            233  4557 888876310   1110111122334443221     11221    2345788999999999999998664


Q ss_pred             C
Q psy1489         186 D  186 (229)
Q Consensus       186 ~  186 (229)
                      .
T Consensus       179 ~  179 (301)
T TIGR03438       179 L  179 (301)
T ss_pred             C
Confidence            3

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1270|consensus

Probab=99.06  E-value=5.4e-10  Score=92.01  Aligned_cols=90  Identities=22%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-C-----CeEEecCCCCChhH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-G-----AVVLSKCDFTQPDI  124 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~-----~~~~~~~D~~~~~~  124 (229)
                      |++|||+|||.|-+++.||+. |          ..|+|||+++ |          .|.. .     +.+. ..|...   
T Consensus        90 g~~ilDvGCGgGLLSepLArl-g----------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~-~~~~E~---  154 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL-G----------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE-DTDVEG---  154 (282)
T ss_pred             CceEEEeccCccccchhhHhh-C----------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehh-hcchhh---
Confidence            488999999999999999976 3          6999999996 2          1111 1     1222 222221   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                             + .+.||.|+|.           +...+...+...+..+.++|||||.+++...
T Consensus       155 -------~-~~~fDaVvcs-----------evleHV~dp~~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  155 -------L-TGKFDAVVCS-----------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             -------c-ccccceeeeH-----------HHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence                   2 2459999993           3455556677889999999999999988653

>PHA03411 putative methyltransferase; Provisional

Probab=99.06  E-value=1.9e-09  Score=90.48  Aligned_cols=120  Identities=16%  Similarity=0.093  Sum_probs=80.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+.+|||+|||+|.++..++.+.         +..+|+|+|+++ |.     ..+++.++ .+|+.+.         ..+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~---------~~~~V~gVDisp~al~~Ar~n~~~v~~v-~~D~~e~---------~~~  124 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRC---------KPEKIVCVELNPEFARIGKRLLPEAEWI-TSDVFEF---------ESN  124 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHhCcCCEEE-ECchhhh---------ccc
Confidence            45799999999999999888764         346999999997 21     24568888 8887652         224


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHH-------H--HHHHHHHHHHHcccCCCEEEEeecCCC-------ChHHHHHHHH
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLIT-------Q--LAIAVIRFAVTYSKPGADCLIKIWDGR-------NRPQLEESIT  198 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~-------~--~~~~~l~~~~~~LkpgG~~v~~~~~~~-------~~~~~~~~l~  198 (229)
                      ..||+|++|++.......+.......       +  .....+.....+|+|+|.+.+. +.+.       ...++...++
T Consensus       125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y~~sl~~~~y~~~l~  203 (279)
T PHA03411        125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYYDGTMKSNKYLKWSK  203 (279)
T ss_pred             CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-EeccccccccCCHHHHHHHHH
Confidence            68999999987643222222111111       0  1356777788899999987764 3321       3566777776


Q ss_pred             hh
Q psy1489         199 RF  200 (229)
Q Consensus       199 ~~  200 (229)
                      +.
T Consensus       204 ~~  205 (279)
T PHA03411        204 QT  205 (279)
T ss_pred             hc
Confidence            64

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=3.1e-09  Score=90.28  Aligned_cols=125  Identities=20%  Similarity=0.232  Sum_probs=82.7

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +|||||||+|..+..++...         +...|+|+|+|+-           ..+.++.++ ++|+.+.         +
T Consensus       113 ~ilDlGTGSG~iai~la~~~---------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~-~~dlf~~---------~  173 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG---------PDAEVIAVDISPDALALARENAERNGLVRVLVV-QSDLFEP---------L  173 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC---------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEE-eeecccc---------c
Confidence            79999999999999999886         6789999999971           012234455 5565552         3


Q ss_pred             CCCCccEEEeCCCCCCCC-CCc------ccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         133 KDDKLDVVLSDMAPNATG-MRE------MDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g-~~~------~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                       .++||+|+||++--... ...      .+..       .-++....++..+.++|+|||.+++.+-... ...+.+.+.
T Consensus       174 -~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-~~~v~~~~~  251 (280)
T COG2890         174 -RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-GEAVKALFE  251 (280)
T ss_pred             -CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-HHHHHHHHH
Confidence             23899999998732111 000      0111       1244666889999999999999998774333 355556555


Q ss_pred             hh--CCeeEEEcC
Q psy1489         199 RF--YSQVKILKP  209 (229)
Q Consensus       199 ~~--F~~v~~~kp  209 (229)
                      ..  |..+...|.
T Consensus       252 ~~~~~~~v~~~~d  264 (280)
T COG2890         252 DTGFFEIVETLKD  264 (280)
T ss_pred             hcCCceEEEEEec
Confidence            43  455666654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.04  E-value=5.6e-10  Score=90.95  Aligned_cols=101  Identities=21%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|||+|||+|.++..+++..+        ..++++++|+++ +.        ...++.+. .+|+.+..       
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~--------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~-------  101 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAP--------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFI-QADAEALP-------  101 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcC--------CCceEEEEECCHHHHHHHHHHhccCCCceEE-ecchhcCC-------
Confidence            3688999999999999999998763        226899999986 21        11346777 77776521       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                       ++++.||+|++....     +..      .....+++.+.++|+|||.+++..+...
T Consensus       102 -~~~~~~D~i~~~~~~-----~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~  147 (223)
T TIGR01934       102 -FEDNSFDAVTIAFGL-----RNV------TDIQKALREMYRVLKPGGRLVILEFSKP  147 (223)
T ss_pred             -CCCCcEEEEEEeeee-----CCc------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence             345689999986532     111      1234678899999999999987665443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.04  E-value=7.4e-10  Score=90.80  Aligned_cols=93  Identities=15%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++|||+|||+|.++..+++..         +..+|+|+|+++ +.          .+ ..+.++ ..|+.+..       
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~-~~d~~~~~-------   63 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH---------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIF-YRDSAKDP-------   63 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEE-ecccccCC-------
Confidence            379999999999999999876         457999999986 21          01 235677 77775421       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       + .+.||+|++....           .........+..+.++|+|||.+++..+
T Consensus        64 -~-~~~fD~I~~~~~l-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       64 -F-PDTYDLVFGFEVI-----------HHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             -C-CCCCCEeehHHHH-----------HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence             2 3579999985432           1112234788899999999999987653

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.04  E-value=1.9e-09  Score=88.78  Aligned_cols=100  Identities=23%  Similarity=0.270  Sum_probs=71.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C------CCCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P------IDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~------~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..++...+        +..+++++|+++ +.     .      ...+.+. .+|+.+..    
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~--------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~----  116 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVG--------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV-QGDAEALP----  116 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEE-ecccccCC----
Confidence            3678999999999999999988763        257999999986 20     1      1346677 77776631    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                          ++.+.||+|+++...     +...      .....+..+.++|+|||.+++..+..
T Consensus       117 ----~~~~~~D~I~~~~~l-----~~~~------~~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216        117 ----FPDNSFDAVTIAFGL-----RNVP------DIDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             ----CCCCCccEEEEeccc-----ccCC------CHHHHHHHHHHhccCCcEEEEEEecC
Confidence                345689999986532     1111      13467888999999999998765543

>PRK00811 spermidine synthase; Provisional

Probab=99.03  E-value=2.4e-09  Score=91.22  Aligned_cols=141  Identities=10%  Similarity=0.046  Sum_probs=91.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------------CCCCCeEEecCCCCChh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------PIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------~~~~~~~~~~~D~~~~~  123 (229)
                      +...+||+||||.|..+..++++.         +..+|++||+++ +.               .-++++++ .+|...  
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~---------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~-~~Da~~--  142 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHP---------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV-IGDGIK--  142 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCC---------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE-ECchHH--
Confidence            346799999999999999988753         346899999997 21               12356666 676544  


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----CChHHHHHHHHh
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----RNRPQLEESITR  199 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----~~~~~~~~~l~~  199 (229)
                         .+..  .+++||+|++|..... +.  ..+.    .....++.+.+.|+|||.+++.....    .....+...++.
T Consensus       143 ---~l~~--~~~~yDvIi~D~~dp~-~~--~~~l----~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~  210 (283)
T PRK00811        143 ---FVAE--TENSFDVIIVDSTDPV-GP--AEGL----FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKE  210 (283)
T ss_pred             ---HHhh--CCCcccEEEECCCCCC-Cc--hhhh----hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHH
Confidence               1221  3568999999975321 11  1111    12467788999999999998753221    124556677888


Q ss_pred             hCCeeEEEcC-CCCCCCCceEEEEec
Q psy1489         200 FYSQVKILKP-PSSRSHSAELFLLGR  224 (229)
Q Consensus       200 ~F~~v~~~kp-~~sr~~s~E~Y~v~~  224 (229)
                      .|..|..+.. ..+-+...-.|++|-
T Consensus       211 ~F~~v~~~~~~vp~~~~~~w~f~~as  236 (283)
T PRK00811        211 VFPIVRPYQAAIPTYPSGLWSFTFAS  236 (283)
T ss_pred             HCCCEEEEEeECCcccCchheeEEee
Confidence            8988887763 233333334556654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.02  E-value=3.2e-09  Score=94.27  Aligned_cols=123  Identities=20%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC--CCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID--GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~--~~~~~~~~D~~~~~~~~  126 (229)
                      .+|.+|||+|||+|+++..++..          +..+|++||+++ +          ..+.  +++++ ++|+.+.    
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~----------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i-~~D~~~~----  283 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG----------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV-RDDVFKL----  283 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE-EccHHHH----
Confidence            46889999999999998876542          345999999996 1          1232  46778 8887552    


Q ss_pred             HHHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhh
Q psy1489         127 RLVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRF  200 (229)
Q Consensus       127 ~i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~  200 (229)
                       +.... .+++||+|++|++.....-.  ...........++..+.++|+|||.+++...++ -..+++.+.+...
T Consensus       284 -l~~~~~~~~~fDlVilDPP~f~~~k~--~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a  356 (396)
T PRK15128        284 -LRTYRDRGEKFDVIVMDPPKFVENKS--QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA  356 (396)
T ss_pred             -HHHHHhcCCCCCEEEECCCCCCCChH--HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence             22211 24689999999875222110  111112234466778999999999998754332 2445566655443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.02  E-value=6.5e-10  Score=101.13  Aligned_cols=98  Identities=21%  Similarity=0.291  Sum_probs=71.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|||+|||+|.++..+++..           .+|+|+|+++ |.        ..+++.++ .+|+.+..      .
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-----------~~v~giD~s~~~l~~a~~~~~~~~~i~~~-~~d~~~~~------~   97 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-----------GQVIALDFIESVIKKNESINGHYKNVKFM-CADVTSPD------L   97 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-----------CEEEEEeCCHHHHHHHHHHhccCCceEEE-Eecccccc------c
Confidence            356799999999999999999863           4899999997 21        12457777 88876421      1


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+++++||+|+++.+..         .........++.++.++|+|||.+++..
T Consensus        98 ~~~~~~fD~I~~~~~l~---------~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336         98 NISDGSVDLIFSNWLLM---------YLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCCCCCEEEEehhhhHH---------hCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            14567899999976431         1111224578899999999999998864

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=2.3e-09  Score=88.25  Aligned_cols=136  Identities=15%  Similarity=0.282  Sum_probs=97.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCC-CeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDG-AVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~-~~~~~~~D~~~~~~~~  126 (229)
                      +.+|++|+|.|.|+|.++.+|+..++        +.|+|+.+|+.+ ..          .+.+ +++. .+|+.+.    
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg--------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~-~~Dv~~~----  158 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVG--------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK-LGDVREG----  158 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhC--------CCceEEEEEecHHHHHHHHHHHHHhccccceEEE-ecccccc----
Confidence            56899999999999999999999887        889999999986 10          1222 6666 7777763    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVK  205 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~  205 (229)
                           ..+..||.|+.|++-         +       ..++..+.+.|+|||.+++....-.+.....+.|+.. |-+++
T Consensus       159 -----~~~~~vDav~LDmp~---------P-------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie  217 (256)
T COG2519         159 -----IDEEDVDAVFLDLPD---------P-------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE  217 (256)
T ss_pred             -----ccccccCEEEEcCCC---------h-------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence                 334589999999952         2       2567778999999999988665555556666666655 43222


Q ss_pred             E---------EcCCCCCCC----CceEEEEeccCCC
Q psy1489         206 I---------LKPPSSRSH----SAELFLLGRGFKG  228 (229)
Q Consensus       206 ~---------~kp~~sr~~----s~E~Y~v~~~~~~  228 (229)
                      .         +++...|+.    -+-.|+|...+.+
T Consensus       218 ~~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~~~  253 (256)
T COG2519         218 AVETLVRRWEVRKEATRPETRMVGHTGYIVFARKLG  253 (256)
T ss_pred             hheeeeheeeecccccCcccccccceeEEEEEeecc
Confidence            2         335566664    5667888776653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.00  E-value=1.1e-08  Score=97.21  Aligned_cols=108  Identities=18%  Similarity=0.102  Sum_probs=73.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC--CCCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI--DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~--~~~~~~~~~D~~~~~~~~  126 (229)
                      .+|.+|||||||+|+++..++..          +..+|++||+++ +          ..+  .+++++ ++|+.+.    
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~----------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i-~~D~~~~----  601 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG----------GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLI-QADCLAW----  601 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEE-EccHHHH----
Confidence            35889999999999999998874          345899999996 1          122  246778 8886541    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       +.. + +++||+|++|++.....-...+..........++..+.++|+|||.+++..-
T Consensus       602 -l~~-~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        602 -LKE-A-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             -HHH-c-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence             211 2 4689999999874332211112223334455678889999999999987653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.00  E-value=1.2e-09  Score=89.30  Aligned_cols=98  Identities=16%  Similarity=0.067  Sum_probs=67.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C------CC---------------CCCeEEec
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y------PI---------------DGAVVLSK  116 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~------~~---------------~~~~~~~~  116 (229)
                      .++.+|||+|||.|..+..||++ |          ..|+|+|+|+.  .      .+               .++++. +
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~-G----------~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~  100 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ-G----------HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIF-C  100 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC-C----------CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEE-E
Confidence            56789999999999999999975 3          58999999972  1      11               146667 8


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      +|+.+...       ...+.||.|+......        + ...+.....+..+.++|+|||++++..+
T Consensus       101 ~D~~~~~~-------~~~~~fD~i~D~~~~~--------~-l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       101 GDFFALTA-------ADLGPVDAVYDRAALI--------A-LPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ccCCCCCc-------ccCCCcCEEEechhhc--------c-CCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            88877321       0124689998754321        0 1113345678889999999998766554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.99  E-value=4.9e-10  Score=89.61  Aligned_cols=123  Identities=21%  Similarity=0.235  Sum_probs=76.5

Q ss_pred             hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC------CC--CCeEEecCCCCChhH
Q psy1489          55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP------ID--GAVVLSKCDFTQPDI  124 (229)
Q Consensus        55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~------~~--~~~~~~~~D~~~~~~  124 (229)
                      ....++ +.++||||||.|..+.+||++ |          ..|+|+|.++.  ..      ..  .++.. ..|+.+.. 
T Consensus        25 a~~~~~-~g~~LDlgcG~GRNalyLA~~-G----------~~VtAvD~s~~al~~l~~~a~~~~l~i~~~-~~Dl~~~~-   90 (192)
T PF03848_consen   25 AVPLLK-PGKALDLGCGEGRNALYLASQ-G----------FDVTAVDISPVALEKLQRLAEEEGLDIRTR-VADLNDFD-   90 (192)
T ss_dssp             HCTTS--SSEEEEES-TTSHHHHHHHHT-T-----------EEEEEESSHHHHHHHHHHHHHTT-TEEEE-E-BGCCBS-
T ss_pred             HHhhcC-CCcEEEcCCCCcHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHhhcCceeEEE-Eecchhcc-
Confidence            344454 569999999999999999986 3          58999999972  11      11  25566 77877632 


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-CCC-----hHHHH---H
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-GRN-----RPQLE---E  195 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-~~~-----~~~~~---~  195 (229)
                             + ++.||+|+|....         .+...+....++..+...++|||.+++..+. ..+     ..++.   .
T Consensus        91 -------~-~~~yD~I~st~v~---------~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~  153 (192)
T PF03848_consen   91 -------F-PEEYDFIVSTVVF---------MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPG  153 (192)
T ss_dssp             ---------TTTEEEEEEESSG---------GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TT
T ss_pred             -------c-cCCcCEEEEEEEe---------ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHH
Confidence                   3 3579999986432         1122233456788899999999998875542 111     11111   4


Q ss_pred             HHHhhCCeeEEEc
Q psy1489         196 SITRFYSQVKILK  208 (229)
Q Consensus       196 ~l~~~F~~v~~~k  208 (229)
                      +|..+|..+++.+
T Consensus       154 EL~~~y~dW~il~  166 (192)
T PF03848_consen  154 ELREYYADWEILK  166 (192)
T ss_dssp             HHHHHTTTSEEEE
T ss_pred             HHHHHhCCCeEEE
Confidence            5667777777654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG4300|consensus

Probab=98.99  E-value=6.2e-10  Score=88.65  Aligned_cols=110  Identities=13%  Similarity=0.079  Sum_probs=69.8

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------CCCCe-EEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------IDGAV-VLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~~~~~-~~~~~D~~~~~~~~~i~~  130 (229)
                      ..||++|||||..-.+.-.          .|...|+++|.++ |..          .+.+. ++ .++..+.      .+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~----------~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fv-va~ge~l------~~  140 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW----------KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFV-VADGENL------PQ  140 (252)
T ss_pred             cceEEecccCCCCcccccC----------CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEE-eechhcC------cc
Confidence            3579999999987555332          2667999999997 421          22444 55 5665552      21


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY  201 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F  201 (229)
                       +++.++|.|++....     -+.      +.+.++|.+..++|||||++++-..-.....-+...+++++
T Consensus       141 -l~d~s~DtVV~TlvL-----CSv------e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~  199 (252)
T KOG4300|consen  141 -LADGSYDTVVCTLVL-----CSV------EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVA  199 (252)
T ss_pred             -cccCCeeeEEEEEEE-----ecc------CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHh
Confidence             468899999986532     111      23467899999999999998863322222333334444443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.97  E-value=4.9e-09  Score=88.56  Aligned_cols=133  Identities=19%  Similarity=0.247  Sum_probs=82.8

Q ss_pred             hhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCC-Ce
Q psy1489          45 SAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDG-AV  112 (229)
Q Consensus        45 ~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~-~~  112 (229)
                      +.+|...+.....-+ .|.+|||+|||.|.++..++.+          ++..|+|+|.++..           .... +.
T Consensus       100 Sd~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~----------GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~  168 (315)
T PF08003_consen  100 SDWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGR----------GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVF  168 (315)
T ss_pred             ccchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhc----------CCCEEEEECCChHHHHHHHHHHHHhCCCccEE
Confidence            334444443333212 5899999999999999998876          34689999998621           0111 11


Q ss_pred             EEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--C---
Q psy1489         113 VLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--G---  187 (229)
Q Consensus       113 ~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~---  187 (229)
                      .+ ...+.+      +..   .+.||+|+|-+-.   + |-       ......|.+....|+|||.+|+.+.-  +   
T Consensus       169 ~l-plgvE~------Lp~---~~~FDtVF~MGVL---Y-Hr-------r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~  227 (315)
T PF08003_consen  169 EL-PLGVED------LPN---LGAFDTVFSMGVL---Y-HR-------RSPLDHLKQLKDSLRPGGELVLETLVIDGDEN  227 (315)
T ss_pred             Ec-Ccchhh------ccc---cCCcCEEEEeeeh---h-cc-------CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence            11 111111      211   4689999994432   1 11       22346777888999999999987531  1   


Q ss_pred             ------------------CChHHHHHHHHhh-CCeeEEEcC
Q psy1489         188 ------------------RNRPQLEESITRF-YSQVKILKP  209 (229)
Q Consensus       188 ------------------~~~~~~~~~l~~~-F~~v~~~kp  209 (229)
                                        +....+...++++ |.+|+++--
T Consensus       228 ~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  228 TVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV  268 (315)
T ss_pred             eEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence                              1256677777776 998888753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.97  E-value=1.9e-09  Score=91.72  Aligned_cols=133  Identities=23%  Similarity=0.340  Sum_probs=89.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..+|..|||+|+|||+.+.++++.+.        ..+.|+++|+++  +         ....++... ..|.+.      
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~--------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~-~~D~~~------  147 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMG--------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVI-NADARK------  147 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTT--------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEE-ESHHHH------
T ss_pred             ccccccccccccCCCCceeeeeeccc--------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEE-eecccc------
Confidence            46789999999999999999999986        578999999996  1         123445555 444333      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCccc-----------HHHHHHHHHHHHHHHHHcc----cCCCEEEEee---cCCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMD-----------HDLITQLAIAVIRFAVTYS----KPGADCLIKI---WDGRN  189 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----------~~~~~~~~~~~l~~~~~~L----kpgG~~v~~~---~~~~~  189 (229)
                      +........||.|+.|++....|....+           ......++.++|+.+.+.+    +|||++|-.+   ...++
T Consensus       148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN  227 (283)
T PF01189_consen  148 LDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN  227 (283)
T ss_dssp             HHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred             ccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence            2112334579999999987665542221           2233446678999999999    9999998654   33344


Q ss_pred             hHHHHHHHHhhCCeeEEE
Q psy1489         190 RPQLEESITRFYSQVKIL  207 (229)
Q Consensus       190 ~~~~~~~l~~~F~~v~~~  207 (229)
                      ...+...+++ +..++..
T Consensus       228 E~vV~~fl~~-~~~~~l~  244 (283)
T PF01189_consen  228 EEVVEKFLKR-HPDFELV  244 (283)
T ss_dssp             HHHHHHHHHH-STSEEEE
T ss_pred             HHHHHHHHHh-CCCcEEE
Confidence            4444455555 4444444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.97  E-value=3.6e-09  Score=86.21  Aligned_cols=90  Identities=23%  Similarity=0.263  Sum_probs=64.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..+++..           ++|+++|+++ +.          .+.++.+. .+|..+.     
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-----------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~-----  138 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-----------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVR-HGDGWKG-----  138 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-----------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEE-ECCcccC-----
Confidence            4678999999999999998877764           4899999986 21          23457777 8886542     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         ....++||+|+++.+..                 .....+.+.|+|||.+++.+.
T Consensus       139 ---~~~~~~fD~I~~~~~~~-----------------~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        139 ---WPAYAPFDRILVTAAAP-----------------EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             ---CCcCCCcCEEEEccCch-----------------hhhHHHHHhcCCCcEEEEEEc
Confidence               11236899999976431                 112346788999999998765

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.97  E-value=1.4e-09  Score=91.61  Aligned_cols=101  Identities=11%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CCCeeEeecCCCCc----hHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC----------------------
Q psy1489          61 PGLKVLDCGAAPGS----WSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI----------------------  108 (229)
Q Consensus        61 ~g~~VLDlGcGpG~----~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~----------------------  108 (229)
                      ++.+|+|+|||+|.    ++..+++..+.    ......+|+|+|+++ |.     .+                      
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~----~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~  174 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPK----AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVE  174 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhh----cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCC
Confidence            45799999999996    45556655420    001246899999997 21     11                      


Q ss_pred             ----------CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489         109 ----------DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA  178 (229)
Q Consensus       109 ----------~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG  178 (229)
                                ..+.+. +.|+.+..        .+.++||+|+|....         ++........++..+.+.|+|||
T Consensus       175 ~~~~v~~~ir~~V~F~-~~dl~~~~--------~~~~~fD~I~crnvl---------~yf~~~~~~~~l~~l~~~L~pGG  236 (264)
T smart00138      175 DKYRVKPELKERVRFA-KHNLLAES--------PPLGDFDLIFCRNVL---------IYFDEPTQRKLLNRFAEALKPGG  236 (264)
T ss_pred             CeEEEChHHhCcCEEe-eccCCCCC--------CccCCCCEEEechhH---------HhCCHHHHHHHHHHHHHHhCCCe
Confidence                      135666 77777632        236789999994422         11111345678999999999999


Q ss_pred             EEEEe
Q psy1489         179 DCLIK  183 (229)
Q Consensus       179 ~~v~~  183 (229)
                      .+++-
T Consensus       237 ~L~lg  241 (264)
T smart00138      237 YLFLG  241 (264)
T ss_pred             EEEEE
Confidence            99874

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.96  E-value=2.8e-09  Score=90.51  Aligned_cols=128  Identities=17%  Similarity=0.150  Sum_probs=83.0

Q ss_pred             CCCeeEeecCCCCchHHH-HHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CC-CCCeEEecCCCCChhHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQV-AVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~-la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +..+|+|+|||||.++.. ++....        ++++++|+|+++ +.           .+ +++.|. .+|+.+..   
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~--------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~-~~Da~~~~---  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHL--------PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH-TADVMDVT---  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEE-ECchhhcc---
Confidence            568999999999987544 444444        778999999997 11           11 358888 88877621   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH-----HHHhhC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE-----SITRFY  201 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~-----~l~~~F  201 (229)
                           -..+.||+|++++..      .++.    .....+++.+.+.|+|||.+++....+.  ..+++     ..-+-|
T Consensus       191 -----~~l~~FDlVF~~ALi------~~dk----~~k~~vL~~l~~~LkPGG~Lvlr~~~G~--r~~LYp~v~~~~~~gf  253 (296)
T PLN03075        191 -----ESLKEYDVVFLAALV------GMDK----EEKVKVIEHLGKHMAPGALLMLRSAHGA--RAFLYPVVDPCDLRGF  253 (296)
T ss_pred             -----cccCCcCEEEEeccc------cccc----ccHHHHHHHHHHhcCCCcEEEEecccch--HhhcCCCCChhhCCCe
Confidence                 113679999997421      1111    1235788899999999999998763322  22221     111248


Q ss_pred             CeeEEEcCCCCCCCCce
Q psy1489         202 SQVKILKPPSSRSHSAE  218 (229)
Q Consensus       202 ~~v~~~kp~~sr~~s~E  218 (229)
                      +...++.|.. ...|+=
T Consensus       254 ~~~~~~~P~~-~v~Nsv  269 (296)
T PLN03075        254 EVLSVFHPTD-EVINSV  269 (296)
T ss_pred             EEEEEECCCC-CceeeE
Confidence            8888888843 344443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.96  E-value=3.4e-09  Score=91.57  Aligned_cols=92  Identities=26%  Similarity=0.328  Sum_probs=65.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++++|||+|||+|.++..+++..+        ..++|+++|+++ +          ....++.++ .+|..+.     
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~--------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i-~gD~~~~-----  143 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVG--------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFV-CGDGYYG-----  143 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-eCChhhc-----
Confidence            45789999999999999999998764        346899999997 2          123457777 7875541     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +   .....||+|+++...     .            .....+.+.|+|||.+++.+
T Consensus       144 ~---~~~~~fD~Ii~~~g~-----~------------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        144 V---PEFAPYDVIFVTVGV-----D------------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             c---cccCCccEEEECCch-----H------------HhHHHHHHhcCCCCEEEEEe
Confidence            1   123579999996532     1            11223567899999998754

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.95  E-value=1.7e-09  Score=93.08  Aligned_cols=98  Identities=19%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..++++.         |..+++++|+.++.          .+ .+++++ .+|+.+..    
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~---------p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~-~~d~~~~~----  212 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNLPGAIDLVNENAAEKGVADRMRGI-AVDIYKES----  212 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHC---------CCCEEEEEecHHHHHHHHHHHHhCCccceEEEE-ecCccCCC----
Confidence            4677899999999999999999886         67899999974321          11 246788 88876521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          ++  .+|+|+.....     +.++.    +.+..+++.+.+.|+|||++++..+
T Consensus       213 ----~~--~~D~v~~~~~l-----h~~~~----~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       213 ----YP--EADAVLFCRIL-----YSANE----QLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             ----CC--CCCEEEeEhhh-----hcCCh----HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                22  36988764321     11211    3456789999999999999987643

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PHA03412 putative methyltransferase; Provisional

Probab=98.94  E-value=3.4e-09  Score=87.05  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=67.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+.+|||+|||+|.++..+++++..      .+...|+|+|+++ +     ...+++.++ .+|+.+..        + +
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~------~~~~~V~aVEID~~Al~~Ar~n~~~~~~~-~~D~~~~~--------~-~  112 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMY------AKPREIVCVELNHTYYKLGKRIVPEATWI-NADALTTE--------F-D  112 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhccc------CCCcEEEEEECCHHHHHHHHhhccCCEEE-Ecchhccc--------c-c
Confidence            3679999999999999998886421      0245899999997 2     134567888 88876521        2 4


Q ss_pred             CCccEEEeCCCCCCCCCCcc-cHHHHHHHHHHHHHHHHHcccCCCE
Q psy1489         135 DKLDVVLSDMAPNATGMREM-DHDLITQLAIAVIRFAVTYSKPGAD  179 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~-d~~~~~~~~~~~l~~~~~~LkpgG~  179 (229)
                      .+||+|++|++.......+. ...........++..+.+++++|+.
T Consensus       113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            58999999998643222111 0011123345677888886666654

>PLN02672 methionine S-methyltransferase

Probab=98.93  E-value=3.5e-09  Score=103.29  Aligned_cols=129  Identities=14%  Similarity=0.101  Sum_probs=86.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC----------------CCCeEE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI----------------DGAVVL  114 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~----------------~~~~~~  114 (229)
                      +.+|||||||+|.++..+++..         +..+|+|+|+++. .          .+                .+++++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~---------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~  189 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKW---------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY  189 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence            4689999999999999999876         5679999999971 0          01                246778


Q ss_pred             ecCCCCChhHHHHHHHHhCC--CCccEEEeCCCCCCCCC--------Cccc---------------H----HHHHHHHHH
Q psy1489         115 SKCDFTQPDIQDRLVTILKD--DKLDVVLSDMAPNATGM--------REMD---------------H----DLITQLAIA  165 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~--~~~D~V~sd~~~~~~g~--------~~~d---------------~----~~~~~~~~~  165 (229)
                       ++|+.+.         +.+  .+||+|+||++--..+.        ...+               .    ..-+.....
T Consensus       190 -~sDl~~~---------~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~  259 (1082)
T PLN02672        190 -ESDLLGY---------CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIAR  259 (1082)
T ss_pred             -ECchhhh---------ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHH
Confidence             8887652         212  36999999986211110        0000               0    122345578


Q ss_pred             HHHHHHHcccCCCEEEEeecCCCChHHHH-HHHHhh-CCeeEEEcCC
Q psy1489         166 VIRFAVTYSKPGADCLIKIWDGRNRPQLE-ESITRF-YSQVKILKPP  210 (229)
Q Consensus       166 ~l~~~~~~LkpgG~~v~~~~~~~~~~~~~-~~l~~~-F~~v~~~kp~  210 (229)
                      ++..+.++|+|||.+++++-.... +.+. +.+.+. |..+++++-.
T Consensus       260 i~~~a~~~L~pgG~l~lEiG~~q~-~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        260 AVEEGISVIKPMGIMIFNMGGRPG-QAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             HHHHHHHhccCCCEEEEEECccHH-HHHHHHHHHHCCCCeeEEeeeh
Confidence            899999999999999998854432 4455 355443 7777777654

>PRK06202 hypothetical protein; Provisional

Probab=98.91  E-value=6.2e-09  Score=85.98  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .++.+|||+|||+|.++..+++.....     .+..+|+|+|+++ |.       ...++.+. ..+....      .  
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~-----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~l------~--  124 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRD-----GLRLEVTAIDPDPRAVAFARANPRRPGVTFR-QAVSDEL------V--  124 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhC-----CCCcEEEEEcCCHHHHHHHHhccccCCCeEE-EEecccc------c--
Confidence            456899999999999999988754200     0345999999997 31       11345554 4443331      1  


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ..+++||+|+++...     +..+.    .....+++++.++++  |.+++..+..
T Consensus       125 ~~~~~fD~V~~~~~l-----hh~~d----~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        125 AEGERFDVVTSNHFL-----HHLDD----AEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             ccCCCccEEEECCee-----ecCCh----HHHHHHHHHHHHhcC--eeEEEecccc
Confidence            246789999997653     11111    123468888999998  4555544443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.90  E-value=7.7e-10  Score=89.97  Aligned_cols=94  Identities=28%  Similarity=0.389  Sum_probs=65.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|++|||+|||+|..+..++...+        +.++|++||+.+ +.          .+.++.++ .+|.....    
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg--------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~-~gdg~~g~----  136 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVG--------PVGRVVSVERDPELAERARRNLARLGIDNVEVV-VGDGSEGW----  136 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHS--------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEE-ES-GGGTT----
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcC--------ccceEEEECccHHHHHHHHHHHHHhccCceeEE-Ecchhhcc----
Confidence            68999999999999999999999987        677999999986 11          24578888 88865421    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          -...+||.|++.++.     +...            ....+.|++||++|+-+-.
T Consensus       137 ----~~~apfD~I~v~~a~-----~~ip------------~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  137 ----PEEAPFDRIIVTAAV-----PEIP------------EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             ----GGG-SEEEEEESSBB-----SS--------------HHHHHTEEEEEEEEEEESS
T ss_pred             ----ccCCCcCEEEEeecc-----chHH------------HHHHHhcCCCcEEEEEEcc
Confidence                224589999997753     1111            2266779999999986543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.89  E-value=4e-09  Score=84.82  Aligned_cols=70  Identities=20%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ++++.+|||+|||+|.++..+++..          ...++|+|+++ +.   ...++.++ .+|+.+.     +. .+++
T Consensus        11 i~~~~~iLDiGcG~G~~~~~l~~~~----------~~~~~giD~s~~~i~~a~~~~~~~~-~~d~~~~-----l~-~~~~   73 (194)
T TIGR02081        11 IPPGSRVLDLGCGDGELLALLRDEK----------QVRGYGIEIDQDGVLACVARGVNVI-QGDLDEG-----LE-AFPD   73 (194)
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHhcc----------CCcEEEEeCCHHHHHHHHHcCCeEE-EEEhhhc-----cc-ccCC
Confidence            4578899999999999998887653          24789999997 21   12456777 7776541     10 1446


Q ss_pred             CCccEEEeCCC
Q psy1489         135 DKLDVVLSDMA  145 (229)
Q Consensus       135 ~~~D~V~sd~~  145 (229)
                      ++||+|++..+
T Consensus        74 ~sfD~Vi~~~~   84 (194)
T TIGR02081        74 KSFDYVILSQT   84 (194)
T ss_pred             CCcCEEEEhhH
Confidence            78999999654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1122|consensus

Probab=98.88  E-value=2.7e-08  Score=86.91  Aligned_cols=133  Identities=20%  Similarity=0.246  Sum_probs=90.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.||||+|++||+-+.++|..+.        ..|.|+|.|.+.-  .         ...+..+. ..|.....    
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMk--------n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~-n~D~~ef~----  305 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMK--------NTGVIFANDSNENRLKSLKANLHRLGVTNTIVS-NYDGREFP----  305 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHc--------CCceEEecccchHHHHHHHHHHHHhCCCceEEE-ccCccccc----
Confidence            46899999999999999999999887        6789999998751  0         12344455 55544310    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCccc-----------HHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMD-----------HDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~~~~~~  193 (229)
                       ...++. +||-|+.|+++..+|+-..+           ......++.+.|..|.+++++||.+|-.+   ....+...+
T Consensus       306 -~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV  383 (460)
T KOG1122|consen  306 -EKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVV  383 (460)
T ss_pred             -ccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHH
Confidence             012444 89999999998776664433           22334577789999999999999998544   333443334


Q ss_pred             HHHHHhhCCeeEEE
Q psy1489         194 EESITRFYSQVKIL  207 (229)
Q Consensus       194 ~~~l~~~F~~v~~~  207 (229)
                      -+.|.. |-.+++.
T Consensus       384 ~yaL~K-~p~~kL~  396 (460)
T KOG1122|consen  384 DYALKK-RPEVKLV  396 (460)
T ss_pred             HHHHHh-CCceEec
Confidence            455554 4445444

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=98.88  E-value=1.8e-08  Score=82.75  Aligned_cols=150  Identities=21%  Similarity=0.259  Sum_probs=83.3

Q ss_pred             cCCCCeeEeecCCC--Cch--HHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAP--GSW--SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~--s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ++..++||.||+|+  |.-  +..|.+.++        .++.++-.|+.+.....+..+  .+|...         ...+
T Consensus        59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP--------~~ailvDnDi~d~vSDa~~~~--~~Dc~t---------~~~~  119 (299)
T PF06460_consen   59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLP--------EDAILVDNDIRDYVSDADQSI--VGDCRT---------YMPP  119 (299)
T ss_dssp             --TT-EEEEES---TTSB-HHHHHHHHHS---------TT-EEEEEESS--B-SSSEEE--ES-GGG---------EEES
T ss_pred             eccCcEEEEecccccCCcCCchHHHHHhCC--------CCcEEEecchhhhccccCCce--eccccc---------cCCC
Confidence            34579999999876  321  456667764        456888999987433333333  466544         2446


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS  214 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~  214 (229)
                      .+||+|+|||--.....-+.+.........-+...+...|+-||.+.+|+-......++.+ +-++|+.+++|.. +-..
T Consensus       120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lye-l~~~F~~wt~FcT-~VNt  197 (299)
T PF06460_consen  120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYE-LMGYFSWWTCFCT-AVNT  197 (299)
T ss_dssp             S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHH-HHTTEEEEEEEEE-GGGT
T ss_pred             CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHH-HHhhcccEEEEec-ccCc
Confidence            7899999999521111111111111122334566678889999999999977776455555 5567999999964 6678


Q ss_pred             CCceEEEEeccCCCC
Q psy1489         215 HSAELFLLGRGFKGK  229 (229)
Q Consensus       215 ~s~E~Y~v~~~~~~~  229 (229)
                      +|||.++||.++.|.
T Consensus       198 SSSEaFLigiNYLg~  212 (299)
T PF06460_consen  198 SSSEAFLIGINYLGK  212 (299)
T ss_dssp             TSS-EEEEEEEE-SS
T ss_pred             cccceeEEeeeccCc
Confidence            999999999999874

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.88  E-value=9e-09  Score=84.38  Aligned_cols=95  Identities=15%  Similarity=0.051  Sum_probs=64.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C------CC---------------CCCeEEec
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y------PI---------------DGAVVLSK  116 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~------~~---------------~~~~~~~~  116 (229)
                      .++.+|||+|||.|..+..||++ |          ..|+|||+++.  .      .+               ..+++. +
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~-G----------~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~-~  103 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ-G----------HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIY-C  103 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC-C----------CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEE-E
Confidence            46789999999999999999975 3          59999999962  1      11               235666 7


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +|+.+...       -....||+|+.-...         +....+.....+..+.++|+|||++++
T Consensus       104 ~D~~~l~~-------~~~~~fd~v~D~~~~---------~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        104 GDFFALTA-------ADLADVDAVYDRAAL---------IALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CcccCCCc-------ccCCCeeEEEehHhH---------hhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            88776321       012478999864322         011123445778889999999997544

>KOG1271|consensus

Probab=98.87  E-value=7.1e-09  Score=81.14  Aligned_cols=123  Identities=18%  Similarity=0.163  Sum_probs=81.1

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC-CeEEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG-AVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~-~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+|||||||.|.+...|++.-         -.+.++|||.++-           ...++ +++. +.||+++.       
T Consensus        69 ~~VlDLGtGNG~~L~~L~~eg---------f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~-q~DI~~~~-------  131 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEG---------FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ-QLDITDPD-------  131 (227)
T ss_pred             cceeeccCCchHHHHHHHHhc---------CCCCccccccCHHHHHHHHHHHHhcCCCcceeEE-EeeccCCc-------
Confidence            499999999999988888763         3456999999971           11233 7888 99999863       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEEE
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKIL  207 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~  207 (229)
                       +..++||+|+--+..++-+.+.......   +..-+....++|+|||.|+|. -+....+++.+.+... |..+..+
T Consensus       132 -~~~~qfdlvlDKGT~DAisLs~d~~~~r---~~~Y~d~v~~ll~~~gifvIt-SCN~T~dELv~~f~~~~f~~~~tv  204 (227)
T KOG1271|consen  132 -FLSGQFDLVLDKGTLDAISLSPDGPVGR---LVVYLDSVEKLLSPGGIFVIT-SCNFTKDELVEEFENFNFEYLSTV  204 (227)
T ss_pred             -ccccceeEEeecCceeeeecCCCCcccc---eeeehhhHhhccCCCcEEEEE-ecCccHHHHHHHHhcCCeEEEEee
Confidence             4467899988655443322221111000   112345577889999999984 3445568888888765 6555444

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.86  E-value=2.8e-08  Score=87.63  Aligned_cols=121  Identities=19%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC--CCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI--DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~--~~~~~~~~~D~~~~~~~~~  127 (229)
                      .|++||||.|-||+||.++|..          ++.+|++||+|.-           +.+  ....++ ++|+.+     .
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g----------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i-~~Dvf~-----~  280 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG----------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFI-VGDVFK-----W  280 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc----------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeee-hhhHHH-----H
Confidence            3899999999999999998864          4569999999961           122  224677 777554     2


Q ss_pred             HHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHh
Q psy1489         128 LVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITR  199 (229)
Q Consensus       128 i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~  199 (229)
                      +.... .+.+||+|+.|++.-..+-..  .+.........+..+.++|+|||++++..-.. .....+.+.+..
T Consensus       281 l~~~~~~g~~fDlIilDPPsF~r~k~~--~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~  352 (393)
T COG1092         281 LRKAERRGEKFDLIILDPPSFARSKKQ--EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR  352 (393)
T ss_pred             HHHHHhcCCcccEEEECCcccccCccc--chhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence            33322 245899999998743222111  23444455678888999999999998866433 345555555543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.85  E-value=7.1e-09  Score=83.92  Aligned_cols=115  Identities=15%  Similarity=0.106  Sum_probs=74.2

Q ss_pred             hhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCCh
Q psy1489          44 RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQP  122 (229)
Q Consensus        44 r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~  122 (229)
                      +...+|.++..+.+. .+=.++||||||||-.+..+..+.           .+++|||+|. |.....     ..++.+.
T Consensus       109 ~vP~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a-----------~~ltGvDiS~nMl~kA~-----eKg~YD~  171 (287)
T COG4976         109 SVPELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA-----------DRLTGVDISENMLAKAH-----EKGLYDT  171 (287)
T ss_pred             ccHHHHHHHHHhccC-CccceeeecccCcCcccHhHHHHH-----------hhccCCchhHHHHHHHH-----hccchHH
Confidence            334445554444331 123689999999999999988876           4899999998 422211     1112221


Q ss_pred             hHHHHHH---HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         123 DIQDRLV---TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       123 ~~~~~i~---~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      -.+....   +...+++||+|.+           .|....+..++.++-.+..+|+|||.|.+++-+
T Consensus       172 L~~Aea~~Fl~~~~~er~DLi~A-----------aDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         172 LYVAEAVLFLEDLTQERFDLIVA-----------ADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             HHHHHHHHHhhhccCCcccchhh-----------hhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence            1122222   2234678999998           344555566778888999999999999988743

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.85  E-value=3.9e-08  Score=79.85  Aligned_cols=123  Identities=20%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-------CCC------CCCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-------YPI------DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-------~~~------~~~~~~~~~D~~~~~~~~  126 (229)
                      +.|.+|||.|.|=|..++..+++          ++-+|+.++.+|.       +|.      .+++++ .+|+.+     
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~r----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~ii-lGD~~e-----  196 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALER----------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKII-LGDAYE-----  196 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHc----------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEe-cccHHH-----
Confidence            45999999999999999998876          3358999988871       111      146778 888665     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC------CCC-hHHHHHHHHh
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD------GRN-RPQLEESITR  199 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~------~~~-~~~~~~~l~~  199 (229)
                       +.+.+++++||+|+.|++--       ..... --.+...++.+|+|||||.+.-.+-.      +.+ ...+.+.|++
T Consensus       197 -~V~~~~D~sfDaIiHDPPRf-------S~Age-LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~  267 (287)
T COG2521         197 -VVKDFDDESFDAIIHDPPRF-------SLAGE-LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR  267 (287)
T ss_pred             -HHhcCCccccceEeeCCCcc-------chhhh-HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence             44558899999999998520       01110 11347789999999999999765532      222 3456677777


Q ss_pred             h-CCeeEEE
Q psy1489         200 F-YSQVKIL  207 (229)
Q Consensus       200 ~-F~~v~~~  207 (229)
                      . |..|...
T Consensus       268 vGF~~v~~~  276 (287)
T COG2521         268 VGFEVVKKV  276 (287)
T ss_pred             cCceeeeee
Confidence            6 7766554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.83  E-value=1e-08  Score=85.30  Aligned_cols=119  Identities=21%  Similarity=0.297  Sum_probs=81.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.||.+||+-|.|+|.++.+|+..++        |.|+|+..|..+-           ..+ .++.+. ..|+.+...  
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~--------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~-~~Dv~~~g~--  106 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVG--------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVH-HRDVCEEGF--  106 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEE-ES-GGCG----
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhC--------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeE-ecceecccc--
Confidence            57999999999999999999999998        8999999999851           123 357777 888865321  


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc-cCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS-KPGADCLIKIWDGRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L-kpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v  204 (229)
                        .+.+ +..+|.|+.|++-         +       ..++..+.+.| ++||.+++-..+-.......+.|+.. |..+
T Consensus       107 --~~~~-~~~~DavfLDlp~---------P-------w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i  167 (247)
T PF08704_consen  107 --DEEL-ESDFDAVFLDLPD---------P-------WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI  167 (247)
T ss_dssp             --STT--TTSEEEEEEESSS---------G-------GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred             --cccc-cCcccEEEEeCCC---------H-------HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence              0111 3679999999963         1       13566688899 89999988665555566677777664 6555


Q ss_pred             EEE
Q psy1489         205 KIL  207 (229)
Q Consensus       205 ~~~  207 (229)
                      +++
T Consensus       168 ~~~  170 (247)
T PF08704_consen  168 ETV  170 (247)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.83  E-value=1.3e-08  Score=84.33  Aligned_cols=99  Identities=13%  Similarity=0.116  Sum_probs=68.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+..+|||+|||+|.-+..++..++        ++++|+++|+++ +.          .+ ..++++ .+|+.+.  ...
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~--------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~-~gda~~~--L~~  135 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALP--------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFI-QSDALSA--LDQ  135 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EccHHHH--HHH
Confidence            4578999999999998888887765        578999999997 11          12 246777 8886652  111


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +....+.++||+|+.|+..              ......+..+.++|+|||.+++.
T Consensus       136 l~~~~~~~~fD~VfiDa~k--------------~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDADK--------------PNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HHhCCCCCCCCEEEECCCH--------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            2111124689999998742              11224567788999999998863

>PLN02366 spermidine synthase

Probab=98.81  E-value=9.8e-08  Score=82.09  Aligned_cols=123  Identities=12%  Similarity=0.045  Sum_probs=80.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~  124 (229)
                      ++..+||++|||.|+.+..+++..         +..+|+.||+++. .              .-++++++ .+|....  
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~---------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi-~~Da~~~--  157 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS---------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH-IGDGVEF--  157 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE-EChHHHH--
Confidence            456899999999999999888652         3468999999872 1              12357777 7765431  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee---cC-CCChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI---WD-GRNRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~-~~~~~~~~~~l~~~  200 (229)
                         +. ..+++.||+|++|.... .+.  ..+.    .....++.+.+.|+|||.+++..   |. ......+...++..
T Consensus       158 ---l~-~~~~~~yDvIi~D~~dp-~~~--~~~L----~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~  226 (308)
T PLN02366        158 ---LK-NAPEGTYDAIIVDSSDP-VGP--AQEL----FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET  226 (308)
T ss_pred             ---Hh-hccCCCCCEEEEcCCCC-CCc--hhhh----hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence               11 13356899999997531 111  1111    12467788999999999998643   21 22345667778888


Q ss_pred             C-CeeE
Q psy1489         201 Y-SQVK  205 (229)
Q Consensus       201 F-~~v~  205 (229)
                      | ..+.
T Consensus       227 F~~~v~  232 (308)
T PLN02366        227 FKGSVN  232 (308)
T ss_pred             CCCcee
Confidence            8 4453

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.5e-08  Score=79.48  Aligned_cols=90  Identities=24%  Similarity=0.395  Sum_probs=67.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++++||++|||+|..+..+++..           ++|+++|+.+ +          ..+.++.+. ++|-..-     
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~-----------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~-~gDG~~G-----  132 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLV-----------GRVVSIERIEELAEQARRNLETLGYENVTVR-HGDGSKG-----  132 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHh-----------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEE-ECCcccC-----
Confidence            6789999999999999999999886           4999999985 1          134578888 8887652     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         +-+..+||.|+..++..     ...            +...+.|++||++++-+-
T Consensus       133 ---~~~~aPyD~I~Vtaaa~-----~vP------------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         133 ---WPEEAPYDRIIVTAAAP-----EVP------------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             ---CCCCCCcCEEEEeeccC-----CCC------------HHHHHhcccCCEEEEEEc
Confidence               12347899999877531     111            125567999999998765

>KOG1975|consensus

Probab=98.79  E-value=1.1e-08  Score=86.64  Aligned_cols=151  Identities=19%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             hccCcHHHHHHHhcCccchhhhhhHhhhhhc---------CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE
Q psy1489          26 RQFADPYVQKAKKENYRCRSAFKLLEIDSKI---------KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL   96 (229)
Q Consensus        26 ~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~---------~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~   96 (229)
                      +..+++|.+. ...++..|..-+++.+-.--         .+.+++..++|||||-|+-..---+.          .-+.
T Consensus        74 ~~Va~HYN~~-~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA----------gI~~  142 (389)
T KOG1975|consen   74 SEVAEHYNER-TEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA----------GIGE  142 (389)
T ss_pred             HHHHHHHHHH-HHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh----------cccc
Confidence            4466777654 33345555433332221111         12467899999999999875443321          3468


Q ss_pred             EEEEeCCCCC------------CC-----CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHH
Q psy1489          97 VLSVDKLPIY------------PI-----DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI  159 (229)
Q Consensus        97 v~gvD~~~~~------------~~-----~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~  159 (229)
                      ++|+||....            ..     -.+.++ .+|.+.......+.  .++.+||+|-|-.+...       .+..
T Consensus       143 ~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~-~~Dc~~~~l~d~~e--~~dp~fDivScQF~~HY-------aFet  212 (389)
T KOG1975|consen  143 YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI-AADCFKERLMDLLE--FKDPRFDIVSCQFAFHY-------AFET  212 (389)
T ss_pred             eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE-EeccchhHHHHhcc--CCCCCcceeeeeeeEee-------eecc
Confidence            9999998621            11     136788 88887755433322  24455999998665421       2344


Q ss_pred             HHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       160 ~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      .+....+|..+.+.|+|||.||..+   ++...+++.|+..
T Consensus       213 ee~ar~~l~Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  213 EESARIALRNVAKCLKPGGVFIGTI---PDSDVIIKRLRAG  250 (389)
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEEec---CcHHHHHHHHHhc
Confidence            4567788999999999999998744   5667788888764

>TIGR00417 speE spermidine synthase

Probab=98.75  E-value=1.9e-07  Score=79.07  Aligned_cols=141  Identities=11%  Similarity=0.042  Sum_probs=85.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C------CCCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P------IDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~------~~~~~~~~~~D~~~~~~~  125 (229)
                      ...+||+||||.|+.+..+++..         +..+++++|+++ +.        .      .++++++ .+|..+    
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~---------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~-~~D~~~----  137 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK---------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ-IDDGFK----  137 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC---------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE-ECchHH----
Confidence            45699999999999988887653         346899999996 21        0      1234555 444322    


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhhC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRFY  201 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~F  201 (229)
                       .+..  .+++||+|++|..... +.  ....    .....++.+.+.|+|||.+++..-...    ....+...++..|
T Consensus       138 -~l~~--~~~~yDvIi~D~~~~~-~~--~~~l----~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F  207 (270)
T TIGR00417       138 -FLAD--TENTFDVIIVDSTDPV-GP--AETL----FTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAF  207 (270)
T ss_pred             -HHHh--CCCCccEEEEeCCCCC-Cc--ccch----hHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHC
Confidence             1221  1468999999875211 11  1110    124677889999999999998532211    1344455677789


Q ss_pred             CeeEEEcCC-CCCCCCceEEEEecc
Q psy1489         202 SQVKILKPP-SSRSHSAELFLLGRG  225 (229)
Q Consensus       202 ~~v~~~kp~-~sr~~s~E~Y~v~~~  225 (229)
                      ..+..+... .+-....-.|++|.+
T Consensus       208 ~~v~~~~~~vp~~~~g~~~~~~as~  232 (270)
T TIGR00417       208 PITEYYTANIPTYPSGLWTFTIGSK  232 (270)
T ss_pred             CCeEEEEEEcCccccchhEEEEEEC
Confidence            888766532 222233346777754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.74  E-value=1e-08  Score=82.66  Aligned_cols=119  Identities=12%  Similarity=0.125  Sum_probs=79.7

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ..+||||||.|.+...+|+..         |+..++|+|+..  +         ..+.|+.++ ++|....     +...
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~---------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~-~~da~~~-----l~~~   83 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRN---------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFL-RGDAREL-----LRRL   83 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHS---------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEE-ES-CTTH-----HHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHC---------CCCCEEEEecchHHHHHHHHHHHhhcccceEEE-EccHHHH-----Hhhc
Confidence            489999999999999999986         788999999985  1         256899999 9998873     4455


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                      ++++++|-|....+--...   ..|....-.....+....+.|+|||.+.+.+....-....++.+..
T Consensus        84 ~~~~~v~~i~i~FPDPWpK---~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   84 FPPGSVDRIYINFPDPWPK---KRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             STTTSEEEEEEES-----S---GGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             ccCCchheEEEeCCCCCcc---cchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            7778999999876521111   0111111122467888999999999998877554334445555555

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.72  E-value=9.6e-08  Score=66.90  Aligned_cols=92  Identities=26%  Similarity=0.303  Sum_probs=65.6

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C------CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y------PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~------~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +|+|+|||+|.++..+++ .         +..+++++|+++.     .      ....+.+. ..|+.+...       .
T Consensus         1 ~ildig~G~G~~~~~~~~-~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~   62 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G---------PGARVTGVDISPVALELARKAAAALLADNVEVL-KGDAEELPP-------E   62 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C---------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEE-EcChhhhcc-------c
Confidence            589999999999988887 2         4579999999861     0      12345666 777666321       2


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+|+|+++.+....          .......+..+.+.|+|||.+++.
T Consensus        63 ~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          63 ADESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            35679999998754211          234457788899999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG2904|consensus

Probab=98.72  E-value=1e-07  Score=79.08  Aligned_cols=136  Identities=17%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCC-CeEEecCCCCChhHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDG-AVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~-~~~~~~~D~~~~~~~~~i~  129 (229)
                      +..+||+|||+|+++..++.-+         +++.|+|+|.|+.+           .+.+ +.++ ..+.+. +...  .
T Consensus       149 ~~~ildlgtGSGaIslsll~~L---------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~-~~~me~-d~~~--~  215 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGL---------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI-HNIMES-DASD--E  215 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcC---------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE-eccccc-cccc--c
Confidence            4579999999999999999877         67899999999721           1222 3333 222211 1100  0


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHH-------------------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCCh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHD-------------------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR  190 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~-------------------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~  190 (229)
                      ..+.+++.|+++||++-    +...|..                   .-+......+..+.|+|+|||.+.+..-..+.-
T Consensus       216 ~~l~~~~~dllvsNPPY----I~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~  291 (328)
T KOG2904|consen  216 HPLLEGKIDLLVSNPPY----IRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH  291 (328)
T ss_pred             cccccCceeEEecCCCc----ccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence            11456899999998762    2222211                   002233356778999999999999876533322


Q ss_pred             HHHH-HH----HHhhCCeeEEEcCCCCCC
Q psy1489         191 PQLE-ES----ITRFYSQVKILKPPSSRS  214 (229)
Q Consensus       191 ~~~~-~~----l~~~F~~v~~~kp~~sr~  214 (229)
                      ..+. ..    ...++..+.++..-+.|+
T Consensus       292 ~~lv~~~m~s~~~d~~~~~~v~~Df~~~~  320 (328)
T KOG2904|consen  292 SYLVRIWMISLKDDSNGKAAVVSDFAGRP  320 (328)
T ss_pred             cHHHHHHHHhchhhccchhheeecccCCc
Confidence            2222 22    233456666666555443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.71  E-value=1e-07  Score=78.00  Aligned_cols=95  Identities=22%  Similarity=0.157  Sum_probs=63.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+.+|||+|||+|.++..+++..           .+++++|+++ +.          ...++.+. ..|+.+.      .
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~-----------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~------~  106 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG-----------ANVTGIDASEENIEVAKLHAKKDPLLKIEYR-CTSVEDL------A  106 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-----------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEE-eCCHHHh------h
Confidence            47899999999999998887642           4799999986 21          11135555 5554331      1


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      . ...++||+|++....           ........++..+.++|+|||.+++...
T Consensus       107 ~-~~~~~~D~i~~~~~l-----------~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       107 E-KGAKSFDVVTCMEVL-----------EHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             c-CCCCCccEEEehhHH-----------HhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            0 113689999995432           1122234678889999999999887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.71  E-value=4.9e-08  Score=79.90  Aligned_cols=90  Identities=19%  Similarity=0.132  Sum_probs=60.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..++...           .+|+|+|+++ |.          .. .++.+. .+|+.+      
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~-----------~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~------  115 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRG-----------AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE-VNDLLS------  115 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-ECChhh------
Confidence            457899999999999999988642           5899999997 31          11 256777 777665      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                          ++ ++||+|++....        .+. .......++..+.+++++++.+.
T Consensus       116 ----~~-~~fD~ii~~~~l--------~~~-~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       116 ----LC-GEFDIVVCMDVL--------IHY-PASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             ----CC-CCcCEEEEhhHH--------HhC-CHHHHHHHHHHHHHHhCCCEEEE
Confidence                22 689999984321        010 01224467777888887665444

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.70  E-value=8.7e-08  Score=75.36  Aligned_cols=68  Identities=24%  Similarity=0.326  Sum_probs=52.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..++++.           ++|+|+|+++ +.        ...+++++ .+|+.+..      
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~-----------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii-~~D~~~~~------   72 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERA-----------ARVTAIEIDPRLAPRLREKFAAADNLTVI-HGDALKFD------   72 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcC-----------CeEEEEECCHHHHHHHHHHhccCCCEEEE-ECchhcCC------
Confidence            3567899999999999999998862           5899999997 21        12467888 88887632      


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                        +++..||.|++|.+.
T Consensus        73 --~~~~~~d~vi~n~Py   87 (169)
T smart00650       73 --LPKLQPYKVVGNLPY   87 (169)
T ss_pred             --ccccCCCEEEECCCc
Confidence              234469999998764

>PRK03612 spermidine synthase; Provisional

Probab=98.69  E-value=8.9e-08  Score=88.12  Aligned_cols=119  Identities=16%  Similarity=0.144  Sum_probs=75.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----C-------------CCCCeEEecCCCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----P-------------IDGAVVLSKCDFTQ  121 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----~-------------~~~~~~~~~~D~~~  121 (229)
                      ++..+|||+|||+|..+..++++ +        +..+|++||+++ +.    .             .++++++ .+|..+
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~--------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi-~~Da~~  365 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-P--------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV-NDDAFN  365 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-C--------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE-EChHHH
Confidence            45689999999999999888864 2        236999999986 21    1             1345666 666543


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHHHH
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEESI  197 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~~l  197 (229)
                           .+..  .+++||+|++|.+. ..+ ....+    -...+.++.+.+.|+|||.+++..-.    .....++.+.+
T Consensus       366 -----~l~~--~~~~fDvIi~D~~~-~~~-~~~~~----L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l  432 (521)
T PRK03612        366 -----WLRK--LAEKFDVIIVDLPD-PSN-PALGK----LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATL  432 (521)
T ss_pred             -----HHHh--CCCCCCEEEEeCCC-CCC-cchhc----cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHH
Confidence                 1221  24689999999642 111 00001    01235678899999999999985422    22244566667


Q ss_pred             Hhh-C
Q psy1489         198 TRF-Y  201 (229)
Q Consensus       198 ~~~-F  201 (229)
                      ++. |
T Consensus       433 ~~~gf  437 (521)
T PRK03612        433 EAAGL  437 (521)
T ss_pred             HHcCC
Confidence            666 6

>PRK01581 speE spermidine synthase; Validated

Probab=98.66  E-value=3.2e-07  Score=79.93  Aligned_cols=125  Identities=15%  Similarity=0.065  Sum_probs=77.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----C-------------CCCCeEEecCCCCCh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----P-------------IDGAVVLSKCDFTQP  122 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----~-------------~~~~~~~~~~D~~~~  122 (229)
                      ...+||++|||.|+.+..+++..         +..+|++||+++ |.    .             .++++++ .+|..+ 
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~---------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv-i~Da~~-  218 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYE---------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH-VCDAKE-  218 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcC---------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE-ECcHHH-
Confidence            45799999999999887777652         456999999997 21    1             1345555 555443 


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC----hHHHHHHHH
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN----RPQLEESIT  198 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~----~~~~~~~l~  198 (229)
                          .+..  .++.||+|++|.+. ..+.. ...    -.....+..+.+.|+|||.|++-.-....    ...+...++
T Consensus       219 ----fL~~--~~~~YDVIIvDl~D-P~~~~-~~~----LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~  286 (374)
T PRK01581        219 ----FLSS--PSSLYDVIIIDFPD-PATEL-LST----LYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIE  286 (374)
T ss_pred             ----HHHh--cCCCccEEEEcCCC-ccccc-hhh----hhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHH
Confidence                1221  24679999999642 11110 001    11246788899999999999875322211    133456677


Q ss_pred             hhCCeeEEEc
Q psy1489         199 RFYSQVKILK  208 (229)
Q Consensus       199 ~~F~~v~~~k  208 (229)
                      ..|..+..+.
T Consensus       287 ~af~~v~~y~  296 (374)
T PRK01581        287 HAGLTVKSYH  296 (374)
T ss_pred             HhCCceEEEE
Confidence            7676555443

>KOG1541|consensus

Probab=98.66  E-value=2.3e-08  Score=80.56  Aligned_cols=139  Identities=16%  Similarity=0.219  Sum_probs=80.3

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC------CCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP------IDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~------~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +.-|||+|||+|--+..+.+.           ....+|+|+|+ |..      ++ -.++ .+|.-..     +  .+.+
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~-----------Gh~wiGvDiSpsML~~a~~~e~e-gdli-l~DMG~G-----l--pfrp  110 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS-----------GHQWIGVDISPSMLEQAVERELE-GDLI-LCDMGEG-----L--PFRP  110 (270)
T ss_pred             CcEEEEeccCCCcchheeccC-----------CceEEeecCCHHHHHHHHHhhhh-cCee-eeecCCC-----C--CCCC
Confidence            568999999999888876653           36899999998 532      22 2344 5555432     1  2668


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH----HhhCC-eeEEEcC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI----TRFYS-QVKILKP  209 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l----~~~F~-~v~~~kp  209 (229)
                      +.||-+||-.+..+.-.-+.........+...+...+..|++|++.++..+...+ .++-..+    ..=|. .+.+--|
T Consensus       111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~-~q~d~i~~~a~~aGF~GGlvVd~P  189 (270)
T KOG1541|consen  111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE-AQIDMIMQQAMKAGFGGGLVVDWP  189 (270)
T ss_pred             CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch-HHHHHHHHHHHhhccCCceeeecc
Confidence            8999999865532211111111111123346677788899999999996655432 3322222    22253 3444445


Q ss_pred             CCCCCCCceEEEEe
Q psy1489         210 PSSRSHSAELFLLG  223 (229)
Q Consensus       210 ~~sr~~s~E~Y~v~  223 (229)
                      .+.|+  ..-|+|-
T Consensus       190 es~k~--kK~yLVL  201 (270)
T KOG1541|consen  190 ESTKN--KKYYLVL  201 (270)
T ss_pred             ccccc--ceeEEEE
Confidence            55443  3455553

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.66  E-value=2.1e-07  Score=80.21  Aligned_cols=136  Identities=21%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecC-CCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKC-DFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~-D~~~~~~~~  126 (229)
                      .++|+.|||==||||++...+. .+|          .+++|+|++. |.          .++...+. .. |+++.+   
T Consensus       195 v~~G~~vlDPFcGTGgiLiEag-l~G----------~~viG~Did~~mv~gak~Nl~~y~i~~~~~~-~~~Da~~lp---  259 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAG-LMG----------ARVIGSDIDERMVRGAKINLEYYGIEDYPVL-KVLDATNLP---  259 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhh-hcC----------ceEeecchHHHHHhhhhhhhhhhCcCceeEE-EecccccCC---
Confidence            6789999999999999988855 444          6999999986 31          13344455 44 777743   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCc-ccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMRE-MDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVK  205 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~-~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~  205 (229)
                           +++..+|.|++|++-   |... .......++...+++.+.++|++||.+++-..    ....-+.....|.-+.
T Consensus       260 -----l~~~~vdaIatDPPY---Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~v~~  327 (347)
T COG1041         260 -----LRDNSVDAIATDPPY---GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFKVLG  327 (347)
T ss_pred             -----CCCCccceEEecCCC---CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCceEEE
Confidence                 666679999999975   2222 11112346778999999999999999987554    1222233334465555


Q ss_pred             EEcCCCCCCCCceEEE
Q psy1489         206 ILKPPSSRSHSAELFL  221 (229)
Q Consensus       206 ~~kp~~sr~~s~E~Y~  221 (229)
                      .+.--.-++=...+|+
T Consensus       328 ~~~~~~H~sLtR~i~v  343 (347)
T COG1041         328 RFTMRVHGSLTRVIYV  343 (347)
T ss_pred             EEEEeecCceEEEEEE
Confidence            5433222223444553

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.65  E-value=1.4e-07  Score=77.78  Aligned_cols=97  Identities=19%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------CCCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++.+|||+|||+|.++..+++. +          .+++++|+++ +..         -..+.+. ..|+.+      +.
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~------~~  108 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL-G----------ADVTGIDASEENIEVARLHALESGLKIDYR-QTTAEE------LA  108 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-C----------CeEEEEcCCHHHHHHHHHHHHHcCCceEEE-ecCHHH------hh
Confidence            46789999999999999888765 2          5899999986 210         0124455 555433      11


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      . ..++.||+|++......           ......++..+.++|+|||.+++..+.
T Consensus       109 ~-~~~~~fD~Ii~~~~l~~-----------~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        109 A-EHPGQFDVVTCMEMLEH-----------VPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             h-hcCCCccEEEEhhHhhc-----------cCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            1 23578999998543211           111245788899999999999986543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.64  E-value=1.1e-07  Score=76.74  Aligned_cols=100  Identities=15%  Similarity=0.073  Sum_probs=63.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||||||+|.++..++.+.          ..+|+++|+++-           ..+.++.++ .+|+.+.     +
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~----------a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~-~~D~~~~-----l  115 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY----------AAGATLLEMDRAVAQQLIKNLATLKAGNARVV-NTNALSF-----L  115 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEE-EchHHHH-----H
Confidence            357899999999999998655542          369999999861           123456777 7775431     2


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ..  ....||+|++|++.. .|   .     .......+.. ..+|+|+|.+++.....
T Consensus       116 ~~--~~~~fDlV~~DPPy~-~g---~-----~~~~l~~l~~-~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        116 AQ--PGTPHNVVFVDPPFR-KG---L-----LEETINLLED-NGWLADEALIYVESEVE  162 (199)
T ss_pred             hh--cCCCceEEEECCCCC-CC---h-----HHHHHHHHHH-CCCcCCCcEEEEEecCC
Confidence            11  235699999998731 11   1     1111222222 24589999998876543

>PLN02476 O-methyltransferase

Probab=98.61  E-value=2.6e-07  Score=78.12  Aligned_cols=99  Identities=8%  Similarity=0.102  Sum_probs=69.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+..+|||+|+++|..+..++..++        +.++|+++|.++.           ..+ ..++++ .+|..+.  ...
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~--------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li-~GdA~e~--L~~  185 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLP--------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK-HGLAAES--LKS  185 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH--HHH
Confidence            3568999999999999999998765        5689999999971           112 256777 7775541  111


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +......+.||+|+.|+..              ......+..+.++|+|||.+++.
T Consensus       186 l~~~~~~~~FD~VFIDa~K--------------~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDADK--------------RMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             HHhcccCCCCCEEEECCCH--------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence            1111123589999998853              11235667788999999999864

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.60  E-value=1.2e-07  Score=80.39  Aligned_cols=127  Identities=21%  Similarity=0.179  Sum_probs=76.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CC--CCCCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YP--IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~--~~~~~~~~~~D~~~~~~~~  126 (229)
                      ..|.+|||+-|-||+|+.+++.-          ++.+|+.||.|.-           +.  ...++++ ++|+.+.  ..
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~g----------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~-~~Dvf~~--l~  188 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAG----------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFI-QGDVFKF--LK  188 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHT----------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEE-ES-HHHH--HH
T ss_pred             cCCCceEEecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE-ecCHHHH--HH
Confidence            35899999999999999997642          4568999999951           12  2356778 8876552  12


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhh---CC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRF---YS  202 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~---F~  202 (229)
                      .+.   ..++||+|++|++.-..+....     ......++..+.++|+|||.+++..-+. -..+.+++.+...   +.
T Consensus       189 ~~~---~~~~fD~IIlDPPsF~k~~~~~-----~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~  260 (286)
T PF10672_consen  189 RLK---KGGRFDLIILDPPSFAKSKFDL-----ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVE  260 (286)
T ss_dssp             HHH---HTT-EEEEEE--SSEESSTCEH-----HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCE
T ss_pred             HHh---cCCCCCEEEECCCCCCCCHHHH-----HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccce
Confidence            222   2568999999998544343222     1234467788999999999988655433 2344555555443   44


Q ss_pred             eeEEE
Q psy1489         203 QVKIL  207 (229)
Q Consensus       203 ~v~~~  207 (229)
                      -++..
T Consensus       261 ~~~~~  265 (286)
T PF10672_consen  261 FIERL  265 (286)
T ss_dssp             EEEEE
T ss_pred             Eeeee
Confidence            44444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.59  E-value=7.7e-08  Score=77.94  Aligned_cols=99  Identities=30%  Similarity=0.439  Sum_probs=73.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|.+||-||+++|....+++..++        +.|.|+||+.++  +.       ..+|+..+ .+|.+.+.....+ 
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg--------~~G~VYaVEfs~r~~rdL~~la~~R~NIiPI-l~DAr~P~~Y~~l-  140 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVG--------PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPI-LEDARHPEKYRML-  140 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHSTTEEEE-ES-TTSGGGGTTT-
T ss_pred             CCCCCEEEEecccCCCccchhhhccC--------CCCcEEEEEecchhHHHHHHHhccCCceeee-eccCCChHHhhcc-
Confidence            57899999999999999999999997        789999999997  22       34788878 8999987644322 


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          -+.+|+|++|.+-       .++      .+.++..+..+||+||.+++.+
T Consensus       141 ----v~~VDvI~~DVaQ-------p~Q------a~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  141 ----VEMVDVIFQDVAQ-------PDQ------ARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             ----S--EEEEEEE-SS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----cccccEEEecCCC-------hHH------HHHHHHHHHhhccCCcEEEEEE
Confidence                2389999998752       122      3456677889999999998765

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1499|consensus

Probab=98.59  E-value=1.1e-07  Score=81.56  Aligned_cols=93  Identities=24%  Similarity=0.287  Sum_probs=66.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCCC-CeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PIDG-AVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~~-~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++..|||+|||+|.+++..|+.          ++.+|+|||-+.+.          ...+ ++++ ++.+.+..      
T Consensus        60 ~dK~VlDVGcGtGILS~F~akA----------GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi-~gkvEdi~------  122 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKA----------GARKVYAVEASSIADFARKIVKDNGLEDVITVI-KGKVEDIE------  122 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHh----------CcceEEEEechHHHHHHHHHHHhcCccceEEEe-ecceEEEe------
Confidence            5899999999999999998875          45799999999742          1233 6677 88777742      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHH-HHHHHHHHHHHcccCCCEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQ-LAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~-~~~~~l~~~~~~LkpgG~~v  181 (229)
                        +|.+++|+|+|.-    .|     .....+ .+..+|-.=-++|+|||.++
T Consensus       123 --LP~eKVDiIvSEW----MG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  123 --LPVEKVDIIVSEW----MG-----YFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             --cCccceeEEeehh----hh-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence              5567999999932    12     333322 34455655667999999864

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.58  E-value=3e-07  Score=73.91  Aligned_cols=104  Identities=23%  Similarity=0.222  Sum_probs=62.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      +++..|.|+|||-+.++..+..            ..+|...|+-+.  -+  .++ .+|+.+.+        ++++.+|+
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~------------~~~V~SfDLva~--n~--~Vt-acdia~vP--------L~~~svDv  125 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN------------KHKVHSFDLVAP--NP--RVT-ACDIANVP--------LEDESVDV  125 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S---------------EEEEESS-S--ST--TEE-ES-TTS-S----------TT-EEE
T ss_pred             CCCEEEEECCCchHHHHHhccc------------CceEEEeeccCC--CC--CEE-EecCccCc--------CCCCceeE
Confidence            4567999999999988754322            237999999763  22  355 78998743        66889999


Q ss_pred             EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--CCChHHHHHHHHhh
Q psy1489         140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--GRNRPQLEESITRF  200 (229)
Q Consensus       140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~~~~~~~~~~l~~~  200 (229)
                      ++.-.+.  .|.          .....+.+|.|+|||||.+.+..-.  ..+...+.+.+..+
T Consensus       126 ~VfcLSL--MGT----------n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~  176 (219)
T PF05148_consen  126 AVFCLSL--MGT----------NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKL  176 (219)
T ss_dssp             EEEES-----SS-----------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCT
T ss_pred             EEEEhhh--hCC----------CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHC
Confidence            9985543  221          1246789999999999999875432  24678888888776

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3010|consensus

Probab=98.57  E-value=1.2e-07  Score=77.45  Aligned_cols=95  Identities=11%  Similarity=0.117  Sum_probs=57.9

Q ss_pred             CCC-eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----CCCCeEE-ecCCCCChhHHHHHHHH-h
Q psy1489          61 PGL-KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----IDGAVVL-SKCDFTQPDIQDRLVTI-L  132 (229)
Q Consensus        61 ~g~-~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----~~~~~~~-~~~D~~~~~~~~~i~~~-~  132 (229)
                      ++. .++|+|||+|.-++.+++..           .+|+|+|+++ |..    -+++... ...-+.+.+    +..+ -
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~~-----------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~----~v~L~g   96 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEHY-----------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE----MVDLLG   96 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHhh-----------hhheeecCCHHHHHHhhcCCCcccccCCccccccc----cccccC
Confidence            444 78999999998888888876           3899999997 321    1111111 000011111    1111 1


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC-EEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA-DCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG-~~v~  182 (229)
                      .++++|+|++.-     .+|..|       .+..+.++.++||+.| .+++
T Consensus        97 ~e~SVDlI~~Aq-----a~HWFd-------le~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   97 GEESVDLITAAQ-----AVHWFD-------LERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             CCcceeeehhhh-----hHHhhc-------hHHHHHHHHHHcCCCCCEEEE
Confidence            267999999943     233333       4578889999998877 5443

>KOG2361|consensus

Probab=98.54  E-value=9.3e-08  Score=78.02  Aligned_cols=110  Identities=20%  Similarity=0.215  Sum_probs=74.5

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--------PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--------~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ++|++|||-|.....+++...       +++-.|+++|.+|-  .        ....+... ..|++.+.    +.....
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~-------n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af-v~Dlt~~~----~~~~~~  141 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSP-------NNRLKVYACDFSPRAIELVKKSSGYDESRVEAF-VWDLTSPS----LKEPPE  141 (264)
T ss_pred             hheeeccCCCcccchhhhcCC-------CCCeEEEEcCCChHHHHHHHhccccchhhhccc-ceeccchh----ccCCCC
Confidence            799999999999989887652       13368999999981  1        01233444 56777654    334456


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                      .+.+|+|++-....+  +       ..+....++..+.++|||||.+++..|...+...+.
T Consensus       142 ~~svD~it~IFvLSA--i-------~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR  193 (264)
T KOG2361|consen  142 EGSVDIITLIFVLSA--I-------HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR  193 (264)
T ss_pred             cCccceEEEEEEEec--c-------ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence            788998887543211  1       112335788999999999999999877655544443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.54  E-value=5.3e-07  Score=81.47  Aligned_cols=95  Identities=17%  Similarity=0.209  Sum_probs=63.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..++.+|||+|||+|.++..+++..           .+|+|+|+++ |.          .+.+++++ .+|+.+.     
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~-----------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~-~~d~~~~-----  357 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA-----------AEVVGVEGVEAMVERARENARRNGLDNVTFY-HANLEED-----  357 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-EeChHHh-----
Confidence            3567899999999999999998763           5899999997 21          23467888 8887542     


Q ss_pred             HHH-HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVT-ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~-~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      +.. .+.+..||+|++|++-.  |.            ...+..+ .-++|++.+++..-
T Consensus       358 l~~~~~~~~~fD~Vi~dPPr~--g~------------~~~~~~l-~~~~~~~ivyvSCn  401 (443)
T PRK13168        358 FTDQPWALGGFDKVLLDPPRA--GA------------AEVMQAL-AKLGPKRIVYVSCN  401 (443)
T ss_pred             hhhhhhhcCCCCEEEECcCCc--Ch------------HHHHHHH-HhcCCCeEEEEEeC
Confidence            111 13346799999988531  11            1122222 23688888777653

>KOG3191|consensus

Probab=98.52  E-value=2.7e-06  Score=66.73  Aligned_cols=128  Identities=16%  Similarity=0.189  Sum_probs=87.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CCC--CCeEEecCCCCChhHHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PID--GAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~~--~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ...+|++|||+|..+..|++..+        +.....+.|++|.+        ...  ++..+ +.|+.+         -
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~--------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V-~tdl~~---------~  105 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIG--------PQALYLATDINPEALEATLETARCNRVHIDVV-RTDLLS---------G  105 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcC--------CCceEEEecCCHHHHHHHHHHHHhcCCcccee-ehhHHh---------h
Confidence            57899999999999999999887        77889999999821        112  34555 666444         2


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcc-cHHH---------HHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREM-DHDL---------ITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY  201 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~-d~~~---------~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F  201 (229)
                      +..+++|+++-|.+.-++..... ++..         -.+...+.+...-.+|.|.|.|.+........+++++.++..=
T Consensus       106 l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g  185 (209)
T KOG3191|consen  106 LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKG  185 (209)
T ss_pred             hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcc
Confidence            34589999999886432222111 1111         1223446677777889999999998777777888999887763


Q ss_pred             CeeEEE
Q psy1489         202 SQVKIL  207 (229)
Q Consensus       202 ~~v~~~  207 (229)
                      ..+++.
T Consensus       186 ~~~~~~  191 (209)
T KOG3191|consen  186 YGVRIA  191 (209)
T ss_pred             cceeEE
Confidence            334333

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.49  E-value=4.6e-07  Score=74.37  Aligned_cols=63  Identities=22%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++..           ..|+|+|+++ |.          .. ..+.+. .+|+..      
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~-----------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~------  123 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG-----------AKVVASDISPQMVEEARERAPEAGLAGNITFE-VGDLES------  123 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEE-EcCchh------
Confidence            467899999999999999988753           4799999986 21          11 246677 777322      


Q ss_pred             HHHHhCCCCccEEEeCCC
Q psy1489         128 LVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~  145 (229)
                           .++.||+|++...
T Consensus       124 -----~~~~fD~v~~~~~  136 (230)
T PRK07580        124 -----LLGRFDTVVCLDV  136 (230)
T ss_pred             -----ccCCcCEEEEcch
Confidence                 2467999998543

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.48  E-value=2.7e-07  Score=80.13  Aligned_cols=114  Identities=21%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---------------CCCeEEecCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---------------DGAVVLSKCDF  119 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---------------~~~~~~~~~D~  119 (229)
                      ++.+|||||||-|+-..--...          .-.+++|+|++..  .    ..               -.+.++ .+|.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~----------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~-~~D~  130 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA----------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFI-AADC  130 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEE-ESTT
T ss_pred             CCCeEEEecCCCchhHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhhee-cccc
Confidence            7899999999999965443332          3469999999851  0    00               134567 7887


Q ss_pred             CChhHHHHHHHHhCCC--CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489         120 TQPDIQDRLVTILKDD--KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI  197 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~--~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l  197 (229)
                      ....    +...+...  .||+|-|-.+...       .+.+.+..+..|..+...|+|||.||..+..   ...+.+.|
T Consensus       131 f~~~----l~~~~~~~~~~FDvVScQFalHY-------~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d---~~~i~~~l  196 (331)
T PF03291_consen  131 FSES----LREKLPPRSRKFDVVSCQFALHY-------AFESEEKARQFLKNVSSLLKPGGYFIGTTPD---SDEIVKRL  196 (331)
T ss_dssp             CCSH----HHCTSSSTTS-EEEEEEES-GGG-------GGSSHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCH
T ss_pred             ccch----hhhhccccCCCcceeehHHHHHH-------hcCCHHHHHHHHHHHHHhcCCCCEEEEEecC---HHHHHHHH
Confidence            7643    34444444  8999999665311       1233345667899999999999999986654   45555555


Q ss_pred             Hh
Q psy1489         198 TR  199 (229)
Q Consensus       198 ~~  199 (229)
                      +.
T Consensus       197 ~~  198 (331)
T PF03291_consen  197 RE  198 (331)
T ss_dssp             HC
T ss_pred             Hh
Confidence            44

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.48  E-value=5.1e-07  Score=72.41  Aligned_cols=100  Identities=13%  Similarity=-0.016  Sum_probs=62.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|.+||||+||+|.++..++.+.          ..+|++||.++-           .... +++++ .+|+.+     .+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srg----------a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~-~~D~~~-----~l  112 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRG----------AKVAFLEEDDRKANQTLKENLALLKSGEQAEVV-RNSALR-----AL  112 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEE-ehhHHH-----HH
Confidence            57899999999999999998873          358999999961           0122 35666 776533     12


Q ss_pred             HHHhCC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         129 VTILKD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~~~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ...... ..||+|+.|++...    .. .    ..+...+.. ..+|+++|.++++...
T Consensus       113 ~~~~~~~~~~dvv~~DPPy~~----~~-~----~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       113 KFLAKKPTFDNVIYLDPPFFN----GA-L----QALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHhhccCCCceEEEECcCCCC----Cc-H----HHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            222222 34899999887521    11 1    111122222 3578999988887654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG2198|consensus

Probab=98.46  E-value=2.3e-06  Score=73.98  Aligned_cols=142  Identities=22%  Similarity=0.266  Sum_probs=82.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------C--CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------Y--PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~--~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++||++|||+|++||+-+..+.+.+-.     ....|.|++.|.++.         .  +.+...+. ..|+..-.... 
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~-----~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~-~~~~~~~p~~~-  225 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHK-----DPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVT-NHDASLFPNIY-  225 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhc-----CCCCCeeEecccCHHHHHHHHHHHhccCCcceeee-cccceeccccc-
Confidence            578999999999999999888876521     112469999999851         1  12233333 33332211000 


Q ss_pred             HHH--HhCCCCccEEEeCCCCCCCCC--CcccHH----------HHHHHHHHHHHHHHHcccCCCEEEEeecCCC---Ch
Q psy1489         128 LVT--ILKDDKLDVVLSDMAPNATGM--REMDHD----------LITQLAIAVIRFAVTYSKPGADCLIKIWDGR---NR  190 (229)
Q Consensus       128 i~~--~~~~~~~D~V~sd~~~~~~g~--~~~d~~----------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~---~~  190 (229)
                      +..  ......||-|++|.++..-|.  ++.+.+          ....++..+|....++||+||++|-.+-+..   +.
T Consensus       226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE  305 (375)
T KOG2198|consen  226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE  305 (375)
T ss_pred             cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence            000  012347999999997532221  111111          1123556889999999999999987664432   22


Q ss_pred             HHHHHHHHhhCCeeEEE
Q psy1489         191 PQLEESITRFYSQVKIL  207 (229)
Q Consensus       191 ~~~~~~l~~~F~~v~~~  207 (229)
                      ..+-+.|+.....+.++
T Consensus       306 aVV~~~L~~~~~~~~lv  322 (375)
T KOG2198|consen  306 AVVQEALQKVGGAVELV  322 (375)
T ss_pred             HHHHHHHHHhcCcccce
Confidence            22335556665444443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.45  E-value=9.4e-07  Score=76.27  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=29.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      ++.+|||+|||+|.++..++++ +          .+|+|+|+++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~-g----------~~V~gvD~S~  176 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE-G----------AIVSASDISA  176 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-C----------CEEEEEECCH
Confidence            5789999999999999999875 2          5899999997

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.45  E-value=2.8e-06  Score=73.37  Aligned_cols=149  Identities=13%  Similarity=0.078  Sum_probs=85.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------C-CCC-CCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------Y-PID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~-~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      ++.+|||||||+|.+...++.+.         +..+++|+|+++.           . .+. .+.+..+.|..+      
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~---------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~------  178 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE---------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA------  178 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC---------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh------
Confidence            45799999999999988888765         4579999999972           1 122 233320222221      


Q ss_pred             HHHH--hCCCCccEEEeCCCCCCCCCCcc----cHHHH--------------------------HHHHHHHHHHHHHccc
Q psy1489         128 LVTI--LKDDKLDVVLSDMAPNATGMREM----DHDLI--------------------------TQLAIAVIRFAVTYSK  175 (229)
Q Consensus       128 i~~~--~~~~~~D~V~sd~~~~~~g~~~~----d~~~~--------------------------~~~~~~~l~~~~~~Lk  175 (229)
                      +...  .+++.||+|+||++...+.....    +....                          ...+...+.+...+++
T Consensus       179 i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~  258 (321)
T PRK11727        179 IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAK  258 (321)
T ss_pred             hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHh
Confidence            1111  13568999999987543322100    00000                          0112245555566666


Q ss_pred             CCCEEEEeecCCCChHHHHHHHHhh-CCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         176 PGADCLIKIWDGRNRPQLEESITRF-YSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       176 pgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      ..|+|.+-+-...+...+++.|+.. ...+++.   ....++.-..+||=.|.
T Consensus       259 ~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~---e~~qG~~~~~~vaWsf~  308 (321)
T PRK11727        259 QVLWFTSLVSKKENLPPLYRALKKVGAVEVKTI---EMAQGQKQSRFIAWTFL  308 (321)
T ss_pred             hCcEEEEEeeccCCHHHHHHHHHHcCCceEEEE---EEeCCCeeeEEEEeecC
Confidence            6666665455566788888888775 3344443   33344555566765553

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.43  E-value=1.3e-07  Score=76.66  Aligned_cols=98  Identities=16%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ...+||++||+.|.-+..+++.++        ++++|+.+|+++. .          .+ ..++++ .+|..+  ....+
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~--------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~-~gda~~--~l~~l  113 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALP--------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVI-EGDALE--VLPEL  113 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTST--------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE-ES-HHH--HHHHH
T ss_pred             CCceEEEeccccccHHHHHHHhhc--------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE-EeccHh--hHHHH
Confidence            457999999999999999998775        5689999999971 1          12 256777 776554  22222


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+.++||+|+.|+..        +.      ....+..+.++|+|||.+++.
T Consensus       114 ~~~~~~~~fD~VFiDa~K--------~~------y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  114 ANDGEEGQFDFVFIDADK--------RN------YLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HHTTTTTSEEEEEEESTG--------GG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhccCCCceeEEEEcccc--------cc------hhhHHHHHhhhccCCeEEEEc
Confidence            221223579999999853        11      224566677899999999875

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1500|consensus

Probab=98.40  E-value=1.2e-06  Score=74.76  Aligned_cols=92  Identities=23%  Similarity=0.291  Sum_probs=64.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----------CCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+..|||+|||+|.++..+++.          ++.+|++|+.+.|..           ..++.++ .|-+.+.+      
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA----------GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI-~GKiEdie------  239 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA----------GAKKVYAVEASEMAQYARKLVASNNLADRITVI-PGKIEDIE------  239 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh----------CcceEEEEehhHHHHHHHHHHhcCCccceEEEc-cCcccccc------
Confidence            4789999999999999988875          457999999998742           1346677 77776632      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                        + .+++|+|+|.++    |.--. .    +...+..-.|.++|+|.|.+.
T Consensus       240 --L-PEk~DviISEPM----G~mL~-N----ERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  240 --L-PEKVDVIISEPM----GYMLV-N----ERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             --C-chhccEEEeccc----hhhhh-h----HHHHHHHHHHHhhcCCCCccc
Confidence              3 468999999543    21111 1    222333445789999999875

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.40  E-value=5.4e-07  Score=74.06  Aligned_cols=101  Identities=10%  Similarity=-0.048  Sum_probs=69.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC---------------------CCCCeEEec
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP---------------------IDGAVVLSK  116 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~---------------------~~~~~~~~~  116 (229)
                      .++.+||+.|||.|.-+..|+.+ |          ..|+|+|+|+.  ..                     -..+++. +
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~-G----------~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~-~  109 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK-G----------VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY-V  109 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC-C----------CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE-E
Confidence            45789999999999999999876 3          58999999962  10                     0146777 8


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      +|+.+.....     -..+.||+|+--++...         ...++..+....+.++|+|||.+++..+.
T Consensus       110 gD~f~l~~~~-----~~~~~fD~VyDra~~~A---------lpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        110 ADIFNLPKIA-----NNLPVFDIWYDRGAYIA---------LPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             ccCcCCCccc-----cccCCcCeeeeehhHhc---------CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            9988732100     01247999886544311         11133456677789999999998876654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=1e-06  Score=69.57  Aligned_cols=66  Identities=27%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C-----CC----CCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y-----PI----DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~-----~~----~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|.+|+|||||||.++..++..          +..+|+|||+.+- .     +.    -++.++ .+|+.+.        
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~l----------Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~-~~dv~~~--------  105 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALL----------GASRVLAVDIDPEALEIARANAEELLGDVEFV-VADVSDF--------  105 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhc----------CCcEEEEEecCHHHHHHHHHHHHhhCCceEEE-Ecchhhc--------
Confidence            5789999999999999887654          3579999999971 1     11    257888 8888772        


Q ss_pred             HhCCCCccEEEeCCCCCC
Q psy1489         131 ILKDDKLDVVLSDMAPNA  148 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~  148 (229)
                         ...+|.|+.|+++..
T Consensus       106 ---~~~~dtvimNPPFG~  120 (198)
T COG2263         106 ---RGKFDTVIMNPPFGS  120 (198)
T ss_pred             ---CCccceEEECCCCcc
Confidence               467999999988743

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.37  E-value=1.1e-06  Score=72.30  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=74.4

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ..+||||||.|.+...+|++.         |+..++|||+..  +         ..+.|+.++ +.|....     +..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n---------P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~-~~DA~~~-----l~~~  114 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN---------PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLL-CGDAVEV-----LDYL  114 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC---------CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEE-cCCHHHH-----HHhc
Confidence            489999999999999999986         788999999985  1         234578888 8876652     3344


Q ss_pred             hCCCCccEEEeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         132 LKDDKLDVVLSDMAP-NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .++++.|-|..+.+- ....    .|....-.....+....+.|+|||.+.+++..
T Consensus       115 ~~~~sl~~I~i~FPDPWpKk----RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         115 IPDGSLDKIYINFPDPWPKK----RHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             CCCCCeeEEEEECCCCCCCc----cccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            455599999987652 1111    12111112346788899999999999887653

>KOG3045|consensus

Probab=98.37  E-value=3.3e-06  Score=69.78  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      +....|.|+|||-+-++.    .          ....|...|+-+    .+-+++ .+|+.+..        ++++++|+
T Consensus       179 ~~~~vIaD~GCGEakiA~----~----------~~~kV~SfDL~a----~~~~V~-~cDm~~vP--------l~d~svDv  231 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----S----------ERHKVHSFDLVA----VNERVI-ACDMRNVP--------LEDESVDV  231 (325)
T ss_pred             cCceEEEecccchhhhhh----c----------cccceeeeeeec----CCCcee-eccccCCc--------CccCcccE
Confidence            345789999999997765    1          235899999866    233455 78888843        67899999


Q ss_pred             EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhh
Q psy1489         140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRF  200 (229)
Q Consensus       140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~  200 (229)
                      ++.-.+.  .|          ......+.+|.|+|++||.+.+..-..  .+...|...+..+
T Consensus       232 aV~CLSL--Mg----------tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~l  282 (325)
T KOG3045|consen  232 AVFCLSL--MG----------TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKL  282 (325)
T ss_pred             EEeeHhh--hc----------ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHc
Confidence            9973332  12          123567899999999999998754332  3444455555443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.36  E-value=6.3e-07  Score=74.36  Aligned_cols=96  Identities=22%  Similarity=0.255  Sum_probs=70.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +.+..+|||||+|.|.++..+++..         |+.+++..|+-...    ..++++++ .+|+.++         ++.
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dlp~v~~~~~~~~rv~~~-~gd~f~~---------~P~  158 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAY---------PNLRATVFDLPEVIEQAKEADRVEFV-PGDFFDP---------LPV  158 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHS---------TTSEEEEEE-HHHHCCHHHTTTEEEE-ES-TTTC---------CSS
T ss_pred             ccCccEEEeccCcchHHHHHHHHHC---------CCCcceeeccHhhhhccccccccccc-cccHHhh---------hcc
Confidence            4566799999999999999999887         78899999984321    24678999 9998853         444


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC--CEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG--ADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg--G~~v~~~  184 (229)
                        +|+++..-..     +++.    -+.+..+|+.+.+.|+||  |++++..
T Consensus       159 --~D~~~l~~vL-----h~~~----d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  159 --ADVYLLRHVL-----HDWS----DEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             --ESEEEEESSG-----GGS-----HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             --ccceeeehhh-----hhcc----hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence              9999984322     2222    255778999999999999  9988754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG1596|consensus

Probab=98.35  E-value=8.7e-07  Score=72.37  Aligned_cols=99  Identities=28%  Similarity=0.339  Sum_probs=75.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++||.+||=||++.|.--.+++..++        |.+.|++|+.++-         ...+|+.-+ ..|.+.+.-..++ 
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVG--------peG~VYAVEfs~rsGRdL~nmAkkRtNiiPI-iEDArhP~KYRml-  223 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVG--------PEGCVYAVEFSHRSGRDLINMAKKRTNIIPI-IEDARHPAKYRML-  223 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccC--------CCceEEEEEecccchHHHHHHhhccCCceee-eccCCCchheeee-
Confidence            68999999999999999999999988        8999999999862         134577777 7888876433222 


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          -..+|+|++|.++       .|..      ..+.-.|..+||+||.|++.+
T Consensus       224 ----VgmVDvIFaDvaq-------pdq~------RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  224 ----VGMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             ----eeeEEEEeccCCC-------chhh------hhhhhhhhhhhccCCeEEEEE
Confidence                2378999999864       1222      233345888999999999876

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.34  E-value=2.7e-06  Score=65.94  Aligned_cols=107  Identities=16%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC------CCCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP------IYPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~------~~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ...|.-||++|.|+|.++..++.+.-        +...+++++.++      +...+++.++ .+|..+.++.  + ...
T Consensus        46 pesglpVlElGPGTGV~TkaIL~~gv--------~~~~L~~iE~~~dF~~~L~~~~p~~~ii-~gda~~l~~~--l-~e~  113 (194)
T COG3963          46 PESGLPVLELGPGTGVITKAILSRGV--------RPESLTAIEYSPDFVCHLNQLYPGVNII-NGDAFDLRTT--L-GEH  113 (194)
T ss_pred             cccCCeeEEEcCCccHhHHHHHhcCC--------CccceEEEEeCHHHHHHHHHhCCCcccc-ccchhhHHHH--H-hhc
Confidence            35678999999999999999887643        556899999997      2345778888 9998875532  1 224


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .+..||.|+|..+..     +.    .++...++|+.+...|.+||-++.-.+.
T Consensus       114 ~gq~~D~viS~lPll-----~~----P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         114 KGQFFDSVISGLPLL-----NF----PMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CCCeeeeEEeccccc-----cC----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            567899999965431     11    1223346788889999999999875554

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.34  E-value=1.1e-06  Score=72.88  Aligned_cols=91  Identities=22%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      ...++||||+|-|+.+..++....           +|++.|.|+ |.   .-.+..++...|+.+           .+.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~-----------~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~-----------~~~~  151 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK-----------EVYATEASPPMRWRLSKKGFTVLDIDDWQQ-----------TDFK  151 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc-----------eEEeecCCHHHHHHHHhCCCeEEehhhhhc-----------cCCc
Confidence            357899999999999999998763           899999998 53   124555551222221           2468


Q ss_pred             ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       137 ~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ||+|.|--           -......+...|+.+.+.|+|+|.+++.+
T Consensus       152 fDvIscLN-----------vLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  152 FDVISCLN-----------VLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             eEEEeehh-----------hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            99999822           22222345578888999999999998765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02823 spermine synthase

Probab=98.33  E-value=8.9e-06  Score=70.80  Aligned_cols=126  Identities=14%  Similarity=0.129  Sum_probs=80.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C-------CCCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P-------IDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~-------~~~~~~~~~~D~~~~~~~  125 (229)
                      ...+||.||+|.|+.+..+++..         +..+|+.||+++ +.       +       -++++++ .+|..+    
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~---------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~-~~Da~~----  168 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK---------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI-INDARA----  168 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE-EChhHH----
Confidence            45799999999999988877653         346899999997 10       1       2456666 666544    


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHcccCCCEEEEeecCC------CChHHHHHHHH
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYSKPGADCLIKIWDG------RNRPQLEESIT  198 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~~v~~~~~~------~~~~~~~~~l~  198 (229)
                       .+.  ..+++||+|+.|......+.. ..++    .....++ .+.+.|+|||.+++..-..      .....+...++
T Consensus       169 -~L~--~~~~~yDvIi~D~~dp~~~~~-~~~L----yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~  240 (336)
T PLN02823        169 -ELE--KRDEKFDVIIGDLADPVEGGP-CYQL----YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLR  240 (336)
T ss_pred             -HHh--hCCCCccEEEecCCCccccCc-chhh----ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHH
Confidence             122  125689999999642111000 0011    1124565 6889999999998754221      11355677788


Q ss_pred             hhCCeeEEEc
Q psy1489         199 RFYSQVKILK  208 (229)
Q Consensus       199 ~~F~~v~~~k  208 (229)
                      +.|..|..+.
T Consensus       241 ~vF~~v~~y~  250 (336)
T PLN02823        241 QVFKYVVPYT  250 (336)
T ss_pred             HhCCCEEEEE
Confidence            8898887765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.33  E-value=3.4e-06  Score=66.65  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=64.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------------CCCCCeEEecCCCCChhHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------------PIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------------~~~~~~~~~~~D~~~~~~~  125 (229)
                      ..++.+||+||||+|..+..++...         +..+|+..|..+..             ....+.+. .-|+.+... 
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~---------~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~-~L~Wg~~~~-  111 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF---------GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVR-PLDWGDELD-  111 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT----------T-SEEEEEE-S-HHHHHHHHHHTT--------EEE-E--TTS-HH-
T ss_pred             hcCCceEEEECCccchhHHHHHhcc---------CCceEEEeccchhhHHHHHHHHhccccccccccCc-EEEecCccc-
Confidence            3467899999999999888888763         34699999988621             11345565 667766321 


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-CCChHHHHHHHHh
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-GRNRPQLEESITR  199 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-~~~~~~~~~~l~~  199 (229)
                         ...+....||+|++.-..   ..        .+.....+..+.++|+|+|.+++..-. ......|++.+++
T Consensus       112 ---~~~~~~~~~D~IlasDv~---Y~--------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k  172 (173)
T PF10294_consen  112 ---SDLLEPHSFDVILASDVL---YD--------EELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK  172 (173)
T ss_dssp             ---HHHHS-SSBSEEEEES-----S---------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred             ---ccccccccCCEEEEeccc---ch--------HHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence               223456789999963221   11        123345667788899999987665432 3345667776654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.32  E-value=6.2e-06  Score=74.29  Aligned_cols=70  Identities=20%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +          ..+.+++++ .+|+.+.     
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~-----------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~-~~d~~~~-----  352 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA-----------KSVVGIEVVPESVEKAQQNAELNGIANVEFL-AGTLETV-----  352 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC-----------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEE-eCCHHHH-----
Confidence            3467899999999999999998763           4899999996 2          124578888 8887542     


Q ss_pred             HHHH-hCCCCccEEEeCCC
Q psy1489         128 LVTI-LKDDKLDVVLSDMA  145 (229)
Q Consensus       128 i~~~-~~~~~~D~V~sd~~  145 (229)
                      +... ..+..||+|+.|++
T Consensus       353 l~~~~~~~~~~D~vi~dPP  371 (431)
T TIGR00479       353 LPKQPWAGQIPDVLLLDPP  371 (431)
T ss_pred             HHHHHhcCCCCCEEEECcC
Confidence            1111 23457999999886

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=3.2e-05  Score=61.78  Aligned_cols=97  Identities=27%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C-------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I-------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~-------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|.+||=||+.+|.-..+++...         +.|.++||+.++  |       ...+|+--+ .+|.+.++....+.
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv---------~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PI-L~DA~~P~~Y~~~V  143 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIV---------GEGRIYAVEFSPRPMRELLDVAEKRPNIIPI-LEDARKPEKYRHLV  143 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhcc---------CCCcEEEEEecchhHHHHHHHHHhCCCceee-ecccCCcHHhhhhc
Confidence            5789999999999999999999987         568999999997  2       134677778 89998876554333


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                           +.+|+|+.|.+-       .+      ..+-+...+..+|++||.+++.
T Consensus       144 -----e~VDviy~DVAQ-------p~------Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         144 -----EKVDVIYQDVAQ-------PN------QAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             -----ccccEEEEecCC-------ch------HHHHHHHHHHHhcccCCeEEEE
Confidence                 369999998752       11      1345667899999999966543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.32  E-value=3.2e-06  Score=73.06  Aligned_cols=66  Identities=15%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..+++..           .+|+|+|+++ +          ..+.+++++ ++|+.+.      .
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-----------~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~-~~D~~~~------~  234 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-----------MQLTGIEISAEAIACAKQSAAELGLTNVQFQ-ALDSTQF------A  234 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-EcCHHHH------H
Confidence            46899999999999999998742           5899999996 2          123467888 8886542      1


Q ss_pred             HHhCCCCccEEEeCCC
Q psy1489         130 TILKDDKLDVVLSDMA  145 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~  145 (229)
                      .. ..+.||+|++|++
T Consensus       235 ~~-~~~~~D~Vv~dPP  249 (315)
T PRK03522        235 TA-QGEVPDLVLVNPP  249 (315)
T ss_pred             Hh-cCCCCeEEEECCC
Confidence            11 2347999999965

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.31  E-value=1.5e-06  Score=79.84  Aligned_cols=106  Identities=11%  Similarity=0.070  Sum_probs=75.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+..+||+|||.|.+...+|...         |+..++|+|+..-           ..+.|+.++ .+|+.      .+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~---------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~-~~~~~------~~~  410 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN---------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLF-PNNLD------LIL  410 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEE-cCCHH------HHH
Confidence            46789999999999999999886         7889999999851           235577777 66532      244


Q ss_pred             HHhCCCCccEEEeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         130 TILKDDKLDVVLSDMAP-NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ..++++++|.|+.+.+- .+..-    |....-.....+....++|+|||.+.+++..
T Consensus       411 ~~~~~~sv~~i~i~FPDPWpKkr----h~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        411 NDLPNNSLDGIYILFPDPWIKNK----QKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             HhcCcccccEEEEECCCCCCCCC----CccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            55788899999987752 21111    1111112346788899999999999887654

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.28  E-value=2.6e-06  Score=72.73  Aligned_cols=72  Identities=22%  Similarity=0.441  Sum_probs=54.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.+|..+||++||.|+.+..+++.++        +.++|+|+|.++ +.        ...++.++ ++|+.+.      .
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~--------~~g~VigiD~D~~al~~ak~~L~~~~ri~~i-~~~f~~l------~   81 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLG--------PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLV-HGNFSNL------K   81 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCC--------CCCEEEEEcCCHHHHHHHHHhhccCCcEEEE-eCCHHHH------H
Confidence            46788999999999999999999874        568999999997 21        12367888 8887773      2


Q ss_pred             HHhCC--CCccEEEeCCC
Q psy1489         130 TILKD--DKLDVVLSDMA  145 (229)
Q Consensus       130 ~~~~~--~~~D~V~sd~~  145 (229)
                      ..+++  ..+|.|+.|..
T Consensus        82 ~~l~~~~~~vDgIl~DLG   99 (296)
T PRK00050         82 EVLAEGLGKVDGILLDLG   99 (296)
T ss_pred             HHHHcCCCccCEEEECCC
Confidence            22322  27999999874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.25  E-value=1.4e-06  Score=71.14  Aligned_cols=95  Identities=18%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEec-CCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSK-CDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~-~D~~~~~~~~  126 (229)
                      ....+||++|++.|.-+..+|.-++        .+++++.+|+++ +.          .+. .+..+ . +|..+     
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~--------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~-~~gdal~-----  123 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALP--------DDGRLTTIERDEERAEIARENLAEAGVDDRIELL-LGGDALD-----  123 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCC--------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE-ecCcHHH-----
Confidence            4578999999999999999998874        378999999997 21          122 24555 4 34333     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.. ...++||+|+.|....              .....+..+.++|+|||.+++.
T Consensus       124 ~l~~-~~~~~fDliFIDadK~--------------~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         124 VLSR-LLDGSFDLVFIDADKA--------------DYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             HHHh-ccCCCccEEEEeCChh--------------hCHHHHHHHHHHhCCCcEEEEe
Confidence            2333 3468999999988541              1235677788999999999874

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.24  E-value=2.3e-06  Score=71.91  Aligned_cols=67  Identities=18%  Similarity=0.239  Sum_probs=51.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..++++.           .+|+|+|+++ |.        ...++.++ .+|+.+..      
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~-----------~~v~~vEid~~~~~~l~~~~~~~~~v~ii-~~D~~~~~------   88 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRA-----------KKVYAIELDPRLAEFLRDDEIAAGNVEII-EGDALKVD------   88 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhC-----------CEEEEEECCHHHHHHHHHHhccCCCEEEE-EeccccCC------
Confidence            3568999999999999999999873           5899999996 21        13468888 89987632      


Q ss_pred             HHhCCCCccEEEeCCCCC
Q psy1489         130 TILKDDKLDVVLSDMAPN  147 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~  147 (229)
                          -..||.|++|.+..
T Consensus        89 ----~~~~d~Vv~NlPy~  102 (258)
T PRK14896         89 ----LPEFNKVVSNLPYQ  102 (258)
T ss_pred             ----chhceEEEEcCCcc
Confidence                23479999988753

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.23  E-value=5.1e-07  Score=72.02  Aligned_cols=100  Identities=19%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---------CCC-CCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---------PID-GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---------~~~-~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|.+||||.||+|.++..++.+          ++.+|+.||.++.  .         ... .+.++ .+|...     .+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSR----------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~-~~d~~~-----~l  105 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSR----------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI-KGDAFK-----FL  105 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE-ESSHHH-----HH
T ss_pred             CCCeEEEcCCccCccHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeee-ccCHHH-----HH
Confidence            6899999999999999998877          3579999999861  0         112 35566 666433     12


Q ss_pred             HHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeecCC
Q psy1489         129 VTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIWDG  187 (229)
Q Consensus       129 ~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~~~  187 (229)
                      ... ....+||+|+.|++...      +..     ...++..+  ..+|+++|.++++....
T Consensus       106 ~~~~~~~~~fDiIflDPPY~~------~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  106 LKLAKKGEKFDIIFLDPPYAK------GLY-----YEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHCTS-EEEEEE--STTS------CHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HhhcccCCCceEEEECCCccc------chH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            221 24678999999986421      111     12233333  37899999999987654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.22  E-value=5.4e-06  Score=69.12  Aligned_cols=95  Identities=14%  Similarity=0.099  Sum_probs=67.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ...+||++|++.|.-+..++.-++        +.++|+.+|.++. .          . ...++++ .+|..+     .+
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~--------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~-~G~a~e-----~L  144 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALP--------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFR-EGPALP-----VL  144 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE-eccHHH-----HH
Confidence            457999999999999999998765        6789999999871 0          1 1357777 777544     23


Q ss_pred             HHHhC----CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILK----DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~----~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .....    .++||+|+.|+..          .    .....+..+.++|+|||.+++.
T Consensus       145 ~~l~~~~~~~~~fD~iFiDadK----------~----~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDADK----------D----NYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HHHHhccccCCcccEEEecCCH----------H----HhHHHHHHHHHhcCCCeEEEEc
Confidence            33222    2589999998843          1    1234556678899999998864

>KOG2899|consensus

Probab=98.20  E-value=2.9e-06  Score=69.47  Aligned_cols=34  Identities=26%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      +..+||+||..|..++.+++..+         ...|+|+||.+
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~---------~r~iLGvDID~   92 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFG---------PRRILGVDIDP   92 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhc---------cceeeEeeccH
Confidence            57899999999999999999885         34799999985

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.19  E-value=1.6e-05  Score=63.13  Aligned_cols=97  Identities=21%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE---------EEEEeCCC-CC----------CCC-CCeEEecC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL---------VLSVDKLP-IY----------PID-GAVVLSKC  117 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~---------v~gvD~~~-~~----------~~~-~~~~~~~~  117 (229)
                      .+++..|||-.||+|.+.+.++....         ...         ++|+|+++ +.          .+. .+.+. +.
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~---------~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~-~~   95 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGA---------NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI-QW   95 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHT---------TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE-E-
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhh---------CcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE-ec
Confidence            46789999999999999988776642         233         89999996 11          122 25666 78


Q ss_pred             CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC
Q psy1489         118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP  176 (229)
Q Consensus       118 D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp  176 (229)
                      |+++..        +.++.+|.|++|++.   |.+.........+...+++++.++|++
T Consensus        96 D~~~l~--------~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   96 DARELP--------LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             -GGGGG--------GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             chhhcc--------cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            887732        346789999999975   555554444556677889999999999

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.18  E-value=1.7e-06  Score=73.98  Aligned_cols=67  Identities=19%  Similarity=0.365  Sum_probs=51.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++++|||+|||+|.++..+++..           .+|+|+|+++ |.          . ..+++++ .+|+.+.+   
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-----------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii-~~Dal~~~---   98 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLA-----------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI-EGDALKTE---   98 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE-ECCHhhhc---
Confidence            4578999999999999999998763           5899999996 21          1 3468888 89876622   


Q ss_pred             HHHHHhCCCCccEEEeCCCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPN  147 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~  147 (229)
                             ...||.|++|.+.+
T Consensus        99 -------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         99 -------FPYFDVCVANVPYQ  112 (294)
T ss_pred             -------ccccCEEEecCCcc
Confidence                   23689999998754

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.18  E-value=1.5e-06  Score=73.67  Aligned_cols=68  Identities=18%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC--CCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI--DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~--~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.++.+|||+|||+|.++..++++.           .+|+|+|+++ |.     ..  ++++++ .+|+.+.+..     
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~avE~d~~~~~~~~~~~~~~~v~~i-~~D~~~~~~~-----  102 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERA-----------AKVTAVEIDRDLAPILAETFAEDNLTII-EGDALKVDLS-----  102 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHhhccCceEEE-EChhhcCCHH-----
Confidence            4578899999999999999999873           3899999997 21     11  468888 8998874311     


Q ss_pred             HhCCCCccEEEeCCCC
Q psy1489         131 ILKDDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~  146 (229)
                         +-.+|.|++|.+.
T Consensus       103 ---~~~~~~vv~NlPY  115 (272)
T PRK00274        103 ---ELQPLKVVANLPY  115 (272)
T ss_pred             ---HcCcceEEEeCCc
Confidence               1116899998764

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.17  E-value=4.7e-07  Score=81.61  Aligned_cols=93  Identities=27%  Similarity=0.358  Sum_probs=60.1

Q ss_pred             CCeeEeecCCCCchHHHHHHH---HhccCCCCCCCCcEEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKL---VNSHGYDSKQPKGLVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~---~~~~~~~~~~~~~~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +..|||+|||+|-++..+++.   .+        .+.+|+||+-+++.           .. ..++++ ++|+++..   
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~--------~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi-~~d~r~v~---  254 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAG--------GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVI-HGDMREVE---  254 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHC--------CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEE-ES-TTTSC---
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhC--------CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEE-eCcccCCC---
Confidence            578999999999998665543   22        34699999999731           11 358899 99998843   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                           + +.++|+|+|-..    |. ..++    ++..+.|..+.++|||||.++
T Consensus       255 -----l-pekvDIIVSElL----Gs-fg~n----El~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  255 -----L-PEKVDIIVSELL----GS-FGDN----ELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -----H-SS-EEEEEE-------BT-TBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred             -----C-CCceeEEEEecc----CC-cccc----ccCHHHHHHHHhhcCCCCEEe
Confidence                 2 458999999543    21 1122    122345777889999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.12  E-value=1e-05  Score=67.78  Aligned_cols=66  Identities=20%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ..++.+|||+|||+|.++..++++.           ..|+++|+++ +.        ...++.++ .+|+.+....    
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~-~~D~~~~~~~----   90 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRA-----------KKVTAIEIDPRLAEILRKLLSLYERLEVI-EGDALKVDLP----   90 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHhCcCCcEEEE-ECchhcCChh----
Confidence            3467899999999999999999874           3699999987 21        12467788 8888774311    


Q ss_pred             HHhCCCCcc---EEEeCCCC
Q psy1489         130 TILKDDKLD---VVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D---~V~sd~~~  146 (229)
                            .+|   +|+++.+.
T Consensus        91 ------~~d~~~~vvsNlPy  104 (253)
T TIGR00755        91 ------DFPKQLKVVSNLPY  104 (253)
T ss_pred             ------HcCCcceEEEcCCh
Confidence                  244   99998754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.04  E-value=1.3e-05  Score=65.64  Aligned_cols=121  Identities=18%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C------C-------C--------CCCeEEe
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y------P-------I--------DGAVVLS  115 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~------~-------~--------~~~~~~~  115 (229)
                      ..++.+||+.|||.|.-...|+++ |          ..|+|+|+++.  .      .       .        .++++. 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~-G----------~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~-  102 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ-G----------HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY-  102 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT-T----------EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE-
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC-C----------CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE-
Confidence            456789999999999999999986 3          59999999962  0      1       1        135677 


Q ss_pred             cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE--EeecC-----CC
Q psy1489         116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL--IKIWD-----GR  188 (229)
Q Consensus       116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v--~~~~~-----~~  188 (229)
                      ++|+.+...       -..++||+|+--.+..+  ++.       ++..+-.+.+.++|+|||.++  +-.+.     ++
T Consensus       103 ~gDfF~l~~-------~~~g~fD~iyDr~~l~A--lpp-------~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GP  166 (218)
T PF05724_consen  103 CGDFFELPP-------EDVGKFDLIYDRTFLCA--LPP-------EMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGP  166 (218)
T ss_dssp             ES-TTTGGG-------SCHHSEEEEEECSSTTT--S-G-------GGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSS
T ss_pred             EcccccCCh-------hhcCCceEEEEeccccc--CCH-------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCc
Confidence            899988431       11247999997554321  111       223455667899999999943  32232     11


Q ss_pred             ----ChHHHHHHHHhhCCeeEEE
Q psy1489         189 ----NRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       189 ----~~~~~~~~l~~~F~~v~~~  207 (229)
                          ...++.+.+...|+-..+.
T Consensus       167 Pf~v~~~ev~~l~~~~f~i~~l~  189 (218)
T PF05724_consen  167 PFSVTEEEVRELFGPGFEIEELE  189 (218)
T ss_dssp             S----HHHHHHHHTTTEEEEEEE
T ss_pred             CCCCCHHHHHHHhcCCcEEEEEe
Confidence                2466667776666544443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.04  E-value=2.9e-05  Score=61.73  Aligned_cols=102  Identities=23%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .|.+||||-+|+|+.+..++.+          .+.+++.||.+.-.           . -.++.++ ..|...     .+
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSR----------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~-~~da~~-----~L  106 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSR----------GAARVVFVEKDRKAVKILKENLKALGLEGEARVL-RNDALR-----AL  106 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhC----------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEE-eecHHH-----HH
Confidence            5899999999999999998887          35799999998510           1 1245555 555441     12


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHH-HHHHHHHHcccCCCEEEEeecCC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAI-AVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~-~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ...-..+.||+|+.|++.. .+.        ..... ..+..-..+|+|+|.++++.-..
T Consensus       107 ~~~~~~~~FDlVflDPPy~-~~l--------~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         107 KQLGTREPFDLVFLDPPYA-KGL--------LDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HhcCCCCcccEEEeCCCCc-cch--------hhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            2211122499999999763 111        11011 11122457899999999976544

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.03  E-value=2.3e-05  Score=69.35  Aligned_cols=91  Identities=10%  Similarity=0.065  Sum_probs=59.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||||||+|.++..++..           ...|+|||+++.           ..+.++.++ .+|+.+.     +.
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~-----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~-~~d~~~~-----~~  295 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP-----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFA-ALDSAKF-----AT  295 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEE-ECCHHHH-----HH
Confidence            4679999999999999998854           258999999961           123467788 8886542     11


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      . . ...||+|+.|++-.  |.   +.        .++..+ ..++|++.+++..
T Consensus       296 ~-~-~~~~D~vi~DPPr~--G~---~~--------~~l~~l-~~~~p~~ivyvsc  334 (374)
T TIGR02085       296 A-Q-MSAPELVLVNPPRR--GI---GK--------ELCDYL-SQMAPKFILYSSC  334 (374)
T ss_pred             h-c-CCCCCEEEECCCCC--CC---cH--------HHHHHH-HhcCCCeEEEEEe
Confidence            1 1 24599999997531  21   11        222222 2378988777764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.02  E-value=2.5e-05  Score=69.26  Aligned_cols=90  Identities=22%  Similarity=0.103  Sum_probs=62.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+|||++||+|.++..++...         +..+|+++|+++-           ..+.++++. .+|+...     +..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~---------~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~-~~Da~~~-----l~~  122 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALET---------GVEKVTLNDINPDAVELIKKNLELNGLENEKVF-NKDANAL-----LHE  122 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEE-hhhHHHH-----Hhh
Confidence            4689999999999999998765         3358999999961           123344566 6665331     111


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         ...||+|+.|+.    |..           ...+..+.+.+++||.+.+..
T Consensus       123 ---~~~fD~V~lDP~----Gs~-----------~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        123 ---ERKFDVVDIDPF----GSP-----------APFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             ---cCCCCEEEECCC----CCc-----------HHHHHHHHHHhcCCCEEEEEe
Confidence               457999999863    221           135566777889999998764

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.00  E-value=7.1e-06  Score=66.26  Aligned_cols=88  Identities=25%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC-CeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG-AVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~-~~~~~~~D~~~~~~~~  126 (229)
                      +.+|+.|+|+.||-|.|+..+|+..         ....|+|+|++|.           ..+.+ +..+ .+|..+.    
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~---------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~-~~D~~~~----  164 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG---------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI-NGDAREF----  164 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE-ES-GGG-----
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc---------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE-cCCHHHh----
Confidence            6789999999999999999999853         4468999999972           12333 5677 8887652    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC  180 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~  180 (229)
                           .+...+|.|+++.+..               ....|..+..++++||.+
T Consensus       165 -----~~~~~~drvim~lp~~---------------~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  165 -----LPEGKFDRVIMNLPES---------------SLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             -------TT-EEEEEE--TSS---------------GGGGHHHHHHHEEEEEEE
T ss_pred             -----cCccccCEEEECChHH---------------HHHHHHHHHHHhcCCcEE
Confidence                 2267899999977541               123556688889998875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2940|consensus

Probab=98.00  E-value=9.1e-06  Score=66.17  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=73.4

Q ss_pred             cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC------CCCCCe--EEecCCCCChhHHH
Q psy1489          56 IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY------PIDGAV--VLSKCDFTQPDIQD  126 (229)
Q Consensus        56 ~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~------~~~~~~--~~~~~D~~~~~~~~  126 (229)
                      |..-+....++|+||+-|..+.++..+          .-.+++-+|.|. |.      ..+.+.  .. .+|=..     
T Consensus        67 fD~kk~fp~a~diGcs~G~v~rhl~~e----------~vekli~~DtS~~M~~s~~~~qdp~i~~~~~-v~DEE~-----  130 (325)
T KOG2940|consen   67 FDCKKSFPTAFDIGCSLGAVKRHLRGE----------GVEKLIMMDTSYDMIKSCRDAQDPSIETSYF-VGDEEF-----  130 (325)
T ss_pred             HHHhhhCcceeecccchhhhhHHHHhc----------chhheeeeecchHHHHHhhccCCCceEEEEE-ecchhc-----
Confidence            333344568999999999999988765          235899999986 31      113332  22 343222     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI  197 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l  197 (229)
                       +.  +.++++|+|++.++.     ++.++      +-..+..+...|||.|.|+-.++.+...-++.-.+
T Consensus       131 -Ld--f~ens~DLiisSlsl-----HW~Nd------LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl  187 (325)
T KOG2940|consen  131 -LD--FKENSVDLIISSLSL-----HWTND------LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL  187 (325)
T ss_pred             -cc--ccccchhhhhhhhhh-----hhhcc------CchHHHHHHHhcCCCccchhHHhccccHHHHHHHh
Confidence             11  668899999998754     22211      22345568889999999999888877666655433

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.98  E-value=0.00068  Score=58.65  Aligned_cols=130  Identities=10%  Similarity=0.038  Sum_probs=78.1

Q ss_pred             CccchhhhhhHhh--hhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------C
Q psy1489          40 NYRCRSAFKLLEI--DSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------Y  106 (229)
Q Consensus        40 ~~~~r~~~kl~~i--~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~  106 (229)
                      -|..|.-..+++-  .+....+.++..++|||||.|..+..|++.+...     ....+.+++|+|. +          .
T Consensus        53 YYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~-----~~~~~Y~plDIS~~~L~~a~~~L~~~  127 (319)
T TIGR03439        53 YYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQ-----KKSVDYYALDVSRSELQRTLAELPLG  127 (319)
T ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhc-----CCCceEEEEECCHHHHHHHHHhhhhc
Confidence            4677777666542  1112235677899999999999999888766310     0235789999995 1          1


Q ss_pred             CCCCCeE--EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHH-cccCCCEEEEe
Q psy1489         107 PIDGAVV--LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVT-YSKPGADCLIK  183 (229)
Q Consensus       107 ~~~~~~~--~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~-~LkpgG~~v~~  183 (229)
                      ..+.+.+  + .+|+++.-  ..+..........+++.-++.    +-+.+.    ......|+.+.+ .|+|||.|++-
T Consensus       128 ~~p~l~v~~l-~gdy~~~l--~~l~~~~~~~~~r~~~flGSs----iGNf~~----~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       128 NFSHVRCAGL-LGTYDDGL--AWLKRPENRSRPTTILWLGSS----IGNFSR----PEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             cCCCeEEEEE-EecHHHHH--hhcccccccCCccEEEEeCcc----ccCCCH----HHHHHHHHHHHHhhCCCCCEEEEe
Confidence            2345544  5 77777631  101110012345777764431    223333    224466777888 99999999986


Q ss_pred             ec
Q psy1489         184 IW  185 (229)
Q Consensus       184 ~~  185 (229)
                      +.
T Consensus       197 ~D  198 (319)
T TIGR03439       197 LD  198 (319)
T ss_pred             cC
Confidence            54

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.95  E-value=7.7e-06  Score=63.78  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      +++++ ++|+.+..        +++++||+|++....     +..      .....+++++.++|||||.|++..+..++
T Consensus        27 ~i~~~-~~d~~~lp--------~~~~~fD~v~~~~~l-----~~~------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~   86 (160)
T PLN02232         27 CIEWI-EGDAIDLP--------FDDCEFDAVTMGYGL-----RNV------VDRLRAMKEMYRVLKPGSRVSILDFNKSN   86 (160)
T ss_pred             ceEEE-EechhhCC--------CCCCCeeEEEecchh-----hcC------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence            57888 88877632        557789999996532     211      23457899999999999999987776543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.95  E-value=1.4e-05  Score=64.34  Aligned_cols=107  Identities=15%  Similarity=0.046  Sum_probs=63.5

Q ss_pred             cCCCC-eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCe-EEecCCCCChhHH
Q psy1489          59 LRPGL-KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAV-VLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~-~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~-~~~~~D~~~~~~~  125 (229)
                      +++.. +||+||||||.-+.++++.+.         .-+-.-.|..+-           ...+++. -+ .-|++.....
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP---------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~-~lDv~~~~w~   91 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALP---------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL-ALDVSAPPWP   91 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCC---------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe-EeecCCCCCc
Confidence            34444 599999999999999999883         333333444331           0112211 12 3344443110


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      -.....+....||.|++.-..         |+.....++..+..+.++|++||.|++.-
T Consensus        92 ~~~~~~~~~~~~D~i~~~N~l---------HI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   92 WELPAPLSPESFDAIFCINML---------HISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             cccccccCCCCcceeeehhHH---------HhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            000001234689999984332         44444566788999999999999998763

The function of this family is unknown.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.94  E-value=9.3e-05  Score=64.28  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=83.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC-CeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG-AVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~-~~~~~~~D~~~~~~~~  126 (229)
                      ..+|.+|||+=||-|.|+..+|...          ...|+|+|++|-           +.+.+ +..+ .+|..+.    
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g----------~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i-~gD~rev----  250 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKG----------RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI-LGDAREV----  250 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcC----------CceEEEEecCHHHHHHHHHHHHhcCccceeeEE-eccHHHh----
Confidence            4569999999999999999999863          345999999981           12344 6677 8887662    


Q ss_pred             HHHHHhCC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCCh------HHHHHHHHh
Q psy1489         127 RLVTILKD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR------PQLEESITR  199 (229)
Q Consensus       127 ~i~~~~~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~------~~~~~~l~~  199 (229)
                           .+. ..+|-|+++.+..               ....+..|.+.+++||.+....+...+.      ..+......
T Consensus       251 -----~~~~~~aDrIim~~p~~---------------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~  310 (341)
T COG2520         251 -----APELGVADRIIMGLPKS---------------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARK  310 (341)
T ss_pred             -----hhccccCCEEEeCCCCc---------------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhh
Confidence                 112 6799999977541               1245666888899999988766654332      222333333


Q ss_pred             hCCeeEEEcCCCCCCCCceEEEEec
Q psy1489         200 FYSQVKILKPPSSRSHSAELFLLGR  224 (229)
Q Consensus       200 ~F~~v~~~kp~~sr~~s~E~Y~v~~  224 (229)
                      .-.++.+..--.-|+-+...|-||-
T Consensus       311 ~~~~~~v~~~r~VksysP~v~hv~v  335 (341)
T COG2520         311 GGYKVEVLKVRRVKSYSPGVYHVVV  335 (341)
T ss_pred             ccCcceEEEEEEecccCCCeeEEEE
Confidence            2112333333334455555666653

>PRK04148 hypothetical protein; Provisional

Probab=97.89  E-value=4e-05  Score=57.81  Aligned_cols=94  Identities=16%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             CCCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          61 PGLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        61 ~g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      ++.+|||+|||+|. .+..|++. |          ..|+|+|+++..    .-..+.++ .+|+++++..     +  -+
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~-G----------~~ViaIDi~~~aV~~a~~~~~~~v-~dDlf~p~~~-----~--y~   76 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES-G----------FDVIVIDINEKAVEKAKKLGLNAF-VDDLFNPNLE-----I--YK   76 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC-C----------CEEEEEECCHHHHHHHHHhCCeEE-ECcCCCCCHH-----H--Hh
Confidence            46899999999996 87777753 3          699999999821    11356788 9999987521     1  24


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      .+|+|.+--+|         .    ++...+++.+.+   -|..++++.+.+..
T Consensus        77 ~a~liysirpp---------~----el~~~~~~la~~---~~~~~~i~~l~~e~  114 (134)
T PRK04148         77 NAKLIYSIRPP---------R----DLQPFILELAKK---INVPLIIKPLSGEE  114 (134)
T ss_pred             cCCEEEEeCCC---------H----HHHHHHHHHHHH---cCCCEEEEcCCCCC
Confidence            69999996554         1    223344444432   36778887776654

>KOG1663|consensus

Probab=97.86  E-value=8.6e-05  Score=60.51  Aligned_cols=98  Identities=11%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CC----CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PI----DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~----~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ...++||||.=||.-+...|..++        ++|+|+++|+++-.        ..    ..+.++ +++..+  ..+.+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp--------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i-~g~a~e--sLd~l  141 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALP--------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFI-EGPALE--SLDEL  141 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcC--------CCceEEEEecChHHHHHhHHHHHhccccceeeee-ecchhh--hHHHH
Confidence            458999999999999999888886        67899999998611        11    134555 554333  23333


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+.+.||.++.|.--        +.      ...-+..+.++||+||.+++.
T Consensus       142 ~~~~~~~tfDfaFvDadK--------~n------Y~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  142 LADGESGTFDFAFVDADK--------DN------YSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             HhcCCCCceeEEEEccch--------HH------HHHHHHHHHhhcccccEEEEe
Confidence            333456789999997621        11      124566788999999998864

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.86  E-value=0.00025  Score=57.77  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+++|+|+|.|.=+..+|-..         |+.+|+=+|...-           ..+++++++ .+.+.+.        
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~---------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~-~~RaE~~--------  129 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF---------PDLKVTLLESLGKKIAFLREVKKELGLENVEIV-HGRAEEF--------  129 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc---------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEe-hhhHhhc--------
Confidence            5899999999999999988433         6778999998751           245778888 7755542        


Q ss_pred             HhCCCC-ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         131 ILKDDK-LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       131 ~~~~~~-~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                       -.+.. ||+|+|-+.-               ........+..++++||.++.
T Consensus       130 -~~~~~~~D~vtsRAva---------------~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         130 -GQEKKQYDVVTSRAVA---------------SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             -ccccccCcEEEeehcc---------------chHHHHHHHHHhcccCCcchh
Confidence             22223 9999995421               123456778899999998764

>KOG1661|consensus

Probab=97.82  E-value=4.9e-05  Score=61.08  Aligned_cols=93  Identities=20%  Similarity=0.309  Sum_probs=62.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCC-CC-----C---------------CCCCeEEec
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLP-IY-----P---------------IDGAVVLSK  116 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~-~~-----~---------------~~~~~~~~~  116 (229)
                      ++||.+.||+|.|+|.++..++..++        +.+ .+.|||.-+ +.     .               ...+.++ .
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg--------~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv-v  150 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVG--------ATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV-V  150 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhc--------CCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE-e
Confidence            67999999999999999999998887        334 348998765 10     0               1134445 5


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      +|.....        -+..+||.|.+.++-                 ....+.....|++||.+++-+-
T Consensus       151 GDgr~g~--------~e~a~YDaIhvGAaa-----------------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  151 GDGRKGY--------AEQAPYDAIHVGAAA-----------------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CCccccC--------CccCCcceEEEccCc-----------------cccHHHHHHhhccCCeEEEeec
Confidence            5554421        224679999986532                 1223446677999999987554

>PRK00536 speE spermidine synthase; Provisional

Probab=97.81  E-value=0.00015  Score=60.98  Aligned_cols=109  Identities=15%  Similarity=0.020  Sum_probs=72.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~  124 (229)
                      +..++||-+|-|-|+.+..++++          + .+|+-||+++. .              .-|+++++ .        
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh----------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~-~--------  130 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY----------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-K--------  130 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc----------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe-e--------
Confidence            34589999999999999998876          3 39999999872 1              11233333 1        


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~~l~~~  200 (229)
                        .+.+ ...++||+|+.|..+.                ...++.+.+.|+|||.+++..-+    ......+...++..
T Consensus       131 --~~~~-~~~~~fDVIIvDs~~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~  191 (262)
T PRK00536        131 --QLLD-LDIKKYDLIICLQEPD----------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDF  191 (262)
T ss_pred             --hhhh-ccCCcCCEEEEcCCCC----------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhh
Confidence              0111 1236899999996531                23456689999999999985422    12245566777777


Q ss_pred             CCeeEEE
Q psy1489         201 YSQVKIL  207 (229)
Q Consensus       201 F~~v~~~  207 (229)
                      |..|..+
T Consensus       192 F~~v~~y  198 (262)
T PRK00536        192 FSIAMPF  198 (262)
T ss_pred             CCceEEE
Confidence            8766544

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.80  E-value=0.00039  Score=59.10  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C-------C-------CCCCeEEecCCCCChhHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y-------P-------IDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~-------~-------~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+||-+|-|.|+++..+++..         +..+++.||+++. .       +       -+++.++ .+|..+     .
T Consensus        78 k~VLiiGgGdG~tlRevlkh~---------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~-i~Dg~~-----~  142 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHL---------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII-IDDGVE-----F  142 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcC---------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE-eccHHH-----H
Confidence            599999999999999999875         4568999999961 0       1       1445555 454333     1


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---C-CChHHHHHHHHhhCCe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---G-RNRPQLEESITRFYSQ  203 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~-~~~~~~~~~l~~~F~~  203 (229)
                      +.+ . ..+||+|+.|..... |..  +.+    .....++.+.+.|+++|.++...-+   . .........+...|..
T Consensus       143 v~~-~-~~~fDvIi~D~tdp~-gp~--~~L----ft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~  213 (282)
T COG0421         143 LRD-C-EEKFDVIIVDSTDPV-GPA--EAL----FTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI  213 (282)
T ss_pred             HHh-C-CCcCCEEEEcCCCCC-Ccc--ccc----CCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence            222 2 338999999986421 210  000    1236778899999999999986211   1 1123344445555654


Q ss_pred             eE
Q psy1489         204 VK  205 (229)
Q Consensus       204 v~  205 (229)
                      +.
T Consensus       214 ~~  215 (282)
T COG0421         214 VP  215 (282)
T ss_pred             cc
Confidence            43

>KOG3420|consensus

Probab=97.80  E-value=2.2e-05  Score=59.55  Aligned_cols=67  Identities=24%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CCC----CCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PID----GAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~~----~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|+.++|||||.|-++...+- .         ..-.|+|+|+.|..      +.+    ++.++ ++|+.++.       
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm-~---------~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL-qcdildle-------  109 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSM-P---------KNESVLGFDIDPEALEIFTRNAEEFEVQIDLL-QCDILDLE-------  109 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhc-C---------CCceEEeeecCHHHHHHHhhchHHhhhhhhee-eeeccchh-------
Confidence            589999999999999855442 2         34589999999721      111    34677 88888743       


Q ss_pred             HhCCCCccEEEeCCCC
Q psy1489         131 ILKDDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~  146 (229)
                       +..+.||.++.|.++
T Consensus       110 -~~~g~fDtaviNppF  124 (185)
T KOG3420|consen  110 -LKGGIFDTAVINPPF  124 (185)
T ss_pred             -ccCCeEeeEEecCCC
Confidence             345789999999876

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.80  E-value=4.3e-05  Score=65.77  Aligned_cols=132  Identities=17%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC--CCCeEEecCCCCChhHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI--DGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~--~~~~~~~~~D~~~~~~~  125 (229)
                      ..++.+|+|-+||+|++...+.+++...  ........++|+|+++. .          ..  ....+. .+|...... 
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~--~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~-~~d~l~~~~-  119 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEK--RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII-QGDSLENDK-  119 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTC--HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE-ES-TTTSHS-
T ss_pred             ccccceeechhhhHHHHHHHHHHhhccc--ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc-ccccccccc-
Confidence            4567899999999999998887754100  00003468999999861 0          11  122355 677554221 


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccH-----HH-----HHHHHHHHHHHHHHcccCCCEEEEeecC-----CCCh
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDH-----DL-----ITQLAIAVIRFAVTYSKPGADCLIKIWD-----GRNR  190 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----~~-----~~~~~~~~l~~~~~~LkpgG~~v~~~~~-----~~~~  190 (229)
                           ......||+|+++++...........     +.     ....-...+..+.+.|++||++++-+..     ....
T Consensus       120 -----~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~  194 (311)
T PF02384_consen  120 -----FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSE  194 (311)
T ss_dssp             -----CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHH
T ss_pred             -----cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchH
Confidence                 01246899999998764331100000     00     0001113667789999999998765532     2223


Q ss_pred             HHHHHHHHh
Q psy1489         191 PQLEESITR  199 (229)
Q Consensus       191 ~~~~~~l~~  199 (229)
                      ..+++.|-.
T Consensus       195 ~~iR~~ll~  203 (311)
T PF02384_consen  195 KKIRKYLLE  203 (311)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            556655533

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2915|consensus

Probab=97.80  E-value=0.00011  Score=61.42  Aligned_cols=72  Identities=29%  Similarity=0.435  Sum_probs=55.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      ++||.+||+-|.|+|+++-++++.++        |.|+++..|..+..           .+ .++++. ..|+...... 
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~--------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~-hrDVc~~GF~-  172 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVA--------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT-HRDVCGSGFL-  172 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhC--------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE-EeecccCCcc-
Confidence            57999999999999999999999998        88999999997521           12 256666 6776653311 


Q ss_pred             HHHHHhCCCCccEEEeCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~  145 (229)
                           ..+..+|.|+.|++
T Consensus       173 -----~ks~~aDaVFLDlP  186 (314)
T KOG2915|consen  173 -----IKSLKADAVFLDLP  186 (314)
T ss_pred             -----ccccccceEEEcCC
Confidence                 22678999999986

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.77  E-value=0.00013  Score=64.05  Aligned_cols=70  Identities=13%  Similarity=0.123  Sum_probs=47.8

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+|||||||+|.++..+++..           .+|+|||+++ +          ..+.++.++ .+|+.+.-  .....
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~-----------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~-~~d~~~~~--~~~~~  263 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF-----------RRVLATEIAKPSVNAAQYNIAANNIDNVQII-RMSAEEFT--QAMNG  263 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC-----------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-EcCHHHHH--HHHhh
Confidence            3579999999999999888764           4899999996 2          134467788 88875421  11000


Q ss_pred             --Hh---C-----CCCccEEEeCCC
Q psy1489         131 --IL---K-----DDKLDVVLSDMA  145 (229)
Q Consensus       131 --~~---~-----~~~~D~V~sd~~  145 (229)
                        .+   .     ...||+|+.|++
T Consensus       264 ~~~~~~~~~~~~~~~~~d~v~lDPP  288 (353)
T TIGR02143       264 VREFRRLKGIDLKSYNCSTIFVDPP  288 (353)
T ss_pred             ccccccccccccccCCCCEEEECCC
Confidence              01   1     124899999986

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.77  E-value=3.9e-05  Score=59.85  Aligned_cols=117  Identities=19%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------C-CCCCeEEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------P-IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~-~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ..|+|++||-|+-+..+|+..           .+|+|||+++..           . ..+++++ .+|+.+.      ..
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~-----------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i-~gD~~~~------~~   62 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF-----------DRVIAIDIDPERLECAKHNAEVYGVADNIDFI-CGDFFEL------LK   62 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEE-ES-HHHH------GG
T ss_pred             CEEEEeccCcCHHHHHHHHhC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-eCCHHHH------Hh
Confidence            369999999999999999874           489999999721           1 2368899 9997762      11


Q ss_pred             HhCCCC-ccEEEeCCC---CCCCCCCcccHHHHHH--HHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         131 ILKDDK-LDVVLSDMA---PNATGMREMDHDLITQ--LAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       131 ~~~~~~-~D~V~sd~~---~~~~g~~~~d~~~~~~--~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      .+.... +|+|+.+++   |+.......|-...+.  ....+++.+.++   ...+++......+..++.+.....
T Consensus        63 ~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~~~l  135 (163)
T PF09445_consen   63 RLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLTREL  135 (163)
T ss_dssp             GB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT----
T ss_pred             hccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHhccc
Confidence            122222 899999875   1111111111100000  112333333322   245666666666777777665443

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG0820|consensus

Probab=97.76  E-value=0.00011  Score=61.41  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=56.9

Q ss_pred             HhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC---CCCeEEecC
Q psy1489          50 LEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI---DGAVVLSKC  117 (229)
Q Consensus        50 ~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~---~~~~~~~~~  117 (229)
                      .+|.++.. +++++.||++|.|||.++..+.+..           .+|+|+++++ |.        ..   ...+++ .+
T Consensus        48 ~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~-----------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~-~g  114 (315)
T KOG0820|consen   48 DQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG-----------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL-HG  114 (315)
T ss_pred             HHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc-----------CeEEEEecCcHHHHHHHHHhcCCCccceeeEE-ec
Confidence            34444444 5789999999999999999999863           5999999998 42        11   246778 89


Q ss_pred             CCCChhHHHHHHHHhCCCCccEEEeCCCCCC
Q psy1489         118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNA  148 (229)
Q Consensus       118 D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~  148 (229)
                      |+...          +.-.||.+++|.+++.
T Consensus       115 D~lK~----------d~P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen  115 DFLKT----------DLPRFDGCVSNLPYQI  135 (315)
T ss_pred             ccccC----------CCcccceeeccCCccc
Confidence            88763          2347999999887643

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.76  E-value=3.5e-05  Score=67.91  Aligned_cols=70  Identities=11%  Similarity=0.142  Sum_probs=48.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+||||+||+|.++..+++..           .+|+|||+++ +          ..+.++.++ .+|+.+.  ...+..
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~-----------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~-~~d~~~~--l~~~~~  272 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF-----------RRVLATEISKPSVAAAQYNIAANGIDNVQII-RMSAEEF--TQAMNG  272 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC-----------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEE-ECCHHHH--HHHHhh
Confidence            3579999999999999888753           4899999996 2          123467788 8887542  111111


Q ss_pred             Hh----------CCCCccEEEeCCC
Q psy1489         131 IL----------KDDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~----------~~~~~D~V~sd~~  145 (229)
                      ..          ....||+|+.|++
T Consensus       273 ~~~~~~~~~~~~~~~~~D~v~lDPP  297 (362)
T PRK05031        273 VREFNRLKGIDLKSYNFSTIFVDPP  297 (362)
T ss_pred             cccccccccccccCCCCCEEEECCC
Confidence            00          0225899999986

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.75  E-value=7.7e-05  Score=62.30  Aligned_cols=125  Identities=16%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------------CCCCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------------PIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------------~~~~~~~~~~~D~~~~~~~  125 (229)
                      +..+||-||-|.|+.+..+++..         +..+|+.||+++.  .             .-++++++ .+|...    
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~---------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~-~~Dg~~----  141 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHP---------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRII-IGDGRK----  141 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTST---------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEE-ESTHHH----
T ss_pred             CcCceEEEcCCChhhhhhhhhcC---------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEE-EhhhHH----
Confidence            56899999999999988887653         3468999999972  0             12467777 676433    


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhhC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRFY  201 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~F  201 (229)
                       .+.+ ..+.+||+|+.|... ..+...  .    -.....++.+.+.|+|||.+++..-...    ....+...++..|
T Consensus       142 -~l~~-~~~~~yDvIi~D~~d-p~~~~~--~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F  212 (246)
T PF01564_consen  142 -FLKE-TQEEKYDVIIVDLTD-PDGPAP--N----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVF  212 (246)
T ss_dssp             -HHHT-SSST-EEEEEEESSS-TTSCGG--G----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTS
T ss_pred             -HHHh-ccCCcccEEEEeCCC-CCCCcc--c----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhC
Confidence             1222 222389999999864 111111  1    1124677889999999999998653222    2344556777788


Q ss_pred             CeeEEEc
Q psy1489         202 SQVKILK  208 (229)
Q Consensus       202 ~~v~~~k  208 (229)
                      ..|..+.
T Consensus       213 ~~v~~~~  219 (246)
T PF01564_consen  213 PQVKPYT  219 (246)
T ss_dssp             SEEEEEE
T ss_pred             CceEEEE
Confidence            8666543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00011  Score=61.57  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=54.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.+++.||++|+|.|++|..|+++.           .+|+++++++ +        ....+++++ .+|+...+....  
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~-----------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi-~~DaLk~d~~~l--   93 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERA-----------ARVTAIEIDRRLAEVLKERFAPYDNLTVI-NGDALKFDFPSL--   93 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhc-----------CeEEEEEeCHHHHHHHHHhcccccceEEE-eCchhcCcchhh--
Confidence            3458999999999999999999985           4899999986 2        124578899 999887542211  


Q ss_pred             HHhCCCCccEEEeCCCCC
Q psy1489         130 TILKDDKLDVVLSDMAPN  147 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~  147 (229)
                        .   .++.|++|.+-+
T Consensus        94 --~---~~~~vVaNlPY~  106 (259)
T COG0030          94 --A---QPYKVVANLPYN  106 (259)
T ss_pred             --c---CCCEEEEcCCCc
Confidence              1   689999998754

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.73  E-value=5.9e-05  Score=59.69  Aligned_cols=88  Identities=25%  Similarity=0.305  Sum_probs=65.3

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------C-----CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------P-----IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~-----~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +.+.|||+|+|.++..+++..           .+|++++.+|..      .     ..+++++ .+|..+.+        
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A-----------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv-~gDA~~y~--------   93 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA-----------ERVIAIEKDPKRARLAEENLHVPGDVNWEVV-VGDARDYD--------   93 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh-----------ceEEEEecCcHHHHHhhhcCCCCCCcceEEE-eccccccc--------
Confidence            789999999999999988763           599999999821      1     2357778 88887743        


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                      +  +..|+|+|-|         .|.....+-+-.++..+..+||..++++
T Consensus        94 f--e~ADvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          94 F--ENADVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             c--cccceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            2  4689999965         3343333444467788888999999986

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.72  E-value=0.00025  Score=57.60  Aligned_cols=100  Identities=22%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------------------CCCCCeEE
Q psy1489          55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------------------PIDGAVVL  114 (229)
Q Consensus        55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------------------~~~~~~~~  114 (229)
                      ..+ +.+++.++|||||.|.....++...+         -.+++||++.+..                    ....+.+.
T Consensus        37 ~~~-l~~~dvF~DlGSG~G~~v~~aal~~~---------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~  106 (205)
T PF08123_consen   37 ELN-LTPDDVFYDLGSGVGNVVFQAALQTG---------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI  106 (205)
T ss_dssp             HTT---TT-EEEEES-TTSHHHHHHHHHH-----------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred             HhC-CCCCCEEEECCCCCCHHHHHHHHHcC---------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence            444 56789999999999999887776653         3469999998610                    12246677


Q ss_pred             ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                       ++|+.+.+....+   +  ...|+|+++...       .+...     ...|.....-||+|-++|.
T Consensus       107 -~gdfl~~~~~~~~---~--s~AdvVf~Nn~~-------F~~~l-----~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  107 -HGDFLDPDFVKDI---W--SDADVVFVNNTC-------FDPDL-----NLALAELLLELKPGARIIS  156 (205)
T ss_dssp             -CS-TTTHHHHHHH---G--HC-SEEEE--TT-------T-HHH-----HHHHHHHHTTS-TT-EEEE
T ss_pred             -ccCccccHhHhhh---h--cCCCEEEEeccc-------cCHHH-----HHHHHHHHhcCCCCCEEEE
Confidence             9999987644433   2  247999996532       22221     2334556667888877664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.71  E-value=2.2e-05  Score=56.57  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=40.3

Q ss_pred             EeecCCCCchHHHHHHHHhccCCCCCCCC--cEEEEEeCCCC---C-------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPK--GLVLSVDKLPI---Y-------P-IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        66 LDlGcGpG~~s~~la~~~~~~~~~~~~~~--~~v~gvD~~~~---~-------~-~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      |++|+..|..+..+++.+.        +.  ++++++|..+.   .       . ..+++++ +++..+  ...   . +
T Consensus         1 lEiG~~~G~st~~l~~~~~--------~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~--~l~---~-~   65 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALR--------DNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFI-QGDSPD--FLP---S-L   65 (106)
T ss_dssp             ----------------------------------EEEESS------------GGG-BTEEEE-ES-THH--HHH---H-H
T ss_pred             Ccccccccccccccccccc--------ccccCCEEEEECCCcccccchhhhhcCCCCeEEEE-EcCcHH--HHH---H-c
Confidence            6899999999988887664        23  38999999872   1       0 1257777 787643  222   2 2


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ++.++|+|+.|+...            .+.....+..+...|+|||.+++.
T Consensus        66 ~~~~~dli~iDg~H~------------~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   66 PDGPIDLIFIDGDHS------------YEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             HH--EEEEEEES---------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCC------------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence            256899999998421            133456788899999999988763

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.70  E-value=3.6e-05  Score=61.40  Aligned_cols=90  Identities=21%  Similarity=0.227  Sum_probs=64.0

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|+|+|.|.=+..++-..         |+.+++-+|...-           ..+++++++ .+.+.+         ..
T Consensus        51 ~~lDiGSGaGfPGipLaI~~---------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~-~~R~E~---------~~  111 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR---------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI-NGRAEE---------PE  111 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH----------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE-ES-HHH---------TT
T ss_pred             eEEecCCCCCChhHHHHHhC---------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE-Eeeecc---------cc
Confidence            89999999999999988765         7789999998851           145788888 665443         13


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      ....||+|++-+.-         .      ....+..+..+|++||.+++  +.++.
T Consensus       112 ~~~~fd~v~aRAv~---------~------l~~l~~~~~~~l~~~G~~l~--~KG~~  151 (184)
T PF02527_consen  112 YRESFDVVTARAVA---------P------LDKLLELARPLLKPGGRLLA--YKGPD  151 (184)
T ss_dssp             TTT-EEEEEEESSS---------S------HHHHHHHHGGGEEEEEEEEE--EESS-
T ss_pred             cCCCccEEEeehhc---------C------HHHHHHHHHHhcCCCCEEEE--EcCCC
Confidence            46789999996531         1      23567779999999999875  44443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.62  E-value=0.00061  Score=55.26  Aligned_cols=127  Identities=20%  Similarity=0.198  Sum_probs=75.7

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEe
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS  142 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~s  142 (229)
                      -++||+||-...........            -.|+.||+++  .-+++  . +.|+++....    . .+++.||+|.+
T Consensus        53 lrlLEVGals~~N~~s~~~~------------fdvt~IDLns--~~~~I--~-qqDFm~rplp----~-~~~e~FdvIs~  110 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGW------------FDVTRIDLNS--QHPGI--L-QQDFMERPLP----K-NESEKFDVISL  110 (219)
T ss_pred             ceEEeecccCCCCcccccCc------------eeeEEeecCC--CCCCc--e-eeccccCCCC----C-CcccceeEEEE
Confidence            69999999855433222222            3699999987  23333  3 7787773211    0 23678999999


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCE-----EEEeecC-------CCChHHHHHHHHhh-CCeeEEEcC
Q psy1489         143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGAD-----CLIKIWD-------GRNRPQLEESITRF-YSQVKILKP  209 (229)
Q Consensus       143 d~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~-----~v~~~~~-------~~~~~~~~~~l~~~-F~~v~~~kp  209 (229)
                      .+..+..+    ++    ....+.+..+.++|+|+|.     +.+....       .-....+.+.|... |..++..  
T Consensus       111 SLVLNfVP----~p----~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~--  180 (219)
T PF11968_consen  111 SLVLNFVP----DP----KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK--  180 (219)
T ss_pred             EEEEeeCC----CH----HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE--
Confidence            77543321    12    1234567779999999999     6653321       11345666777776 7666553  


Q ss_pred             CCCCCCCceEEEEecc
Q psy1489         210 PSSRSHSAELFLLGRG  225 (229)
Q Consensus       210 ~~sr~~s~E~Y~v~~~  225 (229)
                          ....=+|++++.
T Consensus       181 ----~~~Kl~y~l~r~  192 (219)
T PF11968_consen  181 ----KSKKLAYWLFRK  192 (219)
T ss_pred             ----ecCeEEEEEEee
Confidence                334445666553

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.55  E-value=0.00029  Score=56.88  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=62.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++| +.|+++|..-||-+...|..+...     ++.++|+|||+..  ..       + .++++++ +||..++++...+
T Consensus        31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i-~Gds~d~~~~~~v  103 (206)
T PF04989_consen   31 LKP-DLIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPHNRKAIESHPMSPRITFI-QGDSIDPEIVDQV  103 (206)
T ss_dssp             H---SEEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT--S-GGGG----TTEEEE-ES-SSSTHHHHTS
T ss_pred             hCC-CeEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchhchHHHhhccccCceEEE-ECCCCCHHHHHHH
Confidence            344 799999999999887776544210     1568999999942  11       1 1579999 9999998877666


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..........+|+-|...      ..+|      +...|.....++.+|+.+|+.-
T Consensus       104 ~~~~~~~~~vlVilDs~H------~~~h------vl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  104 RELASPPHPVLVILDSSH------THEH------VLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             GSS----SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEETS
T ss_pred             HHhhccCCceEEEECCCc------cHHH------HHHHHHHhCccCCCCCEEEEEe
Confidence            554444567799998742      1122      4466777889999999998753

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.53  E-value=0.00022  Score=63.06  Aligned_cols=90  Identities=18%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      -+|||+.||+|..++.++.+.+        +..+|+++|+++-           ..+.+++++ ++|....     +.. 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~--------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~-~~Da~~~-----l~~-  110 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIE--------GVREVFANDINPKAVESIKNNVEYNSVENIEVP-NEDAANV-----LRY-  110 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-chhHHHH-----HHH-
Confidence            5899999999999999988752        2358999999971           122345666 6664431     221 


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      . ...||+|..|+ +   |.           ....+..+.+.+++||.+.+.
T Consensus       111 ~-~~~fDvIdlDP-f---Gs-----------~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       111 R-NRKFHVIDIDP-F---GT-----------PAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             h-CCCCCEEEeCC-C---CC-----------cHHHHHHHHHhcccCCEEEEE
Confidence            1 35799999987 3   21           124566788889999998876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.53  E-value=5.8e-05  Score=67.95  Aligned_cols=98  Identities=11%  Similarity=-0.016  Sum_probs=53.8

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-CCCeEEecCCCCChhHHHH---HHHHhCCCCcc
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDR---LVTILKDDKLD  138 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-~~~~~~~~~D~~~~~~~~~---i~~~~~~~~~D  138 (229)
                      ..+||+|||.|.|+.+|.++.             |+.+-+.+-..- ..+++. ..-- -+.....   -+-.++++.||
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~-------------V~t~s~a~~d~~~~qvqfa-leRG-vpa~~~~~~s~rLPfp~~~fD  183 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERN-------------VTTMSFAPNDEHEAQVQFA-LERG-VPAMIGVLGSQRLPFPSNAFD  183 (506)
T ss_pred             EEEEeccceeehhHHHHhhCC-------------ceEEEcccccCCchhhhhh-hhcC-cchhhhhhccccccCCccchh
Confidence            468999999999999988762             333333221000 111111 0000 0000000   01126789999


Q ss_pred             EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      +|.|.-+..    .....    .  ...|-++-|+|||||.|+....
T Consensus       184 mvHcsrc~i----~W~~~----~--g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  184 MVHCSRCLI----PWHPN----D--GFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hhhcccccc----cchhc----c--cceeehhhhhhccCceEEecCC
Confidence            999965431    11111    0  1356678999999999987654

; GO: 0008168 methyltransferase activity

>KOG1331|consensus

Probab=97.52  E-value=0.00034  Score=58.76  Aligned_cols=99  Identities=21%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---CCCC-eEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---IDGA-VVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---~~~~-~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ...|..++|.|||-|-....     .        |.+.++|.|++. +..   ..+. ... .+|+..        ....
T Consensus        43 ~~~gsv~~d~gCGngky~~~-----~--------p~~~~ig~D~c~~l~~~ak~~~~~~~~-~ad~l~--------~p~~  100 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLGV-----N--------PLCLIIGCDLCTGLLGGAKRSGGDNVC-RADALK--------LPFR  100 (293)
T ss_pred             cCCcceeeecccCCcccCcC-----C--------CcceeeecchhhhhccccccCCCceee-hhhhhc--------CCCC
Confidence            44689999999999965322     1        567899999986 111   1122 233 444443        2355


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      +..||.+++-.        ...|+........++++..+.|+|||...+.+|..
T Consensus       101 ~~s~d~~lsia--------vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  101 EESFDAALSIA--------VIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             CCccccchhhh--------hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            77899988843        23455556667789999999999999998888764

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.34  E-value=0.002  Score=59.63  Aligned_cols=43  Identities=16%  Similarity=0.064  Sum_probs=30.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+.+|||.|||+|++...++.+....... ....-.++|+|+++
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-~~~~~~i~g~DId~   73 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-KEVELNIYFADIDK   73 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCc-ccceeeeeeechhH
Confidence            45699999999999999988876311100 00124789999986

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.34  E-value=0.00066  Score=56.51  Aligned_cols=85  Identities=31%  Similarity=0.384  Sum_probs=59.5

Q ss_pred             CccchhhhhhHhhhhhc-------CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----
Q psy1489          40 NYRCRSAFKLLEIDSKI-------KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----  108 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~-------~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----  108 (229)
                      ...||+..||.|.--.|       .-+.+|+..+|||+.||+|+-.|.++.           -.|++||--+|.+.    
T Consensus       183 dAPSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~-----------m~V~aVDng~ma~sL~dt  251 (358)
T COG2933         183 DAPSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRN-----------MRVYAVDNGPMAQSLMDT  251 (358)
T ss_pred             CCCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcc-----------eEEEEeccchhhhhhhcc
Confidence            35788888888742222       124579999999999999999988763           59999999887531    


Q ss_pred             CCCeEEecCCCCChhHHHHHHHHhC-CCCccEEEeCCC
Q psy1489         109 DGAVVLSKCDFTQPDIQDRLVTILK-DDKLDVVLSDMA  145 (229)
Q Consensus       109 ~~~~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V~sd~~  145 (229)
                      ..++.. ..|-..         +-+ ....|-.+|||.
T Consensus       252 g~v~h~-r~DGfk---------~~P~r~~idWmVCDmV  279 (358)
T COG2933         252 GQVTHL-REDGFK---------FRPTRSNIDWMVCDMV  279 (358)
T ss_pred             cceeee-eccCcc---------cccCCCCCceEEeehh
Confidence            234444 444333         112 567999999995

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.00032  Score=63.11  Aligned_cols=70  Identities=27%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..++++|+|+=||.|.|++.+|++.           .+|+|+|+++-           ..+.++.+. .++..+.     
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~~-----------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~-~~~ae~~-----  353 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKRV-----------KKVHGVEISPEAVEAAQENAAANGIDNVEFI-AGDAEEF-----  353 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhcccC-----------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEE-eCCHHHH-----
Confidence            3467899999999999999999764           59999999961           235567777 7765542     


Q ss_pred             HHHHhCCCCccEEEeCCC
Q psy1489         128 LVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~  145 (229)
                      +.....+..+|.|+.|++
T Consensus       354 ~~~~~~~~~~d~VvvDPP  371 (432)
T COG2265         354 TPAWWEGYKPDVVVVDPP  371 (432)
T ss_pred             hhhccccCCCCEEEECCC
Confidence            222223568999999985

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.30  E-value=0.00037  Score=55.52  Aligned_cols=38  Identities=29%  Similarity=0.444  Sum_probs=33.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      +++|++|+|+=.|.|.|+..++..++        +.|.|+++=..+
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vg--------p~G~Vy~~~p~e   83 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVG--------PKGKVYAYVPAE   83 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcC--------CceeEEEecchh
Confidence            68999999999999999999999998        888999885544

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.25  E-value=0.00079  Score=57.40  Aligned_cols=41  Identities=12%  Similarity=0.059  Sum_probs=28.4

Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.||+|+|-...         .+...+....++....+.|+|||.|++-
T Consensus       221 ~~~fD~I~cRNvl---------iyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        221 PGPFDAIFCRNVM---------IYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             CCCcceeeHhhHH---------hcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            4689999993221         1111234568899999999999988763

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.22  E-value=0.0032  Score=60.29  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=64.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhc-----cCC--------------------C--------CCCCCcEEEEEeCCC-C
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNS-----HGY--------------------D--------SKQPKGLVLSVDKLP-I  105 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~-----~~~--------------------~--------~~~~~~~v~gvD~~~-~  105 (229)
                      +++..++|-+||+|.+.+.++.....     .+.                    +        ......+++|+|+++ +
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            46789999999999999887764210     000                    0        001234799999997 2


Q ss_pred             ----------CCCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc
Q psy1489         106 ----------YPID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS  174 (229)
Q Consensus       106 ----------~~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L  174 (229)
                                ..+. .+.+. ++|+.+..      .....+.+|+|++|++.   |.+..+.....++- ..+....+..
T Consensus       269 v~~A~~N~~~~g~~~~i~~~-~~D~~~~~------~~~~~~~~d~IvtNPPY---g~r~~~~~~l~~lY-~~lg~~lk~~  337 (702)
T PRK11783        269 IQAARKNARRAGVAELITFE-VKDVADLK------NPLPKGPTGLVISNPPY---GERLGEEPALIALY-SQLGRRLKQQ  337 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEE-eCChhhcc------cccccCCCCEEEECCCC---cCccCchHHHHHHH-HHHHHHHHHh
Confidence                      1222 36677 88877632      11223579999999865   33322222222222 2234445555


Q ss_pred             cCCCEEEE
Q psy1489         175 KPGADCLI  182 (229)
Q Consensus       175 kpgG~~v~  182 (229)
                      .+|+.+++
T Consensus       338 ~~g~~~~l  345 (702)
T PRK11783        338 FGGWNAAL  345 (702)
T ss_pred             CCCCeEEE
Confidence            58888765

>KOG2187|consensus

Probab=97.13  E-value=0.00079  Score=60.82  Aligned_cols=55  Identities=18%  Similarity=0.139  Sum_probs=41.5

Q ss_pred             hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCC
Q psy1489          55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQ  121 (229)
Q Consensus        55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~  121 (229)
                      ....+..+..+||++||||.++..+++..           .+|+||++++-           ..+.+++|+ .+-..+
T Consensus       377 e~~~l~~~k~llDv~CGTG~iglala~~~-----------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi-~gqaE~  442 (534)
T KOG2187|consen  377 EWAGLPADKTLLDVCCGTGTIGLALARGV-----------KRVIGVEISPDAVEDAEKNAQINGISNATFI-VGQAED  442 (534)
T ss_pred             HHhCCCCCcEEEEEeecCCceehhhhccc-----------cceeeeecChhhcchhhhcchhcCccceeee-ecchhh
Confidence            33345677899999999999999999865           59999999972           124577888 773333

>PRK11524 putative methyltransferase; Provisional

Probab=97.13  E-value=0.0067  Score=51.71  Aligned_cols=91  Identities=13%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCC-----CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATG-----MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g-----~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .++ ++|..+      +...+++++||+|++|++.....     ....+...........+.++.++|||||.|++.. .
T Consensus        10 ~i~-~gD~~~------~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~-~   81 (284)
T PRK11524         10 TII-HGDALT------ELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN-S   81 (284)
T ss_pred             EEE-eccHHH------HHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc-C
Confidence            455 676554      22346788999999998753211     0111122334456788999999999999998742 2


Q ss_pred             CCChHHHHHHHHhhC---CeeEEEcCC
Q psy1489         187 GRNRPQLEESITRFY---SQVKILKPP  210 (229)
Q Consensus       187 ~~~~~~~~~~l~~~F---~~v~~~kp~  210 (229)
                      ......+...++..|   ..+.+.|+.
T Consensus        82 ~~~~~~~~~~~~~~f~~~~~iiW~k~~  108 (284)
T PRK11524         82 TENMPFIDLYCRKLFTIKSRIVWSYDS  108 (284)
T ss_pred             chhhhHHHHHHhcCcceEEEEEEEeCC
Confidence            222222223333323   445566653

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.12  E-value=0.00025  Score=62.36  Aligned_cols=71  Identities=27%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChh-HHH----
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPD-IQD----  126 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~-~~~----  126 (229)
                      ..||||.||.|.++..+|...           .+|+|||+++ +          ..+.+++++ .++..+.. ...    
T Consensus       198 ~~vlDlycG~G~fsl~la~~~-----------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~-~~~~~~~~~~~~~~r~  265 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA-----------KKVIGVEIVEEAVEDARENAKLNGIDNVEFI-RGDAEDFAKALAKARE  265 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS-----------SEEEEEES-HHHHHHHHHHHHHTT--SEEEE-E--SHHCCCHHCCS-G
T ss_pred             CcEEEEeecCCHHHHHHHhhC-----------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEE-EeeccchhHHHHhhHH
Confidence            389999999999999999764           5999999985 1          246778887 65543210 000    


Q ss_pred             --HHHH-HhCCCCccEEEeCCC
Q psy1489         127 --RLVT-ILKDDKLDVVLSDMA  145 (229)
Q Consensus       127 --~i~~-~~~~~~~D~V~sd~~  145 (229)
                        .+.. .+....+|+|+.|++
T Consensus       266 ~~~~~~~~~~~~~~d~vilDPP  287 (352)
T PF05958_consen  266 FNRLKGIDLKSFKFDAVILDPP  287 (352)
T ss_dssp             GTTGGGS-GGCTTESEEEE---
T ss_pred             HHhhhhhhhhhcCCCEEEEcCC
Confidence              0000 022346899999985

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.11  E-value=0.0011  Score=53.47  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             CCeeEeecCCCCc--hH--HHHHHHHhccCCCCCCCCcEEEEEeCCCC---------------CCC--------------
Q psy1489          62 GLKVLDCGAAPGS--WS--QVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------------YPI--------------  108 (229)
Q Consensus        62 g~~VLDlGcGpG~--~s--~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------------~~~--------------  108 (229)
                      .-+|...||++|.  +|  ..+.+....    ......+|+|.|+++.               ..+              
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~----~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~  107 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPG----ALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDG  107 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-----TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcc----cCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence            4689999999995  33  333342210    0001358999999951               011              


Q ss_pred             ----------CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489         109 ----------DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA  178 (229)
Q Consensus       109 ----------~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG  178 (229)
                                ..+.|. +.|+.+.        ....+.||+|+|--..         .+-..+....+++...+.|+|||
T Consensus       108 ~~~~v~~~lr~~V~F~-~~NL~~~--------~~~~~~fD~I~CRNVl---------IYF~~~~~~~vl~~l~~~L~pgG  169 (196)
T PF01739_consen  108 GGYRVKPELRKMVRFR-RHNLLDP--------DPPFGRFDLIFCRNVL---------IYFDPETQQRVLRRLHRSLKPGG  169 (196)
T ss_dssp             CCTTE-HHHHTTEEEE-E--TT-S--------------EEEEEE-SSG---------GGS-HHHHHHHHHHHGGGEEEEE
T ss_pred             CceeEChHHcCceEEE-ecccCCC--------CcccCCccEEEecCEE---------EEeCHHHHHHHHHHHHHHcCCCC
Confidence                      124555 6665551        1224689999994321         22223456788999999999999


Q ss_pred             EEEEe
Q psy1489         179 DCLIK  183 (229)
Q Consensus       179 ~~v~~  183 (229)
                      .|++-
T Consensus       170 ~L~lG  174 (196)
T PF01739_consen  170 YLFLG  174 (196)
T ss_dssp             EEEE-
T ss_pred             EEEEe
Confidence            99874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.11  E-value=0.0012  Score=55.93  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             HhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          50 LEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        50 ~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .|+..+..-++| .+|||+|||||.-+-.+.+..+        ....++++|.|+
T Consensus        23 ~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~--------~~~~~~~vd~s~   68 (274)
T PF09243_consen   23 SELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWP--------SLKEYTCVDRSP   68 (274)
T ss_pred             HHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhc--------CceeeeeecCCH
Confidence            344444332443 6899999999987666666553        234799999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG0024|consensus

Probab=97.10  E-value=0.003  Score=54.17  Aligned_cols=101  Identities=23%  Similarity=0.294  Sum_probs=64.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCC--Ch-hHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFT--QP-DIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~--~~-~~~~~i~~  130 (229)
                      +++|.+||-+|+|| |-.+...|+-+         +..+|+.+|+.+-    ..--+++.+ ..+-.  .+ .....+..
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~---------GA~~VVi~d~~~~Rle~Ak~~Ga~~~-~~~~~~~~~~~~~~~v~~  236 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAM---------GASDVVITDLVANRLELAKKFGATVT-DPSSHKSSPQELAELVEK  236 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHc---------CCCcEEEeecCHHHHHHHHHhCCeEE-eeccccccHHHHHHHHHh
Confidence            56799999999999 77777777776         4679999999871    111244433 11111  12 22334444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .+....+|+.+.     ++|.            ...++.+...++.||++++..+.
T Consensus       237 ~~g~~~~d~~~d-----CsG~------------~~~~~aai~a~r~gGt~vlvg~g  275 (354)
T KOG0024|consen  237 ALGKKQPDVTFD-----CSGA------------EVTIRAAIKATRSGGTVVLVGMG  275 (354)
T ss_pred             hccccCCCeEEE-----ccCc------------hHHHHHHHHHhccCCEEEEeccC
Confidence            555567898886     3342            23455678889999998776554

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.10  E-value=0.0024  Score=54.11  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCC-eEEecCCCCChhHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGA-VVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~-~~~~~~D~~~~~~~~~i~  129 (229)
                      .-+|||++||+|..-.-+.+..+      . ....|.-.|.++..           .+.++ +|. ++|..+......+ 
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~------~-~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~-~~dAfd~~~l~~l-  206 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHP------E-RPDSILLRDYSPINVEKGRALIAERGLEDIARFE-QGDAFDRDSLAAL-  206 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCC------C-CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEE-ecCCCCHhHhhcc-
Confidence            46899999999998777666542      1 12478889999731           24555 888 9999986543322 


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                          .-..++++..+-...        +..-.++...+.-+.+.|.|||.+|..
T Consensus       207 ----~p~P~l~iVsGL~El--------F~Dn~lv~~sl~gl~~al~pgG~lIyT  248 (311)
T PF12147_consen  207 ----DPAPTLAIVSGLYEL--------FPDNDLVRRSLAGLARALEPGGYLIYT  248 (311)
T ss_pred             ----CCCCCEEEEecchhh--------CCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence                235788887554321        111234566788889999999999764

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.03  E-value=0.0014  Score=54.90  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC---------------ChHHHHHHHHhh
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR---------------NRPQLEESITRF  200 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~---------------~~~~~~~~l~~~  200 (229)
                      +||+|++...... ...+      .+.-..+++.+.++|||||.|++...-..               +...+.+.++..
T Consensus       158 ~~D~v~s~fcLE~-a~~d------~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a  230 (256)
T PF01234_consen  158 KFDCVISSFCLES-ACKD------LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA  230 (256)
T ss_dssp             SEEEEEEESSHHH-H-SS------HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT
T ss_pred             chhhhhhhHHHHH-HcCC------HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc
Confidence            5999998664210 0011      22345789999999999999997542111               245566677665


Q ss_pred             -CCeeEEEcCCCCCCCCceE-EEEec
Q psy1489         201 -YSQVKILKPPSSRSHSAEL-FLLGR  224 (229)
Q Consensus       201 -F~~v~~~kp~~sr~~s~E~-Y~v~~  224 (229)
                       |.-....+ .........+ |++|+
T Consensus       231 G~~i~~~~~-~~~~~d~~~~~f~~a~  255 (256)
T PF01234_consen  231 GFDIEDLEK-QSKVSDYEGMFFLVAR  255 (256)
T ss_dssp             TEEEEEEEG--TTTB---EEEEEEEE
T ss_pred             CCEEEeccc-ccCcCCCCcEEEEEEe
Confidence             54344443 3444444444 44444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.01  E-value=0.0014  Score=49.71  Aligned_cols=117  Identities=14%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             EEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHH
Q psy1489          96 LVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA  163 (229)
Q Consensus        96 ~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~  163 (229)
                      +|+|.|+++..           .. .++.++ ..+-.+      +.+.++++++|+++.|..-.+.|.+..  ....+..
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li-~~sHe~------l~~~i~~~~v~~~iFNLGYLPggDk~i--~T~~~TT   71 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLI-LDSHEN------LDEYIPEGPVDAAIFNLGYLPGGDKSI--TTKPETT   71 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEE-ES-GGG------GGGT--S--EEEEEEEESB-CTS-TTS--B--HHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEE-ECCHHH------HHhhCccCCcCEEEEECCcCCCCCCCC--CcCcHHH
Confidence            58999998620           11 246666 554333      334455568999999876544454433  2333445


Q ss_pred             HHHHHHHHHcccCCCEEEEeecCCCC-----hHHHHHHHHhh----CCeeEEEcCCCCCCCCceEEEEe
Q psy1489         164 IAVIRFAVTYSKPGADCLIKIWDGRN-----RPQLEESITRF----YSQVKILKPPSSRSHSAELFLLG  223 (229)
Q Consensus       164 ~~~l~~~~~~LkpgG~~v~~~~~~~~-----~~~~~~~l~~~----F~~v~~~kp~~sr~~s~E~Y~v~  223 (229)
                      ..+++.+.++|+|||.+++.++.+..     ...+.+.+...    | .|..+.+ .-|.++....++.
T Consensus        72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~-~V~~~~~-~N~~~~pp~l~~i  138 (140)
T PF06962_consen   72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEF-NVLKYQF-INQKNNPPLLVII  138 (140)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTE-EEEEEEE-SS-SS---EEEEE
T ss_pred             HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceE-EEEEEEc-cCCCCCCCEEEEE
Confidence            67899999999999999998988653     23334444332    3 2444434 4445555544443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.00  E-value=0.0021  Score=58.09  Aligned_cols=132  Identities=14%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---CC-----CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---PI-----DGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~~-----~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ..|+|+.+|.|+|+..|...          +   |.-.-.-|..   .+     .++.-+ .-|+.+.     +.. + +
T Consensus       367 RNVMDMnAg~GGFAAAL~~~----------~---VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~-----fsT-Y-P  425 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD----------P---VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEA-----FST-Y-P  425 (506)
T ss_pred             eeeeeecccccHHHHHhccC----------C---ceEEEecccCCCCcchhhhhcccchh-ccchhhc-----cCC-C-C
Confidence            57999999999999887653          2   2222222211   01     122222 2333331     111 1 5


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS  214 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~  214 (229)
                      ..||+|.++.-+..        +...-....++-++-|+|+|||.+++... ..-..++...+..+-=++.++.. ...+
T Consensus       426 RTYDLlHA~~lfs~--------~~~rC~~~~illEmDRILRP~G~~iiRD~-~~vl~~v~~i~~~lrW~~~~~d~-e~g~  495 (506)
T PF03141_consen  426 RTYDLLHADGLFSL--------YKDRCEMEDILLEMDRILRPGGWVIIRDT-VDVLEKVKKIAKSLRWEVRIHDT-EDGP  495 (506)
T ss_pred             cchhheehhhhhhh--------hcccccHHHHHHHhHhhcCCCceEEEecc-HHHHHHHHHHHHhCcceEEEEec-CCCC
Confidence            68999999765421        11112345788889999999999988532 12234444555554334555533 4445


Q ss_pred             CCceEEEEecc
Q psy1489         215 HSAELFLLGRG  225 (229)
Q Consensus       215 ~s~E~Y~v~~~  225 (229)
                      ...|..+||++
T Consensus       496 ~~~EkiL~~~K  506 (506)
T PF03141_consen  496 DGPEKILICQK  506 (506)
T ss_pred             CCCceEEEEEC
Confidence            66899999975

; GO: 0008168 methyltransferase activity

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.017  Score=49.29  Aligned_cols=75  Identities=17%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++...+|.--|-|+.+..+++.++        +.++++|+|..+-  .       + -.++.++ ++++.+....   
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~--------~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v-~~~F~~l~~~---   88 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLP--------DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLV-HGNFANLAEA---   88 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCC--------CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEE-eCcHHHHHHH---
Confidence            45778999999999999999999986        5678999999871  1       1 2367788 7876663221   


Q ss_pred             HHHhCCCCccEEEeCCC
Q psy1489         129 VTILKDDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~  145 (229)
                      .....-+++|-|+.|..
T Consensus        89 l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          89 LKELGIGKVDGILLDLG  105 (314)
T ss_pred             HHhcCCCceeEEEEecc
Confidence            11223457888888753

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.94  E-value=0.0073  Score=53.02  Aligned_cols=101  Identities=27%  Similarity=0.355  Sum_probs=63.1

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----C-CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----Y-PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~-~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++.+|+-+|||| |.++..+++..         +..+|+.+|.++-    . ..-+...+ ...-.+ +....+.+...
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~---------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~-~~~~~~-~~~~~~~~~t~  235 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLL---------GASVVIVVDRSPERLELAKEAGGADVV-VNPSED-DAGAEILELTG  235 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc---------CCceEEEeCCCHHHHHHHHHhCCCeEe-ecCccc-cHHHHHHHHhC
Confidence            3455999999999 77777777776         4679999999871    1 11233322 111111 22333434444


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      +..+|+|+-     ++|.            ..++..+.+.++|||++++.-..+.
T Consensus       236 g~g~D~vie-----~~G~------------~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         236 GRGADVVIE-----AVGS------------PPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             CCCCCEEEE-----CCCC------------HHHHHHHHHHhcCCCEEEEEeccCC
Confidence            457999996     2231            1367779999999999987654433

>KOG1269|consensus

Probab=96.92  E-value=0.00021  Score=62.79  Aligned_cols=97  Identities=25%  Similarity=0.238  Sum_probs=66.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----C-------CC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----P-------ID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~-------~~-~~~~~~~~D~~~~~~~~  126 (229)
                      ..++..++|+|||-|..+.+++...          ...++|+|.++-.    .       +. ...++ .+|+.+     
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~----------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~-~~~~~~-----  171 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK----------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFV-VADFGK-----  171 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc----------cCCccCCCcCHHHHHHHHHHHHHHHhhhhccee-hhhhhc-----
Confidence            3567799999999999999998864          3689999998621    0       11 11123 344443     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         ..+++..||.+.+.-.           .........++.++.++++|||.++++.|
T Consensus       172 ---~~fedn~fd~v~~ld~-----------~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  172 ---MPFEDNTFDGVRFLEV-----------VCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             ---CCCCccccCcEEEEee-----------cccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence               2366788999887321           11122235788999999999999998765

>PRK13699 putative methylase; Provisional

Probab=96.88  E-value=0.014  Score=48.16  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=51.0

Q ss_pred             HHHHhCCCCccEEEeCCCCCCC--C--CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-C-
Q psy1489         128 LVTILKDDKLDVVLSDMAPNAT--G--MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-Y-  201 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~--g--~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F-  201 (229)
                      +...++++++|+|+.|++-...  .  ..........+.....+.++.++|||||.+++- ........+...++.. | 
T Consensus        12 ~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~~~~~~~~~~al~~~GF~   90 (227)
T PRK13699         12 VMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-YGWNRVDRFMAAWKNAGFS   90 (227)
T ss_pred             HHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-eccccHHHHHHHHHHCCCE
Confidence            3345889999999999876421  0  000111122345668899999999999988752 1222234555555543 3 


Q ss_pred             --CeeEEEcCCCC
Q psy1489         202 --SQVKILKPPSS  212 (229)
Q Consensus       202 --~~v~~~kp~~s  212 (229)
                        ..+.+.|+...
T Consensus        91 l~~~IiW~K~~~~  103 (227)
T PRK13699         91 VVGHLVFTKNYTS  103 (227)
T ss_pred             EeeEEEEECCCCC
Confidence              45677787544

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.88  E-value=0.0016  Score=54.86  Aligned_cols=69  Identities=25%  Similarity=0.363  Sum_probs=51.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++..|||+|+|+|.+|..+++..           .+|+++|+++ +        ...++++++ .+|+.+.+....   
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~-----------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi-~~D~l~~~~~~~---   93 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRG-----------KRVIAVEIDPDLAKHLKERFASNPNVEVI-NGDFLKWDLYDL---   93 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHS-----------SEEEEEESSHHHHHHHHHHCTTCSSEEEE-ES-TTTSCGGGH---
T ss_pred             CCCCEEEEeCCCCccchhhHhccc-----------CcceeecCcHhHHHHHHHHhhhcccceee-ecchhccccHHh---
Confidence            478999999999999999999874           5999999986 1        124678999 999887442211   


Q ss_pred             HhCCCCccEEEeCCC
Q psy1489         131 ILKDDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~  145 (229)
                       + ......|+++.+
T Consensus        94 -~-~~~~~~vv~NlP  106 (262)
T PF00398_consen   94 -L-KNQPLLVVGNLP  106 (262)
T ss_dssp             -C-SSSEEEEEEEET
T ss_pred             -h-cCCceEEEEEec
Confidence             1 345678888765

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2671|consensus

Probab=96.78  E-value=0.0055  Score=52.96  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-CC------------------CCeEEec
Q psy1489          57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-ID------------------GAVVLSK  116 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~~------------------~~~~~~~  116 (229)
                      ...++|+.|.|==-|||++....|.. |          +.|+|-||+- +.. -.                  =+.++ .
T Consensus       204 Amv~pGdivyDPFVGTGslLvsaa~F-G----------a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl-~  271 (421)
T KOG2671|consen  204 AMVKPGDIVYDPFVGTGSLLVSAAHF-G----------AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL-T  271 (421)
T ss_pred             hccCCCCEEecCccccCceeeehhhh-c----------ceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee-e
Confidence            34689999999999999998887765 4          6999999985 211 00                  13345 6


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCC---------------C-------CCCcccHHHHHHHHHHHHHHHHHcc
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNA---------------T-------GMREMDHDLITQLAIAVIRFAVTYS  174 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~---------------~-------g~~~~d~~~~~~~~~~~l~~~~~~L  174 (229)
                      +|.+++..+.       ...||.|+||++-.+               +       -.+...+.....+.-..|..+.+.|
T Consensus       272 ~D~sn~~~rs-------n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L  344 (421)
T KOG2671|consen  272 ADFSNPPLRS-------NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL  344 (421)
T ss_pred             ecccCcchhh-------cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence            7777765332       347999999987310               0       0112234444556668899999999


Q ss_pred             cCCCEEEEe
Q psy1489         175 KPGADCLIK  183 (229)
Q Consensus       175 kpgG~~v~~  183 (229)
                      ..||++++-
T Consensus       345 ~~ggrlv~w  353 (421)
T KOG2671|consen  345 VDGGRLVFW  353 (421)
T ss_pred             hcCceEEEe
Confidence            999999864

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.69  E-value=0.0085  Score=50.59  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+.||+|+|--..     ...|.    .....++...+..|+|||.|++
T Consensus       200 ~~~fD~IfCRNVL-----IYFd~----~~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         200 LGKFDLIFCRNVL-----IYFDE----ETQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             cCCCCEEEEcceE-----EeeCH----HHHHHHHHHHHHHhCCCCEEEE
Confidence            4679999993221     11222    3456788889999999999986

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.66  E-value=0.006  Score=52.42  Aligned_cols=74  Identities=22%  Similarity=0.361  Sum_probs=53.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +++|..++|.=+|-|+.|..+++.++         .++|+|+|.++..         . ..++.++ ++++.+..  ..+
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~---------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i-~~nF~~l~--~~l   85 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLG---------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLI-HDNFANFF--EHL   85 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCC---------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEE-eCCHHHHH--HHH
Confidence            46788999999999999999998873         4899999999721         1 1357788 88777632  111


Q ss_pred             HHHhCCCCccEEEeCCC
Q psy1489         129 VTILKDDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~  145 (229)
                       ......++|.|+.|..
T Consensus        86 -~~~~~~~vDgIl~DLG  101 (305)
T TIGR00006        86 -DELLVTKIDGILVDLG  101 (305)
T ss_pred             -HhcCCCcccEEEEecc
Confidence             1123457999999864

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK10742 putative methyltransferase; Provisional

Probab=96.60  E-value=0.014  Score=48.67  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=47.2

Q ss_pred             cCCCC--eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------C----------C-CCCeEEec
Q psy1489          59 LRPGL--KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------P----------I-DGAVVLSK  116 (229)
Q Consensus        59 ~~~g~--~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~----------~-~~~~~~~~  116 (229)
                      +++|.  +|||+-+|.|..+..++.+ |          +.|+++|.++..         .          + .+++++ .
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~-G----------~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~-~  151 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASV-G----------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI-H  151 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHc-C----------CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE-e
Confidence            45677  8999999999999999976 3          579999999720         1          0 123344 4


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      +|..+     .+.. . ...||+|+.|++.
T Consensus       152 ~da~~-----~L~~-~-~~~fDVVYlDPMf  174 (250)
T PRK10742        152 ASSLT-----ALTD-I-TPRPQVVYLDPMF  174 (250)
T ss_pred             CcHHH-----HHhh-C-CCCCcEEEECCCC
Confidence            44322     2332 2 3379999999875

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.57  E-value=0.013  Score=42.98  Aligned_cols=93  Identities=23%  Similarity=0.309  Sum_probs=55.2

Q ss_pred             eEeecCCCCchHHHHHHHHhccCCCCCCCC-cEEEEEeCCC-CCC-----C--CC---CeEEecCCCCChhHHHHHHHHh
Q psy1489          65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPK-GLVLSVDKLP-IYP-----I--DG---AVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~-~~v~gvD~~~-~~~-----~--~~---~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++|+|||+|..+ .++...         +. ..++|+|+++ +..     .  ..   +.+. ..|....      ...+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~  114 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLG---------GRGAYVVGVDLSPEMLALARARAEGAGLGLVDFV-VADALGG------VLPF  114 (257)
T ss_pred             eEEecCCcCHHH-HHHHhC---------CCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEE-EeccccC------CCCC
Confidence            999999999987 444433         22 3889999986 110     0  11   3444 4554431      0013


Q ss_pred             CC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .. ..||++.+....     ...+       ....+..+.+.|+|+|.+++....
T Consensus       115 ~~~~~~d~~~~~~~~-----~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         115 EDSASFDLVISLLVL-----HLLP-------PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             CCCCceeEEeeeeeh-----hcCC-------HHHHHHHHHHhcCCCcEEEEEecc
Confidence            33 378998332211     0011       346778899999999999887654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.56  E-value=0.0023  Score=51.10  Aligned_cols=91  Identities=22%  Similarity=0.240  Sum_probs=54.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCC------CC--CeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPI------DG--AVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~------~~--~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|++|||+|+|+|--++..+..          ++..|++.|+.|  +..+      .+  +.+. ..|+.          
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a----------GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~-~~d~~----------  137 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA----------GAAEVVAADIDPWLEQAIRLNAAANGVSILFT-HADLI----------  137 (218)
T ss_pred             ccceeeecccccChHHHHHHHh----------hhHHHHhcCCChHHHHHhhcchhhccceeEEe-ecccc----------
Confidence            5899999999999988886654          346788888876  2211      12  2333 33322          


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                       ..+..||+|+..--.       .++.    .....+. +.+.|+..|.-|+ +++
T Consensus       138 -g~~~~~Dl~LagDlf-------y~~~----~a~~l~~-~~~~l~~~g~~vl-vgd  179 (218)
T COG3897         138 -GSPPAFDLLLAGDLF-------YNHT----EADRLIP-WKDRLAEAGAAVL-VGD  179 (218)
T ss_pred             -CCCcceeEEEeecee-------cCch----HHHHHHH-HHHHHHhCCCEEE-EeC
Confidence             235679999973211       1221    1223344 6666777777666 444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.52  E-value=0.011  Score=49.73  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             CeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCC--CeEEecCCCCChhHHH---
Q psy1489          63 LKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDG--AVVLSKCDFTQPDIQD---  126 (229)
Q Consensus        63 ~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~--~~~~~~~D~~~~~~~~---  126 (229)
                      ..+||||||=  -+..-.+++...        |.++|+=||..|+         ...++  ..++ ++|+++++..-   
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~--------P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v-~aD~r~p~~iL~~p  140 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVA--------PDARVVYVDNDPVVLAHARALLADNPRGRTAYV-QADLRDPEAILAHP  140 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH---------TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEE-E--TT-HHHHHCSH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhC--------CCceEEEECCCchHHHHHHhhhcCCCCccEEEE-eCCCCCHHHHhcCH
Confidence            6799999995  234455677766        8899999999983         12344  6788 99999976432   


Q ss_pred             HHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         127 RLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       127 ~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      .....++ ++.+-+++.......   .+.      +....++....+.|.||..+++......
T Consensus       141 ~~~~~lD~~rPVavll~~vLh~v---~D~------~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  141 EVRGLLDFDRPVAVLLVAVLHFV---PDD------DDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             HHHCC--TTS--EEEECT-GGGS----CG------CTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             HHHhcCCCCCCeeeeeeeeeccC---CCc------cCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            2222332 345555555432211   111      1245678889999999999999887654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.45  E-value=0.0038  Score=47.48  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+...|+|+|||-|.++..++..+..     ..+..+|+|||.++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~-----~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCN-----SSPNLRVLGIDCNE   63 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHh-----cCCCCeEEEEECCc
Confidence            46789999999999999999984420     01457999999987

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.41  E-value=0.0031  Score=47.55  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=28.0

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .|+|+|||.|.++..+++..         +.++|+++|.++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~---------~~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG---------AEGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC---------CCCEEEEEecCH
Confidence            48999999999999988764         556999999997

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG3115|consensus

Probab=96.35  E-value=0.012  Score=47.47  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL  103 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~  103 (229)
                      -.+.|||||-|++...|+...         |+.-++|.+|.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f---------PdtLiLGmEIR   93 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKF---------PDTLILGMEIR   93 (249)
T ss_pred             ceEEeeccCccchhhhccccC---------ccceeeeehhh
Confidence            468999999999999998876         78899999986

>KOG3987|consensus

Probab=96.33  E-value=0.0008  Score=54.19  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-C--CCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-I--DGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~--~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ..++||||+|-|.++..++....           +|+|.++|. |.. +  .+..+++..++.           -.+-++
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~fe-----------evyATElS~tMr~rL~kk~ynVl~~~ew~-----------~t~~k~  170 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFE-----------EVYATELSWTMRDRLKKKNYNVLTEIEWL-----------QTDVKL  170 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHH-----------HHHHHHhhHHHHHHHhhcCCceeeehhhh-----------hcCcee
Confidence            47999999999999999887763           688888886 421 1  122222111111           124468


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC-CCEEEEee
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP-GADCLIKI  184 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~~v~~~  184 (229)
                      |+|.|--           -..........|.-++.+|+| +|++|+..
T Consensus       171 dli~clN-----------lLDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  171 DLILCLN-----------LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             ehHHHHH-----------HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            9888711           111122234667778889999 79887653

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.29  E-value=0.0034  Score=51.11  Aligned_cols=94  Identities=17%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------C-CCC-CeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------P-IDG-AVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~-~~~-~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ..+.||.|||-|..|..++..+          -.+|--||..+  ..       . ... ..+. +..+.         +
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~----------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~-~~gLQ---------~  115 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV----------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFY-CVGLQ---------D  115 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-----------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEE-ES-GG---------G
T ss_pred             cceEEecccccchhHHHHHHHh----------cCEeEEeccCHHHHHHHHHHhcccCCCcceEE-ecCHh---------h
Confidence            4799999999999998765332          13777788765  10       0 111 1222 22222         2


Q ss_pred             HhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +.| +.+||+|++-        |..-|+.. +.+...|..+...|+|+|.+++|.
T Consensus       116 f~P~~~~YDlIW~Q--------W~lghLTD-~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  116 FTPEEGKYDLIWIQ--------WCLGHLTD-EDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             ----TT-EEEEEEE--------S-GGGS-H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCcEeEEEeh--------HhhccCCH-HHHHHHHHHHHHhCcCCcEEEEEe
Confidence            233 3689999992        22323222 344578889999999999999985

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.80  E-value=0.037  Score=50.97  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCC-------------
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQ-------------  121 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~-------------  121 (229)
                      .++.+|+-+|||+ |..+...++.+|          +.|+++|.++.  +  ..-++++. .-|..+             
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG----------A~V~a~D~~~~rle~aeslGA~~v-~i~~~e~~~~~~gya~~~s  231 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG----------AIVRAFDTRPEVAEQVESMGAEFL-ELDFEEEGGSGDGYAKVMS  231 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHcCCeEE-Eeccccccccccchhhhcc
Confidence            3689999999999 667777787765          48999999861  1  11244433 222211             


Q ss_pred             hhHHHHHHHHhCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         122 PDIQDRLVTILKD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       122 ~~~~~~i~~~~~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+...+.+.+  ..+|+|+.-..     ......      ...+.+++.+.+||||.++.--
T Consensus       232 ~~~~~~~~~~~~~~~~gaDVVIetag-----~pg~~a------P~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        232 EEFIKAEMALFAEQAKEVDIIITTAL-----IPGKPA------PKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             hhHHHHHHHHHHhccCCCCEEEECCC-----CCcccC------cchHHHHHHHhcCCCCEEEEEc
Confidence            1111112222222  46999998442     211100      0112467889999999987543

>KOG1709|consensus

Probab=95.79  E-value=0.049  Score=44.35  Aligned_cols=95  Identities=16%  Similarity=0.200  Sum_probs=62.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CC-----CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IY-----PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~-----~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..+|.+||.+|-|-|.....+-++-         |.-+. -|+..|     |.     ..+++.++ .+-+.+      .
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~---------p~~H~-IiE~hp~V~krmr~~gw~ek~nViil-~g~WeD------v  161 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAP---------PDEHW-IIEAHPDVLKRMRDWGWREKENVIIL-EGRWED------V  161 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcC---------CcceE-EEecCHHHHHHHHhcccccccceEEE-ecchHh------h
Confidence            3579999999999998777655442         44444 355554     11     12456666 565544      3


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                      ...++++.||-|+-|.-.           ...+......+-+.++|||+|.|-
T Consensus       162 l~~L~d~~FDGI~yDTy~-----------e~yEdl~~~hqh~~rLLkP~gv~S  203 (271)
T KOG1709|consen  162 LNTLPDKHFDGIYYDTYS-----------ELYEDLRHFHQHVVRLLKPEGVFS  203 (271)
T ss_pred             hccccccCcceeEeechh-----------hHHHHHHHHHHHHhhhcCCCceEE
Confidence            334778899999997631           222344556667999999999874

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.72  E-value=0.085  Score=46.71  Aligned_cols=113  Identities=21%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCCCCCeEEecCCCCCh-hHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPIDGAVVLSKCDFTQP-DIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~~~~~~~~~~D~~~~-~~~~~i~~~  131 (229)
                      +.+|.+||.+|||+ |..+..+++..+         ..+|+++|.++ .    ....++.++   +..+. .....+...
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g---------~~~vi~~~~~~~~~~~~~~~~~~~vi---~~~~~~~~~~~l~~~  249 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLG---------AERVIAIDRVPERLEMARSHLGAETI---NFEEVDDVVEALREL  249 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCcEEE---cCCcchHHHHHHHHH
Confidence            46789999999988 778888888763         34699999876 1    111133333   22222 233445554


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcc---cH-HHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREM---DH-DLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~---d~-~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+|+.............   .+ +.........+..+.+.|+++|++++.
T Consensus       250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            55557999987331100000000   00 000000124567788899999999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.68  E-value=0.07  Score=46.63  Aligned_cols=97  Identities=15%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|||+ |..+..+++..+         ..+|+++|.++..    .--++. ++   |..+.+....+....
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G---------~~~Vi~~~~~~~~~~~~~~~Ga~~~i---~~~~~~~~~~i~~~~  241 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAG---------ASKIIAVDIDDRKLEWAREFGATHTV---NSSGTDPVEAIRALT  241 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCceEE---cCCCcCHHHHHHHHh
Confidence            56799999999866 555566666543         2359999887611    111222 22   223333344455444


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+|+|+--.     |.            ...+..+.+.|++||++++.-
T Consensus       242 ~~~g~d~vid~~-----g~------------~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       242 GGFGADVVIDAV-----GR------------PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CCCCCCEEEECC-----CC------------HHHHHHHHHHhccCCEEEEEC
Confidence            455799998622     21            123455778899999998643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG3178|consensus

Probab=95.64  E-value=0.039  Score=47.89  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C----CCC-CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I----YPI-DGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~----~~~-~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      -...+|+|.|.|..+..+..+.         |  +|-+++...  .    ..+ ++++.+ .+|..+.         .| 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f---------p--~ik~infdlp~v~~~a~~~~~gV~~v-~gdmfq~---------~P-  235 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY---------P--HIKGINFDLPFVLAAAPYLAPGVEHV-AGDMFQD---------TP-  235 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC---------C--CCceeecCHHHHHhhhhhhcCCccee-ccccccc---------CC-
Confidence            3789999999999998888865         3  455555542  1    123 667777 7776652         33 


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       +-|+|+.-=   +.+.+      .-+.|.++|+.+..-|+|||.++++..
T Consensus       236 -~~daI~mkW---iLhdw------tDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  236 -KGDAIWMKW---ILHDW------TDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             -CcCeEEEEe---ecccC------ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence             346888711   11222      224578999999999999999998754

>KOG2730|consensus

Probab=95.62  E-value=0.019  Score=46.84  Aligned_cols=70  Identities=16%  Similarity=0.086  Sum_probs=48.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----C-------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----Y-------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~-------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .-..|+|.-||-||-+...+.+.           ..|++||++|.    .       .+ ..++++ +||+.+.-.-.+ 
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~-----------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI-~GD~ld~~~~lq-  160 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQG-----------PYVIAIDIDPVKIACARHNAEVYGVPDRITFI-CGDFLDLASKLK-  160 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhC-----------CeEEEEeccHHHHHHHhccceeecCCceeEEE-echHHHHHHHHh-
Confidence            34689999999999888888764           59999999982    1       12 258899 999887432111 


Q ss_pred             HHHhCCCCccEEEeCCCC
Q psy1489         129 VTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~  146 (229)
                         +....+|+|+..+++
T Consensus       161 ---~~K~~~~~vf~sppw  175 (263)
T KOG2730|consen  161 ---ADKIKYDCVFLSPPW  175 (263)
T ss_pred             ---hhhheeeeeecCCCC
Confidence               223347888886654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.46  E-value=0.077  Score=46.85  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCC---------------------------------CCCCcEEEEEeCCC-C
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDS---------------------------------KQPKGLVLSVDKLP-I  105 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~---------------------------------~~~~~~v~gvD~~~-~  105 (229)
                      +++..++|-=||+|.+.+.+|.... + -+|                                 .+.. .++|+|+++ +
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~-n-iAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~-~~~G~Did~r~  266 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAA-N-IAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP-IIYGSDIDPRH  266 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhcc-c-cCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc-eEEEecCCHHH
Confidence            3567899999999999999886541 0 000                                 0011 577999997 2


Q ss_pred             C----------CCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc
Q psy1489         106 Y----------PID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS  174 (229)
Q Consensus       106 ~----------~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L  174 (229)
                      .          .+. -++|. ++|+++.      ...+  +.+|+|+||++-   |.+-.++.....+-......+.+.+
T Consensus       267 i~~Ak~NA~~AGv~d~I~f~-~~d~~~l------~~~~--~~~gvvI~NPPY---GeRlg~~~~v~~LY~~fg~~lk~~~  334 (381)
T COG0116         267 IEGAKANARAAGVGDLIEFK-QADATDL------KEPL--EEYGVVISNPPY---GERLGSEALVAKLYREFGRTLKRLL  334 (381)
T ss_pred             HHHHHHHHHhcCCCceEEEE-EcchhhC------CCCC--CcCCEEEeCCCc---chhcCChhhHHHHHHHHHHHHHHHh
Confidence            1          122 36777 8988772      2212  589999999864   5554444222225556666777888


Q ss_pred             cCCCEEEEe
Q psy1489         175 KPGADCLIK  183 (229)
Q Consensus       175 kpgG~~v~~  183 (229)
                      +.-+.+|+.
T Consensus       335 ~~ws~~v~t  343 (381)
T COG0116         335 AGWSRYVFT  343 (381)
T ss_pred             cCCceEEEE
Confidence            777777663

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.40  E-value=0.061  Score=46.89  Aligned_cols=92  Identities=17%  Similarity=0.233  Sum_probs=56.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++||++|+-.|+|- |..+..+|+.++          .+|+++|.++-    ..--+++ ++   +..+.+....+.+  
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g----------a~Via~~~~~~K~e~a~~lGAd~~i---~~~~~~~~~~~~~--  228 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG----------AEVIAITRSEEKLELAKKLGADHVI---NSSDSDALEAVKE--  228 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC----------CeEEEEeCChHHHHHHHHhCCcEEE---EcCCchhhHHhHh--
Confidence            46899999999981 334555565543          79999999971    0111232 33   2224333333322  


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                         .||+|+.-.++                  ..+..+.+.|++||++++.-..
T Consensus       229 ---~~d~ii~tv~~------------------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         229 ---IADAIIDTVGP------------------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ---hCcEEEECCCh------------------hhHHHHHHHHhcCCEEEEECCC
Confidence               39999984421                  2456688899999999875443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.29  E-value=0.058  Score=47.30  Aligned_cols=102  Identities=21%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----------------CCCCeEEecCCCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----------------IDGAVVLSKCDFTQ  121 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----------------~~~~~~~~~~D~~~  121 (229)
                      +.-.+||-||-|-|--...+.+.-         ...+|+-||++| |..                 .++++++ ..|..+
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP---------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv-~dDAf~  357 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYP---------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVV-NDDAFQ  357 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCC---------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEE-eccHHH
Confidence            445789999999998877777652         257999999998 321                 1345555 555443


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHH-HHHHHHHHHHHcccCCCEEEEeec
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQ-LAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~-~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           -++.  ..+.||.|+.|..- +      +....-. -.......+.+.|+++|.+++..-
T Consensus       358 -----wlr~--a~~~fD~vIVDl~D-P------~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         358 -----WLRT--AADMFDVVIVDLPD-P------STPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             -----HHHh--hcccccEEEEeCCC-C------CCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence                 1221  24589999998752 1      1111111 123567789999999999998653

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.29  E-value=0.098  Score=45.98  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||=+|+|+ |..+..+++..+         ..+|+++|.++-    ..--++..+  -|..+.+....+.....
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G---------~~~Vi~~~~~~~r~~~a~~~Ga~~~--i~~~~~~~~~~i~~~~~  257 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAG---------ASQVVAVDLNEDKLALARELGATAT--VNAGDPNAVEQVRELTG  257 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCcEEEEcCCHHHHHHHHHcCCceE--eCCCchhHHHHHHHHhC
Confidence            56789999999876 555566666543         236999998761    011122211  12233333444544443


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      + .+|+|+-..     |.            ...+..+.+.|+++|++++.-
T Consensus       258 ~-g~d~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         258 G-GVDYAFEMA-----GS------------VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             C-CCCEEEECC-----CC------------hHHHHHHHHHHhcCCEEEEEc
Confidence            3 799999622     11            124556788899999988643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.19  E-value=0.081  Score=48.62  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      .+..+|.|-+||+|++.....+.++...     ....++|.|+++.           ..++ .+... .+|-...+....
T Consensus       185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~-~~dtl~~~~~~~  258 (489)
T COG0286         185 EPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR-HGDTLSNPKHDD  258 (489)
T ss_pred             CCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc-ccccccCCcccc
Confidence            5678999999999999888888875211     0367899998751           1122 12222 333221111000


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCccc------H----H---HHHHHH-HHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMD------H----D---LITQLA-IAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d------~----~---~~~~~~-~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                         ....+.||.|+++++....+.....      .    .   ..-.-. ...+..+...|+|||+..+.+..
T Consensus       259 ---~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         259 ---KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             ---cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence               1234679999999986422211110      0    0   000011 35677888999999977665543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.94  E-value=0.6  Score=37.50  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC----CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY----PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      ...|++.|..-|+-+...|...-+.|     ...+|+++|++-  ..    ..+++.++ +++-+++.+...+...-.+.
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~G-----q~~kvl~vdIdi~~~~p~a~e~p~i~f~-egss~dpai~eqi~~~~~~y  143 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIG-----QPFKVLGVDIDIKPLDPAAREVPDILFI-EGSSTDPAIAEQIRRLKNEY  143 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcC-----CCceEEEEecccCcCChhhhcCCCeEEE-eCCCCCHHHHHHHHHHhcCC
Confidence            36899999999998888776442111     235899999874  21    25789999 99999998877776543222


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +-=+|+.|.            .++++..++.|+....+|..|-.+++.
T Consensus       144 ~kIfvilDs------------dHs~~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         144 PKIFVILDS------------DHSMEHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             CcEEEEecC------------CchHHHHHHHHHHhhhHhhcCceEEEe
Confidence            212222322            233445667788888888888888765

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.90  E-value=0.14  Score=44.26  Aligned_cols=96  Identities=21%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.+|++||=+|+|+ |.++..+++..+         ..+|+++|.++.  ..  --++..+  -|..+.+ ...+.+...
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G---------~~~vi~~~~~~~~~~~~~~~ga~~~--i~~~~~~-~~~~~~~~~  228 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALG---------AEDVIGVDPSPERLELAKALGADFV--INSGQDD-VQEIRELTS  228 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEE--EcCCcch-HHHHHHHhC
Confidence            45789999998765 445555566543         223899987751  00  0122211  1222322 333444445


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+|+.....                 ...+..+.+.|+++|++++-
T Consensus       229 ~~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         229 GAGADVAIECSGN-----------------TAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            5579999963211                 12345577889999999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.61  E-value=0.018  Score=50.13  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=16.8

Q ss_pred             HHHHHHHcccCCCEEEEeecCCC
Q psy1489         166 VIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       166 ~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      .++....++.|||.+|+..-..+
T Consensus       207 ~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         207 NIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             HHHHHHHhccCCCeEEEEeCCCc
Confidence            45667888999999998654333

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.55  E-value=0.025  Score=43.60  Aligned_cols=47  Identities=13%  Similarity=0.322  Sum_probs=35.3

Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      ..+.++++|+|++        .+.++|+.. +.-..++++++++|||||.+-+.+.
T Consensus        41 ~~F~dns~d~iya--------eHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvP   87 (185)
T COG4627          41 SMFEDNSVDAIYA--------EHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             ccCCCcchHHHHH--------HHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcC
Confidence            3477889999998        344555444 3345789999999999999988764

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.25  E-value=0.18  Score=43.85  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      .++|++||-+|||+ |.++..++++..        ...+|+++|.++ ..++-+... ..+...    +.+   ..+..+
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~--------g~~~vi~~~~~~-~k~~~a~~~-~~~~~~----~~~---~~~~g~  223 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIY--------PESKLVVFGKHQ-EKLDLFSFA-DETYLI----DDI---PEDLAV  223 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhc--------CCCcEEEEeCcH-hHHHHHhhc-Cceeeh----hhh---hhccCC
Confidence            46799999999987 545555565431        235899999876 111111101 111000    011   112258


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      |+|+-..     |-..         ....+..+.+.|++||++++.-
T Consensus       224 d~viD~~-----G~~~---------~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECV-----GGRG---------SQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             cEEEECC-----CCCc---------cHHHHHHHHHhCcCCcEEEEEe
Confidence            9998522     2110         0235667889999999998643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.16  E-value=0.2  Score=42.34  Aligned_cols=33  Identities=21%  Similarity=0.105  Sum_probs=26.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      ...+||-=|||-|.++-.+|.+ |          -.+.|+|.|-
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G----------~~~~gnE~S~   88 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-G----------YAVQGNEFSY   88 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-c----------ceEEEEEchH
Confidence            3578999999999999998876 3          4777888773

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.13  E-value=0.053  Score=46.69  Aligned_cols=75  Identities=24%  Similarity=0.390  Sum_probs=47.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CC----CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YP----IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~----~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++..++|.=.|.||.|..+++..         +.++|+|+|.++.      ..    -.++.++ .+++.+...  .+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~---------~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~-~~~F~~l~~--~l   85 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKL---------PNGRLIGIDRDPEALERAKERLKKFDDRFIFI-HGNFSNLDE--YL   85 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT----------TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEE-ES-GGGHHH--HH
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhC---------CCCeEEEecCCHHHHHHHHHHHhhccceEEEE-eccHHHHHH--HH
Confidence            4678899999999999999999987         4599999999871      11    2467788 888777432  22


Q ss_pred             HHHhCCCCccEEEeCCC
Q psy1489         129 VTILKDDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~  145 (229)
                      .....-..+|.|+.|..
T Consensus        86 ~~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   86 KELNGINKVDGILFDLG  102 (310)
T ss_dssp             HHTTTTS-EEEEEEE-S
T ss_pred             HHccCCCccCEEEEccc
Confidence            22213458999999874

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.04  E-value=0.27  Score=41.99  Aligned_cols=95  Identities=20%  Similarity=0.171  Sum_probs=55.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ++++.+||..|+|+ |..+..+++..+          .+|++++.++-  ..+  .++..+ ..+ .+......+ ....
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G----------~~V~~~~~s~~~~~~~~~~g~~~~-~~~-~~~~~~~~~-~~~~  229 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMG----------AAVIAVDIKEEKLELAKELGADEV-LNS-LDDSPKDKK-AAGL  229 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHhCCCEE-EcC-CCcCHHHHH-HHhc
Confidence            56788999987764 666666676654          57889887751  000  122222 111 121222223 3355


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       230 ~~~~D~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         230 GGGFDVIFDFVGT-----------------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CCCceEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            6789999863211                 13456688999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.93  E-value=0.32  Score=40.93  Aligned_cols=95  Identities=22%  Similarity=0.196  Sum_probs=54.5

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+|++||-+|+|+ |..+..+++..+         ..+|+++|.++..    .--++...  -|..+.  ...+.+...+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G---------~~~Vi~~~~~~~r~~~a~~~Ga~~~--i~~~~~--~~~~~~~~~~  185 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAG---------AARVVAADPSPDRRELALSFGATAL--AEPEVL--AERQGGLQNG  185 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCcEe--cCchhh--HHHHHHHhCC
Confidence            4789999998876 555555666543         2358888877511    01122221  121121  2223333344


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..+|+|+--.     |.            ...+..+.+.|+++|++++.-
T Consensus       186 ~g~d~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       186 RGVDVALEFS-----GA------------TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCCCEEEECC-----CC------------hHHHHHHHHHhcCCCEEEEec
Confidence            5799998732     11            134566888999999998644

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02740 Alcohol dehydrogenase-like

Probab=93.88  E-value=0.48  Score=41.80  Aligned_cols=95  Identities=16%  Similarity=0.194  Sum_probs=54.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++.  .  .--++. ++   |..+  .+....+.+
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G---------~~~Vi~~~~~~~r~~~a~~~Ga~~~i---~~~~~~~~~~~~v~~  263 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARG---------ASKIIGVDINPEKFEKGKEMGITDFI---NPKDSDKPVHERIRE  263 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC---------CCcEEEEcCChHHHHHHHHcCCcEEE---ecccccchHHHHHHH
Confidence            56799999999876 556666666653         236999998761  1  001222 22   2222  122333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ...+ .+|+|+--.     |.            ...+..+...+++| |++++.
T Consensus       264 ~~~~-g~dvvid~~-----G~------------~~~~~~a~~~~~~g~G~~v~~  299 (381)
T PLN02740        264 MTGG-GVDYSFECA-----GN------------VEVLREAFLSTHDGWGLTVLL  299 (381)
T ss_pred             HhCC-CCCEEEECC-----CC------------hHHHHHHHHhhhcCCCEEEEE
Confidence            3333 799998732     21            12455677788897 988764

>PRK08177 short chain dehydrogenase; Provisional

Probab=93.64  E-value=1.6  Score=35.23  Aligned_cols=73  Identities=19%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      +||=.|+ +|+++..+++++..       ...+|++++.++..     ...++.+. ..|+.+.+....+.+.+.++.+|
T Consensus         3 ~vlItG~-sg~iG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~id   73 (225)
T PRK08177          3 TALIIGA-SRGLGLGLVDRLLE-------RGWQVTATVRGPQQDTALQALPGVHIE-KLDMNDPASLDQLLQRLQGQRFD   73 (225)
T ss_pred             EEEEeCC-CchHHHHHHHHHHh-------CCCEEEEEeCCCcchHHHHhccccceE-EcCCCCHHHHHHHHHHhhcCCCC
Confidence            5666666 57777777776642       22489999987621     12356677 89999987666565556556899


Q ss_pred             EEEeCCC
Q psy1489         139 VVLSDMA  145 (229)
Q Consensus       139 ~V~sd~~  145 (229)
                      +|+.+..
T Consensus        74 ~vi~~ag   80 (225)
T PRK08177         74 LLFVNAG   80 (225)
T ss_pred             EEEEcCc
Confidence            9998764

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.63  E-value=0.51  Score=40.91  Aligned_cols=96  Identities=20%  Similarity=0.289  Sum_probs=55.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||-.|+|+ |..+..+++..+         ...|+++|.++.    ..--++..+  -|..+.+....+.....
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~--v~~~~~~~~~~i~~~~~  232 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRG---------AGRIIAVGSRPNRVELAKEYGATDI--VDYKNGDVVEQILKLTG  232 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCceE--ecCCCCCHHHHHHHHhC
Confidence            56789999998765 455555666553         236888888751    001122211  12222233334444455


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +..+|+|+....     .            ...+..+.+.|+++|+++.
T Consensus       233 ~~~~d~vld~~g-----~------------~~~~~~~~~~l~~~G~~v~  264 (351)
T cd08285         233 GKGVDAVIIAGG-----G------------QDTFEQALKVLKPGGTISN  264 (351)
T ss_pred             CCCCcEEEECCC-----C------------HHHHHHHHHHhhcCCEEEE
Confidence            567999996321     0            1245667888999999885

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=93.62  E-value=0.24  Score=42.02  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CeeEeecCCCCchH-HHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------C-----CCCCeEEecCCCCChhHHHHH
Q psy1489          63 LKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------P-----IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        63 ~~VLDlGcGpG~~s-~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~-----~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+|+=|||||==+| +.++++.+        +...|+++|+++-.        .     -.++.++ .+|..+..     
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~--------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~-~~d~~~~~-----  187 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHG--------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFI-TADVLDVT-----  187 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HT--------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEE-ES-GGGG------
T ss_pred             ceEEEEcCCCcchHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEE-ecchhccc-----
Confidence            59999999996555 55555554        45689999999721        1     1356788 88876532     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH-H----hhCCe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI-T----RFYSQ  203 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l-~----~~F~~  203 (229)
                         .+-..||+|+..+..   |.   +.    +.-.+++....+.++||..+++.--.+-  ..+++-. .    .-|+.
T Consensus       188 ---~dl~~~DvV~lAalV---g~---~~----e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl--R~~LYp~vd~~~l~gf~~  252 (276)
T PF03059_consen  188 ---YDLKEYDVVFLAALV---GM---DA----EPKEEILEHLAKHMAPGARLVVRSAHGL--RSFLYPVVDPEDLRGFEV  252 (276)
T ss_dssp             ---GG----SEEEE-TT----S-----------SHHHHHHHHHHHS-TTSEEEEEE--GG--GGGSS----TGGGTTEEE
T ss_pred             ---cccccCCEEEEhhhc---cc---cc----chHHHHHHHHHhhCCCCcEEEEecchhh--HHHcCCCCChHHCCCeEE
Confidence               112479999985532   11   11    1124678889999999999988743322  1111111 1    13777


Q ss_pred             eEEEcCC
Q psy1489         204 VKILKPP  210 (229)
Q Consensus       204 v~~~kp~  210 (229)
                      ..++.|.
T Consensus       253 ~~~~hP~  259 (276)
T PF03059_consen  253 LAVVHPT  259 (276)
T ss_dssp             EEEE---
T ss_pred             EEEECCC
Confidence            7777775

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.56  E-value=0.29  Score=39.32  Aligned_cols=50  Identities=20%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             ccEEEeCCCCCCCCC--------CcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         137 LDVVLSDMAPNATGM--------REMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       137 ~D~V~sd~~~~~~g~--------~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      +|+|+.|++-+....        ...+....+..+...+.++.++|||||.+++.+-.
T Consensus         1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~   58 (231)
T PF01555_consen    1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDD   58 (231)
T ss_dssp             EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred             CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecc
Confidence            488999887543222        11224455667788999999999999999886643

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.46  E-value=0.064  Score=39.47  Aligned_cols=86  Identities=19%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCC
Q psy1489          73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNA  148 (229)
Q Consensus        73 G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~  148 (229)
                      |.++..+++..|          .+|+++|.++-  .  .--++..+  .|..+.+..+.+.+..++..+|+|+--.    
T Consensus         3 G~~a~q~ak~~G----------~~vi~~~~~~~k~~~~~~~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~----   66 (130)
T PF00107_consen    3 GLMAIQLAKAMG----------AKVIATDRSEEKLELAKELGADHV--IDYSDDDFVEQIRELTGGRGVDVVIDCV----   66 (130)
T ss_dssp             HHHHHHHHHHTT----------SEEEEEESSHHHHHHHHHTTESEE--EETTTSSHHHHHHHHTTTSSEEEEEESS----
T ss_pred             HHHHHHHHHHcC----------CEEEEEECCHHHHHHHHhhccccc--ccccccccccccccccccccceEEEEec----
Confidence            567777787763          79999999861  1  11122222  2333444566677777667899999733    


Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         149 TGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       149 ~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                       |.            ...+..+...|+++|++++.-...
T Consensus        67 -g~------------~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   67 -GS------------GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             -SS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             -Cc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence             21            246677889999999998865544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.43  E-value=1.1  Score=34.99  Aligned_cols=56  Identities=18%  Similarity=0.310  Sum_probs=40.1

Q ss_pred             CCCCccEEEeCCCCCCCCCCcc--cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREM--DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~--d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      ....||.|+-+.+....+..+.  +...+.+++...+..|..+|+++|.+.+....+.
T Consensus        72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~  129 (166)
T PF10354_consen   72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ  129 (166)
T ss_pred             cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            5678999999987543222221  1223445778899999999999999998876653

>PLN02827 Alcohol dehydrogenase-like

Probab=93.41  E-value=0.79  Score=40.49  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-.|+|+ |..+..+++..+         ...|+++|.++-  .  .--++. ++   |..+  .+....+.+
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G---------~~~vi~~~~~~~~~~~a~~lGa~~~i---~~~~~~~~~~~~v~~  258 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRG---------ASQIIGVDINPEKAEKAKTFGVTDFI---NPNDLSEPIQQVIKR  258 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHHHcCCcEEE---cccccchHHHHHHHH
Confidence            56799999998866 555555666543         236888887651  0  111232 22   2222  123333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      .... .+|+|+-..     |.            ...+..+.+.|++| |++++.
T Consensus       259 ~~~~-g~d~vid~~-----G~------------~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        259 MTGG-GADYSFECV-----GD------------TGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             HhCC-CCCEEEECC-----CC------------hHHHHHHHHhhccCCCEEEEE
Confidence            4433 799999632     21            12455678889998 999763

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.40  E-value=0.35  Score=41.91  Aligned_cols=94  Identities=19%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+|++||-.|||+ |..+..+++..+         ..+|+++|.++-  .  .--++..+  -|..+.+.. .+..  ..
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G---------~~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~-~~~~--~~  233 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG---------AAEIVCADVSPRSLSLAREMGADKL--VNPQNDDLD-HYKA--EK  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHcCCcEE--ecCCcccHH-HHhc--cC
Confidence            3689999999876 556666666553         237899998761  1  01123221  122222211 1211  12


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +.+|+|+...     |.            ...+..+.+.|++||++++.-
T Consensus       234 g~~D~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        234 GYFDVSFEVS-----GH------------PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CCCCEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEEc
Confidence            3599998732     21            123456788899999998743

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=93.39  E-value=0.49  Score=41.00  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ..+|++||=+|+|+ |..+..+++..+         ...|+++|.++.  .  .--++. ++   |..+.. ...+....
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~Ga~~~i---~~~~~~-~~~~~~~~  224 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALG---------AKSVTAIDINSEKLALAKSLGAMQTF---NSREMS-APQIQSVL  224 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHHHcCCceEe---cCcccC-HHHHHHHh
Confidence            45789999999876 555566666653         234788887651  0  001222 22   211211 22344445


Q ss_pred             CCCCcc-EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLD-VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D-~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+| +|+- ..    |.            ...+..+.+.|++||++++.-
T Consensus       225 ~~~~~d~~v~d-~~----G~------------~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        225 RELRFDQLILE-TA----GV------------PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             cCCCCCeEEEE-CC----CC------------HHHHHHHHHHhhcCCEEEEEc
Confidence            556788 5543 21    21            134566888999999998753

>PRK06398 aldose dehydrogenase; Validated

Probab=93.28  E-value=2.7  Score=34.77  Aligned_cols=76  Identities=9%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      .|+++|-.|+ +|+++..+++.+..       ...+|+.++.++ .....+.++ +.|+.++.....+.+.+.  -+.+|
T Consensus         5 ~gk~vlItGa-s~gIG~~ia~~l~~-------~G~~Vi~~~r~~-~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~~~id   74 (258)
T PRK06398          5 KDKVAIVTGG-SQGIGKAVVNRLKE-------EGSNVINFDIKE-PSYNDVDYF-KVDVSNKEQVIKGIDYVISKYGRID   74 (258)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHH-------CCCeEEEEeCCc-cccCceEEE-EccCCCHHHHHHHHHHHHHHcCCCC
Confidence            3678888885 56677777766642       235888888765 223357778 899999765443332221  14689


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        75 ~li~~Ag~   82 (258)
T PRK06398         75 ILVNNAGI   82 (258)
T ss_pred             EEEECCCC
Confidence            99987653

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.21  E-value=0.41  Score=41.59  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=27.1

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      +++|++||-+|||+ |..+..+++..+          .+|+++|.++
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G----------~~vi~~~~~~  200 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMG----------AAVVAIDIDP  200 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEcCCH
Confidence            46789999999966 666666666653          4789998876

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG1209|consensus

Probab=93.12  E-value=1.8  Score=35.49  Aligned_cols=80  Identities=23%  Similarity=0.267  Sum_probs=54.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC--CCCCCC---CCeEEecCCCCChhHHHHHHH---HhC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL--PIYPID---GAVVLSKCDFTQPDIQDRLVT---ILK  133 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~--~~~~~~---~~~~~~~~D~~~~~~~~~i~~---~~~  133 (229)
                      ...||-.||..|+++-.+++....       ....|++.-.+  +|..+.   ++... .-|+.+++-......   ..+
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~-------~G~~V~AtaR~~e~M~~L~~~~gl~~~-kLDV~~~~~V~~v~~evr~~~   78 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFAR-------NGYLVYATARRLEPMAQLAIQFGLKPY-KLDVSKPEEVVTVSGEVRANP   78 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHh-------CCeEEEEEccccchHhhHHHhhCCeeE-EeccCChHHHHHHHHHHhhCC
Confidence            468999999999999999987652       23578887654  355443   56666 788887653322221   246


Q ss_pred             CCCccEEEeCCCCCCC
Q psy1489         134 DDKLDVVLSDMAPNAT  149 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~  149 (229)
                      +++.|+.+.|+.-.|+
T Consensus        79 ~Gkld~L~NNAG~~C~   94 (289)
T KOG1209|consen   79 DGKLDLLYNNAGQSCT   94 (289)
T ss_pred             CCceEEEEcCCCCCcc
Confidence            7899999998864443

>KOG2360|consensus

Probab=92.98  E-value=0.11  Score=45.62  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=56.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+|.+|+|.||.||.-+.+++....        ..+++.|.|.++-           .....++.. .+|++...+..  
T Consensus       212 ~~g~~v~d~caapg~KTsH~a~i~~--------n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~-~~df~~t~~~~--  280 (413)
T KOG2360|consen  212 RPGSRVIDTCAAPGNKTSHLAAIMR--------NQGKIYAFERDAKRAATLRKLLKIAGVSIVESV-EGDFLNTATPE--  280 (413)
T ss_pred             CCCCceeeeccccccchhhHHHHhh--------ccCCcchhhhhhHHHHHHHHHHHHcCCCccccc-cccccCCCCcc--
Confidence            4689999999999999999998775        5789999999861           112334444 56666521111  


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcc
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREM  154 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~  154 (229)
                          .=..+..|++|.+...+|++..
T Consensus       281 ----~~~~v~~iL~DpscSgSgm~~r  302 (413)
T KOG2360|consen  281 ----KFRDVTYILVDPSCSGSGMVSR  302 (413)
T ss_pred             ----cccceeEEEeCCCCCCCccccc
Confidence                1134678999998877777654

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=92.94  E-value=0.14  Score=51.33  Aligned_cols=92  Identities=21%  Similarity=0.311  Sum_probs=56.3

Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee-cCCCC-hHHHHHHHHhhCCeeEEEc
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI-WDGRN-RPQLEESITRFYSQVKILK  208 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~-~~~~~-~~~~~~~l~~~F~~v~~~k  208 (229)
                      .++.+.|.+|.||.---..|..+.+  ..-+.....+..+..+..+||.+++|+ |.... +..+...+..+|..+.+.|
T Consensus       564 p~pTGtf~fVYSDVDQV~dg~~dl~--As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivK  641 (1289)
T PF06016_consen  564 PFPTGTFTFVYSDVDQVQDGGDDLV--ASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVK  641 (1289)
T ss_dssp             --S---EEEEEEE-----SSTTTHH--HHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEE
T ss_pred             CCCCCceEEEEecchhhccCCcchh--hhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEec
Confidence            3778899999998743222322322  223445577888999999999999998 44433 3445555666789999999


Q ss_pred             CCCCCCCCceEEEEeccC
Q psy1489         209 PPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       209 p~~sr~~s~E~Y~v~~~~  226 (229)
                      |-  -.+|.|.|+|.-+.
T Consensus       642 Pl--I~NNvEvflv~~~~  657 (1289)
T PF06016_consen  642 PL--IVNNVEVFLVFGGR  657 (1289)
T ss_dssp             EE--SSSS--EEEEECEC
T ss_pred             ce--eecceEEEEEEEee
Confidence            84  46899999996554

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>KOG4022|consensus

Probab=92.93  E-value=3.7  Score=32.25  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCC--CCCh--hHHHHHHHHhCCCCcc
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD--FTQP--DIQDRLVTILKDDKLD  138 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D--~~~~--~~~~~i~~~~~~~~~D  138 (229)
                      .+|+-.| |-|.+.....+....       .+.-|..||+++-+....-.++ .+|  +++.  .+..+.-+.+.++++|
T Consensus         4 grVivYG-GkGALGSacv~~Fka-------nnywV~siDl~eNe~Ad~sI~V-~~~~swtEQe~~v~~~vg~sL~gekvD   74 (236)
T KOG4022|consen    4 GRVIVYG-GKGALGSACVEFFKA-------NNYWVLSIDLSENEQADSSILV-DGNKSWTEQEQSVLEQVGSSLQGEKVD   74 (236)
T ss_pred             ceEEEEc-CcchHhHHHHHHHHh-------cCeEEEEEeecccccccceEEe-cCCcchhHHHHHHHHHHHHhhcccccc
Confidence            3566554 778888777776542       3457999999873322211122 222  2221  1223344457789999


Q ss_pred             EEEeCCCCCCCCCCc-ccHHHHHHHH--------HHHHHHHHHcccCCCEEEEe
Q psy1489         139 VVLSDMAPNATGMRE-MDHDLITQLA--------IAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~-~d~~~~~~~~--------~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .|+|-+.-...|.-. .|-....++.        ...-..+..+|||||.+-+.
T Consensus        75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~Lt  128 (236)
T KOG4022|consen   75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLT  128 (236)
T ss_pred             eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeec
Confidence            999966433323211 1211111111        12235577899999998653

>KOG2651|consensus

Probab=92.88  E-value=0.18  Score=44.45  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=30.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      +.+-+.|+|+|+|+|.++..++-.++          -.|.|||-+.
T Consensus       151 f~gi~~vvD~GaG~G~LSr~lSl~y~----------lsV~aIegsq  186 (476)
T KOG2651|consen  151 FTGIDQVVDVGAGQGHLSRFLSLGYG----------LSVKAIEGSQ  186 (476)
T ss_pred             hcCCCeeEEcCCCchHHHHHHhhccC----------ceEEEeccch
Confidence            44557999999999999999987764          5899999984

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.80  E-value=3.4  Score=34.14  Aligned_cols=78  Identities=17%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|+.+|-.|+++ ++++..+++.+..       ...+|+.++.+.-     .    .+..+.++ +.|+.+.+....+.+
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~-------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~   80 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRA-------LGAELAVTYLNDKARPYVEPLAEELDAPIFL-PLDVREPGQLEAVFA   80 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-------cCCEEEEEeCChhhHHHHHHHHHhhccceEE-ecCcCCHHHHHHHHH
Confidence            478899999998 4888888877642       2247777776631     0    12234567 899998765544333


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+..|+++.++..
T Consensus        81 ~~~~~~g~ld~lv~nAg~   98 (258)
T PRK07533         81 RIAEEWGRLDFLLHSIAF   98 (258)
T ss_pred             HHHHHcCCCCEEEEcCcc
Confidence            221  1478999998753

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.73  E-value=0.7  Score=41.28  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCC-C------CCeEEecCCCCC-hh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPI-D------GAVVLSKCDFTQ-PD  123 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~-~------~~~~~~~~D~~~-~~  123 (229)
                      +++|++||=+| +|+ |..+..+++..+.       ...+|+++|.++.     ..+ .      ++... .-|..+ .+
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~-------g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~-~i~~~~~~~  244 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPI-------GPSLLVVTDVNDERLARAQRLFPPEAASRGIELL-YVNPATIDD  244 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhccc-------CCceEEEEcCCHHHHHHHHHhccccccccCceEE-EECCCcccc
Confidence            46789999997 576 6666666766420       1237999998751     111 0      33211 112222 22


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+.+...+..+|+|+....     .            ...+..+.+.|+++|.+++.
T Consensus       245 ~~~~v~~~t~g~g~D~vid~~g-----~------------~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         245 LHATLMELTGGQGFDDVFVFVP-----V------------PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHHHHHhCCCCCCEEEEcCC-----C------------HHHHHHHHHHhccCCeEEEE
Confidence            3333444445567999887321     0            13456678889999987653

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.63  E-value=1.1  Score=36.66  Aligned_cols=97  Identities=23%  Similarity=0.312  Sum_probs=54.9

Q ss_pred             CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH
Q psy1489          57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ..+.++.+||..|+|+ |.....+++..+          .+|++++.++-  ..+  .+...+  -|..+......+. .
T Consensus       130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~-~  196 (271)
T cd05188         130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG----------ARVIVTDRSDEKLELAKELGADHV--IDYKEEDLEEELR-L  196 (271)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEcCCHHHHHHHHHhCCcee--ccCCcCCHHHHHH-H
Confidence            3346789999999987 444455555442          68899988751  000  111111  1222222222232 3


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .....+|+|+.....         .        ..+..+.+.|+++|+++.-
T Consensus       197 ~~~~~~d~vi~~~~~---------~--------~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         197 TGGGGADVVIDAVGG---------P--------ETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             hcCCCCCEEEECCCC---------H--------HHHHHHHHhcccCCEEEEE
Confidence            445679999974321         0        2344567788999999863

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.62  E-value=1.4  Score=36.09  Aligned_cols=111  Identities=12%  Similarity=0.008  Sum_probs=57.6

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------------------------------
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------------------------------  106 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------------------------------  106 (229)
                      .-++-|=|||.|.+...+.-..+.       .-..|+|.|+++ +.                                  
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~-------~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~  124 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRR-------RLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSH  124 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGG-------GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhH-------HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchH
Confidence            458899999999988777654320       124799999985 10                                  


Q ss_pred             ------------------CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH
Q psy1489         107 ------------------PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR  168 (229)
Q Consensus       107 ------------------~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~  168 (229)
                                        ...-.... +.|++++.......   .....|+|+.|.+-.-.-.|..+  ..-.-....|.
T Consensus       125 ~eAl~sA~RL~~~l~~~g~~~p~~~~-~aDvf~~~~~~~~~---~~~~~diViTDlPYG~~t~W~g~--~~~~p~~~ml~  198 (246)
T PF11599_consen  125 AEALESADRLRERLAAEGGDEPHAIF-RADVFDPSPLAVLD---AGFTPDIVITDLPYGEMTSWQGE--GSGGPVAQMLN  198 (246)
T ss_dssp             HHHHHHHHHHHHHHHHTTSS--EEEE-E--TT-HHHHHHHH---TT---SEEEEE--CCCSSSTTS-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchhhe-eecccCCchhhhhc---cCCCCCEEEecCCCcccccccCC--CCCCcHHHHHH
Confidence                              00112355 88999987655443   23457999999875222222221  22233456778


Q ss_pred             HHHHcccCCCEEEEeecC
Q psy1489         169 FAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       169 ~~~~~LkpgG~~v~~~~~  186 (229)
                      ....+| |+..+|+....
T Consensus       199 ~l~~vL-p~~sVV~v~~k  215 (246)
T PF11599_consen  199 SLAPVL-PERSVVAVSDK  215 (246)
T ss_dssp             HHHCCS--TT-EEEEEES
T ss_pred             HHHhhC-CCCcEEEEecC
Confidence            888999 66666654433

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2352|consensus

Probab=92.57  E-value=0.7  Score=42.02  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=67.7

Q ss_pred             CCCC-eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C-----CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGL-KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y-----PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~-~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~-----~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+-. ++|-+|||-=.++..+-+-          +-..|+-+|+|+.     .     ..+...+. ..|++..      
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~----------G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~-~~d~~~l------  108 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKN----------GFEDITNIDSSSVVVAAMQVRNAKERPEMQMV-EMDMDQL------  108 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhc----------CCCCceeccccHHHHHHHHhccccCCcceEEE-Eecchhc------
Confidence            3444 8999999988776664432          2347999999972     1     12334555 6776653      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                        .+++++||+|+.-+..+..-..+.+.+. ......-+.+..++|++||+++...+
T Consensus       109 --~fedESFdiVIdkGtlDal~~de~a~~~-~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  109 --VFEDESFDIVIDKGTLDALFEDEDALLN-TAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             --cCCCcceeEEEecCccccccCCchhhhh-hHHhhHHHhhHHHHhccCCEEEEEEe
Confidence              2778999999986654332211222221 13445678889999999999876554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.43  E-value=0.47  Score=42.68  Aligned_cols=86  Identities=17%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++.-+|++|+-+|||+ |.....+++..|          .+|+.+|.++..    ...++...      ..      .+.
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~G----------a~ViV~d~d~~R~~~A~~~G~~~~------~~------~e~  254 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQG----------ARVIVTEVDPICALQAAMEGYEVM------TM------EEA  254 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEECChhhHHHHHhcCCEEc------cH------HHH
Confidence            4445799999999999 544455555543          589999998721    11233222      11      112


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHH-HHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRF-AVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~-~~~~LkpgG~~v~~  183 (229)
                      +  ..+|+|+..     +|.            ..++.. ..+.+++||.++..
T Consensus       255 v--~~aDVVI~a-----tG~------------~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         255 V--KEGDIFVTT-----TGN------------KDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             H--cCCCEEEEC-----CCC------------HHHHHHHHHhcCCCCcEEEEe
Confidence            2  257999972     231            123333 37789999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.41  E-value=0.71  Score=40.25  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC---CCCCeEEecCCCCC-hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP---IDGAVVLSKCDFTQ-PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~---~~~~~~~~~~D~~~-~~~~~~i~~  130 (229)
                      +++|++||=.|+ |+ |.++..+++..|          .+|++++.++  ...   --++..+  -|..+ .+....+..
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G----------~~Vi~~~~~~~k~~~~~~~lGa~~v--i~~~~~~~~~~~i~~  223 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHG----------CYVVGSAGSSQKVDLLKNKLGFDEA--FNYKEEPDLDAALKR  223 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHhcCCCEE--EECCCcccHHHHHHH
Confidence            568999999998 43 667777777654          5788888765  111   1123221  12221 123333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .. ++.+|+|+...     |             ...+..+.+.|++||++++.
T Consensus       224 ~~-~~gvD~v~d~v-----G-------------~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        224 YF-PEGIDIYFDNV-----G-------------GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HC-CCCcEEEEECC-----C-------------HHHHHHHHHHhccCCEEEEE
Confidence            33 35799999622     1             02345678889999999864

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=92.34  E-value=0.59  Score=35.85  Aligned_cols=99  Identities=15%  Similarity=0.140  Sum_probs=54.0

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---CCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---IDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      .-|||||-|.|.---+|.+.+         |+..|+..|..- ..+   .+.-.++ ++|+.+.  ...+ ..+ +...-
T Consensus        30 G~VlElGLGNGRTydHLRe~~---------p~R~I~vfDR~l~~hp~~~P~~~~~i-lGdi~~t--l~~~-~~~-g~~a~   95 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIF---------PDRRIYVFDRALACHPSSTPPEEDLI-LGDIRET--LPAL-ARF-GAGAA   95 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH-----------SS-EEEEESS--S-GGG---GGGEE-ES-HHHH--HHHH-HHH--S-EE
T ss_pred             CceEEeccCCCccHHHHHHhC---------CCCeEEEEeeecccCCCCCCchHhee-eccHHHH--hHHH-Hhc-CCceE
Confidence            579999999999999999988         678999999753 111   1234566 8887652  2222 223 56678


Q ss_pred             EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ++.+|...   |.++.    .......+-..+..+|.|||.++-
T Consensus        96 laHaD~G~---g~~~~----d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen   96 LAHADIGT---GDKEK----DDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             EEEE-------S-HHH----HHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEeecCC---CCcch----hHHHHHhhhHHHHHHhcCCcEEEe
Confidence            88888743   33222    222233344557789999998874

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=92.22  E-value=0.24  Score=40.19  Aligned_cols=102  Identities=18%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             eEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---------P-IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---------~-~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      |.|+||--|.+..+|++..         ...+++++|+++  +.         . ...+++. .+|-.+.         +
T Consensus         1 vaDIGtDHgyLpi~L~~~~---------~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~r-lgdGL~~---------l   61 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG---------KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVR-LGDGLEV---------L   61 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEE-E-SGGGG----------
T ss_pred             CceeccchhHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEE-ECCcccc---------c
Confidence            6899999999999999874         445899999996  21         1 1246666 6664331         2


Q ss_pred             CCC-CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         133 KDD-KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       133 ~~~-~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      +.+ ..|.|+..++    |     -    .+...+|......++..-.||+.-  ......++..|...
T Consensus        62 ~~~e~~d~ivIAGM----G-----G----~lI~~ILe~~~~~~~~~~~lILqP--~~~~~~LR~~L~~~  115 (205)
T PF04816_consen   62 KPGEDVDTIVIAGM----G-----G----ELIIEILEAGPEKLSSAKRLILQP--NTHAYELRRWLYEN  115 (205)
T ss_dssp             -GGG---EEEEEEE----------H----HHHHHHHHHTGGGGTT--EEEEEE--SS-HHHHHHHHHHT
T ss_pred             CCCCCCCEEEEecC----C-----H----HHHHHHHHhhHHHhccCCeEEEeC--CCChHHHHHHHHHC
Confidence            232 3676664332    1     1    234567777777777667787642  24456777777665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=92.20  E-value=0.9  Score=40.46  Aligned_cols=110  Identities=19%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.+|++||-.|+|+ |..+..+++..+         ...|+.+|.++-    ..--++..+ .. -.+.+....+.+...
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G---------a~~vi~~d~~~~r~~~a~~~Ga~~v-~~-~~~~~~~~~v~~~~~  251 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLG---------AAVVIVGDLNPARLAQARSFGCETV-DL-SKDATLPEQIEQILG  251 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHHHHHcCCeEE-ec-CCcccHHHHHHHHcC
Confidence            46788998888877 555566666653         234666677641    011133322 11 111223333444444


Q ss_pred             CCCccEEEeCCCCCCCCCCccc--HHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         134 DDKLDVVLSDMAPNATGMREMD--HDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d--~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ...+|+|+--.     |....+  +..........+..+.+++++||++++.-
T Consensus       252 ~~g~Dvvid~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       252 EPEVDCAVDCV-----GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             CCCCcEEEECC-----CCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            55799998632     211000  00000111246788899999999998743

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=92.18  E-value=1.4  Score=37.77  Aligned_cols=95  Identities=20%  Similarity=0.344  Sum_probs=53.4

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++++.+||..|+|. |..+..+++..+         ...+++++.++..     ......++   +..+......+....
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g---------~~~v~~~~~~~~~~~~~~~~g~~~vi---~~~~~~~~~~i~~~~  232 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLG---------AARIIAVDSNPERLDLAKEAGATDII---NPKNGDIVEQILELT  232 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHhCCcEEE---cCCcchHHHHHHHHc
Confidence            46789999977643 445555566542         2378888765411     11111222   222333334454445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +++.+|+|+.....                 ...+..+.+.|+++|+++.
T Consensus       233 ~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~  265 (347)
T cd05278         233 GGRGVDCVIEAVGF-----------------EETFEQAVKVVRPGGTIAN  265 (347)
T ss_pred             CCCCCcEEEEccCC-----------------HHHHHHHHHHhhcCCEEEE
Confidence            55679999963211                 0245667788999999875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.15  E-value=0.53  Score=41.28  Aligned_cols=91  Identities=13%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+|+ |.++..+++..+          .+|++++.++-..     --++..+ . +..+.   ..+....
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G----------a~vi~~~~~~~~~~~~~~~~Ga~~v-i-~~~~~---~~~~~~~  245 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFG----------LKVTVISSSSNKEDEAINRLGADSF-L-VSTDP---EKMKAAI  245 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCcchhhhHHHhCCCcEE-E-cCCCH---HHHHhhc
Confidence            46789999999876 666666666654          4788887765111     1133221 1 11221   1233322


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                        +.+|+|+--.     |.            ...+..+.+.|++||++++.
T Consensus       246 --~~~D~vid~~-----g~------------~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        246 --GTMDYIIDTV-----SA------------VHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             --CCCCEEEECC-----CC------------HHHHHHHHHHhcCCcEEEEe
Confidence              2589998622     21            12455678889999998864

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=92.14  E-value=0.11  Score=42.90  Aligned_cols=69  Identities=26%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             cCCCC--eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CC-----CCCeEEec
Q psy1489          59 LRPGL--KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PI-----DGAVVLSK  116 (229)
Q Consensus        59 ~~~g~--~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~-----~~~~~~~~  116 (229)
                      +++|.  +|||.=+|-|.-+..++. +|          ++|++++.+|. .              ..     .+++++ .
T Consensus        71 lk~~~~~~VLDaTaGLG~Da~vlA~-~G----------~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~-~  138 (234)
T PF04445_consen   71 LKPGMRPSVLDATAGLGRDAFVLAS-LG----------CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI-H  138 (234)
T ss_dssp             -BTTB---EEETT-TTSHHHHHHHH-HT------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE-E
T ss_pred             CCCCCCCEEEECCCcchHHHHHHHc-cC----------CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE-c
Confidence            45553  899999999999999885 45          68999999972 1              11     246777 8


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      +|..+.     + . .++.+||+|..|+++
T Consensus       139 ~d~~~~-----L-~-~~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  139 GDALEY-----L-R-QPDNSFDVVYFDPMF  161 (234)
T ss_dssp             S-CCCH-----C-C-CHSS--SEEEE--S-
T ss_pred             CCHHHH-----H-h-hcCCCCCEEEECCCC
Confidence            887762     1 1 336789999999875

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.13  E-value=1  Score=39.00  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|.+||=.|+|+ |..+..+++..+         ..+|++++.++-.    .-.++..+  -|..+.+....+.+...
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G---------~~~v~~~~~~~~~~~~~~~~ga~~~--i~~~~~~~~~~l~~~~~  238 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAG---------ASKIIVSEPSEARRELAEELGATIV--LDPTEVDVVAEVRKLTG  238 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEE--ECCCccCHHHHHHHHhC
Confidence            46789999888643 334444454432         2278888876410    00122221  13333334444555555


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+|+.....                 ...+..+.+.|+++|+++.-
T Consensus       239 ~~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  271 (351)
T cd08233         239 GGGVDVSFDCAGV-----------------QATLDTAIDALRPRGTAVNV  271 (351)
T ss_pred             CCCCCEEEECCCC-----------------HHHHHHHHHhccCCCEEEEE
Confidence            5669999973311                 12345677889999998864

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.03  E-value=1.3  Score=38.81  Aligned_cols=97  Identities=20%  Similarity=0.244  Sum_probs=55.2

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCC--ChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFT--QPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~--~~~~~~~i~~~  131 (229)
                      +++|++||-.|||+ |..+..+|+..+         ..+|+++|.++..    .--++...  -|..  +......+.+.
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G---------~~~Vi~~~~~~~~~~~a~~~Ga~~~--i~~~~~~~~~~~~v~~~  251 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAK---------ASRIIAIDINPAKFELAKKLGATDC--VNPNDYDKPIQEVIVEI  251 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHhCCCeE--EcccccchhHHHHHHHH
Confidence            56799999999876 556666666653         2379999987610    00122211  1222  12223334443


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~  184 (229)
                      .. +.+|+|+--.     |.            ...+..+.+.+++| |++++.-
T Consensus       252 ~~-~g~d~vid~~-----G~------------~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       252 TD-GGVDYSFECI-----GN------------VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             hC-CCCCEEEECC-----CC------------HHHHHHHHHHhhcCCCeEEEEe
Confidence            33 3799998632     11            12455677788886 9987643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK06179 short chain dehydrogenase; Provisional

Probab=92.00  E-value=6.1  Score=32.61  Aligned_cols=76  Identities=18%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCCCCCeEEecCCCCChhHHHHHHHHh--CCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPIDGAVVLSKCDFTQPDIQDRLVTIL--KDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~~~~~~~~~~D~~~~~~~~~i~~~~--~~~~~  137 (229)
                      +..||-.| |+|+++..+++++..       ...+|++++.++  .....+++++ ++|+++.+....+.+..  .-+.+
T Consensus         4 ~~~vlVtG-asg~iG~~~a~~l~~-------~g~~V~~~~r~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~g~~   74 (270)
T PRK06179          4 SKVALVTG-ASSGIGRATAEKLAR-------AGYRVFGTSRNPARAAPIPGVELL-ELDVTDDASVQAAVDEVIARAGRI   74 (270)
T ss_pred             CCEEEEec-CCCHHHHHHHHHHHH-------CCCEEEEEeCChhhccccCCCeeE-EeecCCHHHHHHHHHHHHHhCCCC
Confidence            45788888 467888888877642       235788888775  2334577888 99999976544333221  12468


Q ss_pred             cEEEeCCCC
Q psy1489         138 DVVLSDMAP  146 (229)
Q Consensus       138 D~V~sd~~~  146 (229)
                      |+++.+...
T Consensus        75 d~li~~ag~   83 (270)
T PRK06179         75 DVLVNNAGV   83 (270)
T ss_pred             CEEEECCCC
Confidence            999998764

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=92.00  E-value=0.96  Score=35.29  Aligned_cols=113  Identities=15%  Similarity=0.064  Sum_probs=58.3

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL  141 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~  141 (229)
                      |++++-+|.. =-|...+|-..         ++.+|+.||.+++.--+..+-. ...+...+....... . .++||.+.
T Consensus         2 ~~~g~V~GS~-~PwvEv~aL~~---------GA~~iltveyn~L~i~~~~~dr-~ssi~p~df~~~~~~-y-~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSM-QPWVEVMALQH---------GAAKILTVEYNKLEIQEEFRDR-LSSILPVDFAKNWQK-Y-AGSFDFAA   68 (177)
T ss_pred             CceEEEEecC-CchhhHHHHHc---------CCceEEEEeecccccCcccccc-cccccHHHHHHHHHH-h-hccchhhh
Confidence            5677888877 34666666555         4578999998763211111000 111111122211211 1 45799988


Q ss_pred             eCCCCCCCCC-CcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         142 SDMAPNATGM-REMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       142 sd~~~~~~g~-~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      |-.+..-.|. +..|+...... ...+..+.++|||||.|.+.+.-+.
T Consensus        69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCC
Confidence            7444322221 11111111111 2456778899999999998775443

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=91.96  E-value=0.27  Score=41.67  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=43.7

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      +|+||.||.|+++..+... |         -..|.++|+++.      ...+.. .+ .+|+.+....+     + ...+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G---------~~~v~a~e~~~~a~~~~~~N~~~~-~~-~~Di~~~~~~~-----~-~~~~   63 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G---------FEIVAANEIDKSAAETYEANFPNK-LI-EGDITKIDEKD-----F-IPDI   63 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C---------CEEEEEEeCCHHHHHHHHHhCCCC-Cc-cCccccCchhh-----c-CCCC
Confidence            6999999999998886653 2         247889999872      122332 44 67887743211     1 3469


Q ss_pred             cEEEeCCCC
Q psy1489         138 DVVLSDMAP  146 (229)
Q Consensus       138 D~V~sd~~~  146 (229)
                      |+++.+.++
T Consensus        64 D~l~~gpPC   72 (275)
T cd00315          64 DLLTGGFPC   72 (275)
T ss_pred             CEEEeCCCC
Confidence            999998764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.78  E-value=0.58  Score=40.44  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=25.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      +++|++||-.|+|+ |..+..+++..+          .+|++++.++
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G----------~~vi~~~~~~  199 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQG----------ATVHVMTRGA  199 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCC----------CeEEEEeCCh
Confidence            56899999999865 444455555543          4788998876

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.77  E-value=0.42  Score=41.64  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCC---C--CC--CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL---P--IY--PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~---~--~~--~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++|.+||-+|+|+ |.++..+++..+          .+|++++.+   +  ..  .--++..+   +..+.+..+ ..  
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G----------~~vi~~~~~~~~~~~~~~~~~~Ga~~v---~~~~~~~~~-~~--  234 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRG----------FEVYVLNRRDPPDPKADIVEELGATYV---NSSKTPVAE-VK--  234 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEecCCCCHHHHHHHHHcCCEEe---cCCccchhh-hh--
Confidence            5789999999876 666666666653          489999873   2  00  01133333   222211111 11  


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ....+|+|+--.     |.            ...+..+.+.|++||++++.-
T Consensus       235 -~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         235 -LVGEFDLIIEAT-----GV------------PPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             -hcCCCCEEEECc-----CC------------HHHHHHHHHHccCCcEEEEEe
Confidence             134699999732     21            124566888899999987643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.61  E-value=0.86  Score=39.00  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=52.7

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCCh-hHHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQP-DIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~-~~~~~i~~~  131 (229)
                      +++|++||=.|+ |+ |..+..+++..|          .+|++++.++-  ..+  -++..+  -|..+. .....+.. 
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G----------~~Vi~~~~s~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~-  202 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKG----------CKVVGAAGSDEKVAYLKKLGFDVA--FNYKTVKSLEETLKK-  202 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCEE--EeccccccHHHHHHH-
Confidence            568999999885 33 666666676653          57888887651  101  122211  111221 12222222 


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..++.+|+|+...     |.             ..+..+.+.|+++|++++.
T Consensus       203 ~~~~gvdvv~d~~-----G~-------------~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       203 ASPDGYDCYFDNV-----GG-------------EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             hCCCCeEEEEECC-----CH-------------HHHHHHHHHhCcCcEEEEe
Confidence            3345799999622     10             1235578889999999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=91.59  E-value=1.9  Score=37.78  Aligned_cols=96  Identities=22%  Similarity=0.246  Sum_probs=54.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCe-EEecCCCCCh--hHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAV-VLSKCDFTQP--DIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~-~~~~~D~~~~--~~~~~i~~  130 (229)
                      +++|++||=+|+|+ |..+..+++..+         ..+|+++|.++.  ..  --++. ++   |..+.  +....+.+
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G---------~~~vi~~~~~~~~~~~~~~lGa~~~i---~~~~~~~~~~~~v~~  251 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAG---------ASRIIGIDINPDKFELAKKFGATDCV---NPKDHDKPIQQVLVE  251 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCCEEE---cccccchHHHHHHHH
Confidence            56799999998765 445555565543         237999998761  10  01222 22   22221  23333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~  184 (229)
                      ... +.+|+|+--.     |.            ...+..+.+.|+++ |++++.-
T Consensus       252 ~~~-~g~d~vid~~-----g~------------~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         252 MTD-GGVDYTFECI-----GN------------VKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             HhC-CCCcEEEECC-----CC------------hHHHHHHHHhhccCCCeEEEEc
Confidence            333 4799999722     21            12455677889887 9988643

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.54  E-value=6.3  Score=32.53  Aligned_cols=78  Identities=19%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PI-DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~-~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|-.|+| +++++..+++.+..       ...+|+.++.+. ..       .+ ..+.++ +.|+.+.+....+.+
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~-------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~i~~~~~   77 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQE-------QGAEVVLTGFGRALRLTERIAKRLPEPAPVL-ELDVTNEEHLASLAD   77 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHH-------CCCEEEEecCccchhHHHHHHHhcCCCCcEE-eCCCCCHHHHHHHHH
Confidence            36789999996 68888888877642       234787777543 11       11 135677 899999865544433


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      ...  -+.+|+++.++..
T Consensus        78 ~~~~~~g~iD~li~nAG~   95 (256)
T PRK07889         78 RVREHVDGLDGVVHSIGF   95 (256)
T ss_pred             HHHHHcCCCcEEEEcccc
Confidence            221  2579999998754

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.42  E-value=0.28  Score=35.64  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHcccCCCEEEEee
Q psy1489         163 AIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       163 ~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +...++.+.+.|+|||.||++-
T Consensus        23 l~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen   23 LKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE-
T ss_pred             HHHHHHHHHHhhCCCCEEEEeC
Confidence            3467888999999999999975

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.99  E-value=1.8  Score=37.79  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++.  .  .--++. ++   |..+  ......+.+
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G---------~~~Vi~~~~~~~~~~~~~~~ga~~~i---~~~~~~~~~~~~~~~  249 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAG---------ASRIIGVDINEDKFEKAKEFGATDFI---NPKDSDKPVSEVIRE  249 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCCcEe---ccccccchHHHHHHH
Confidence            56899999998765 445555566543         237999988751  0  001221 22   1111  112233444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ... ..+|+|+.-.     |.            ...+..+.+.|+++ |++++.
T Consensus       250 ~~~-~g~d~vid~~-----g~------------~~~~~~~~~~l~~~~G~~v~~  285 (365)
T cd08277         250 MTG-GGVDYSFECT-----GN------------ADLMNEALESTKLGWGVSVVV  285 (365)
T ss_pred             HhC-CCCCEEEECC-----CC------------hHHHHHHHHhcccCCCEEEEE
Confidence            343 5799999622     11            12455677889886 988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.96  E-value=2.3  Score=38.46  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      -.|++|+-+|+|+ |......++..+          .+|+.+|.++....    .+..+      .+      +.+.+  
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~G----------a~ViV~d~dp~ra~~A~~~G~~v------~~------l~eal--  265 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLG----------ARVIVTEVDPICALQAAMDGFRV------MT------MEEAA--  265 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC----------CEEEEEcCCchhhHHHHhcCCEe------cC------HHHHH--
Confidence            4689999999987 333333333332          58999998873211    12221      11      11222  


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSR  213 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr  213 (229)
                      ..+|+|+...     |..            .++. .....+|+|+.++..- ......++-. |...-....-++|..-+
T Consensus       266 ~~aDVVI~aT-----G~~------------~vI~~~~~~~mK~GailiNvG-~~d~Eid~~~-L~~~~~~~~~v~~~v~~  326 (425)
T PRK05476        266 ELGDIFVTAT-----GNK------------DVITAEHMEAMKDGAILANIG-HFDNEIDVAA-LEELAVKWREIKPQVDE  326 (425)
T ss_pred             hCCCEEEECC-----CCH------------HHHHHHHHhcCCCCCEEEEcC-CCCCccChHH-HhhcCcceeecCCCceE
Confidence            2589998732     211            1232 4677899999877532 2221111111 22221233444564322


Q ss_pred             ---CCCceEEEEeccCC
Q psy1489         214 ---SHSAELFLLGRGFK  227 (229)
Q Consensus       214 ---~~s~E~Y~v~~~~~  227 (229)
                         ++...+|+++.|+.
T Consensus       327 y~~~~g~~i~lLa~Grl  343 (425)
T PRK05476        327 YTLPDGKRIILLAEGRL  343 (425)
T ss_pred             EEeCCCCEEEEEeCCcc
Confidence               34567999998875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.80  E-value=8.1  Score=31.74  Aligned_cols=77  Identities=17%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      .++.+|-.|.+. ++++..+++.+..       ...+|+.++.+. .    ..+  ..+.++ +.|+++.+....+.+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~-------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~~~   77 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKD-------QGATVIYTYQNDRMKKSLQKLVDEEDLLV-ECDVASDESIERAFATI   77 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHH-------CCCEEEEecCchHHHHHHHhhccCceeEE-eCCCCCHHHHHHHHHHH
Confidence            467899999886 6888888877642       234787776542 0    111  246677 89999876544333322


Q ss_pred             C--CCCccEEEeCCC
Q psy1489         133 K--DDKLDVVLSDMA  145 (229)
Q Consensus       133 ~--~~~~D~V~sd~~  145 (229)
                      .  -+.+|+++.++.
T Consensus        78 ~~~~g~iD~lv~nAg   92 (252)
T PRK06079         78 KERVGKIDGIVHAIA   92 (252)
T ss_pred             HHHhCCCCEEEEccc
Confidence            1  157999999875

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=90.75  E-value=1.9  Score=37.01  Aligned_cols=94  Identities=24%  Similarity=0.238  Sum_probs=54.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.+|.+||..|+|. |..+..+++..+          .+|+++..++-  ..+  .++ +++   +..+......+....
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g----------~~v~~~~~s~~~~~~~~~~g~~~v~---~~~~~~~~~~l~~~~  223 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARG----------ARVIVVDIDDERLEFARELGADDTI---NVGDEDVAARLRELT  223 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEECCCHHHHHHHHHhCCCEEe---cCcccCHHHHHHHHh
Confidence            56789999997653 445555566543          57888865541  000  111 222   222333334455555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ++..+|+++.....                 ...+..+.+.|+++|+++.
T Consensus       224 ~~~~vd~vld~~g~-----------------~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         224 DGEGADVVIDATGN-----------------PASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEE
Confidence            56679999983210                 1234567888999999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02494 adenosylhomocysteinase

Probab=90.69  E-value=5.1  Score=36.70  Aligned_cols=127  Identities=19%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCChhHHHHHHHH
Q psy1489          57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++.-.|++|+-+|+|+ |......++..|          .+|+.+|.++....    .+..+.      .      +.+.
T Consensus       249 ~i~LaGKtVvViGyG~IGr~vA~~aka~G----------a~VIV~e~dp~r~~eA~~~G~~vv------~------leEa  306 (477)
T PLN02494        249 DVMIAGKVAVICGYGDVGKGCAAAMKAAG----------ARVIVTEIDPICALQALMEGYQVL------T------LEDV  306 (477)
T ss_pred             CCccCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCchhhHHHHhcCCeec------c------HHHH
Confidence            3334689999999998 433333333332          58999998873211    122211      1      1122


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHH--HHh--hCCeeE
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEES--ITR--FYSQVK  205 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~--l~~--~F~~v~  205 (229)
                      +  ...|+|+..     +|...           .+.......+|+||.++..-...  -+...+.+.  +..  ....+.
T Consensus       307 l--~~ADVVI~t-----TGt~~-----------vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd  368 (477)
T PLN02494        307 V--SEADIFVTT-----TGNKD-----------IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTD  368 (477)
T ss_pred             H--hhCCEEEEC-----CCCcc-----------chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCce
Confidence            2  247999972     22211           11245777899999988643211  234444433  211  123344


Q ss_pred             EEcCCCCCCC-CceEEEEeccCC
Q psy1489         206 ILKPPSSRSH-SAELFLLGRGFK  227 (229)
Q Consensus       206 ~~kp~~sr~~-s~E~Y~v~~~~~  227 (229)
                      .+.-    ++ ...+|+++.|..
T Consensus       369 ~y~~----~d~g~~i~ll~eGrl  387 (477)
T PLN02494        369 RWVF----PDTGSGIIVLAEGRL  387 (477)
T ss_pred             EEEc----CCCCCEEEEEeCCcc
Confidence            4432    33 577999999875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=90.67  E-value=0.69  Score=39.56  Aligned_cols=86  Identities=16%  Similarity=0.099  Sum_probs=49.7

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCC-CCChhHHHHHHHHhCCCCcc
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD-FTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D-~~~~~~~~~i~~~~~~~~~D  138 (229)
                      ++++||-+|||+ |.++..+++..+         ...|+++|..+. .+..+    ..+ +.+..      . .....+|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G---------~~~v~~~~~~~~-rl~~a----~~~~~i~~~------~-~~~~g~D  202 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG---------GSPPAVWETNPR-RRDGA----TGYEVLDPE------K-DPRRDYR  202 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHH-HHHhh----hhccccChh------h-ccCCCCC
Confidence            578899999887 666676777653         235777777651 11111    010 01110      0 0234689


Q ss_pred             EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +|+-..     |.            ...+..+.+.|+++|++++.-
T Consensus       203 vvid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       203 AIYDAS-----GD------------PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             EEEECC-----CC------------HHHHHHHHHhhhcCcEEEEEe
Confidence            998632     21            124556788899999998644

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.50  E-value=1  Score=32.38  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCC
Q psy1489          70 AAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDM  144 (229)
Q Consensus        70 cGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~  144 (229)
                      ||.|.++..+++.+.        ..+ .|+.+|.++-  .  .-.++.++ .+|.+++.+....    .-..+|.|++..
T Consensus         4 ~G~g~~~~~i~~~L~--------~~~~~vvvid~d~~~~~~~~~~~~~~i-~gd~~~~~~l~~a----~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLK--------EGGIDVVVIDRDPERVEELREEGVEVI-YGDATDPEVLERA----GIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHH--------HTTSEEEEEESSHHHHHHHHHTTSEEE-ES-TTSHHHHHHT----TGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHH--------hCCCEEEEEECCcHHHHHHHhcccccc-cccchhhhHHhhc----CccccCEEEEcc
Confidence            566788888888775        335 7999999861  1  12468888 9999998765432    234788888844


Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         145 APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       145 ~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .         +....     ..+....+-+.|...++.....
T Consensus        71 ~---------~d~~n-----~~~~~~~r~~~~~~~ii~~~~~   98 (116)
T PF02254_consen   71 D---------DDEEN-----LLIALLARELNPDIRIIARVND   98 (116)
T ss_dssp             S---------SHHHH-----HHHHHHHHHHTTTSEEEEEESS
T ss_pred             C---------CHHHH-----HHHHHHHHHHCCCCeEEEEECC
Confidence            2         12222     1233345667788888887654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG3201|consensus

Probab=90.48  E-value=0.61  Score=36.47  Aligned_cols=119  Identities=12%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             CCCeeEeecCCCCchH-HHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEE---------ecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVL---------SKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s-~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~---------~~~D~~~~~~~~~i~~  130 (229)
                      .|.+||+||.|-=+++ ..+|...         +...|.-.|-++. .+++++-+         ...-...-.... -..
T Consensus        29 rg~~ilelgggft~laglmia~~a---------~~~~v~ltdgne~-svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqs   97 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKA---------PDSSVWLTDGNEE-SVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQS   97 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeec---------CCceEEEecCCHH-HHHHHHHHHhcccccccceehhhHHHHhh-hHH
Confidence            3689999998864443 4444443         5567777777651 11111000         000000000000 011


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-CCChHHHHHHHHhhC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-GRNRPQLEESITRFY  201 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-~~~~~~~~~~l~~~F  201 (229)
                      ......||+|++.-+.      ..+     +.-....+.+.++|+|.|.-++-... +...+.|..+.....
T Consensus        98 q~eq~tFDiIlaADCl------Ffd-----E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~g  158 (201)
T KOG3201|consen   98 QQEQHTFDIILAADCL------FFD-----EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVG  158 (201)
T ss_pred             HHhhCcccEEEeccch------hHH-----HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhce
Confidence            1234589999984432      111     22345667799999999986543222 345666666665543

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=90.33  E-value=2  Score=36.54  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=53.8

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=.|+ |+ |..+..+++..|          .+|++++.++-  ..+  -++..+  -|..+.+....+....
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G----------~~vi~~~~s~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~~  208 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKG----------CKVIGCAGSDDKVAWLKELGFDAV--FNYKTVSLEEALKEAA  208 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHC
Confidence            568899998884 33 556666676654          57888887651  000  122221  1222333333444433


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                       +..+|+|+.-.     |             ...+..+.+.|+++|+++.
T Consensus       209 -~~gvd~vld~~-----g-------------~~~~~~~~~~l~~~G~iv~  239 (329)
T cd08294         209 -PDGIDCYFDNV-----G-------------GEFSSTVLSHMNDFGRVAV  239 (329)
T ss_pred             -CCCcEEEEECC-----C-------------HHHHHHHHHhhccCCEEEE
Confidence             35799999622     1             0234567888999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG0022|consensus

Probab=90.29  E-value=1  Score=38.93  Aligned_cols=74  Identities=18%  Similarity=0.197  Sum_probs=45.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCC-CeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDG-AVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~-~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|.+|.-+|+|.=+++...-.+..        .+.+++|||+++-  .  .--+ .+++...|..+ .+++.|.+.. 
T Consensus       190 v~~GstvAVfGLG~VGLav~~Gaka~--------GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmT-  259 (375)
T KOG0022|consen  190 VEPGSTVAVFGLGGVGLAVAMGAKAA--------GASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMT-  259 (375)
T ss_pred             cCCCCEEEEEecchHHHHHHHhHHhc--------CcccEEEEecCHHHHHHHHhcCcceecChhhccc-cHHHHHHHHh-
Confidence            46788898899888666655544444        5679999999971  1  1112 22331224444 3555666644 


Q ss_pred             CCCccEEEe
Q psy1489         134 DDKLDVVLS  142 (229)
Q Consensus       134 ~~~~D~V~s  142 (229)
                      ++.+|.-+-
T Consensus       260 dgGvDysfE  268 (375)
T KOG0022|consen  260 DGGVDYSFE  268 (375)
T ss_pred             cCCceEEEE
Confidence            577888773

>PRK07806 short chain dehydrogenase; Provisional

Probab=90.24  E-value=4.1  Score=33.09  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-------C----CCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-------I----DGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-------~----~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.++|-.|+ +|+++..+++.+..       ...+|++++.+....       +    ..+.++ .+|+++++....+.+
T Consensus         6 ~k~vlItGa-sggiG~~l~~~l~~-------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~   76 (248)
T PRK07806          6 GKTALVTGS-SRGIGADTAKILAG-------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAV-GADLTDEESVAALMD   76 (248)
T ss_pred             CcEEEEECC-CCcHHHHHHHHHHH-------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHH
Confidence            578888885 56777777776642       224788877653110       0    235677 899999765443332


Q ss_pred             HhC--CCCccEEEeCCCCCCCCCCcccHH--HHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         131 ILK--DDKLDVVLSDMAPNATGMREMDHD--LITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~~~~g~~~~d~~--~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+.  -+.+|+|+.++..........+..  ....-...+++.+...++.+|+++.
T Consensus        77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~  132 (248)
T PRK07806         77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF  132 (248)
T ss_pred             HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence            211  136899887764321111011100  0011122344556666666777664

>KOG0023|consensus

Probab=90.18  E-value=1.9  Score=37.34  Aligned_cols=94  Identities=22%  Similarity=0.159  Sum_probs=59.9

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---CC--CCCeEEecCCCC-ChhHHHHHHHHh
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---PI--DGAVVLSKCDFT-QPDIQDRLVTIL  132 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~~--~~~~~~~~~D~~-~~~~~~~i~~~~  132 (229)
                      .||++|--+|.|- |.++..+|+.+|          .+|+++|-+.-.   .+  -+++.+  -|.+ +++....+...+
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG----------~rV~vis~~~~kkeea~~~LGAd~f--v~~~~d~d~~~~~~~~~  247 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMG----------MRVTVISTSSKKKEEAIKSLGADVF--VDSTEDPDIMKAIMKTT  247 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhC----------cEEEEEeCCchhHHHHHHhcCccee--EEecCCHHHHHHHHHhh
Confidence            4889988888655 888888888876          699999998511   11  234433  2334 666555555433


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       +.-.|.|.+-                   ....+..+..+||++|++|+.-.
T Consensus       248 -dg~~~~v~~~-------------------a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  248 -DGGIDTVSNL-------------------AEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             -cCcceeeeec-------------------cccchHHHHHHhhcCCEEEEEeC
Confidence             3345555531                   12345558889999999987543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=90.15  E-value=3.5  Score=35.81  Aligned_cols=98  Identities=22%  Similarity=0.227  Sum_probs=61.2

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY--PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~--~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|++.  |.++..+++..+          ..++++-.++  ..  .--++...  -|..+.+..+.+.+..
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G----------~~~v~~~~s~~k~~~~~~lGAd~v--i~y~~~~~~~~v~~~t  207 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALG----------ATVVAVVSSSEKLELLKELGADHV--INYREEDFVEQVRELT  207 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcC----------CcEEEEecCHHHHHHHHhcCCCEE--EcCCcccHHHHHHHHc
Confidence            57799999998544  567777787763          2555555543  11  11122222  2344444556677767


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .+..+|+|+....                  ...+..+.+.|+++|+++..-..
T Consensus       208 ~g~gvDvv~D~vG------------------~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         208 GGKGVDVVLDTVG------------------GDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             CCCCceEEEECCC------------------HHHHHHHHHHhccCCEEEEEecC
Confidence            6778999998432                  13455578889999999875443

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=90.11  E-value=8.9  Score=33.19  Aligned_cols=73  Identities=16%  Similarity=0.029  Sum_probs=47.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC------C---CCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP------I---DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~------~---~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .|++||-.| |+|..+.++++.+-.       ...+|+++|.++...      .   ..+.++ .+|+++.....   ..
T Consensus         3 ~~k~ilItG-atG~IG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~---~~   70 (349)
T TIGR02622         3 QGKKVLVTG-HTGFKGSWLSLWLLE-------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-FGDIRDAAKLR---KA   70 (349)
T ss_pred             CCCEEEEEC-CCChhHHHHHHHHHH-------CCCEEEEEeCCCccchhHHHHHhhcCCceEE-EccCCCHHHHH---HH
Confidence            467888877 677888888876641       224899998765211      1   135567 89999865433   33


Q ss_pred             hCCCCccEEEeCCC
Q psy1489         132 LKDDKLDVVLSDMA  145 (229)
Q Consensus       132 ~~~~~~D~V~sd~~  145 (229)
                      +.+..+|.|+..+.
T Consensus        71 ~~~~~~d~vih~A~   84 (349)
T TIGR02622        71 IAEFKPEIVFHLAA   84 (349)
T ss_pred             HhhcCCCEEEECCc
Confidence            33446899997665

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PHA01634 hypothetical protein

Probab=90.10  E-value=0.44  Score=35.67  Aligned_cols=34  Identities=18%  Similarity=0.037  Sum_probs=30.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+.+|+|+|++-|.-+++++.+          ++..|++++.++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~----------GAK~Vva~E~~~   61 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR----------GASFVVQYEKEE   61 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc----------CccEEEEeccCH
Confidence            5899999999999999999876          457999999987

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.07  E-value=8  Score=34.78  Aligned_cols=126  Identities=22%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++...|++|+-+|+|+ |......++..+          .+|+++|.++...    ..+..+.   +.         .+.
T Consensus       190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~G----------a~ViV~d~dp~r~~~A~~~G~~v~---~l---------eea  247 (406)
T TIGR00936       190 NLLIAGKTVVVAGYGWCGKGIAMRARGMG----------ARVIVTEVDPIRALEAAMDGFRVM---TM---------EEA  247 (406)
T ss_pred             CCCCCcCEEEEECCCHHHHHHHHHHhhCc----------CEEEEEeCChhhHHHHHhcCCEeC---CH---------HHH
Confidence            3345789999999999 444344444433          5899999887321    1222221   11         112


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHcccCCCEEEEee-cCC-CChHHHHHHHHh---hCCeeE
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYSKPGADCLIKI-WDG-RNRPQLEESITR---FYSQVK  205 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~~v~~~-~~~-~~~~~~~~~l~~---~F~~v~  205 (229)
                      +  ...|+|++..     |.            ..++. .....+|+|+.++..- +.. -+...+.+.+..   .-..+.
T Consensus       248 l--~~aDVVItaT-----G~------------~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~  308 (406)
T TIGR00936       248 A--KIGDIFITAT-----GN------------KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVD  308 (406)
T ss_pred             H--hcCCEEEECC-----CC------------HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceE
Confidence            2  2479988722     21            12222 3667889999887532 221 244555554422   123333


Q ss_pred             EEcCCCCCCCCceEEEEeccCC
Q psy1489         206 ILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       206 ~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      .+.    -++...+|+++.|..
T Consensus       309 ~~~----~~~g~~i~ll~~Grl  326 (406)
T TIGR00936       309 EYI----LKDGRRIYLLAEGRL  326 (406)
T ss_pred             EEE----eCCCCEEEEEeCCce
Confidence            333    244568999998864

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=89.97  E-value=0.26  Score=35.63  Aligned_cols=33  Identities=12%  Similarity=-0.036  Sum_probs=24.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      +-...+|||||.|-+.-.|... |          ..-.|+|...
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E-G----------y~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE-G----------YPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC-C----------CCcccccccc
Confidence            4567999999999887776654 2          3557899765

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=89.85  E-value=3.6  Score=34.18  Aligned_cols=97  Identities=16%  Similarity=0.126  Sum_probs=44.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .|.+||=||  -.-++..++...+        +..+|+.+|+.+ +          ..++ ++.. ..|+.++     ++
T Consensus        44 ~gk~il~lG--DDDLtSlA~al~~--------~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~-~~DlR~~-----LP  106 (243)
T PF01861_consen   44 EGKRILFLG--DDDLTSLALALTG--------LPKRITVVDIDERLLDFINRVAEEEGLP-IEAV-HYDLRDP-----LP  106 (243)
T ss_dssp             TT-EEEEES---TT-HHHHHHHHT----------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE----TTS--------
T ss_pred             cCCEEEEEc--CCcHHHHHHHhhC--------CCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEE-Eeccccc-----CC
Confidence            478899766  4444433333344        456999999986 1          1233 6777 8888874     33


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      +.+ .++||+++.|++-..            +-..-.+..+...||.-|..+.-.+..
T Consensus       107 ~~~-~~~fD~f~TDPPyT~------------~G~~LFlsRgi~~Lk~~g~~gy~~~~~  151 (243)
T PF01861_consen  107 EEL-RGKFDVFFTDPPYTP------------EGLKLFLSRGIEALKGEGCAGYFGFTH  151 (243)
T ss_dssp             TTT-SS-BSEEEE---SSH------------HHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred             HHH-hcCCCEEEeCCCCCH------------HHHHHHHHHHHHHhCCCCceEEEEEec
Confidence            323 368999999986311            112334566777887766443323433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=89.83  E-value=0.66  Score=39.05  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=39.1

Q ss_pred             hHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          49 LLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        49 l~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      |+......+++.+...++|+|||.|.++.++++.+...    ..+...++.||...
T Consensus         6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~----~~~~~~~~lIDR~~   57 (259)
T PF05206_consen    6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED----KPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc----ccCCccEEEEecCc
Confidence            55555677888888899999999999999999877411    11235788899864

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=89.64  E-value=3  Score=36.47  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-.|+|+ |..+..+++..+         ..+|+++|.++-  ..  --++. ++   |..+  ......+.+
T Consensus       185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G---------~~~vi~~~~~~~~~~~~~~~Ga~~~i---~~~~~~~~~~~~v~~  252 (369)
T cd08301         185 VKKGSTVAIFGLGAVGLAVAEGARIRG---------ASRIIGVDLNPSKFEQAKKFGVTEFV---NPKDHDKPVQEVIAE  252 (369)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCceEE---cccccchhHHHHHHH
Confidence            46899999998765 445555565543         237999988751  00  01222 22   2111  223333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEeec
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKIW  185 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~~  185 (229)
                      ... +.+|+|+--.     |.            ...+..+.+.+++| |++++.-.
T Consensus       253 ~~~-~~~d~vid~~-----G~------------~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         253 MTG-GGVDYSFECT-----GN------------IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             HhC-CCCCEEEECC-----CC------------hHHHHHHHHHhhcCCCEEEEECc
Confidence            333 3799988622     11            12445577788996 99876433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.52  E-value=4.1  Score=35.35  Aligned_cols=99  Identities=23%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCe-EEecCCCC-ChhHHHHHH
Q psy1489          57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAV-VLSKCDFT-QPDIQDRLV  129 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~-~~~~~D~~-~~~~~~~i~  129 (229)
                      ....+|.+||=.|+|. |..+..+++..+         ..+|++++.++..  .+  -++. ++ ..+-. .......+.
T Consensus       173 ~~~~~g~~vlI~g~g~vG~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~  242 (361)
T cd08231         173 GPVGAGDTVVVQGAGPLGLYAVAAAKLAG---------ARRVIVIDGSPERLELAREFGADATI-DIDELPDPQRRAIVR  242 (361)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCCeEE-cCcccccHHHHHHHH
Confidence            3345788999988644 334444555543         2278888876510  00  1221 22 11111 111112344


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +...+..+|+|+...     |.            ...+..+.+.|+++|+++.
T Consensus       243 ~~~~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~  278 (361)
T cd08231         243 DITGGRGADVVIEAS-----GH------------PAAVPEGLELLRRGGTYVL  278 (361)
T ss_pred             HHhCCCCCcEEEECC-----CC------------hHHHHHHHHHhccCCEEEE
Confidence            444556799999632     10            1234567788999999975

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08293 PTGR2 Prostaglandin reductase

Probab=89.21  E-value=2.2  Score=36.74  Aligned_cols=92  Identities=15%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             cCCC--CeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCC--C---CCCCCe-EEecCCCCChhHHHH
Q psy1489          59 LRPG--LKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPI--Y---PIDGAV-VLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g--~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~--~---~~~~~~-~~~~~D~~~~~~~~~  127 (229)
                      +++|  ++||=.|+ |+ |..+..+++..|          . +|++++.++-  .   .--++. ++   |..+.+..+.
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G----------~~~Vi~~~~s~~~~~~~~~~lGa~~vi---~~~~~~~~~~  216 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG----------CSRVVGICGSDEKCQLLKSELGFDAAI---NYKTDNVAER  216 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcC----------CCEEEEEcCCHHHHHHHHHhcCCcEEE---ECCCCCHHHH
Confidence            3455  89999987 33 556666666653          4 7999887651  1   101222 22   2222233344


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.+.. +..+|+|+...     |.             ..+..+.+.|+++|+++.
T Consensus       217 i~~~~-~~gvd~vid~~-----g~-------------~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         217 LRELC-PEGVDVYFDNV-----GG-------------EISDTVISQMNENSHIIL  252 (345)
T ss_pred             HHHHC-CCCceEEEECC-----Cc-------------HHHHHHHHHhccCCEEEE
Confidence            44433 35799999622     10             123457788999999886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK06196 oxidoreductase; Provisional

Probab=89.18  E-value=5.7  Score=33.90  Aligned_cols=77  Identities=13%  Similarity=0.215  Sum_probs=50.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhC-
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILK-  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~-  133 (229)
                      .+.+||-.|+ +|+++..+++.+..       ...+|+.++.++-      ..+.++.++ .+|+.+......+...+. 
T Consensus        25 ~~k~vlITGa-sggIG~~~a~~L~~-------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~-~~Dl~d~~~v~~~~~~~~~   95 (315)
T PRK06196         25 SGKTAIVTGG-YSGLGLETTRALAQ-------AGAHVIVPARRPDVAREALAGIDGVEVV-MLDLADLESVRAFAERFLD   95 (315)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhhhCeEE-EccCCCHHHHHHHHHHHHh
Confidence            4678888885 57788888876642       2348888887641      123347788 999999765544333221 


Q ss_pred             -CCCccEEEeCCCC
Q psy1489         134 -DDKLDVVLSDMAP  146 (229)
Q Consensus       134 -~~~~D~V~sd~~~  146 (229)
                       .+..|+++.++..
T Consensus        96 ~~~~iD~li~nAg~  109 (315)
T PRK06196         96 SGRRIDILINNAGV  109 (315)
T ss_pred             cCCCCCEEEECCCC
Confidence             2578999998753

>KOG1562|consensus

Probab=89.13  E-value=2.2  Score=36.55  Aligned_cols=121  Identities=12%  Similarity=-0.023  Sum_probs=71.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------------C--CCCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------------P--IDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------------~--~~~~~~~~~~D~~~~~~~  125 (229)
                      ..++||-+|-|-|++....+++ .        .-+.+.-+|+..+.             .  -+.+..+ -||-..    
T Consensus       121 npkkvlVVgggDggvlrevikH-~--------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~-iGDG~~----  186 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKH-K--------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLL-IGDGFL----  186 (337)
T ss_pred             CCCeEEEEecCCccceeeeecc-c--------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEE-eccHHH----
Confidence            4579999999999998777665 2        23466666666420             1  1345566 565332    


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC----hHHHHHHHHhhC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN----RPQLEESITRFY  201 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~----~~~~~~~l~~~F  201 (229)
                        +.+..+.++||+|+.|-+-     ...+....  .....+....+.||++|.+++..-+..-    ..+.+...+..|
T Consensus       187 --fl~~~~~~~~dVii~dssd-----pvgpa~~l--f~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  187 --FLEDLKENPFDVIITDSSD-----PVGPACAL--FQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF  257 (337)
T ss_pred             --HHHHhccCCceEEEEecCC-----ccchHHHH--HHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc
Confidence              3444667899999987642     11111111  1235667788899999998875422221    233334444446


Q ss_pred             Cee
Q psy1489         202 SQV  204 (229)
Q Consensus       202 ~~v  204 (229)
                      ..+
T Consensus       258 ~~t  260 (337)
T KOG1562|consen  258 DLT  260 (337)
T ss_pred             Ccc
Confidence            543

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=89.12  E-value=2.6  Score=36.87  Aligned_cols=94  Identities=26%  Similarity=0.303  Sum_probs=54.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++++++||-.|+|. |..+..+++..|         ..+++++|.++..    .--++. ++   +..+.+....+....
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G---------~~~v~~~~~~~~k~~~~~~~g~~~~i---~~~~~~~~~~v~~~~  251 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAG---------CTTIIAVDIVDSRLELAKELGATHVI---NPKEEDLVAAIREIT  251 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCcEEe---cCCCcCHHHHHHHHh
Confidence            45789999988755 555555666553         2369999887510    001222 22   222222333344444


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                       +..+|+|+...     |.            ...+..+.+.|+++|+++.
T Consensus       252 -~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~G~~v~  283 (365)
T cd08278         252 -GGGVDYALDTT-----GV------------PAVIEQAVDALAPRGTLAL  283 (365)
T ss_pred             -CCCCcEEEECC-----CC------------cHHHHHHHHHhccCCEEEE
Confidence             56799999632     11            0234567888999999886

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=89.04  E-value=2.8  Score=36.14  Aligned_cols=94  Identities=26%  Similarity=0.410  Sum_probs=52.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCC-----CCCCCC-eEEecCCCCChhH---HHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPI-----YPIDGA-VVLSKCDFTQPDI---QDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~-----~~~~~~-~~~~~~D~~~~~~---~~~  127 (229)
                      +++|.+||-.|+|. |..+..+++..|          .+ |++++.++-     ... ++ .++   +..+...   ...
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G----------~~~v~~~~~~~~~~~~~~~~-g~~~vi---~~~~~~~~~~~~~  225 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFG----------ATKVVVTDIDPSRLEFAKEL-GATHTV---NVRTEDTPESAEK  225 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHc-CCcEEe---ccccccchhHHHH
Confidence            57889999887654 445555555543          34 778776541     011 22 222   2222221   333


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.....+..+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       226 ~~~~~~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         226 IAELLGGKGPDVVIECTGA-----------------ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             HHHHhCCCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            4445556679999973311                 12345678889999998753

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=88.92  E-value=2  Score=37.90  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=.|+|+ |..+..+++..|         ..+|++++.++-.    .--++ .++...+..+......+....
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G---------~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~  271 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAG---------ASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT  271 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhc
Confidence            56788998887654 334444555442         2278888876410    00122 122011110112333455556


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+...     |..           ...+..+.+.|+++|+++..
T Consensus       272 ~g~gvDvvld~~-----g~~-----------~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         272 KGWGADIQVEAA-----GAP-----------PATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCCCCEEEECC-----CCc-----------HHHHHHHHHHHHcCCEEEEE
Confidence            566799999632     110           12345577788999999863

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=88.63  E-value=5.9  Score=33.66  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=42.0

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD  143 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd  143 (229)
                      +||-.| |+|.++.++++.+.        ..++|+++|...       ..+ .+|+++.+....   .+.+..+|+|+.-
T Consensus         2 ~iLVtG-~~GfiGs~l~~~L~--------~~g~V~~~~~~~-------~~~-~~Dl~d~~~~~~---~~~~~~~D~Vih~   61 (299)
T PRK09987          2 NILLFG-KTGQVGWELQRALA--------PLGNLIALDVHS-------TDY-CGDFSNPEGVAE---TVRKIRPDVIVNA   61 (299)
T ss_pred             eEEEEC-CCCHHHHHHHHHhh--------ccCCEEEecccc-------ccc-cCCCCCHHHHHH---HHHhcCCCEEEEC
Confidence            567666 67888888888764        334788988653       124 689998764433   3334468999975


Q ss_pred             CCC
Q psy1489         144 MAP  146 (229)
Q Consensus       144 ~~~  146 (229)
                      ++.
T Consensus        62 Aa~   64 (299)
T PRK09987         62 AAH   64 (299)
T ss_pred             Ccc
Confidence            543

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=88.23  E-value=2.4  Score=36.99  Aligned_cols=97  Identities=20%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.++.+||-.|+|+ |..+..+++..+         ...|++++.++-.    .-.++..+  -+..+......+.....
T Consensus       185 ~~~g~~VlI~g~g~vG~~~~~lak~~G---------~~~vi~~~~s~~~~~~~~~~g~~~v--~~~~~~~~~~~l~~~~~  253 (367)
T cd08263         185 VRPGETVAVIGVGGVGSSAIQLAKAFG---------ASPIIAVDVRDEKLAKAKELGATHT--VNAAKEDAVAAIREITG  253 (367)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHhCCceE--ecCCcccHHHHHHHHhC
Confidence            46788888776543 334444444432         2238888766410    00122211  12222233334545555


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+|+.-...         .        ..+..+.+.|+++|+++..
T Consensus       254 ~~~~d~vld~vg~---------~--------~~~~~~~~~l~~~G~~v~~  286 (367)
T cd08263         254 GRGVDVVVEALGK---------P--------ETFKLALDVVRDGGRAVVV  286 (367)
T ss_pred             CCCCCEEEEeCCC---------H--------HHHHHHHHHHhcCCEEEEE
Confidence            6779999973211         0        1345577889999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK07578 short chain dehydrogenase; Provisional

Probab=88.11  E-value=11  Score=29.53  Aligned_cols=100  Identities=20%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD  143 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd  143 (229)
                      ++|-.|. +|+++..+++.+..       . .+|++++.++       ..+ +.|+.+.+....+.+.+  +.+|+++.+
T Consensus         2 ~vlItGa-s~giG~~la~~l~~-------~-~~vi~~~r~~-------~~~-~~D~~~~~~~~~~~~~~--~~id~lv~~   62 (199)
T PRK07578          2 KILVIGA-SGTIGRAVVAELSK-------R-HEVITAGRSS-------GDV-QVDITDPASIRALFEKV--GKVDAVVSA   62 (199)
T ss_pred             eEEEEcC-CcHHHHHHHHHHHh-------c-CcEEEEecCC-------Cce-EecCCChHHHHHHHHhc--CCCCEEEEC
Confidence            5677774 57788888877641       2 5788887654       134 78998876554444333  368999987


Q ss_pred             CCCCC-CCCCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         144 MAPNA-TGMREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       144 ~~~~~-~g~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.... ....+.+.  +. .++    -....++.+...++++|.+++
T Consensus        63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~  109 (199)
T PRK07578         63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTL  109 (199)
T ss_pred             CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            75321 11111111  11 111    112345556666778888775

>PRK05993 short chain dehydrogenase; Provisional

Probab=88.00  E-value=8.8  Score=31.99  Aligned_cols=76  Identities=16%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh---CC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL---KD  134 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~---~~  134 (229)
                      +.+||-.|+ +|+++..+++.+..       ...+|++++.++-  ..  -.++.++ ..|+++......+.+..   ..
T Consensus         4 ~k~vlItGa-sggiG~~la~~l~~-------~G~~Vi~~~r~~~~~~~l~~~~~~~~-~~Dl~d~~~~~~~~~~~~~~~~   74 (277)
T PRK05993          4 KRSILITGC-SSGIGAYCARALQS-------DGWRVFATCRKEEDVAALEAEGLEAF-QLDYAEPESIAALVAQVLELSG   74 (277)
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHCCceEE-EccCCCHHHHHHHHHHHHHHcC
Confidence            567888886 57788887776642       2358999887751  11  1356778 89999976444333222   12


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      +..|+|+.++..
T Consensus        75 g~id~li~~Ag~   86 (277)
T PRK05993         75 GRLDALFNNGAY   86 (277)
T ss_pred             CCccEEEECCCc
Confidence            478999998653

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=87.90  E-value=4.1  Score=34.96  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+||-.|+|. |..+..+++..+         ...|++++.++.  ..+  .++ .++   +..+.. ...+....
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G---------~~~v~~~~~~~~~~~~l~~~g~~~~~---~~~~~~-~~~~~~~~  223 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKILG---------AKRVIAVDIDDEKLAVARELGADDTI---NPKEED-VEKVRELT  223 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCCEEe---cCcccc-HHHHHHHh
Confidence            46788999997644 445555555543         123888876541  000  122 222   222222 33455555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       224 ~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         224 EGRGADLVIEAAGS-----------------PATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            55679999973211                 12345678889999998764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=87.76  E-value=3  Score=35.85  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ..+|.+||-.|+|+ |..+..+++..+          .+ |++++.++..    .-.++..+  -|..+......+....
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G----------~~~v~~~~~~~~~~~~~~~~g~~~~--v~~~~~~~~~~l~~~~  226 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASG----------AYPVIVSDPNEYRLELAKKMGATYV--VNPFKEDVVKEVADLT  226 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCCcEE--EcccccCHHHHHHHhc
Confidence            45788888866542 333344444432          34 7888665410    00122211  1222233334454445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+.....                 ...+..+.+.|+++|+++.-
T Consensus       227 ~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       227 DGEGVDVFLEMSGA-----------------PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCCCCEEEECCCC-----------------HHHHHHHHHhhcCCCEEEEE
Confidence            56679999973210                 12355678889999998764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.71  E-value=2.6  Score=39.00  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=26.4

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      ++.+|+-+|||+ |..+..+++.+|          +.|+++|.++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG----------A~V~v~d~~~  197 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG----------AIVRAFDTRP  197 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCH
Confidence            468999999999 556666666654          5799999886

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=87.60  E-value=3  Score=35.86  Aligned_cols=93  Identities=14%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCC---CCCe-EEecCCCCC-hhHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPI---DGAV-VLSKCDFTQ-PDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~---~~~~-~~~~~D~~~-~~~~~~i~  129 (229)
                      +++|++||=.|+ |. |..+..+++..|          .+|++++.++  ...+   -++. ++   |..+ .+....+.
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G----------~~Vi~~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~~i~  215 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLKG----------CYVVGSAGSDEKVDLLKNKLGFDDAF---NYKEEPDLDAALK  215 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHhcCCceeE---EcCCcccHHHHHH
Confidence            578999999887 33 556666666654          5788887664  1111   1222 22   1111 12233344


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ... +..+|+|+...     |             ...+..+.+.|+++|+++..
T Consensus       216 ~~~-~~gvd~v~d~~-----g-------------~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         216 RYF-PNGIDIYFDNV-----G-------------GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             HhC-CCCcEEEEECC-----C-------------HHHHHHHHHHhccCcEEEEe
Confidence            433 35799998622     1             02345578889999999853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=87.46  E-value=4.2  Score=35.05  Aligned_cols=95  Identities=20%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.++.+||-+|+|+ |..+..+++..+         ..+|+.++.++-.  .+  -++..+  -+-.+......+.....
T Consensus       173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~  241 (350)
T cd08240         173 LVADEPVVIIGAGGLGLMALALLKALG---------PANIIVVDIDEAKLEAAKAAGADVV--VNGSDPDAAKRIIKAAG  241 (350)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHhCCcEE--ecCCCccHHHHHHHHhC
Confidence            44788999987644 444444555543         2368888766410  00  122221  12222233333444444


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      + .+|+|+.....                 ...+..+.+.|+++|+++.
T Consensus       242 ~-~~d~vid~~g~-----------------~~~~~~~~~~l~~~g~~v~  272 (350)
T cd08240         242 G-GVDAVIDFVNN-----------------SATASLAFDILAKGGKLVL  272 (350)
T ss_pred             C-CCcEEEECCCC-----------------HHHHHHHHHHhhcCCeEEE
Confidence            4 79999973210                 1245668888999999885

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=87.45  E-value=1.4  Score=38.99  Aligned_cols=90  Identities=11%  Similarity=0.042  Sum_probs=52.0

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ++|++||-.|+|+ |..+..+|+..|          .+|+++|.++-..     --++..+  -|..+.   ..+.+.. 
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~G----------a~Vi~~~~~~~~~~~~a~~lGa~~~--i~~~~~---~~v~~~~-  240 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFG----------LRVTVISRSSEKEREAIDRLGADSF--LVTTDS---QKMKEAV-  240 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcC----------CeEEEEeCChHHhHHHHHhCCCcEE--EcCcCH---HHHHHhh-
Confidence            5789999999876 555566666654          4788888764110     1133221  122221   2233333 


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ..+|+|+--.     |.            ...+..+.+.|++||+++..
T Consensus       241 -~~~D~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~v  272 (375)
T PLN02178        241 -GTMDFIIDTV-----SA------------EHALLPLFSLLKVSGKLVAL  272 (375)
T ss_pred             -CCCcEEEECC-----Cc------------HHHHHHHHHhhcCCCEEEEE
Confidence             2589998622     21            12455678889999999864

>KOG2920|consensus

Probab=87.28  E-value=0.59  Score=39.59  Aligned_cols=36  Identities=19%  Similarity=-0.016  Sum_probs=27.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .-.|++|||||||+|--.+.+...          ....+...|.+.
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~----------~~~~~~fqD~na  149 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVK----------GAVSVHFQDFNA  149 (282)
T ss_pred             EecCceeEecCCcccccchhhhhh----------ccceeeeEecch
Confidence            346899999999999888887654          235677777775

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=87.21  E-value=14  Score=31.82  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      |.+||-.|+ +|.++..+++.+...+     ...+|+++|.++..        ...++.++ .+|+++......   .+.
T Consensus         4 ~k~vLVTGa-tG~IG~~l~~~L~~~g-----~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v-~~Dl~d~~~l~~---~~~   73 (324)
T TIGR03589         4 NKSILITGG-TGSFGKAFISRLLENY-----NPKKIIIYSRDELKQWEMQQKFPAPCLRFF-IGDVRDKERLTR---ALR   73 (324)
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHHhC-----CCcEEEEEcCChhHHHHHHHHhCCCcEEEE-EccCCCHHHHHH---HHh
Confidence            678887775 6888888887664110     12478888765421        11357788 899999764433   232


Q ss_pred             CCCccEEEeCCCC
Q psy1489         134 DDKLDVVLSDMAP  146 (229)
Q Consensus       134 ~~~~D~V~sd~~~  146 (229)
                        .+|+|+..+..
T Consensus        74 --~iD~Vih~Ag~   84 (324)
T TIGR03589        74 --GVDYVVHAAAL   84 (324)
T ss_pred             --cCCEEEECccc
Confidence              48999987653

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=87.12  E-value=4.5  Score=34.77  Aligned_cols=93  Identities=20%  Similarity=0.296  Sum_probs=50.9

Q ss_pred             cCCCCeeEeecCCCCchHHH---HHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQV---AVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~---la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~  130 (229)
                      +.++.+||=.|+  |..+..   +++..+         ..+|++++.++..    .--++. ++   |..+.+....+..
T Consensus       164 ~~~g~~vlI~g~--g~~g~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~v---~~~~~~~~~~i~~  229 (345)
T cd08286         164 VKPGDTVAIVGA--GPVGLAALLTAQLYS---------PSKIIMVDLDDNRLEVAKKLGATHTV---NSAKGDAIEQVLE  229 (345)
T ss_pred             CCCCCEEEEECC--CHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHhCCCcee---ccccccHHHHHHH
Confidence            467888888775  454444   444432         2478888876511    001221 22   2222223333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ...+..+|+|+.-.     +.            ...+..+.+.|+++|+++.
T Consensus       230 ~~~~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         230 LTDGRGVDVVIEAV-----GI------------PATFELCQELVAPGGHIAN  264 (345)
T ss_pred             HhCCCCCCEEEECC-----CC------------HHHHHHHHHhccCCcEEEE
Confidence            55566799999622     10            1234557788999999975

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.73  E-value=13  Score=29.77  Aligned_cols=115  Identities=9%  Similarity=0.056  Sum_probs=62.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|++++.++-  .       ...++.++ .+|+.+.+....+.+.
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~   74 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALK-------EGAQVCINSRNENKLKRMKKTLSKYGNIHYV-VGDVSSTESARNVIEK   74 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHHH
Confidence            36789999985 7777777776631       2348999988651  0       11246778 8999987644433222


Q ss_pred             hC--CCCccEEEeCCCCCCC-CCCcccHHHH-HH----HHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LK--DDKLDVVLSDMAPNAT-GMREMDHDLI-TQ----LAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~--~~~~D~V~sd~~~~~~-g~~~~d~~~~-~~----~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..  -+.+|.++........ ...+.+.+.. ++    -....++.....++++|.+++..
T Consensus        75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            11  1357988876642111 1111111100 00    11123455556677888887643

>cd05281 TDH Threonine dehydrogenase

Probab=86.66  E-value=3.8  Score=35.26  Aligned_cols=95  Identities=24%  Similarity=0.273  Sum_probs=51.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ..+|.+||-.|+|. |..+..+++..+          . +|++++-++..    .-.++..+  -+....+.. .+....
T Consensus       161 ~~~g~~vlV~g~g~vg~~~~~la~~~G----------~~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~  227 (341)
T cd05281         161 DVSGKSVLITGCGPIGLMAIAVAKAAG----------ASLVIASDPNPYRLELAKKMGADVV--INPREEDVV-EVKSVT  227 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCccee--eCcccccHH-HHHHHc
Confidence            35788998877643 444555555543          3 67777654310    00122111  122222222 344555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +++.+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       228 ~~~~vd~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         228 DGTGVDVVLEMSGN-----------------PKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCCCCCEEEECCCC-----------------HHHHHHHHHHhccCCEEEEE
Confidence            56789999973310                 12345577889999998753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.59  E-value=17  Score=30.01  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CC----CC--CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IY----PI--DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~----~~--~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|-.|+++ ++++..+++.+..       ...+|+.++.+.     +.    .+  ..+.++ +.|+.+.+....+
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~-------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~   77 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHN-------AGAKLVFTYAGERLEKEVRELADTLEGQESLLL-PCDVTSDEEITAC   77 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-------CCCEEEEecCcccchHHHHHHHHHcCCCceEEE-ecCCCCHHHHHHH
Confidence            467899999984 8888888887752       224777765432     10    11  235677 8999998655444


Q ss_pred             HHHhCC--CCccEEEeCCC
Q psy1489         129 VTILKD--DKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~~--~~~D~V~sd~~  145 (229)
                      .+.+.+  +.+|+++.++.
T Consensus        78 ~~~~~~~~g~ld~lv~nag   96 (257)
T PRK08594         78 FETIKEEVGVIHGVAHCIA   96 (257)
T ss_pred             HHHHHHhCCCccEEEECcc
Confidence            332221  57999998764

>PRK07326 short chain dehydrogenase; Provisional

Probab=86.25  E-value=11  Score=30.35  Aligned_cols=77  Identities=14%  Similarity=0.076  Sum_probs=48.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---CCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .+.+||-.| |+|+++..+++++..       ...+|++++.++-  .    .+   ..+.++ ++|+.+..........
T Consensus         5 ~~~~ilItG-atg~iG~~la~~l~~-------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~~~~~   75 (237)
T PRK07326          5 KGKVALITG-GSKGIGFAIAEALLA-------EGYKVAITARDQKELEEAAAELNNKGNVLGL-AADVRDEADVQRAVDA   75 (237)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHH-------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEE-EccCCCHHHHHHHHHH
Confidence            357888888 578888888876642       2357899887651  0    11   356777 8999987644332221


Q ss_pred             h-C-CCCccEEEeCCCC
Q psy1489         132 L-K-DDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~-~-~~~~D~V~sd~~~  146 (229)
                      + . -+.+|.|+..+..
T Consensus        76 ~~~~~~~~d~vi~~ag~   92 (237)
T PRK07326         76 IVAAFGGLDVLIANAGV   92 (237)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            1 1 1368999987653

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=86.21  E-value=4.5  Score=35.24  Aligned_cols=95  Identities=19%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+||-.|+|. |..+..+++..+         ...|++++.++-  .  .--++ .++   +.........+....
T Consensus       180 ~~~g~~vLI~g~g~vG~a~i~lak~~G---------~~~Vi~~~~~~~~~~~~~~~g~~~vv---~~~~~~~~~~l~~~~  247 (363)
T cd08279         180 VRPGDTVAVIGCGGVGLNAIQGARIAG---------ASRIIAVDPVPEKLELARRFGATHTV---NASEDDAVEAVRDLT  247 (363)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCcEEEEcCCHHHHHHHHHhCCeEEe---CCCCccHHHHHHHHc
Confidence            46788999887643 444455555543         224888876641  0  00122 222   222222333454445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ++..+|+++.....                 ...+..+.+.|+++|+++.
T Consensus       248 ~~~~vd~vld~~~~-----------------~~~~~~~~~~l~~~G~~v~  280 (363)
T cd08279         248 DGRGADYAFEAVGR-----------------AATIRQALAMTRKGGTAVV  280 (363)
T ss_pred             CCCCCCEEEEcCCC-----------------hHHHHHHHHHhhcCCeEEE
Confidence            55679999863211                 1234567888999999875

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK06523 short chain dehydrogenase; Provisional

Probab=86.12  E-value=17  Score=29.66  Aligned_cols=76  Identities=12%  Similarity=0.178  Sum_probs=48.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-CCCeEEecCCCCChhHHHHHHHHh-C-CCCc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTIL-K-DDKL  137 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-~~~~~~~~~D~~~~~~~~~i~~~~-~-~~~~  137 (229)
                      +|++||-.|+ +|+++..+++.+..       ...+|+.++.++-... ..+.++ ++|+.+.+....+...+ . -+.+
T Consensus         8 ~~k~vlItGa-s~gIG~~ia~~l~~-------~G~~v~~~~r~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~i   78 (260)
T PRK06523          8 AGKRALVTGG-TKGIGAATVARLLE-------AGARVVTTARSRPDDLPEGVEFV-AADLTTAEGCAAVARAVLERLGGV   78 (260)
T ss_pred             CCCEEEEECC-CCchhHHHHHHHHH-------CCCEEEEEeCChhhhcCCceeEE-ecCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678998885 45677777766542       2358888887652222 246677 89999976544332221 1 1468


Q ss_pred             cEEEeCCC
Q psy1489         138 DVVLSDMA  145 (229)
Q Consensus       138 D~V~sd~~  145 (229)
                      |+|+.+..
T Consensus        79 d~vi~~ag   86 (260)
T PRK06523         79 DILVHVLG   86 (260)
T ss_pred             CEEEECCc
Confidence            99998764

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.87  E-value=7.4  Score=28.61  Aligned_cols=93  Identities=27%  Similarity=0.287  Sum_probs=57.6

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEe
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS  142 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~s  142 (229)
                      .+|+++|-|-  +... |+++..       ....|+++|+.+.....++.+. ..|+++++..     ..  ...|+|.|
T Consensus        15 gkVvEVGiG~--~~~V-A~~L~e-------~g~dv~atDI~~~~a~~g~~~v-~DDitnP~~~-----iY--~~A~lIYS   76 (129)
T COG1255          15 GKVVEVGIGF--FLDV-AKRLAE-------RGFDVLATDINEKTAPEGLRFV-VDDITNPNIS-----IY--EGADLIYS   76 (129)
T ss_pred             CcEEEEccch--HHHH-HHHHHH-------cCCcEEEEecccccCcccceEE-EccCCCccHH-----Hh--hCccceee
Confidence            4899998653  3333 333331       1258999999985444789999 9999998632     12  35899999


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       143 d~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      --+|         .    ++...+++.+..   -|-.++++-+.+..
T Consensus        77 iRpp---------p----El~~~ildva~a---Vga~l~I~pL~Ge~  107 (129)
T COG1255          77 IRPP---------P----ELQSAILDVAKA---VGAPLYIKPLTGEP  107 (129)
T ss_pred             cCCC---------H----HHHHHHHHHHHh---hCCCEEEEecCCCC
Confidence            5544         1    223344444432   35667777666554

>PRK08265 short chain dehydrogenase; Provisional

Probab=85.66  E-value=19  Score=29.66  Aligned_cols=77  Identities=14%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CC-CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PI-DGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~-~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .+.++|-.|+ +|+++..+++.+..       ...+|+.+|.++-.      .. ..+.++ ++|+.+.+....+.+...
T Consensus         5 ~~k~vlItGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~   75 (261)
T PRK08265          5 AGKVAIVTGG-ATLIGAAVARALVA-------AGARVAIVDIDADNGAAVAASLGERARFI-ATDITDDAAIERAVATVV   75 (261)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhCCeeEEE-EecCCCHHHHHHHHHHHH
Confidence            3567888885 56677777766542       23488888887510      11 246677 899998764433322111


Q ss_pred             --CCCccEEEeCCCC
Q psy1489         134 --DDKLDVVLSDMAP  146 (229)
Q Consensus       134 --~~~~D~V~sd~~~  146 (229)
                        -+..|+++.++..
T Consensus        76 ~~~g~id~lv~~ag~   90 (261)
T PRK08265         76 ARFGRVDILVNLACT   90 (261)
T ss_pred             HHhCCCCEEEECCCC
Confidence              1468999987653

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=85.05  E-value=21  Score=30.30  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC----------CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP----------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~----------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++||-.| |+|.++..+++++-.       ...+|++++.++.  ..          ..++.++ .+|+++...... 
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~-   73 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLF-------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLF-KADLLDEGSFEL-   73 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHH-------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEE-eCCCCCchHHHH-
Confidence            467888888 678888888887642       2246766654431  00          1246778 899998764333 


Q ss_pred             HHHhCCCCccEEEeCCCC
Q psy1489         129 VTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~  146 (229)
                        .+.  .+|+|+..+..
T Consensus        74 --~~~--~~d~vih~A~~   87 (325)
T PLN02989         74 --AID--GCETVFHTASP   87 (325)
T ss_pred             --HHc--CCCEEEEeCCC
Confidence              232  48999987764

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=85.05  E-value=0.67  Score=38.67  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=25.4

Q ss_pred             cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          56 IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        56 ~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      |..+.+..+|+|||||-==++.......         +...++|+|++.
T Consensus       100 f~~~~~p~sVlDigCGlNPlalp~~~~~---------~~a~Y~a~DID~  139 (251)
T PF07091_consen  100 FGRIPPPDSVLDIGCGLNPLALPWMPEA---------PGATYIAYDIDS  139 (251)
T ss_dssp             CCCS---SEEEEET-TTCHHHHHTTTSS---------TT-EEEEEESBH
T ss_pred             HhcCCCCchhhhhhccCCceehhhcccC---------CCcEEEEEeCCH
Confidence            4455567899999999876666543221         456999999986

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.94  E-value=21  Score=29.64  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +++.+|=.|++. ++++..+++.+..       ...+|+.++.+.-         ...+.+.++ ..|+.+.+....+..
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~-------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~   76 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHR-------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVL-PCDVAEDASIDAMFA   76 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHH-------CCCEEEEEecchhHHHHHHHHHhccCCceEe-ecCCCCHHHHHHHHH
Confidence            467889999987 4888887877642       2247777765420         012335567 899999775554433


Q ss_pred             HhCC--CCccEEEeCCCC
Q psy1489         131 ILKD--DKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~~--~~~D~V~sd~~~  146 (229)
                      ...+  +.+|+++.++..
T Consensus        77 ~~~~~~g~iD~linnAg~   94 (262)
T PRK07984         77 ELGKVWPKFDGFVHSIGF   94 (262)
T ss_pred             HHHhhcCCCCEEEECCcc
Confidence            2211  468999998753

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=84.87  E-value=6.8  Score=33.41  Aligned_cols=92  Identities=17%  Similarity=0.166  Sum_probs=48.8

Q ss_pred             CCCeeEee--cCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCCCCC-eEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDC--GAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPIDGA-VVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDl--GcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~~~~-~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++..+|=+  |+|+ |..+..+++..+          .+|++++.++-     ..+ ++ .++   |..+.+....+.+.
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G----------~~vi~~~~~~~~~~~~~~~-g~~~~i---~~~~~~~~~~v~~~  207 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADG----------IKVINIVRRKEQVDLLKKI-GAEYVL---NSSDPDFLEDLKEL  207 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHc-CCcEEE---ECCCccHHHHHHHH
Confidence            34555554  4444 445555565543          57888887651     111 22 222   22223333445555


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..+..+|+|+...     |.             .....+.+.|+++|++++.-
T Consensus       208 ~~~~~~d~vid~~-----g~-------------~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         208 IAKLNATIFFDAV-----GG-------------GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             hCCCCCcEEEECC-----Cc-------------HHHHHHHHhhCCCCEEEEEE
Confidence            5556799999622     21             11223566789999987643

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=84.77  E-value=21  Score=29.39  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC----------CCCCCeEEecCCCCChhHH
Q psy1489          58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY----------PIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        58 ~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~----------~~~~~~~~~~~D~~~~~~~  125 (229)
                      +++.+.++.|+||--+.+..+|.+..         +...++++|+++  ..          ..+.++.. .+|-..    
T Consensus        13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~---------~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr-~~dgl~----   78 (226)
T COG2384          13 LVKQGARIADIGSDHAYLPIYLVKNN---------PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVR-LGDGLA----   78 (226)
T ss_pred             HHHcCCceeeccCchhHhHHHHHhcC---------CcceEEEeecccCHHHHHHHHHHhcCCcceEEEe-ccCCcc----
Confidence            35567789999999999999998865         667899999997  10          01223333 444322    


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                          .+-.+..+|+|+..++-   |          .+...+|.+..+.|+.=-++|+  -+-.+...+++.+...
T Consensus        79 ----~l~~~d~~d~ivIAGMG---G----------~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~  134 (226)
T COG2384          79 ----VLELEDEIDVIVIAGMG---G----------TLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSAN  134 (226)
T ss_pred             ----ccCccCCcCEEEEeCCc---H----------HHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhC
Confidence                11224468877754321   1          2344666777777764445554  2233456666666554

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=84.67  E-value=5.7  Score=34.10  Aligned_cols=97  Identities=21%  Similarity=0.181  Sum_probs=53.6

Q ss_pred             CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+|++||-.|+|. |..+..+++..+         ..+|++++.++..    .--+++.+  -+..+.+....+.....+
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~~lg~~~~--~~~~~~~~~~~~~~~~~~  230 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVG---------ARHVVITDVNEYRLELARKMGATRA--VNVAKEDLRDVMAELGMT  230 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHhCCcEE--ecCccccHHHHHHHhcCC
Confidence            4788998877654 444455555543         2267777655410    00122211  133333334445444555


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..+|+|+.-...                 ...+..+.+.|+++|+++..-
T Consensus       231 ~~~d~v~d~~g~-----------------~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        231 EGFDVGLEMSGA-----------------PSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEEe
Confidence            679999972210                 124555778899999998753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.42  E-value=23  Score=29.63  Aligned_cols=78  Identities=21%  Similarity=0.139  Sum_probs=49.4

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CC----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IY----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|-.|++. ++++..+++.+..       ...+|+.++.+.     ..    .......+ +.|+.+.+....+.+
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~-------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~   75 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFE-------QGAELAFTYLNEALKKRVEPIAQELGSDYVY-ELDVSKPEHFKSLAE   75 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHH-------CCCEEEEEecCHHHHHHHHHHHHhcCCceEE-EecCCCHHHHHHHHH
Confidence            367889999874 6888888877652       224787777652     11    11111466 899999765544433


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+.+|+++.++..
T Consensus        76 ~i~~~~g~iDilVnnAG~   93 (274)
T PRK08415         76 SLKKDLGKIDFIVHSVAF   93 (274)
T ss_pred             HHHHHcCCCCEEEECCcc
Confidence            221  2579999998753

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.34  E-value=23  Score=29.54  Aligned_cols=78  Identities=21%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|-.|++. ++++..+++.+..       ...+|+.++.+.-     .    .......+ +.|+.+.+....+.+
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~-------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~-~~Dv~d~~~v~~~~~   77 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAA-------QGAELAFTYQGEALGKRVKPLAESLGSDFVL-PCDVEDIASVDAVFE   77 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHh-------CCCEEEEecCchHHHHHHHHHHHhcCCceEE-eCCCCCHHHHHHHHH
Confidence            467899999886 4777777776642       2247777765430     0    11223456 899999764443332


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+..|+++.++..
T Consensus        78 ~~~~~~g~iD~lVnnAG~   95 (271)
T PRK06505         78 ALEKKWGKLDFVVHAIGF   95 (271)
T ss_pred             HHHHHhCCCCEEEECCcc
Confidence            221  1579999998753

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=84.34  E-value=6.5  Score=31.54  Aligned_cols=65  Identities=17%  Similarity=0.098  Sum_probs=43.8

Q ss_pred             cCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489          69 GAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus        69 GcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      =|.+|..+..+++....       ....|+++=.++  +...+++.++ +.|+.++.....   .+  ..||+|++....
T Consensus         6 IgAsG~~Gs~i~~EA~~-------RGHeVTAivRn~~K~~~~~~~~i~-q~Difd~~~~a~---~l--~g~DaVIsA~~~   72 (211)
T COG2910           6 IGASGKAGSRILKEALK-------RGHEVTAIVRNASKLAARQGVTIL-QKDIFDLTSLAS---DL--AGHDAVISAFGA   72 (211)
T ss_pred             EecCchhHHHHHHHHHh-------CCCeeEEEEeChHhccccccceee-cccccChhhhHh---hh--cCCceEEEeccC
Confidence            35678777777765421       345899998877  4444778888 999999754322   22  369999996644

>PRK06182 short chain dehydrogenase; Validated

Probab=84.26  E-value=14  Score=30.49  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC--CCCCeEEecCCCCChhHHHHHHHHh--CCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP--IDGAVVLSKCDFTQPDIQDRLVTIL--KDD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~--~~~~~~~~~~D~~~~~~~~~i~~~~--~~~  135 (229)
                      +.++|=.|+ +|+++..+++.+..       ...+|++++.++  ...  -.++.++ .+|+++.+....+.+.+  ..+
T Consensus         3 ~k~vlItGa-sggiG~~la~~l~~-------~G~~V~~~~r~~~~l~~~~~~~~~~~-~~Dv~~~~~~~~~~~~~~~~~~   73 (273)
T PRK06182          3 KKVALVTGA-SSGIGKATARRLAA-------QGYTVYGAARRVDKMEDLASLGVHPL-SLDVTDEASIKAAVDTIIAEEG   73 (273)
T ss_pred             CCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHhCCCeEE-EeeCCCHHHHHHHHHHHHHhcC
Confidence            567887785 56788888876641       235888888765  111  1357788 89999976554433221  124


Q ss_pred             CccEEEeCCCC
Q psy1489         136 KLDVVLSDMAP  146 (229)
Q Consensus       136 ~~D~V~sd~~~  146 (229)
                      .+|+++.++..
T Consensus        74 ~id~li~~ag~   84 (273)
T PRK06182         74 RIDVLVNNAGY   84 (273)
T ss_pred             CCCEEEECCCc
Confidence            68999998754

>PRK07454 short chain dehydrogenase; Provisional

Probab=84.11  E-value=17  Score=29.27  Aligned_cols=76  Identities=13%  Similarity=0.026  Sum_probs=49.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--C--------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--P--------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~--------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+.++|-.|+ +|+++..+++++..       ...+|+.++.++-.  .        -.++.++ .+|+++.+....+.+
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~   75 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAK-------AGWDLALVARSQDALEALAAELRSTGVKAAAY-SIDLSNPEAIAPGIA   75 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE-EccCCCHHHHHHHHH
Confidence            4567888884 78888888887742       23489999887510  0        1246678 899999765433322


Q ss_pred             HhC--CCCccEEEeCCC
Q psy1489         131 ILK--DDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~  145 (229)
                      .+.  -+..|+|+.++.
T Consensus        76 ~~~~~~~~id~lv~~ag   92 (241)
T PRK07454         76 ELLEQFGCPDVLINNAG   92 (241)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            211  146899998764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=84.03  E-value=3  Score=39.80  Aligned_cols=106  Identities=15%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhc-cCCCC--CCCCcEEEEEeCCCCCC---------------------------CCCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNS-HGYDS--KQPKGLVLSVDKLPIYP---------------------------IDGA  111 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~-~~~~~--~~~~~~v~gvD~~~~~~---------------------------~~~~  111 (229)
                      .-+|+|+|-|+|.....+.+.... ....+  ....-+++++|..|+..                           ++++
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            478999999999876666654310 00001  00124899999765310                           1222


Q ss_pred             ------------eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCE
Q psy1489         112 ------------VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGAD  179 (229)
Q Consensus       112 ------------~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~  179 (229)
                                  +.. .+|+.+     .+.+ + ...||+++.|+.. +...+++       ....++..+.++++|||+
T Consensus       138 ~~~~~~~~~~~l~l~-~gd~~~-----~~~~-~-~~~~d~~~lD~Fs-P~~np~~-------W~~~~~~~l~~~~~~~~~  201 (662)
T PRK01747        138 HRLLFDDGRVTLDLW-FGDANE-----LLPQ-L-DARADAWFLDGFA-PAKNPDM-------WSPNLFNALARLARPGAT  201 (662)
T ss_pred             eEEEecCCcEEEEEE-ecCHHH-----HHHh-c-cccccEEEeCCCC-CccChhh-------ccHHHHHHHHHHhCCCCE
Confidence                        122 344332     2222 2 2469999999742 1111111       124678889999999999


Q ss_pred             EEEe
Q psy1489         180 CLIK  183 (229)
Q Consensus       180 ~v~~  183 (229)
                      |+..
T Consensus       202 ~~t~  205 (662)
T PRK01747        202 LATF  205 (662)
T ss_pred             EEEe
Confidence            9853

>PLN02702 L-idonate 5-dehydrogenase

Probab=83.94  E-value=9.3  Score=33.23  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH--
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI--  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~--  131 (229)
                      +.++.+||-+|+|+ |..+..+++..+         ...|+++|.++.  ...  -++...-.-+-.+.+....+...  
T Consensus       179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (364)
T PLN02702        179 IGPETNVLVMGAGPIGLVTMLAARAFG---------APRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQK  249 (364)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhh
Confidence            45788999887644 444455555543         235788887641  100  12221101111112222223222  


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .....+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       250 ~~~~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  284 (364)
T PLN02702        250 AMGGGIDVSFDCVGF-----------------NKTMSTALEATRAGGKVCLV  284 (364)
T ss_pred             hcCCCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            224579999973210                 12456688889999998753

>KOG2352|consensus

Probab=83.81  E-value=4.3  Score=37.03  Aligned_cols=128  Identities=16%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCC--CCeEEecCCCCChh------HHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPID--GAVVLSKCDFTQPD------IQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~--~~~~~~~~D~~~~~------~~~~i~~~  131 (229)
                      .+..+|-+|-|.|++...+-...         |..++++|++.| |..+.  ...+. +.|-.+..      ...+....
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~---------p~~~i~~ve~dP~~l~va~q~f~f~-q~~r~~V~i~dGl~~~~~~~k~  364 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSL---------PKFQITAVEIDPEMLEVATQYFGFM-QSDRNKVHIADGLDFLQRTAKS  364 (482)
T ss_pred             ccCcEEEEecCCCccccceeeec---------CccceeEEEEChhHhhccHhhhchh-hhhhhhhhHhhchHHHHHHhhc
Confidence            35678888999999988876655         567999999998 32221  22222 22211111      11111111


Q ss_pred             -hCCCCccEEEeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhhC
Q psy1489         132 -LKDDKLDVVLSDMAP-NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRFY  201 (229)
Q Consensus       132 -~~~~~~D~V~sd~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~F  201 (229)
                       -.+..||+++-|... +..|..-...   ..+...+|..+...|.|-|.|++..-..  .-..++..-|...|
T Consensus       365 ~~~~~~~dvl~~dvds~d~~g~~~pp~---~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf  435 (482)
T KOG2352|consen  365 QQEDICPDVLMVDVDSKDSHGMQCPPP---AFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF  435 (482)
T ss_pred             cccccCCcEEEEECCCCCcccCcCCch---HHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence             135689999987632 2222222222   2344577888899999999998865332  22344445454444

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.81  E-value=24  Score=29.40  Aligned_cols=78  Identities=21%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----C----CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----I----YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~----~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|-.|++ .++++..+++.+..       ...+|+.++.+.     .    ..+.....+ +.|+.+.+....+..
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~-------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~~~   80 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRA-------AGAELAFTYQGDALKKRVEPLAAELGAFVAG-HCDVTDEASIDAVFE   80 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHH-------CCCEEEEEcCchHHHHHHHHHHHhcCCceEE-ecCCCCHHHHHHHHH
Confidence            46788989997 58888888887752       224776665432     0    112234567 899999765544433


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+..|+++.++..
T Consensus        81 ~~~~~~g~iD~lv~nAG~   98 (272)
T PRK08159         81 TLEKKWGKLDFVVHAIGF   98 (272)
T ss_pred             HHHHhcCCCcEEEECCcc
Confidence            222  2468999998753

>PLN02240 UDP-glucose 4-epimerase

Probab=83.72  E-value=27  Score=29.96  Aligned_cols=72  Identities=19%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------------CCCCCeEEecCCCCChhHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.+||-.| |+|.++.++++.+..       ...+|+++|...-.              ...++.++ .+|+++......
T Consensus         5 ~~~vlItG-atG~iG~~l~~~L~~-------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~l~~   75 (352)
T PLN02240          5 GRTILVTG-GAGYIGSHTVLQLLL-------AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-KVDLRDKEALEK   75 (352)
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHH-------CCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEE-ecCcCCHHHHHH
Confidence            56888888 678888888877642       22479998753210              01256778 899998754433


Q ss_pred             HHHHhCCCCccEEEeCCC
Q psy1489         128 LVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~  145 (229)
                         .+....+|.|+....
T Consensus        76 ---~~~~~~~d~vih~a~   90 (352)
T PLN02240         76 ---VFASTRFDAVIHFAG   90 (352)
T ss_pred             ---HHHhCCCCEEEEccc
Confidence               233346899988654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=83.72  E-value=0.93  Score=36.35  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=24.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      ..+|+.|||--||+|.-+.++. .++          -+.+|+|+++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~-~l~----------R~~ig~E~~~  223 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAE-ELG----------RRYIGIEIDE  223 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHH-HTT-----------EEEEEESSH
T ss_pred             hccceeeehhhhccChHHHHHH-HcC----------CeEEEEeCCH
Confidence            3579999999999998776644 443          4799999986

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=83.70  E-value=19  Score=28.08  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      ++.+|+=|||=+-...  +.+...        +..+++-.|... .....+-.+. .=|...+.   .+...+ .++||+
T Consensus        25 ~~~~iaclstPsl~~~--l~~~~~--------~~~~~~Lle~D~RF~~~~~~~F~-fyD~~~p~---~~~~~l-~~~~d~   89 (162)
T PF10237_consen   25 DDTRIACLSTPSLYEA--LKKESK--------PRIQSFLLEYDRRFEQFGGDEFV-FYDYNEPE---ELPEEL-KGKFDV   89 (162)
T ss_pred             CCCEEEEEeCcHHHHH--HHhhcC--------CCccEEEEeecchHHhcCCcceE-ECCCCChh---hhhhhc-CCCceE
Confidence            4678998876544332  222111        445777777765 2222211355 56776653   244445 579999


Q ss_pred             EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489         140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS  214 (229)
Q Consensus       140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~  214 (229)
                      |++|++..           ..+........+..++++++.+++..  +....+++..+-  =-+...++|...+.
T Consensus        90 vv~DPPFl-----------~~ec~~k~a~ti~~L~k~~~kii~~T--g~~~~~~~~~ll--~~~~~~f~p~h~~~  149 (162)
T PF10237_consen   90 VVIDPPFL-----------SEECLTKTAETIRLLLKPGGKIILCT--GEEMEELIKKLL--GLRMCDFQPEHPNN  149 (162)
T ss_pred             EEECCCCC-----------CHHHHHHHHHHHHHHhCccceEEEec--HHHHHHHHHHHh--CeeEEeEEeccccC
Confidence            99999751           11112233333444457778876532  222233332222  12344566766654

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=83.64  E-value=3.7  Score=35.22  Aligned_cols=93  Identities=23%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             cCCCCeeEeecCCCCchHHH---HHHHHhccCCCCCCCCcEEEEEeCCCCC--C--CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQV---AVKLVNSHGYDSKQPKGLVLSVDKLPIY--P--IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~---la~~~~~~~~~~~~~~~~v~gvD~~~~~--~--~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +.++.+||=.|+  |..+..   +++..+         ..+|++++.++..  .  --++..+ ..  ........+.+.
T Consensus       165 ~~~~~~vlI~g~--g~vg~~~~~~a~~~g---------~~~v~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~~l~~~  230 (344)
T cd08284         165 VRPGDTVAVIGC--GPVGLCAVLSAQVLG---------AARVFAVDPVPERLERAAALGAEPI-NF--EDAEPVERVREA  230 (344)
T ss_pred             CccCCEEEEECC--cHHHHHHHHHHHHcC---------CceEEEEcCCHHHHHHHHHhCCeEE-ec--CCcCHHHHHHHH
Confidence            457889988865  455544   444432         1268888665410  0  0122222 12  122233345555


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+++.+|+|+.....                 ...+..+.+.|+++|+++.
T Consensus       231 ~~~~~~dvvid~~~~-----------------~~~~~~~~~~l~~~g~~v~  264 (344)
T cd08284         231 TEGRGADVVLEAVGG-----------------AAALDLAFDLVRPGGVISS  264 (344)
T ss_pred             hCCCCCCEEEECCCC-----------------HHHHHHHHHhcccCCEEEE
Confidence            556679999972210                 1245567888999999875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=83.34  E-value=11  Score=33.01  Aligned_cols=95  Identities=17%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCCh--hHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQP--DIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~--~~~~~i~~  130 (229)
                      +.+|.+||=.|+|+ |..+..+++..+         ...|++++.++-  ...  -++ .++   +..+.  +....+..
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~v---~~~~~~~~~~~~l~~  248 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAG---------ASRIIAVDINKDKFEKAKQLGATECI---NPRDQDKPIVEVLTE  248 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHhCCCeec---ccccccchHHHHHHH
Confidence            56789999887655 444444555543         235788886541  000  122 222   22222  23333444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHccc-CCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSK-PGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk-pgG~~v~~  183 (229)
                      .. ++.+|+|+.-.     |.            ...+..+.+.|+ ++|+++..
T Consensus       249 ~~-~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         249 MT-DGGVDYAFEVI-----GS------------ADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             Hh-CCCCcEEEECC-----CC------------HHHHHHHHHHhccCCCEEEEE
Confidence            44 46799999622     10            124556778898 99998853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG0822|consensus

Probab=83.26  E-value=1.6  Score=40.30  Aligned_cols=95  Identities=18%  Similarity=0.280  Sum_probs=58.3

Q ss_pred             CeeEeecCCCCchHHHHHH---HHhccCCCCCCCCcEEEEEeCCCCC--CC---------CCCeEEecCCCCChhHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVK---LVNSHGYDSKQPKGLVLSVDKLPIY--PI---------DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~---~~~~~~~~~~~~~~~v~gvD~~~~~--~~---------~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..|+-+|+|.|-+.....+   ...        ..-++++|+-+|-+  .+         ..++++ ..|.+.-.     
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~--------RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii-~~DMR~w~-----  434 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETD--------RKVKLYAVEKNPNAIVTLQNRNFECWDNRVTII-SSDMRKWN-----  434 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhc--------CceEEEEEecCcchhhhhhhhchhhhcCeeEEE-eccccccC-----
Confidence            4678889999977655433   222        34589999998821  11         246677 77766521     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         -+.++.|+++|-.-- -.|..+        +.-+.|+-+.++|||.|..|=.
T Consensus       435 ---ap~eq~DI~VSELLG-SFGDNE--------LSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  435 ---APREQADIIVSELLG-SFGDNE--------LSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             ---CchhhccchHHHhhc-cccCcc--------CCHHHHHHHHhhcCCCceEccc
Confidence               113677888874321 112222        2336788899999999987643

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=83.26  E-value=7.7  Score=32.23  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.+|.+||=.|+ |+ |..+..+++..+          ..|++++.++-  .  .-.++..+  -+..+......+....
T Consensus       134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~  201 (320)
T cd05286         134 VKPGDTVLVHAAAGGVGLLLTQWAKALG----------ATVIGTVSSEEKAELARAAGADHV--INYRDEDFVERVREIT  201 (320)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHCCCCEE--EeCCchhHHHHHHHHc
Confidence            557899999985 33 444455555543          57888876541  0  00122211  1112223333444444


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+..+|+|+....    +              ..+..+.+.|+++|+++.
T Consensus       202 ~~~~~d~vl~~~~----~--------------~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         202 GGRGVDVVYDGVG----K--------------DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             CCCCeeEEEECCC----c--------------HhHHHHHHhhccCcEEEE
Confidence            5567999997221    0              123446778899999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK07576 short chain dehydrogenase; Provisional

Probab=83.21  E-value=24  Score=29.04  Aligned_cols=76  Identities=12%  Similarity=0.068  Sum_probs=46.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.++|-.| |+|+++..+++.+..       ...+|+.++.++-  .       . -..+.++ ..|+++......+.+
T Consensus         8 ~~k~ilItG-asggIG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~i~~~~~   78 (264)
T PRK07576          8 AGKNVVVVG-GTSGINLGIAQAFAR-------AGANVAVASRSQEKVDAAVAQLQQAGPEGLGV-SADVRDYAAVEAAFA   78 (264)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE-ECCCCCHHHHHHHHH
Confidence            467888888 567777777766542       2358999987641  0       0 1235667 889998764433322


Q ss_pred             Hh--CCCCccEEEeCCC
Q psy1489         131 IL--KDDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~--~~~~~D~V~sd~~  145 (229)
                      ..  .-..+|+++.++.
T Consensus        79 ~~~~~~~~iD~vi~~ag   95 (264)
T PRK07576         79 QIADEFGPIDVLVSGAA   95 (264)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            21  1146899998764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.19  E-value=7.8  Score=33.22  Aligned_cols=93  Identities=18%  Similarity=0.130  Sum_probs=50.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.++.+||=.|+|+ |..+..+++..+          .+|+.++.++-  .  .--++..+  -+..+.+....+.. + 
T Consensus       161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G----------~~vi~~~~~~~~~~~~~~~g~~~~--i~~~~~~~~~~~~~-~-  226 (333)
T cd08296         161 AKPGDLVAVQGIGGLGHLAVQYAAKMG----------FRTVAISRGSDKADLARKLGAHHY--IDTSKEDVAEALQE-L-  226 (333)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC----------CeEEEEeCChHHHHHHHHcCCcEE--ecCCCccHHHHHHh-c-
Confidence            46788999999655 444455555543          47888887641  0  00122211  12222222222332 2 


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ..+|+|+.....                 ...+..+.+.|+++|+++.-
T Consensus       227 -~~~d~vi~~~g~-----------------~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         227 -GGAKLILATAPN-----------------AKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             -CCCCEEEECCCc-----------------hHHHHHHHHHcccCCEEEEE
Confidence             358999962210                 12455678889999998853

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=83.18  E-value=15  Score=33.84  Aligned_cols=126  Identities=16%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      -.|.+|+-+|+|+  .+..++++...       -..+|+.+|.++....    .++.+.      +      +.+.+  .
T Consensus       252 LaGKtVgVIG~G~--IGr~vA~rL~a-------~Ga~ViV~e~dp~~a~~A~~~G~~~~------~------leell--~  308 (476)
T PTZ00075        252 IAGKTVVVCGYGD--VGKGCAQALRG-------FGARVVVTEIDPICALQAAMEGYQVV------T------LEDVV--E  308 (476)
T ss_pred             cCCCEEEEECCCH--HHHHHHHHHHH-------CCCEEEEEeCCchhHHHHHhcCceec------c------HHHHH--h
Confidence            3689999999997  44444444321       2358999988762211    122211      1      12222  2


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHH-HHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC-CeeEEEcCCCC-
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVI-RFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY-SQVKILKPPSS-  212 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l-~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F-~~v~~~kp~~s-  212 (229)
                      ..|+|+.-.     |..            .++ ......+|||+.++-. -.+ +.+..+..|+..= ..+...+|... 
T Consensus       309 ~ADIVI~at-----Gt~------------~iI~~e~~~~MKpGAiLINv-Gr~-d~Ei~i~aL~~~~~vdv~evep~v~~  369 (476)
T PTZ00075        309 TADIFVTAT-----GNK------------DIITLEHMRRMKNNAIVGNI-GHF-DNEIQVAELEAYPGIEIVEIKPQVDR  369 (476)
T ss_pred             cCCEEEECC-----Ccc------------cccCHHHHhccCCCcEEEEc-CCC-chHHhHHHHHhcCCceeecccCCCCe
Confidence            589999832     211            122 2467789999998752 222 2233334454422 23445556443 


Q ss_pred             --CCCCceEEEEeccCC
Q psy1489         213 --RSHSAELFLLGRGFK  227 (229)
Q Consensus       213 --r~~s~E~Y~v~~~~~  227 (229)
                        -++-..+|+++.|..
T Consensus       370 ~~~~~g~~i~llaeGrl  386 (476)
T PTZ00075        370 YTFPDGKGIILLAEGRL  386 (476)
T ss_pred             EEeCCCCEEEEEeCCCc
Confidence              245678999999875

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=83.16  E-value=31  Score=30.63  Aligned_cols=75  Identities=27%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+.+||-.| |+|.++..+++.+..       ...+|++++.++-  .          ..++++++ .+|+++++....+
T Consensus        59 ~~~kVLVtG-atG~IG~~l~~~Ll~-------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl~d~~~l~~~  129 (390)
T PLN02657         59 KDVTVLVVG-ATGYIGKFVVRELVR-------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVV-FGDVTDADSLRKV  129 (390)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHH-------CCCEEEEEEechhhccccchhhHHhhhcCCceEE-EeeCCCHHHHHHH
Confidence            467899888 689998888876642       2247888887541  1          12467888 9999997655443


Q ss_pred             HHHhCCCCccEEEeCCC
Q psy1489         129 VTILKDDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~  145 (229)
                      .... ...+|+|++...
T Consensus       130 ~~~~-~~~~D~Vi~~aa  145 (390)
T PLN02657        130 LFSE-GDPVDVVVSCLA  145 (390)
T ss_pred             HHHh-CCCCcEEEECCc
Confidence            3211 116999997554

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.12  E-value=25  Score=29.02  Aligned_cols=77  Identities=25%  Similarity=0.194  Sum_probs=46.1

Q ss_pred             CCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|+.+|--|++.| +++..+++.+..       ...+|+.++.++.     .    ......++ +.|+.+.+....+.+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~-------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~-~~Dv~~~~~v~~~~~   78 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKK-------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVS-ELDVTNPKSISNLFD   78 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHH-------cCCEEEEEeCchHHHHHHHHHHHhcCCceEE-EccCCCHHHHHHHHH
Confidence            3577888899875 677676665531       2247777765520     0    11223356 789999765544333


Q ss_pred             HhC--CCCccEEEeCCC
Q psy1489         131 ILK--DDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~  145 (229)
                      .+.  -+.+|+++.++.
T Consensus        79 ~~~~~~g~iDilVnnag   95 (260)
T PRK06603         79 DIKEKWGSFDFLLHGMA   95 (260)
T ss_pred             HHHHHcCCccEEEEccc
Confidence            221  157999998775

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.01  E-value=9.8  Score=32.55  Aligned_cols=96  Identities=22%  Similarity=0.234  Sum_probs=55.2

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+||=.|+++  |..+..+++..+          .+|+.+..++-  ..+  -++..+  -+..+.+....+....
T Consensus       163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~  230 (341)
T cd08297         163 LKPGDWVVISGAGGGLGHLGVQYAKAMG----------LRVIAIDVGDEKLELAKELGADAF--VDFKKSDDVEAVKELT  230 (341)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHHHHcCCcEE--EcCCCccHHHHHHHHh
Confidence            56789999998865  455555666553          47888876641  000  122211  1222223333455445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ++..+|+|+.+...                 ...+..+.+.|+++|+++..
T Consensus       231 ~~~~vd~vl~~~~~-----------------~~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         231 GGGGAHAVVVTAVS-----------------AAAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             cCCCCCEEEEcCCc-----------------hHHHHHHHHHhhcCCEEEEe
Confidence            56679999963211                 12345577889999999864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK05693 short chain dehydrogenase; Provisional

Probab=82.91  E-value=25  Score=29.02  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh--CCCCc
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL--KDDKL  137 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~--~~~~~  137 (229)
                      ++|-.|+ +|+++..+++.+..       ...+|++++.++-  ..  -.++.++ ..|+.+.+....+.+..  ..+.+
T Consensus         3 ~vlItGa-sggiG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~i   73 (274)
T PRK05693          3 VVLITGC-SSGIGRALADAFKA-------AGYEVWATARKAEDVEALAAAGFTAV-QLDVNDGAALARLAEELEAEHGGL   73 (274)
T ss_pred             EEEEecC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHCCCeEE-EeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5666675 67777777776642       2358999887651  11  1246677 89999876544333222  12468


Q ss_pred             cEEEeCCCC
Q psy1489         138 DVVLSDMAP  146 (229)
Q Consensus       138 D~V~sd~~~  146 (229)
                      |+|+.+...
T Consensus        74 d~vi~~ag~   82 (274)
T PRK05693         74 DVLINNAGY   82 (274)
T ss_pred             CEEEECCCC
Confidence            999998754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=82.55  E-value=26  Score=28.85  Aligned_cols=78  Identities=19%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--------C----CCCCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--------Y----PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--------~----~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|-.|++ +++++..+++.+..       ...+|+.++.+.-        .    ....+.++ +.|+.+.+....
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~-------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~v~~   76 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHA-------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFL-PCDVQDDAQIEE   76 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHH-------CCCEEEEEecCcccchHHHHHHHHHhccCcceEe-ecCcCCHHHHHH
Confidence            46789999995 68899888887752       2246655543210        0    11234567 899999765544


Q ss_pred             HHHHhC--CCCccEEEeCCCC
Q psy1489         128 LVTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~~--~~~~D~V~sd~~~  146 (229)
                      +.+.+.  -+.+|+++.+...
T Consensus        77 ~~~~~~~~~g~iD~lv~nag~   97 (258)
T PRK07370         77 TFETIKQKWGKLDILVHCLAF   97 (258)
T ss_pred             HHHHHHHHcCCCCEEEEcccc
Confidence            333221  1479999988753

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=82.54  E-value=9.7  Score=32.82  Aligned_cols=96  Identities=15%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.+|.+||=.|+|. |..+..+++..|         ...++++|.++..    .-.++..+  -+.........+....+
T Consensus       172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~  240 (350)
T cd08256         172 IKFDDVVVLAGAGPLGLGMIGAARLKN---------PKKLIVLDLKDERLALARKFGADVV--LNPPEVDVVEKIKELTG  240 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEEcCCHHHHHHHHHcCCcEE--ecCCCcCHHHHHHHHhC
Confidence            45788887755533 333444555543         2357888876511    00122211  12222233334544455


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +..+|+|+.-..     .            ...+..+.+.|+++|+++.
T Consensus       241 ~~~vdvvld~~g-----~------------~~~~~~~~~~l~~~G~~v~  272 (350)
T cd08256         241 GYGCDIYIEATG-----H------------PSAVEQGLNMIRKLGRFVE  272 (350)
T ss_pred             CCCCCEEEECCC-----C------------hHHHHHHHHHhhcCCEEEE
Confidence            557999986221     0            0234557888999999875

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK06181 short chain dehydrogenase; Provisional

Probab=82.49  E-value=17  Score=29.68  Aligned_cols=75  Identities=12%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      .+||-.| |+|+++..+++.+..       ...+|++++.++-  .       . -..+.+. .+|+.+......+.+..
T Consensus         2 ~~vlVtG-asg~iG~~la~~l~~-------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~~~~~~~~~   72 (263)
T PRK06181          2 KVVIITG-ASEGIGRALAVRLAR-------AGAQLVLAARNETRLASLAQELADHGGEALVV-PTDVSDAEACERLIEAA   72 (263)
T ss_pred             CEEEEec-CCcHHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHH
Confidence            4577666 556777777766532       2358999988741  0       0 1246677 89999876443332221


Q ss_pred             C--CCCccEEEeCCCC
Q psy1489         133 K--DDKLDVVLSDMAP  146 (229)
Q Consensus       133 ~--~~~~D~V~sd~~~  146 (229)
                      .  -...|.|+.....
T Consensus        73 ~~~~~~id~vi~~ag~   88 (263)
T PRK06181         73 VARFGGIDILVNNAGI   88 (263)
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1  1368999987653

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=82.29  E-value=10  Score=32.50  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.+|.+||=.|||+ |..+..+++..+         ...+++++.++..    .--++..+  -|..+......+....+
T Consensus       166 ~~~g~~vlI~g~g~vg~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~~~ga~~v--~~~~~~~~~~~i~~~~~  234 (345)
T cd08287         166 VRPGSTVVVVGDGAVGLCAVLAAKRLG---------AERIIAMSRHEDRQALAREFGATDI--VAERGEEAVARVRELTG  234 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCceE--ecCCcccHHHHHHHhcC
Confidence            45688888777654 444455555543         2358888876410    00122221  12222233334554455


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+++.-.     |.            ...+..+.+.|+++|+++..
T Consensus       235 ~~~~d~il~~~-----g~------------~~~~~~~~~~l~~~g~~v~~  267 (345)
T cd08287         235 GVGADAVLECV-----GT------------QESMEQAIAIARPGGRVGYV  267 (345)
T ss_pred             CCCCCEEEECC-----CC------------HHHHHHHHHhhccCCEEEEe
Confidence            56799999622     10            12456688889999998753

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=82.25  E-value=9.1  Score=32.03  Aligned_cols=91  Identities=22%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             cCCCCeeEeecCC-C-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAA-P-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcG-p-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=.|++ + |..+..+++..+          .+|+++..++-    ..-.++..+ ..+  .......+... 
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~~~i~~~-  205 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKALG----------ATVTATTRSPERAALLKELGADEV-VID--DGAIAEQLRAA-  205 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHhcCCcEE-Eec--CccHHHHHHHh-
Confidence            5678999988872 2 455555666543          57888876651    000122222 112  11223334443 


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                       +..+|+|+....                  ...+..+.+.|+++|+++.
T Consensus       206 -~~~~d~vl~~~~------------------~~~~~~~~~~l~~~g~~v~  236 (320)
T cd08243         206 -PGGFDKVLELVG------------------TATLKDSLRHLRPGGIVCM  236 (320)
T ss_pred             -CCCceEEEECCC------------------hHHHHHHHHHhccCCEEEE
Confidence             567999996321                  0234557788999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=82.23  E-value=3.7  Score=36.06  Aligned_cols=105  Identities=23%  Similarity=0.308  Sum_probs=53.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.+|++||-.|+|+ |..+..+++..+         ..+|+++|.++..    .--++..+   |..+......+....+
T Consensus       174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G---------~~~vi~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~i~~~~~  241 (375)
T cd08282         174 VQPGDTVAVFGAGPVGLMAAYSAILRG---------ASRVYVVDHVPERLDLAESIGAIPI---DFSDGDPVEQILGLEP  241 (375)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCeEe---ccCcccHHHHHHHhhC
Confidence            45788888877754 444444555432         2378888876510    00122222   3333333333444333


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                       ..+|+|+.-...... .++.+     ......+..+.+.|+++|++++
T Consensus       242 -~~~d~v~d~~g~~~~-~~~~~-----~~~~~~~~~~~~~l~~~g~~~~  283 (375)
T cd08282         242 -GGVDRAVDCVGYEAR-DRGGE-----AQPNLVLNQLIRVTRPGGGIGI  283 (375)
T ss_pred             -CCCCEEEECCCCccc-ccccc-----cchHHHHHHHHHHhhcCcEEEE
Confidence             569999873321100 00000     0012346678889999999864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=82.16  E-value=8.1  Score=33.05  Aligned_cols=95  Identities=22%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|.+||=.|+|. |..+..+++..+          .+ |++++.++-  ...  -++ .++   +..+......+...
T Consensus       163 ~~~g~~VlV~g~g~vg~~~~~la~~~g----------~~~v~~~~~s~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~~  229 (343)
T cd08235         163 IKPGDTVLVIGAGPIGLLHAMLAKASG----------ARKVIVSDLNEFRLEFAKKLGADYTI---DAAEEDLVEKVREL  229 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCCcEEe---cCCccCHHHHHHHH
Confidence            56889999887542 333344444432          34 777766541  000  111 222   22233333445555


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       230 ~~~~~vd~vld~~~~-----------------~~~~~~~~~~l~~~g~~v~~  264 (343)
T cd08235         230 TDGRGADVVIVATGS-----------------PEAQAQALELVRKGGRILFF  264 (343)
T ss_pred             hCCcCCCEEEECCCC-----------------hHHHHHHHHHhhcCCEEEEE
Confidence            556679999973210                 12345567789999998863

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK08267 short chain dehydrogenase; Provisional

Probab=82.08  E-value=25  Score=28.73  Aligned_cols=74  Identities=18%  Similarity=0.127  Sum_probs=46.2

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC--CCCeEEecCCCCChhHHHHHHH-HhC-
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI--DGAVVLSKCDFTQPDIQDRLVT-ILK-  133 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~--~~~~~~~~~D~~~~~~~~~i~~-~~~-  133 (229)
                      ++|-.|++ |+++..+++.+..       ...+|+.++.++-  .    .+  ..+.++ ++|+.+.+....+.. ... 
T Consensus         3 ~vlItGas-g~iG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~   73 (260)
T PRK08267          3 SIFITGAA-SGIGRATALLFAA-------EGWRVGAYDINEAGLAALAAELGAGNAWTG-ALDVTDRAAWDAALADFAAA   73 (260)
T ss_pred             EEEEeCCC-chHHHHHHHHHHH-------CCCeEEEEeCCHHHHHHHHHHhcCCceEEE-EecCCCHHHHHHHHHHHHHH
Confidence            57777755 6777777776542       2248888887651  1    11  247788 999998764443322 211 


Q ss_pred             -CCCccEEEeCCCC
Q psy1489         134 -DDKLDVVLSDMAP  146 (229)
Q Consensus       134 -~~~~D~V~sd~~~  146 (229)
                       .+++|+|+.++..
T Consensus        74 ~~~~id~vi~~ag~   87 (260)
T PRK08267         74 TGGRLDVLFNNAGI   87 (260)
T ss_pred             cCCCCCEEEECCCC
Confidence             3578999987753

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=82.01  E-value=14  Score=32.43  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCC-eEEecCCCCCh-hHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGA-VVLSKCDFTQP-DIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~-~~~~~~D~~~~-~~~~~i~~~~  132 (229)
                      .++|++|.-+|||-=+++.....+..        ...+++|||+++-    ..-.++ +++   |-.+. +..+.+.+..
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~a--------gA~~IiAvD~~~~Kl~~A~~fGAT~~v---n~~~~~~vv~~i~~~T  251 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAA--------GAGRIIAVDINPEKLELAKKFGATHFV---NPKEVDDVVEAIVELT  251 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHc--------CCceEEEEeCCHHHHHHHHhcCCceee---cchhhhhHHHHHHHhc
Confidence            46789999999988555544444443        5679999999971    111222 233   11122 3444455433


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                       +...|.++--     .|.            ..+++.+...+.++|..++.-..
T Consensus       252 -~gG~d~~~e~-----~G~------------~~~~~~al~~~~~~G~~v~iGv~  287 (366)
T COG1062         252 -DGGADYAFEC-----VGN------------VEVMRQALEATHRGGTSVIIGVA  287 (366)
T ss_pred             -CCCCCEEEEc-----cCC------------HHHHHHHHHHHhcCCeEEEEecC
Confidence             4467887641     121            13556677778789988875443

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=81.76  E-value=9.4  Score=31.79  Aligned_cols=94  Identities=23%  Similarity=0.298  Sum_probs=50.4

Q ss_pred             cCCCCeeEeecCCCCchH---HHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWS---QVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s---~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +.++.+||-.|| +|.+.   ..+++..+          ..|+.++.++-  ..+  .++...  -+..+.+....+...
T Consensus       137 ~~~~~~vli~g~-~~~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~i~~~  203 (323)
T cd08241         137 LQPGETVLVLGA-AGGVGLAAVQLAKALG----------ARVIAAASSEEKLALARALGADHV--IDYRDPDLRERVKAL  203 (323)
T ss_pred             CCCCCEEEEEcC-CchHHHHHHHHHHHhC----------CEEEEEeCCHHHHHHHHHcCCcee--eecCCccHHHHHHHH
Confidence            567899999998 34443   44444433          47888877641  000  122111  111122233344444


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+++.....                  ..+..+.+.++++|+++..
T Consensus       204 ~~~~~~d~v~~~~g~------------------~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         204 TGGRGVDVVYDPVGG------------------DVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             cCCCCcEEEEECccH------------------HHHHHHHHhhccCCEEEEE
Confidence            455679999873210                  1234466778899988753

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=81.76  E-value=8.9  Score=31.26  Aligned_cols=83  Identities=14%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             cEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHH--HHHHHHHHHHHHH
Q psy1489          95 GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI--TQLAIAVIRFAVT  172 (229)
Q Consensus        95 ~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~--~~~~~~~l~~~~~  172 (229)
                      .+|+.+|.++. ......++ +.|+.+.+....+.+.+. +.+|+++.++...  .....+....  ..-....++.+..
T Consensus        10 ~~Vv~~~r~~~-~~~~~~~~-~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~--~~~~~~~~~~vN~~~~~~l~~~~~~   84 (241)
T PRK12428         10 ARVIGVDRREP-GMTLDGFI-QADLGDPASIDAAVAALP-GRIDALFNIAGVP--GTAPVELVARVNFLGLRHLTEALLP   84 (241)
T ss_pred             CEEEEEeCCcc-hhhhhHhh-cccCCCHHHHHHHHHHhc-CCCeEEEECCCCC--CCCCHHHhhhhchHHHHHHHHHHHH
Confidence            58888888752 12223456 899998765544443332 5799999987532  1111111111  1111234455566


Q ss_pred             cccCCCEEEE
Q psy1489         173 YSKPGADCLI  182 (229)
Q Consensus       173 ~LkpgG~~v~  182 (229)
                      .++++|+++.
T Consensus        85 ~~~~~g~Iv~   94 (241)
T PRK12428         85 RMAPGGAIVN   94 (241)
T ss_pred             hccCCcEEEE
Confidence            6677788775

>PRK08324 short chain dehydrogenase; Validated

Probab=81.72  E-value=21  Score=34.30  Aligned_cols=76  Identities=21%  Similarity=0.226  Sum_probs=47.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---CCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +|+.||-.|+ +|+++..+++.+..       ...+|+.+|.++-  .    .+   .++.++ ..|+++.+....+.+.
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~-------~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v-~~Dvtd~~~v~~~~~~  491 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAA-------EGACVVLADLDEEAAEAAAAELGGPDRALGV-ACDVTDEAAVQAAFEE  491 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHH-------CcCEEEEEeCCHHHHHHHHHHHhccCcEEEE-EecCCCHHHHHHHHHH
Confidence            4678888876 45666666665532       2258999998751  0    01   256677 8999987644433221


Q ss_pred             h--CCCCccEEEeCCC
Q psy1489         132 L--KDDKLDVVLSDMA  145 (229)
Q Consensus       132 ~--~~~~~D~V~sd~~  145 (229)
                      .  .-+.+|+|+.+..
T Consensus       492 ~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        492 AALAFGGVDIVVSNAG  507 (681)
T ss_pred             HHHHcCCCCEEEECCC
Confidence            1  1246999998775

>PRK07985 oxidoreductase; Provisional

Probab=81.70  E-value=31  Score=29.13  Aligned_cols=76  Identities=17%  Similarity=0.014  Sum_probs=45.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CC-----------CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YP-----------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~-----------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++++|-.|+ +|+++..+++.+..       ...+|+.++.+.- ..           -..+.++ ..|+.+.+....+
T Consensus        48 ~~k~vlITGa-s~gIG~aia~~L~~-------~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~  118 (294)
T PRK07985         48 KDRKALVTGG-DSGIGRAAAIAYAR-------EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLL-PGDLSDEKFARSL  118 (294)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHH-------CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEE-EccCCCHHHHHHH
Confidence            4578998885 57777777776642       2347777765421 10           0135567 8999987644333


Q ss_pred             HHHh--CCCCccEEEeCCC
Q psy1489         129 VTIL--KDDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~--~~~~~D~V~sd~~  145 (229)
                      .+..  .-+..|+++.++.
T Consensus       119 ~~~~~~~~g~id~lv~~Ag  137 (294)
T PRK07985        119 VHEAHKALGGLDIMALVAG  137 (294)
T ss_pred             HHHHHHHhCCCCEEEECCC
Confidence            2211  1246899998764

>PRK07814 short chain dehydrogenase; Provisional

Probab=81.48  E-value=21  Score=29.41  Aligned_cols=76  Identities=16%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.++|-.|+ +|+.+..+++.+..       ...+|+.++.++-  ..        -..+.++ ..|+++......+.+
T Consensus         9 ~~~~vlItGa-sggIG~~~a~~l~~-------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~   79 (263)
T PRK07814          9 DDQVAVVTGA-GRGLGAAIALAFAE-------AGADVLIAARTESQLDEVAEQIRAAGRRAHVV-AADLAHPEATAGLAG   79 (263)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHH
Confidence            4678888884 67788877776642       2358888887651  10        1246677 899999765433322


Q ss_pred             Hh-C-CCCccEEEeCCC
Q psy1489         131 IL-K-DDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~-~-~~~~D~V~sd~~  145 (229)
                      .. . -+.+|+|+..+.
T Consensus        80 ~~~~~~~~id~vi~~Ag   96 (263)
T PRK07814         80 QAVEAFGRLDIVVNNVG   96 (263)
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            11 1 146899998764

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=81.39  E-value=15  Score=31.34  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=51.4

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+||=+|+|+ |..+..+++..+         ..+|++++.++-  ..+  -++ .++   +..+. ....+....
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g---------~~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~-~~~~i~~~~  231 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALT---------PATVIAVDRSEEALKLAERLGADHVL---NASDD-VVEEVRELT  231 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHhCCcEEE---cCCcc-HHHHHHHHh
Confidence            45789999998654 333333444432         247888876641  000  122 122   11222 333344445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+...     |.            ...+..+.+.|+++|+++..
T Consensus       232 ~~~~~dvvld~~-----g~------------~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         232 GGRGADAVIDFV-----GS------------DETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             CCCCCCEEEEcC-----CC------------HHHHHHHHHHhhcCCEEEEE
Confidence            556799999722     10            12345577889999998853

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=81.24  E-value=14  Score=31.23  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=51.8

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CCCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IYPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +.+|.+||=.|+..  |..+..+++..|          ..++.+.-+.     +... ++..+  -+..+......+...
T Consensus       137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G----------~~v~~~~~~~~~~~~~~~~-g~~~~--~~~~~~~~~~~i~~~  203 (324)
T cd08292         137 VKPGQWLIQNAAGGAVGKLVAMLAAARG----------INVINLVRRDAGVAELRAL-GIGPV--VSTEQPGWQDKVREA  203 (324)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCC----------CeEEEEecCHHHHHHHHhc-CCCEE--EcCCCchHHHHHHHH
Confidence            56789999887632  555555666553          4555554332     1111 33222  122333334445555


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+|+...     |.             ..+..+.+.|+++|+++..
T Consensus       204 ~~~~~~d~v~d~~-----g~-------------~~~~~~~~~l~~~g~~v~~  237 (324)
T cd08292         204 AGGAPISVALDSV-----GG-------------KLAGELLSLLGEGGTLVSF  237 (324)
T ss_pred             hCCCCCcEEEECC-----CC-------------hhHHHHHHhhcCCcEEEEE
Confidence            5566799999632     11             1234567889999998853

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK08264 short chain dehydrogenase; Validated

Probab=81.21  E-value=26  Score=28.05  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCCCC---CCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPIYP---IDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .+.+||=.|+ +|+.+..+++.+..       ... +|+.++.++...   -.++.++ .+|+.+.+....+.+.+  ..
T Consensus         5 ~~~~vlItGg-sg~iG~~la~~l~~-------~G~~~V~~~~r~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~--~~   73 (238)
T PRK08264          5 KGKVVLVTGA-NRGIGRAFVEQLLA-------RGAAKVYAAARDPESVTDLGPRVVPL-QLDVTDPASVAAAAEAA--SD   73 (238)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHH-------CCcccEEEEecChhhhhhcCCceEEE-EecCCCHHHHHHHHHhc--CC
Confidence            3568888884 77788777776642       223 788888765211   1357788 89999876554444332  35


Q ss_pred             ccEEEeCCCC
Q psy1489         137 LDVVLSDMAP  146 (229)
Q Consensus       137 ~D~V~sd~~~  146 (229)
                      +|+|+.....
T Consensus        74 id~vi~~ag~   83 (238)
T PRK08264         74 VTILVNNAGI   83 (238)
T ss_pred             CCEEEECCCc
Confidence            8999987754

>PRK06128 oxidoreductase; Provisional

Probab=80.99  E-value=33  Score=28.96  Aligned_cols=113  Identities=15%  Similarity=0.071  Sum_probs=60.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CC-----------CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YP-----------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~-----------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.++.+.- ..           -..+.++ .+|+.+......+
T Consensus        54 ~~k~vlITGa-s~gIG~~~a~~l~~-------~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~  124 (300)
T PRK06128         54 QGRKALITGA-DSGIGRATAIAFAR-------EGADIALNYLPEEEQDAAEVVQLIQAEGRKAVAL-PGDLKDEAFCRQL  124 (300)
T ss_pred             CCCEEEEecC-CCcHHHHHHHHHHH-------cCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEE-ecCCCCHHHHHHH
Confidence            3578888884 67777777776642       2246666554321 00           1135567 8999997654433


Q ss_pred             HHHhC--CCCccEEEeCCCCCC--CCCCccc--HHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         129 VTILK--DDKLDVVLSDMAPNA--TGMREMD--HDL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~~~--~g~~~~d--~~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+...  -+..|+++.+.....  ....+.+  .+. .+.    -....++.+...++++|.++.
T Consensus       125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~  189 (300)
T PRK06128        125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN  189 (300)
T ss_pred             HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence            22111  136899999875321  1111111  111 111    111345556667778888765

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=80.88  E-value=11  Score=32.64  Aligned_cols=63  Identities=14%  Similarity=0.025  Sum_probs=40.3

Q ss_pred             eEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      |+||-||-|+++.-+.+. |         --.+.++|+++.      ...++ ..+ .+|+.+....     .++  .+|
T Consensus         1 vidLF~G~GG~~~Gl~~a-G---------~~~~~a~e~~~~a~~ty~~N~~~-~~~-~~Di~~~~~~-----~~~--~~d   61 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-G---------FKCVFASEIDKYAQKTYEANFGN-KVP-FGDITKISPS-----DIP--DFD   61 (315)
T ss_pred             CEEEecCccHHHHHHHHc-C---------CeEEEEEeCCHHHHHHHHHhCCC-CCC-ccChhhhhhh-----hCC--CcC
Confidence            689999999999887542 2         235678999861      12233 344 6777764311     122  589


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++...++
T Consensus        62 vl~gg~PC   69 (315)
T TIGR00675        62 ILLGGFPC   69 (315)
T ss_pred             EEEecCCC
Confidence            99987654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=80.68  E-value=7.6  Score=32.96  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=49.8

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCC-eEEecCCCCChhHHHHHHHHhCCC
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGA-VVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~-~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      +++|.+||=+|+ |+ |..+..+++..|          .+|++++......--++ .++ ..  .+  ....+....  +
T Consensus       160 ~~~g~~vlI~g~~g~vg~~~~~~a~~~G----------~~v~~~~~~~~~~~~g~~~~~-~~--~~--~~~~l~~~~--~  222 (325)
T cd08264         160 LGPGETVVVFGASGNTGIFAVQLAKMMG----------AEVIAVSRKDWLKEFGADEVV-DY--DE--VEEKVKEIT--K  222 (325)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcC----------CeEEEEeHHHHHHHhCCCeee-cc--hH--HHHHHHHHh--C
Confidence            567899999987 44 555555565543          46777764321110112 122 11  11  122233333  5


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+|+|+...     |     .        ..+..+.+.|+++|+++..
T Consensus       223 ~~d~vl~~~-----g-----~--------~~~~~~~~~l~~~g~~v~~  252 (325)
T cd08264         223 MADVVINSL-----G-----S--------SFWDLSLSVLGRGGRLVTF  252 (325)
T ss_pred             CCCEEEECC-----C-----H--------HHHHHHHHhhccCCEEEEE
Confidence            699999722     1     0        2355688899999999853

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=80.65  E-value=32  Score=29.47  Aligned_cols=74  Identities=19%  Similarity=0.083  Sum_probs=46.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCC-----------CCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPI-----------DGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~-----------~~~~~~~~~D~~~~~~~  125 (229)
                      ++++||-.|+ +|.++.++++.+..       ...+|++++..+.    ..+           ..+.++ .+|+++....
T Consensus         5 ~~~~vlVTGa-tGfiG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~   75 (340)
T PLN02653          5 PRKVALITGI-TGQDGSYLTEFLLS-------KGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-YGDLSDASSL   75 (340)
T ss_pred             CCCEEEEECC-CCccHHHHHHHHHH-------CCCEEEEEecccccccccchhhhccccccccCceEEE-EecCCCHHHH
Confidence            3567887774 77888888877642       2347888876431    011           236677 8999986544


Q ss_pred             HHHHHHhCCCCccEEEeCCCC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      ..+   +....+|+|+..+..
T Consensus        76 ~~~---~~~~~~d~Vih~A~~   93 (340)
T PLN02653         76 RRW---LDDIKPDEVYNLAAQ   93 (340)
T ss_pred             HHH---HHHcCCCEEEECCcc
Confidence            333   223358999987653

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=80.44  E-value=9.7  Score=32.37  Aligned_cols=93  Identities=23%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +.+|.+||.+|+|. |..+..+++..+          .+ |+.++.++-.    .-.++ .++ ..  .+......  ..
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G----------~~~v~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~--~~  221 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNG----------ASRVTVAEPNEEKLELAKKLGATETV-DP--SREDPEAQ--KE  221 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCCeEEe-cC--CCCCHHHH--HH
Confidence            46789999997532 333344444432          34 7777766410    00122 222 22  22211111  22


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+|+.....                 ...+..+.+.|+++|+++..
T Consensus       222 ~~~~~vd~v~~~~~~-----------------~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         222 DNPYGFDVVIEATGV-----------------PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             hcCCCCcEEEECCCC-----------------hHHHHHHHHHHhcCCEEEEE
Confidence            445679999973210                 12455577889999998753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=80.38  E-value=24  Score=28.89  Aligned_cols=77  Identities=12%  Similarity=0.067  Sum_probs=47.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------P-IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------~-~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      .++++|-.|++ |+++..+++++..       ...+|+.++.++..       . -..+.++ ..|+++.+....+.+..
T Consensus         7 ~~k~~lItGas-~gIG~aia~~l~~-------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~   77 (251)
T PRK12481          7 NGKVAIITGCN-TGLGQGMAIGLAK-------AGADIVGVGVAEAPETQAQVEALGRKFHFI-TADLIQQKDIDSIVSQA   77 (251)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHH-------CCCEEEEecCchHHHHHHHHHHcCCeEEEE-EeCCCCHHHHHHHHHHH
Confidence            46789988864 5677777766542       23578877765311       0 1235677 89999976554433321


Q ss_pred             C--CCCccEEEeCCCC
Q psy1489         133 K--DDKLDVVLSDMAP  146 (229)
Q Consensus       133 ~--~~~~D~V~sd~~~  146 (229)
                      .  -+..|+++.++..
T Consensus        78 ~~~~g~iD~lv~~ag~   93 (251)
T PRK12481         78 VEVMGHIDILINNAGI   93 (251)
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1  2468999987753

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=80.22  E-value=12  Score=31.89  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=49.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|.+||=.|+|+ |..+..+++..         ...+|++++.++-  ..+  -++. ++ ... ........+....
T Consensus       160 ~~~g~~vlV~g~g~vG~~~~~la~~~---------~g~~v~~~~~~~~~~~~~~~~g~~~v~-~~~-~~~~~~~~v~~~~  228 (338)
T PRK09422        160 IKPGQWIAIYGAGGLGNLALQYAKNV---------FNAKVIAVDINDDKLALAKEVGADLTI-NSK-RVEDVAKIIQEKT  228 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHh---------CCCeEEEEeCChHHHHHHHHcCCcEEe-ccc-ccccHHHHHHHhc
Confidence            56789999999654 44555555543         1257888877651  000  1222 22 111 1112222333333


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .  .+|.++-+...                 ...+..+.+.|+++|+++.-
T Consensus       229 ~--~~d~vi~~~~~-----------------~~~~~~~~~~l~~~G~~v~~  260 (338)
T PRK09422        229 G--GAHAAVVTAVA-----------------KAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             C--CCcEEEEeCCC-----------------HHHHHHHHHhccCCCEEEEE
Confidence            2  47854432210                 12456688889999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
2nyu_A	196	Crystal Structure Of Human Ftsj Homolog 2 (E.Coli)		7e-44
1eiz_A	180	Ftsj Rna Methyltransferase Complexed With S- Adenos		1e-19
2plw_A	201	Crystal Structure Of A Ribosomal Rna Methyltransfer		3e-15
3dou_A	191	Crystal Structure Of Methyltransferase Involved In		3e-13

>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein In Complex With S-Adenosylmethionine Length = 196

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 116/190 (61%)
Query: 40  NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
           +YR RSAFKLLE++ + + LRPGL+VLDCGAAPG+WSQVAV+ VN+ G D   P G VL 
Sbjct: 1   SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLG 60
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXXXXXXXXXXSDMAPNATGMREMDHDLI 159
           VD L I+P++GA  L   D T P    R++ +          SDMAPNATG R++DHD +
Sbjct: 61  VDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRL 120
Query: 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAEL 219
             L + ++       +PG   L K W G    +L+  +T  +  V+I+KP +SR  S+E+
Sbjct: 121 ISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEV 180
Query: 220 FLLGRGFKGK 229
           + L   + G+
Sbjct: 181 YFLATQYHGR 190

>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S- Adenosylmethionine Length = 180

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 40  NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
             R R+ FKL EI    K  +PG+ V+D GAAPG WSQ  V  +          KG +++
Sbjct: 1   GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG--------KGRIIA 52
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIXXX-----XXXXXXXSDMAPNATGMREM 154
            D LP+ PI G       DF Q D +D LV                 SDMAPN +G   +
Sbjct: 53  CDLLPMDPIVG------VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAV 106
Query: 155 D---HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPS 211
           D      + +LA+ + R  +    PG   ++K++ G    +    I   +++VK+ KP S
Sbjct: 107 DIPRAMYLVELALEMCRDVLA---PGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDS 163
Query: 212 SRSHSAELFLLGRGFK 227
           SR+ S E++++  G K
Sbjct: 164 SRARSREVYIVATGRK 179

>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase, Putative, From Plasmodium Falciparum (Pf13_0052) Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 23/206 (11%)
Query: 40  NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
           NYR R+A+KL+E+D+K  FL+    +LD G  PGSW QV ++        +K  K  ++ 
Sbjct: 1   NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILE-------RTKNYKNKIIG 53
Query: 100 VDK-----LP-IYPIDGAVVLSKC----------DFTQPDIQDRLVTIXXXXXXXXXXSD 143
           +DK     +P +Y I G +               +     +  +L  I          SD
Sbjct: 54  IDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSD 113
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
            A    G +  DH    +L +++  F   Y   G   ++K++ G     L+  +   +  
Sbjct: 114 AAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQL 173
Query: 204 VKILKPPSSRSHSAELFLLGRGFKGK 229
           V   KP +SR+ S E++L+ + F G+
Sbjct: 174 VHTTKPKASRNESREIYLVCKNFLGR 199

>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell Division From Thermoplasma Volcanicum Gss1 Length = 191

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Query: 42  RCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVD 101
           R R+AFKL  +  + + +R G  V++ G++PG W+QV   L              ++S+D
Sbjct: 6   RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARK-----------IISID 54
Query: 102 KLPIYPIDGAVVLSKCDFTQPDI---QDRLVTIXXXXXXXXXXSDMAPNATGMREMDHDL 158
                 I G V   +CD  +  I    DR +            SD     +G+   DH +
Sbjct: 55  LQEXEEIAG-VRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAXAKVSGIPSRDHAV 113
Query: 159 ITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAE 218
             Q+   V   AV Y + G + L+K + G           + +S  KI KPP+SR  S+E
Sbjct: 114 SYQIGQRVXEIAVRYLRNGGNVLLKQFQGDXTNDFIAIWRKNFSSYKISKPPASRGSSSE 173
Query: 219 LFLLGRGFKGK 229
           +++   GFK +
Sbjct: 174 IYIXFFGFKAE 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	2e-86
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	6e-77
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	5e-75
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	7e-74
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	2e-41
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	7e-34
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	1e-12
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	1e-08
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	3e-07
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	3e-06
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	4e-06
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	5e-06
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	1e-05
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	6e-05

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196

 Score =  253 bits (649), Expect = 2e-86
 Identities = 86/190 (45%), Positives = 122/190 (64%)

Query: 40  NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
           +YR RSAFKLLE++ + + LRPGL+VLDCGAAPG+WSQVAV+ VN+ G D   P G VL 
Sbjct: 1   SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLG 60

Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI 159
           VD L I+P++GA  L   D T P    R++ +L   + DV+LSDMAPNATG R++DHD +
Sbjct: 61  VDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRL 120

Query: 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAEL 219
             L + ++       +PG   L K W G    +L+  +T  +  V+I+KP +SR  S+E+
Sbjct: 121 ISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEV 180

Query: 220 FLLGRGFKGK 229
           + L   + G+
Sbjct: 181 YFLATQYHGR 190

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180

 Score =  228 bits (585), Expect = 6e-77
 Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 9/187 (4%)

Query: 41  YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSV 100
            R R+ FKL EI    K  +PG+ V+D GAAPG WSQ  V  +          KG +++ 
Sbjct: 2   LRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG--------GKGRIIAC 53

Query: 101 DKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT 160
           D LP+ PI G   L + DF    +   L+  + D K+ VV+SDMAPN +G   +D     
Sbjct: 54  DLLPMDPIVGVDFL-QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112

Query: 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELF 220
            L    +        PG   ++K++ G    +    I   +++VK+ KP SSR+ S E++
Sbjct: 113 YLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 172

Query: 221 LLGRGFK 227
           ++  G K
Sbjct: 173 IVATGRK 179

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Length = 201

 Score =  224 bits (574), Expect = 5e-75
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 25/207 (12%)

Query: 40  NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
           NYR R+A+KL+E+D+K  FL+    +LD G  PGSW QV ++   +        K  ++ 
Sbjct: 1   NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKN-------YKNKIIG 53

Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQD-----------------RLVTILKDDKLDVVLS 142
           +DK  + PI     + + +  + ++ +                 +L  IL+D K+D++LS
Sbjct: 54  IDKKIMDPIPNVYFI-QGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILS 112

Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
           D A    G +  DH    +L +++  F   Y   G   ++K++ G     L+  +   + 
Sbjct: 113 DAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQ 172

Query: 203 QVKILKPPSSRSHSAELFLLGRGFKGK 229
            V   KP +SR+ S E++L+ + F G+
Sbjct: 173 LVHTTKPKASRNESREIYLVCKNFLGR 199

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191

 Score =  221 bits (565), Expect = 7e-74
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 15/195 (7%)

Query: 38  KENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLV 97
               R R+AFKL  +  + + +R G  V++ G++PG W+QV   L              +
Sbjct: 2   SLQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA-----------RKI 50

Query: 98  LSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD---KLDVVLSDMAPNATGMREM 154
           +S+D   +  I G   + +CD  +  I D +   L+++   K+D V+SD     +G+   
Sbjct: 51  ISIDLQEMEEIAGVRFI-RCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSR 109

Query: 155 DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS 214
           DH +  Q+   V+  AV Y + G + L+K + G           + +S  KI KPP+SR 
Sbjct: 110 DHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRG 169

Query: 215 HSAELFLLGRGFKGK 229
            S+E++++  GFK +
Sbjct: 170 SSSEIYIMFFGFKAE 184

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277

 Score =  141 bits (356), Expect = 2e-41
 Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 21/213 (9%)

Query: 22  LWLKRQFADPYVQKAKKE--NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
           + + R  A  ++ + K +      R   KL     +  +++   +V+D G   G W   A
Sbjct: 34  VEVDRDTARRHLAEGKVDTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYA 92

Query: 80  VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139
                  G      KG  L  D     P++  V     +      +  +   L+  K D 
Sbjct: 93  AAQKEVSG-----VKGFTLGRDGHEK-PMN--VQSLGWNIITFKDKTDIHR-LEPVKCDT 143

Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC-LIKIWDGRNRPQLE--ES 196
           +L D+  +++           +  + V+     +   G D   +K+        LE  E 
Sbjct: 144 LLCDIGESSS-----SSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLEL 198

Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
           + R +    I + P SR+ + E++ +       
Sbjct: 199 LQRRFGGTVI-RNPLSRNSTHEMYYVSGARSNV 230

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300

 Score =  122 bits (307), Expect = 7e-34
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 19/207 (9%)

Query: 24  LKRQFADPYV--QKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVK 81
           + R  A  Y+   +        R A K+  +  +  +LR   +VLD G   G WS  A  
Sbjct: 43  VDRTAARRYLKEGRTDVGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAA 101

Query: 82  LVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141
                       KG  L ++     PI    +       +       V  +  +  D +L
Sbjct: 102 QKEVMS-----VKGYTLGIE-GHEKPIHMQTLGWNIVKFKDKSN---VFTMPTEPSDTLL 152

Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE--ESITR 199
            D+  +++         +  L                +  +K+    +   +E  E +  
Sbjct: 153 CDIGESSSNPLVERDRTMKVLENF----ERWKHVNTENFCVKVLAPYHPDVIEKLERLQL 208

Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGF 226
            +    + + P SR+ + E++ +    
Sbjct: 209 RFGGGIV-RVPFSRNSTHEMYYISGAR 234

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* Length = 375

 Score = 65.1 bits (158), Expect = 1e-12
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 40/195 (20%)

Query: 28  FADPYVQKAKKENYRCRSAFKLLE-------IDSKIKFLRPGLKVLDCGAAPGSWSQVAV 80
           F     +     +   RS  KL E        D   + L  G+  +D GA PG W+   V
Sbjct: 171 FYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLV 230

Query: 81  KLVNSHGYDSKQPKGLVLSVDKLPIYPI---DGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
           K               V SVD  P+       G V      + + D             +
Sbjct: 231 KR-----------NMWVYSVDNGPMAQSLMDTGQV-----TWLREDGFKFR---PTRSNI 271

Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
             ++ DM      +  +           + ++ V          +K+   +   ++  ++
Sbjct: 272 SWMVCDMVEKPAKVAAL-----------MAQWLVNGWCRETIFNLKLPMKKRYEEVSHNL 320

Query: 198 TRFYSQVKILKPPSS 212
               +Q+      + 
Sbjct: 321 AYIQAQLDEHGINAQ 335

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* Length = 305

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 24/188 (12%)

Query: 41  YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGLV 97
              R + KL     +   + P  KV+D G   G WS     L N     G     P    
Sbjct: 63  AVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE 121

Query: 98  LSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHD 157
                   + +    + S  D          V  +  ++ D +L D+  ++      +  
Sbjct: 122 PIPMSTYGWNLV--RLQSGVD----------VFFIPPERCDTLLCDIGESSP-----NPT 164

Query: 158 LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ--VKILKPPSSRSH 215
           +     + V+     +        +K+ +      + E +     +    +++ P SR+ 
Sbjct: 165 VEAGRTLRVLNLVENWLSNNTQFCVKVLNP-YMSSVIEKMEALQRKHGGALVRNPLSRNS 223

Query: 216 SAELFLLG 223
           + E++ + 
Sbjct: 224 THEMYWVS 231

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} Length = 282

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 40  NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGL 96
               R + KL  ++ +  +++P   V+D G   G WS  A  L N      +      G+
Sbjct: 70  IAVSRGSAKLRWMEER-GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFT----LGV 124

Query: 97  VLSVDKLPI--YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREM 154
                 +       +      K D          V  ++    D +L D+  ++  +   
Sbjct: 125 QGHEKPIMRTTLGWNLIRFKDKTD----------VFNMEVIPGDTLLCDIGESSPSIAVE 174

Query: 155 DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSS 212
           +   +  L  A             +  IK+      P + E ++R   +    +++ P S
Sbjct: 175 EQRTLRVLNCAKQWLQE---GNYTEFCIKVLCPY-TPLIMEELSRLQLKHGGGLVRVPLS 230

Query: 213 RSHSAELF 220
           R+ + E++
Sbjct: 231 RNSTHEMY 238

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Length = 276

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 28/188 (14%)

Query: 41  YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSV 100
              R   KL  ID +   +     V+D G   GSWS  A    N         K   L  
Sbjct: 63  AVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQPNVREV-----KAYTLGT 116

Query: 101 D------KLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREM 154
                   +  +  +     SK D          VT ++  + D VL D+  +       
Sbjct: 117 SGHEKPRLVETFGWNLITFKSKVD----------VTKMEPFQADTVLCDIGESNPTAAVE 166

Query: 155 DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSS 212
               +T L +            G    +K+ +      + E++ +  ++    +++ P S
Sbjct: 167 ASRTLTVLNVISRWLEY---NQGCGFCVKVLNPY-SCDVLEALMKMQARFGGGLIRVPLS 222

Query: 213 RSHSAELF 220
           R+ + E++
Sbjct: 223 RNSTHEMY 230

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Length = 269

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 41  YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAV--KLVNS-HGYDSKQPKGLV 97
              R   KL  +  + +F++P  KV+D G   G WS  A   K V    GY     KG  
Sbjct: 54  PVSRGTAKLRWLVER-RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYT----KGGP 108

Query: 98  LSVDKLPI--YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
              + + +  Y  +   + S  D          V     +  D +L D+  ++      +
Sbjct: 109 GHEEPMLMQSYGWNIVTMKSGVD----------VFYKPSEISDTLLCDIGESSPSAEIEE 158

Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSR 213
              +  L +     +     P   C IKI      P++ E +     +    +++ P SR
Sbjct: 159 QRTLRILEMVSDWLSR---GPKEFC-IKILCP-YMPKVIEKLESLQRRFGGGLVRVPLSR 213

Query: 214 SHSAELF 220
           + + E++
Sbjct: 214 NSNHEMY 220

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} PDB: 3p97_A* 2xbm_A* 3evg_A* Length = 267

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 44  RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGLVLSV 100
           R + KL     +   + P  +V+D G   G WS     L       GY    P       
Sbjct: 62  RGSAKLQWFVER-NMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP 120

Query: 101 DKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT 160
                + I    ++S  D          V  L  +K D +L D+  ++      +     
Sbjct: 121 MSTYGWNIV--KLMSGKD----------VFYLPPEKCDTLLCDIGESSPSPTVEESR--- 165

Query: 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSRSHSAE 218
              I V++    + K    C IK+ +    P + E + R   +    +++ P SR+ + E
Sbjct: 166 --TIRVLKMVEPWLKNNQFC-IKVLNP-YMPTVIEHLERLQRKHGGMLVRNPLSRNSTHE 221

Query: 219 LF 220
           ++
Sbjct: 222 MY 223

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Length = 321

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 27/187 (14%)

Query: 41  YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGLV 97
              R   KL  +  + +FL P  KV+D G   G W              GY     KG  
Sbjct: 75  PVSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYT----KGGP 129

Query: 98  LSVDKLPI--YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
              +   +  Y  +   + S  D          V     +  D +L D+  +++     +
Sbjct: 130 GHEEPQLVQSYGWNIVTMKSGVD----------VFYRPSECCDTLLCDIGESSSSAEVEE 179

Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSR 213
           H  I  L +           P   C +K+      P++ E +     +    +++ P SR
Sbjct: 180 HRTIRVLEMVEDWLHR---GPREFC-VKVLCPY-MPKVIEKMELLQRRYGGGLVRNPLSR 234

Query: 214 SHSAELF 220
           + + E++
Sbjct: 235 NSTHEMY 241

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Length = 265

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 27/179 (15%), Positives = 69/179 (38%), Gaps = 16/179 (8%)

Query: 44  RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL 103
           R   KL  ++ +  ++    +V+D G   G WS  A    +         +   L V   
Sbjct: 58  RGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASRPHVMDV-----RAYTLGVGG- 110

Query: 104 PIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA 163
              P             +  +    +  L  ++ DV++ D+  ++     ++ +   ++ 
Sbjct: 111 HEVPRITESYGWNIVKFKSRVD---IHTLPVERTDVIMCDVGESSPKW-SVESERTIKIL 166

Query: 164 IAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSRSHSAELF 220
             + ++ V    P AD ++K+       ++ E ++    +    +++ P SR+ + E++
Sbjct: 167 ELLEKWKV--KNPSADFVVKVLCPY-SVEVMERLSVMQRKWGGGLVRNPYSRNSTHEMY 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	100.0
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	100.0
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	100.0
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	100.0
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	100.0
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	100.0
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.98
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	99.96
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.95
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.95
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.95
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	99.94
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	99.94
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.94
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.87
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	99.8
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.64
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.63
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.63
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	99.62
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.58
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.57
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.54
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.51
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.47
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.47
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.45
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.45
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.45
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.45
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.44
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.44
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.44
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.44
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.44
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.43
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.43
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.43
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.43
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.43
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.43
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.42
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.42
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.42
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.42
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.42
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.42
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.42
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.41
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.41
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.4
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.4
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.4
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.4
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.4
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.4
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.39
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.39
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.39
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.39
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.38
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.37
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.37
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.37
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.37
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.37
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.37
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.36
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.36
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.36
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.36
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.35
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.35
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.35
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.35
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.34
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.33
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.33
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.33
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.33
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.32
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.32
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.32
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.32
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.32
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.32
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.31
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.31
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.31
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.31
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.31
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.3
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.3
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.3
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.3
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.3
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.3
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.29
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.28
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.28
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.28
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.28
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.28
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.28
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.28
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.28
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.28
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.28
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.27
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.27
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.27
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.27
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.27
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.26
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.26
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.26
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.25
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.25
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.25
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.25
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.25
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.25
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.25
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.25
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.25
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.24
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.24
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.24
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.24
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.24
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.24
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.23
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.23
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.23
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.23
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.23
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.23
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.23
3ocj_A	305	Putative exported protein; structural genomics, PS	99.23
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.23
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.22
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.22
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.22
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.22
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.22
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.21
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.21
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.21
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.2
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.2
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.2
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.19
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.19
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.19
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.19
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.19
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.18
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.18
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.18
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.18
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.18
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.17
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.17
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.17
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.17
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.16
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.15
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.14
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.14
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.14
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.14
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.13
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.13
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.13
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.13
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.12
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.12
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.12
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.12
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.12
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.12
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.11
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.11
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.11
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.11
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.11
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.1
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.1
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.1
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.1
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.09
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.09
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.08
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.08
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.08
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.08
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.08
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.08
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.07
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.06
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.06
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.06
2o07_A	304	Spermidine synthase; structural genomics, structur	99.06
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.06
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.05
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.05
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.05
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.05
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.05
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.05
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.04
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.03
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.03
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.03
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.03
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.02
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.01
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.01
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.01
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.0
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.0
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.0
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.99
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.98
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.98
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.96
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.96
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.96
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.95
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.95
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.95
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.95
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.94
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.94
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.92
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.92
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.92
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.9
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.9
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.88
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.87
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.86
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.86
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.8
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.76
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.76
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.69
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.68
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.66
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.65
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.6
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.6
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.58
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.57
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.57
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.52
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.52
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.5
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.47
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.45
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.44
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.41
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.37
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.33
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.32
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	98.32
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.31
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.3
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.28
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.25
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.22
3lkd_A	542	Type I restriction-modification system methyltrans	98.15
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.14
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.14
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.13
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.12
4gua_A	670	Non-structural polyprotein; viral precursor polypr	98.05
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.03
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.0
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.99
3khk_A	544	Type I restriction-modification system methylation	97.93
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.89
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.84
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.81
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.79
3ufb_A	530	Type I restriction-modification system methyltran	97.79
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.75
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.67
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.66
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.8
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.79
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.71
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.7
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.67
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.6
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.55
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.52
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.52
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.46
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.45
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.44
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.36
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.35
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.34
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.26
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.22
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.22
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.21
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.2
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.18
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.18
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.16
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.14
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.12
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.12
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.09
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.07
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.04
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.99
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.97
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.95
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.9
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.85
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.84
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.84
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.82
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.76
3iyl_W	1299	VP1; non-enveloped virus, membrane penetration pro	95.75
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.69
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.54
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.33
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.33
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	95.28
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.16
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.14
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.08
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.04
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	94.98
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.97
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.85
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.82
2oo3_A	283	Protein involved in catabolism of external DNA; st	94.64
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.64
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.59
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.59
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.57
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.49
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.43
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.4
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.31
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.27
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.23
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.21
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.12
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.1
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.0
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	93.83
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.61
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.53
1ej6_A	1289	Lambda2; icosahedral, non-equivalence, dsRNA virus	93.41
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.4
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.26
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.23
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.16
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.13
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.08
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.07
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.71
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.67
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.64
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	92.54
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.4
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	92.33
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	92.15
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.06
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	92.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.98
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	91.93
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	91.9
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	91.82
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.79
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.7
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	91.63
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.62
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	91.62
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	91.56
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	91.5
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	91.41
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	91.4
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	91.4
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	91.33
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	91.31
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.28
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.18
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	91.0
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.95
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	90.87
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	90.8
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	90.71
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	90.63
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	90.6
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.43
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	90.34
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	89.93
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	89.63
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.6
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	89.41
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	89.4
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.02
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	88.98
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	88.93
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	88.84
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.81
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	88.76
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	88.71
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.67
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	88.56
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	88.56
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	88.16
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	88.12
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.12
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	87.94
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	87.85
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	87.8
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	87.75
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.73
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	87.63
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	87.55
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	87.46
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	87.27
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	86.88
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	86.86
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	86.86
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	86.81
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	86.72
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	86.61
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	86.56
3c85_A	183	Putative glutathione-regulated potassium-efflux S	86.55
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	86.46
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	86.36
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	86.35
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	86.29
3me5_A	482	Cytosine-specific methyltransferase; structural ge	86.29
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	86.26
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	86.25
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.12
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	86.04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	86.02
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	86.02
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	85.92
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	85.87
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	85.73
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	85.7
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	85.59
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	85.57
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	85.49
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	85.41
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	85.27
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	85.24
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	85.0
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	84.97
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	84.95
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	84.92
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.83
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	84.78
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	84.71
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	84.7
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	84.61
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	84.51
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	84.49
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	84.32
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	84.31
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	84.24
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	84.19
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	84.18
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	83.8
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	83.62
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	83.24
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	83.2
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	83.09
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	82.87
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	82.8
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.76
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	82.63

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=100.00  E-value=1e-41  Score=272.95  Aligned_cols=179  Identities=31%  Similarity=0.522  Sum_probs=157.5

Q ss_pred             hcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecC
Q psy1489          38 KENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC  117 (229)
Q Consensus        38 ~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~  117 (229)
                      .++|++|++|||.++++++.+++++.+|||||||||+|+++++++ +          ++|+|+|++++.+++++.++ ++
T Consensus         2 ~~~yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~----------~~V~gvD~~~~~~~~~v~~~-~~   69 (191)
T 3dou_A            2 SLQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-A----------RKIISIDLQEMEEIAGVRFI-RC   69 (191)
T ss_dssp             --CTTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-C----------SEEEEEESSCCCCCTTCEEE-EC
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-C----------CcEEEEeccccccCCCeEEE-Ec
Confidence            468999999999999999999999999999999999999999876 3          69999999998888899999 99


Q ss_pred             CCCChhHHHHHHHHhC---CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         118 DFTQPDIQDRLVTILK---DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       118 D~~~~~~~~~i~~~~~---~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                      |+++......+...+.   .++||+|+||++|+.+|.+..++...+.++..++..+.++|||||+|++++|.+.....+.
T Consensus        70 D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~  149 (191)
T 3dou_A           70 DIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFI  149 (191)
T ss_dssp             CTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHH
T ss_pred             cccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHH
Confidence            9999877666665554   1389999999999999998888888888999999999999999999999999999888999


Q ss_pred             HHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489         195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG  228 (229)
Q Consensus       195 ~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~  228 (229)
                      ..++.+|..|+++||.+||++|+|+|+||+|||+
T Consensus       150 ~~l~~~F~~v~~~kP~asR~~s~E~y~v~~~~~~  183 (191)
T 3dou_A          150 AIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKA  183 (191)
T ss_dssp             HHHGGGEEEEEEECC------CCEEEEEEEEECC
T ss_pred             HHHHHhcCEEEEECCCCccCCCceEEEEEeeecc
Confidence            9999999999999999999999999999999995

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=100.00  E-value=2.4e-37  Score=252.65  Aligned_cols=162  Identities=20%  Similarity=0.275  Sum_probs=136.9

Q ss_pred             cCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHH--HhccCCCCCCC-CcEEEEEe--CCCCCCC-CCC-
Q psy1489          39 ENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL--VNSHGYDSKQP-KGLVLSVD--KLPIYPI-DGA-  111 (229)
Q Consensus        39 ~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~--~~~~~~~~~~~-~~~v~gvD--~~~~~~~-~~~-  111 (229)
                      .+|++|++|||.||++++ ++++|++||||||+||+|+++++++  ++        . .|.++|+|  +.||.++ +++ 
T Consensus        52 g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg--------~V~G~vig~D~~~~P~~~~~~Gv~  122 (269)
T 2px2_A           52 GHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQ--------EVRGYTKGGPGHEEPMLMQSYGWN  122 (269)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEE--------EEEEECCCSTTSCCCCCCCSTTGG
T ss_pred             CCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCC--------CceeEEEccccccCCCcccCCCce
Confidence            379999999999999998 9999999999999999999999987  43        2 36788999  5555554 566 


Q ss_pred             --eEEecC-CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC-EEEEeecCC
Q psy1489         112 --VVLSKC-DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA-DCLIKIWDG  187 (229)
Q Consensus       112 --~~~~~~-D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG-~~v~~~~~~  187 (229)
                        .++ ++ |+++          +++.++|+|+|||+|+ +|.+..|+...+.    +|..|.++|+||| .|++|+|++
T Consensus       123 ~i~~~-~G~Df~~----------~~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          123 IVTMK-SGVDVFY----------KPSEISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             GEEEE-CSCCGGG----------SCCCCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHHHHTTCCSEEEEEESCT
T ss_pred             EEEee-ccCCccC----------CCCCCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHHHhhcCCcEEEEEECCC
Confidence              444 47 9886          4466899999999998 9999999887766    8899999999999 999999996


Q ss_pred             --CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         188 --RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       188 --~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                        +++.++++.++..|..|.+ ||++||++|+|+|+||+..
T Consensus       187 ~~~~~~~~l~~lk~~F~~vkv-k~paSR~~S~E~YlVa~~~  226 (269)
T 2px2_A          187 YMPKVIEKLESLQRRFGGGLV-RVPLSRNSNHEMYWVSGAS  226 (269)
T ss_dssp             TSHHHHHHHHHHHHHHCCEEE-CCTTSCTTCCCEEEETTCC
T ss_pred             CchHHHHHHHHHHHHcCCEEE-ECCCCCCCCccEEEEeccc
Confidence              4456667799999999996 5669999999999999754

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=100.00  E-value=2.5e-35  Score=244.50  Aligned_cols=163  Identities=17%  Similarity=0.145  Sum_probs=137.4

Q ss_pred             cCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---CCCCC------
Q psy1489          39 ENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---IYPID------  109 (229)
Q Consensus        39 ~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---~~~~~------  109 (229)
                      ..|++|++|||++|++++ +++++.+|||||||||+|+++++++.         +...|+|+|+..   +.+++      
T Consensus        69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~---------gv~sV~GvdvG~d~~~~pi~~~~~g~  138 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLK---------NVKKVMAFTLGVQGHEKPIMRTTLGW  138 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTST---------TEEEEEEECCCCTTSCCCCCCCBTTG
T ss_pred             CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhc---------CCCeeeeEEeccCccccccccccCCC
Confidence            468999999999999998 78899999999999999999998765         345789999974   23332      


Q ss_pred             CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC--CEEEEeecC-
Q psy1489         110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG--ADCLIKIWD-  186 (229)
Q Consensus       110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg--G~~v~~~~~-  186 (229)
                      ++..+ ..++..        ..++..++|+|+|||+|+ +|.+..|++..+.+    |..|.++|+||  |.|++|+|+ 
T Consensus       139 ~ii~~-~~~~dv--------~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~L----L~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          139 NLIRF-KDKTDV--------FNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRV----LNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             GGEEE-ECSCCG--------GGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHHHHCCCEEEEEESCC
T ss_pred             ceEEe-eCCcch--------hhcCCCCcCEEEecCccC-CCChHHHHHHHHHH----HHHHHHHcCCCCCCcEEEEEecC
Confidence            22233 322221        125678999999999999 99999999887765    88899999999  999999999 


Q ss_pred             -CCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         187 -GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       187 -~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                       +.+..++++.|+++|..|.++|| +||++|+|+|+||++.
T Consensus       205 yg~~~~~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r  244 (282)
T 3gcz_A          205 YTPLIMEELSRLQLKHGGGLVRVP-LSRNSTHEMYWVSGTR  244 (282)
T ss_dssp             CSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCC
T ss_pred             CCccHHHHHHHHHHhcCCEEEEcC-CCcccCcceeEEEecC
Confidence             88899999999999999999999 9999999999999875

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=100.00  E-value=7.4e-35  Score=241.43  Aligned_cols=162  Identities=16%  Similarity=0.194  Sum_probs=136.5

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC---CCCCCC------C
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL---PIYPID------G  110 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~---~~~~~~------~  110 (229)
                      +|++|++|||++++++ .+++++.+|||||||||+|+++++++.         +...|+|+|+.   ++.+++      +
T Consensus        54 ~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~---------~~~~v~g~dVGvDl~~~pi~~~~~g~~  123 (277)
T 3evf_A           54 VAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQK---------EVSGVKGFTLGRDGHEKPMNVQSLGWN  123 (277)
T ss_dssp             BCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTST---------TEEEEEEECCCCTTCCCCCCCCBTTGG
T ss_pred             CccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhc---------CCCcceeEEEeccCcccccccCcCCCC
Confidence            5999999999999999 678899999999999999999988764         23466677666   233333      3


Q ss_pred             CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEeecC--C
Q psy1489         111 AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKIWD--G  187 (229)
Q Consensus       111 ~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~~~--~  187 (229)
                      +..+ ++++...        .+++.+||+|+||++|+ +|.+..|+...+.+    |..|.++|+|| |.|++|+|+  +
T Consensus       124 ii~~-~~~~dv~--------~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~L----L~~a~~~LkpG~G~FV~KVf~pyg  189 (277)
T 3evf_A          124 IITF-KDKTDIH--------RLEPVKCDTLLCDIGES-SSSSVTEGERTVRV----LDTVEKWLACGVDNFCVKVLAPYM  189 (277)
T ss_dssp             GEEE-ECSCCTT--------TSCCCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHHHHTTCCSEEEEEESCTTS
T ss_pred             eEEE-eccceeh--------hcCCCCccEEEecCccC-cCchHHHHHHHHHH----HHHHHHHhCCCCCeEEEEecCCCC
Confidence            4445 5554321        25678899999999999 99999888877665    88899999999 999999999  8


Q ss_pred             CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       188 ~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      .+..++++.++++|..|.++|| +||++|+|+|+||++.
T Consensus       190 ~~~~~l~~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r  227 (277)
T 3evf_A          190 PDVLEKLELLQRRFGGTVIRNP-LSRNSTHEMYYVSGAR  227 (277)
T ss_dssp             HHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEESSCC
T ss_pred             ccHHHHHHHHHHhcCCEEEEeC-CCCCCCCceEEEEecC
Confidence            8899999999999999999999 9999999999999875

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=100.00  E-value=1.8e-33  Score=225.15  Aligned_cols=181  Identities=31%  Similarity=0.570  Sum_probs=151.3

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCC-CcEEEEEeCCCCCCCCCCeEEecCC
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQP-KGLVLSVDKLPIYPIDGAVVLSKCD  118 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~-~~~v~gvD~~~~~~~~~~~~~~~~D  118 (229)
                      +|++|+++||.++++++.+++++.+|||||||||.++..++++.+        + .++|+|+|++++...+++.++ ++|
T Consensus         1 ~~~~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--------~~~~~v~gvD~s~~~~~~~v~~~-~~d   71 (201)
T 2plw_A            1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTK--------NYKNKIIGIDKKIMDPIPNVYFI-QGE   71 (201)
T ss_dssp             -CCSTTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTT--------TSCEEEEEEESSCCCCCTTCEEE-ECC
T ss_pred             CcchHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcC--------CCCceEEEEeCCccCCCCCceEE-Ecc
Confidence            589999999999999999889999999999999999999999863        2 579999999998777889999 999


Q ss_pred             CCChh-----------------HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         119 FTQPD-----------------IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       119 ~~~~~-----------------~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                      +.+..                 ....+...+++.+||+|++++++...|.+..++....++...++..+.++|+|||.|+
T Consensus        72 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv  151 (201)
T 2plw_A           72 IGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYI  151 (201)
T ss_dssp             TTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence            98754                 3333444466779999999998776666666666666677789999999999999999


Q ss_pred             EeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489         182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~  229 (229)
                      ++++......++...++..|..+.+++|.++|..++|.|+||++|+|.
T Consensus       152 ~~~~~~~~~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~~~~~  199 (201)
T 2plw_A          152 VKMYLGSQTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNFLGR  199 (201)
T ss_dssp             EEEECSTTHHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEEECCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHheEEEECCcccCCcCceEEEEEecCccC
Confidence            999988888889999999999999999999999999999999999974

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=100.00  E-value=1.7e-33  Score=234.79  Aligned_cols=161  Identities=17%  Similarity=0.190  Sum_probs=137.1

Q ss_pred             cCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---CCCC------
Q psy1489          39 ENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---YPID------  109 (229)
Q Consensus        39 ~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---~~~~------  109 (229)
                      .+|++|++|||.+++++ .+++++.+||||||+||+|+++++++.         +...|+|+|+...   .+..      
T Consensus        60 g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~---------gv~sV~Gvdlg~~~~~~P~~~~~~~~  129 (300)
T 3eld_A           60 GISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQK---------EVMSVKGYTLGIEGHEKPIHMQTLGW  129 (300)
T ss_dssp             CCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTST---------TEEEEEEECCCCTTSCCCCCCCBTTG
T ss_pred             CCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhc---------CCceeeeEEeccccccccccccccCC
Confidence            37999999999999999 999999999999999999999999865         3457899999741   2221      


Q ss_pred             CCeEEecC--CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEeecC
Q psy1489         110 GAVVLSKC--DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKIWD  186 (229)
Q Consensus       110 ~~~~~~~~--D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~~~  186 (229)
                      ++... ..  |+..          +.+..+|+|+||++|+ +|.+..|++..+.+    |..|.++|+|| |.|++|+|+
T Consensus       130 ~iv~~-~~~~di~~----------l~~~~~DlVlsD~APn-sG~~~~D~~rs~~L----L~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          130 NIVKF-KDKSNVFT----------MPTEPSDTLLCDIGES-SSNPLVERDRTMKV----LENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             GGEEE-ECSCCTTT----------SCCCCCSEEEECCCCC-CSSHHHHHHHHHHH----HHHHHHHCCTTCCEEEEEESS
T ss_pred             ceEEe-ecCceeee----------cCCCCcCEEeecCcCC-CCCHHHHHHHHHHH----HHHHHHHhcCCCCcEEEEecc
Confidence            12222 22  3222          4567899999999999 99999999877766    88899999999 999999999


Q ss_pred             --CCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         187 --GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       187 --~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                        +++..++++.|+++|..|.++|| +||++|+|+|+||.++
T Consensus       194 ~yG~~~~~ll~~lk~~F~~V~~~KP-aSR~~S~E~Y~V~~~r  234 (300)
T 3eld_A          194 PYHPDVIEKLERLQLRFGGGIVRVP-FSRNSTHEMYYISGAR  234 (300)
T ss_dssp             TTSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEESSCC
T ss_pred             ccCccHHHHHHHHHHhCCcEEEEeC-CCCCCChHHeeeccCC
Confidence              88899999999999999999999 9999999999999885

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.98  E-value=1.5e-31  Score=212.96  Aligned_cols=190  Identities=45%  Similarity=0.854  Sum_probs=149.2

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCC
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF  119 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~  119 (229)
                      +|++|+++++.+++.++.+++++.+|||+|||||.++..++++.+..+.....+.++|+|+|++++..++++.++..+|+
T Consensus         1 ~~~~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~   80 (196)
T 2nyu_A            1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADV   80 (196)
T ss_dssp             CCSSTHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCT
T ss_pred             CchhHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccC
Confidence            58999999999999999989999999999999999999999986410000001127999999999766677766436788


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                      .+......+...+++++||+|+++++++..+.+..++.....+...++.++.++|+|||.|++.++......++.+.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (196)
T 2nyu_A           81 TDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTE  160 (196)
T ss_dssp             TSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHH
Confidence            87665555555566678999999998887777766666666677789999999999999999999988777888898988


Q ss_pred             hCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489         200 FYSQVKILKPPSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       200 ~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~  229 (229)
                      .|..+.+++|.++|..+.|.|+||.||+++
T Consensus       161 ~f~~v~~~~~~~~~~~~~e~~~v~~g~~~~  190 (196)
T 2nyu_A          161 EFQNVRIIKPEASRKESSEVYFLATQYHGR  190 (196)
T ss_dssp             HEEEEEEECCC--------EEEEEEEECCC
T ss_pred             HhcceEEECCcccCccCceEEEEeeecCCc
Confidence            999999999999999999999999999864

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=99.96  E-value=3e-29  Score=201.80  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=133.1

Q ss_pred             cCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----------
Q psy1489          39 ENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----------  108 (229)
Q Consensus        39 ~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----------  108 (229)
                      .+|+||++|||.++++++ +++++++||||||+||+|+++++...+         ..+|+|+|+..+...          
T Consensus        57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g---------~~~V~avdvG~~ghe~P~~~~s~gw  126 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKK---------VTEVRGYTKGGPGHEEPVPMSTYGW  126 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTT---------EEEEEEECCCSTTSCCCCCCCCTTT
T ss_pred             CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcC---------CCEEEEEecCCCCccCcchhhhcCc
Confidence            379999999999999999 678999999999999999999888764         358999999874322          


Q ss_pred             CCCeEEecC-CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         109 DGAVVLSKC-DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       109 ~~~~~~~~~-D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      +.+++. ++ |+..          ++..++|.|+||+.+ .++.+..|+.+.+    .+|+.+.++|++ |.|++|+|++
T Consensus       127 n~v~fk-~gvDv~~----------~~~~~~DtllcDIge-Ss~~~~vE~~Rtl----rvLela~~wL~~-~~fc~KVl~p  189 (267)
T 3p8z_A          127 NIVKLM-SGKDVFY----------LPPEKCDTLLCDIGE-SSPSPTVEESRTI----RVLKMVEPWLKN-NQFCIKVLNP  189 (267)
T ss_dssp             TSEEEE-CSCCGGG----------CCCCCCSEEEECCCC-CCSCHHHHHHHHH----HHHHHHGGGCSS-CEEEEEESCC
T ss_pred             CceEEE-eccceee----------cCCccccEEEEecCC-CCCChhhhhhHHH----HHHHHHHHhccc-CCEEEEEccC
Confidence            467888 76 8643          445789999999998 5666666655443    488999999999 8999999998


Q ss_pred             CC--hHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEec
Q psy1489         188 RN--RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGR  224 (229)
Q Consensus       188 ~~--~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~  224 (229)
                      ..  ..+.++.++..|..+.+++|. ||++++|||+|.-
T Consensus       190 y~p~v~e~l~~lq~~fgg~lVR~P~-SRnsThEMY~Vsg  227 (267)
T 3p8z_A          190 YMPTVIEHLERLQRKHGGMLVRNPL-SRNSTHEMYWISN  227 (267)
T ss_dssp             CSHHHHHHHHHHHHHHCCEEECCTT-SCTTCCCEEEESS
T ss_pred             CChhHHHHHHHHHHHhCCEeEeCCC-CCCCcceEEEEec
Confidence            87  677888899999999999998 9999999999964

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.95  E-value=3.9e-27  Score=183.03  Aligned_cols=179  Identities=35%  Similarity=0.583  Sum_probs=153.7

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCC
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF  119 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~  119 (229)
                      +|++|+.+++.++...+..+.++.+|||+|||+|.++..+++..+        +..+++|+|++++...+++.++ .+|+
T Consensus         1 ~y~~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~~~~~~-~~d~   71 (180)
T 1ej0_A            1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG--------GKGRIIACDLLPMDPIVGVDFL-QGDF   71 (180)
T ss_dssp             CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC--------TTCEEEEEESSCCCCCTTEEEE-ESCT
T ss_pred             CcchhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhC--------CCCeEEEEECccccccCcEEEE-Eccc
Confidence            578999999999999988788899999999999999999998864        4579999999997667888898 9999


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                      .+......+...+++++||+|+++.+....+....++.........++..+.++|+|||.+++..+.......+...++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  151 (180)
T 1ej0_A           72 RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             ccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence            98765555555566789999999988766565555555555556788999999999999999988888888889999999


Q ss_pred             hCCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         200 FYSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       200 ~F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      .|..+.+.+|..+|..+.|.|+||++|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (180)
T 1ej0_A          152 LFTKVKVRKPDSSRARSREVYIVATGRK  179 (180)
T ss_dssp             HEEEEEEECCTTSCTTCCEEEEEEEEEC
T ss_pred             hhhhEEeecCCcccccCceEEEEEccCC
Confidence            9999999999999999999999999997

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.95  E-value=1.1e-27  Score=200.60  Aligned_cols=158  Identities=18%  Similarity=0.294  Sum_probs=127.0

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCC----
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPID----  109 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~----  109 (229)
                      .|++|+++||.+++++ .+++++.+|||||||||+|+++++++            ++|+|||+++|      .+.+    
T Consensus        54 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~------------~~V~gvD~s~m~~~a~~~~~~~~~~  120 (265)
T 2oxt_A           54 LSVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR------------PHVMDVRAYTLGVGGHEVPRITESY  120 (265)
T ss_dssp             BCSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS------------TTEEEEEEECCCCSSCCCCCCCCBT
T ss_pred             CccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc------------CcEEEEECchhhhhhhhhhhhhhcc
Confidence            4899999999999888 66789999999999999999998875            38999999997      2333    


Q ss_pred             --CCeEE-ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC--EEEEee
Q psy1489         110 --GAVVL-SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA--DCLIKI  184 (229)
Q Consensus       110 --~~~~~-~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG--~~v~~~  184 (229)
                        ++.++ +++|+++          +++++||+|+||++ +..+.+..++...    ..+|..+.++|+|||  .|++++
T Consensus       121 ~~~v~~~~~~~D~~~----------l~~~~fD~V~sd~~-~~~~~~~~d~~~~----l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          121 GWNIVKFKSRVDIHT----------LPVERTDVIMCDVG-ESSPKWSVESERT----IKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             TGGGEEEECSCCTTT----------SCCCCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEecccCHhH----------CCCCCCcEEEEeCc-ccCCccchhHHHH----HHHHHHHHHHhccCCCeEEEEEe
Confidence              45543 2567766          45678999999987 5555544444322    137888999999999  999999


Q ss_pred             cCCCChH---HHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         185 WDGRNRP---QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       185 ~~~~~~~---~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      |. +...   +++..++..|..+.+.| .+||+.|+|+|+||.++.
T Consensus       186 ~~-~~~~~~~~~l~~l~~~f~~v~~~k-~~sR~~s~E~y~v~~~~~  229 (265)
T 2oxt_A          186 LC-PYSVEVMERLSVMQRKWGGGLVRN-PYSRNSTHEMYFTSRAGG  229 (265)
T ss_dssp             SC-TTSHHHHHHHHHHHHHHCCEEECC-TTSCTTCCCEEEESSCCS
T ss_pred             CC-CCChhHHHHHHHHHHHcCCEEEEE-ecccCCCccEEEEecCCC
Confidence            98 5555   77778888899999999 799999999999998764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.95  E-value=1.2e-27  Score=204.16  Aligned_cols=160  Identities=18%  Similarity=0.227  Sum_probs=129.8

Q ss_pred             cCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeC----CC--CCC-----
Q psy1489          39 ENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDK----LP--IYP-----  107 (229)
Q Consensus        39 ~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~----~~--~~~-----  107 (229)
                      .++++|+++||.+++++ .++++|.+|||||||||+|+++++++            ++|+|||+    ++  |..     
T Consensus        61 ~~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~------------~~V~gvD~~~~~~~~~~~~~~~~~  127 (305)
T 2p41_A           61 HHAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL------------KNVREVKGLTKGGPGHEEPIPMST  127 (305)
T ss_dssp             SCCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS------------TTEEEEEEECCCSTTSCCCCCCCS
T ss_pred             CCccccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc------------CCEEEEeccccCchhHHHHHHhhh
Confidence            36799999999999888 77888999999999999999998875            37999999    33  221     


Q ss_pred             C--CCCeEEecC-CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         108 I--DGAVVLSKC-DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       108 ~--~~~~~~~~~-D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .  +++.++ ++ |+.+          ++..+||+|+||+++. .+.+..++...    ..+|..+.++|||||.|++++
T Consensus       128 ~~~~~v~~~-~~~D~~~----------l~~~~fD~V~sd~~~~-~g~~~~d~~~~----l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          128 YGWNLVRLQ-SGVDVFF----------IPPERCDTLLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             TTGGGEEEE-CSCCTTT----------SCCCCCSEEEECCCCC-CSSHHHHHHHH----HHHHHHHHHHCCTTCEEEEEE
T ss_pred             cCCCCeEEE-ecccccc----------CCcCCCCEEEECCccc-cCcchhhHHHH----HHHHHHHHHHhCCCCEEEEEe
Confidence            1  357777 77 7776          3456899999999875 55544444322    157888999999999999999


Q ss_pred             cCCCC--hHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489         185 WDGRN--RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG  228 (229)
Q Consensus       185 ~~~~~--~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~  228 (229)
                      +....  ..+++..++..|..+.+.|| +||..++|+|+||.+|+.
T Consensus       192 ~~~~~~~~~~~l~~l~~~f~~v~~~kP-~sR~~s~E~y~v~~~~~~  236 (305)
T 2p41_A          192 LNPYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNASGN  236 (305)
T ss_dssp             SCCCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCCCC
T ss_pred             CCCCCchHHHHHHHHHHHcCCEEEecC-CCCCccHHHHHHHhccCC
Confidence            98743  45788888889999999999 999999999999999874

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=99.94  E-value=6.3e-27  Score=194.14  Aligned_cols=158  Identities=19%  Similarity=0.208  Sum_probs=129.8

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---CCC-------C
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---YPI-------D  109 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---~~~-------~  109 (229)
                      .|++|++|||.++++++. ++++.+||||||+||+|+++++...+         ...|+|+|+...   .|.       +
T Consensus        74 ~y~SR~~~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~g---------v~~V~avdvG~~~he~P~~~~ql~w~  143 (321)
T 3lkz_A           74 HPVSRGTAKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKR---------VQEVRGYTKGGPGHEEPQLVQSYGWN  143 (321)
T ss_dssp             CCSSTHHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTT---------EEEEEEECCCSTTSCCCCCCCBTTGG
T ss_pred             CccchHHHHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcC---------CCEEEEEEcCCCCccCcchhhhcCCc
Confidence            599999999999999965 67889999999999999999887753         348999999864   121       2


Q ss_pred             CCeEEecC-CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEeecCC
Q psy1489         110 GAVVLSKC-DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKIWDG  187 (229)
Q Consensus       110 ~~~~~~~~-D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~~~~  187 (229)
                      .+.++ .+ |+..          ++..++|+|+||+. ..++.+..|....+    .+|..+.++|++| |.|++|+|++
T Consensus       144 lV~~~-~~~Dv~~----------l~~~~~D~ivcDig-eSs~~~~ve~~Rtl----~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          144 IVTMK-SGVDVFY----------RPSECCDTLLCDIG-ESSSSAEVEEHRTI----RVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             GEEEE-CSCCTTS----------SCCCCCSEEEECCC-CCCSCHHHHHHHHH----HHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             ceEEE-eccCHhh----------CCCCCCCEEEEECc-cCCCChhhhhhHHH----HHHHHHHHHhccCCCcEEEEEcCC
Confidence            36677 54 7765          44577999999998 56666665655443    4889999999999 9999999998


Q ss_pred             --CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEec
Q psy1489         188 --RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGR  224 (229)
Q Consensus       188 --~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~  224 (229)
                        ++..+.++.|+..|..+.+++|. ||++++|||||.-
T Consensus       208 Y~~~v~e~l~~lq~~fgg~lvr~P~-SRnst~EmY~vsG  245 (321)
T 3lkz_A          208 YMPKVIEKMELLQRRYGGGLVRNPL-SRNSTHEMYWVSR  245 (321)
T ss_dssp             TSHHHHHHHHHHHHHHCCEEECCTT-SCTTCCCEEEETT
T ss_pred             CChHHHHHHHHHHHHhCCEeEeCCC-CCCCcceEEEEec
Confidence              56678889999999999999998 9999999999964

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=99.94  E-value=2.2e-27  Score=196.48  Aligned_cols=147  Identities=21%  Similarity=0.234  Sum_probs=123.4

Q ss_pred             cCCCCeeEeecC------CCCchHHHHHHHHhccCCCCCCCC-cEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGA------APGSWSQVAVKLVNSHGYDSKQPK-GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGc------GpG~~s~~la~~~~~~~~~~~~~~-~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .+.|++|||||+      .||.+  ++.+. +        |. +.|+++|+.++....++ ++ ++|+...         
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~-~--------p~g~~VVavDL~~~~sda~~-~I-qGD~~~~---------  164 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQW-L--------PTGTLLVDSDLNDFVSDADS-TL-IGDCATV---------  164 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHH-S--------CTTCEEEEEESSCCBCSSSE-EE-ESCGGGE---------
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHh-C--------CCCcEEEEeeCcccccCCCe-EE-Ecccccc---------
Confidence            356899999995      99984  44444 4        55 59999999998766664 47 8996552         


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCC
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPS  211 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~  211 (229)
                      ..+.+||+|+|||+|+.+|+.+.++.+.+.+++.++..|.++|+|||.|++|+|++... +++..+++.|..|+++| ++
T Consensus       165 ~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~-~~L~~lrk~F~~VK~fK-~A  242 (344)
T 3r24_A          165 HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN-ADLYKLMGHFSWWTAFV-TN  242 (344)
T ss_dssp             EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC-HHHHHHHTTEEEEEEEE-EG
T ss_pred             ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH-HHHHHHHhhCCeEEEEC-CC
Confidence            23578999999999999999888776777899999999999999999999999999984 55655667999999997 69


Q ss_pred             CCCCCceEEEEeccCCCC
Q psy1489         212 SRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       212 sr~~s~E~Y~v~~~~~~~  229 (229)
                      ||.+|+|+|+||+||||.
T Consensus       243 SRa~SsEvYLVG~gfKg~  260 (344)
T 3r24_A          243 VNASSSEAFLIGANYLGK  260 (344)
T ss_dssp             GGTTSSCEEEEEEEECSS
T ss_pred             CCCCCeeEEEEeeeccCC
Confidence            999999999999999974

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.94  E-value=1.6e-26  Score=194.52  Aligned_cols=157  Identities=20%  Similarity=0.229  Sum_probs=121.6

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCC----
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPID----  109 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~----  109 (229)
                      .|++|+++||.++.++ ..+++|.+|||||||||+|+.+++++            ++|+|||+++|      .+..    
T Consensus        62 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~------------~~V~gVD~s~m~~~a~~~~~~~~~~  128 (276)
T 2wa2_A           62 HAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ------------PNVREVKAYTLGTSGHEKPRLVETF  128 (276)
T ss_dssp             ---CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS------------TTEEEEEEECCCCTTSCCCCCCCCT
T ss_pred             CcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc------------CCEEEEECchhhhhhhhchhhhhhc
Confidence            4899999999999888 66788999999999999999998875            38999999997      2222    


Q ss_pred             --CCeEE-ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC--EEEEee
Q psy1489         110 --GAVVL-SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA--DCLIKI  184 (229)
Q Consensus       110 --~~~~~-~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG--~~v~~~  184 (229)
                        ++.++ +++|+.+          +++++||+|+||++ ...+.+..++...    ..+|.++.++|+|||  .|++++
T Consensus       129 ~~~v~~~~~~~D~~~----------l~~~~fD~Vvsd~~-~~~~~~~~d~~~~----l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          129 GWNLITFKSKVDVTK----------MEPFQADTVLCDIG-ESNPTAAVEASRT----LTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             TGGGEEEECSCCGGG----------CCCCCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CCCeEEEeccCcHhh----------CCCCCcCEEEECCC-cCCCchhhhHHHH----HHHHHHHHHHhccCCCcEEEEEe
Confidence              34443 1455554          45678999999987 5555544443322    237888999999999  999999


Q ss_pred             cCCCChH---HHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         185 WDGRNRP---QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       185 ~~~~~~~---~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      |. +...   +++..++..|..+.+. |.+||+.++|+|+||.++
T Consensus       194 ~~-~~~~~~~~~l~~l~~~f~~v~v~-P~~sR~~s~E~y~v~~~~  236 (276)
T 2wa2_A          194 LN-PYSCDVLEALMKMQARFGGGLIR-VPLSRNSTHEMYFVSGIK  236 (276)
T ss_dssp             SC-CCSHHHHHHHHHHHHHHCCEEEC-CTTSCTTCCCEEEESSCC
T ss_pred             CC-CCchhHHHHHHHHHHHcCCEEEE-cCCCCCcchheEEecccC
Confidence            98 4445   6677788889999998 999999999999999765

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.87  E-value=1e-22  Score=172.06  Aligned_cols=147  Identities=22%  Similarity=0.279  Sum_probs=117.4

Q ss_pred             ccCCCCeeEeecC------CCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeE-EecCCCCChhHHHHHHH
Q psy1489          58 FLRPGLKVLDCGA------APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVV-LSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        58 ~~~~g~~VLDlGc------GpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~-~~~~D~~~~~~~~~i~~  130 (229)
                      .+++|.+||||||      |||.  ..++++.+        +.++|+|+|+++.  ++++++ + ++|+.+..       
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~--------~~~~V~gvDis~~--v~~v~~~i-~gD~~~~~-------  119 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP--------TGTLLVDSDLNDF--VSDADSTL-IGDCATVH-------  119 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSC--------TTCEEEEEESSCC--BCSSSEEE-ESCGGGCC-------
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC--------CCCEEEEEECCCC--CCCCEEEE-ECccccCC-------
Confidence            3578999999999      6677  66677664        4689999999996  678899 9 99987632       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEEEcC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKILKP  209 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~kp  209 (229)
                       + .++||+|+||+.+...|.+..++.....+...+++++.++|||||+|+++++......++.+.++.+ |..+.+.  
T Consensus       120 -~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~--  195 (290)
T 2xyq_A          120 -T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT--  195 (290)
T ss_dssp             -C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE--
T ss_pred             -c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE--
Confidence             1 3679999999987666666555443344566889999999999999999999888888999999988 8877776  


Q ss_pred             CCCCCCCceEEEEeccCCCC
Q psy1489         210 PSSRSHSAELFLLGRGFKGK  229 (229)
Q Consensus       210 ~~sr~~s~E~Y~v~~~~~~~  229 (229)
                       ++|..++|.|+||++|+|+
T Consensus       196 -asr~~s~e~~lv~~~~~~~  214 (290)
T 2xyq_A          196 -NVNASSSEAFLIGANYLGK  214 (290)
T ss_dssp             -GGGTTSSCEEEEEEEECSS
T ss_pred             -EcCCCchheEEecCCccCC
Confidence             7999999999999999863

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=99.80  E-value=1.2e-19  Score=149.00  Aligned_cols=137  Identities=18%  Similarity=0.238  Sum_probs=113.8

Q ss_pred             cCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---------CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          69 GAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---------IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        69 GcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---------~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      .+++|-+...+.+..          ..+|+-||-.-         |.+++++.++.+.|++++..         .+++|+
T Consensus       149 ~~~~~~~~~~~~k~~----------g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~---------~~k~Dv  209 (320)
T 2hwk_A          149 EHPQSDFSSFVSKLK----------GRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGD---------VPKYDI  209 (320)
T ss_dssp             CCCCCCCHHHHHTSS----------CSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTT---------SCCEEE
T ss_pred             ccCCCCHHHHHhhCC----------CcEEEEEecccccCCceeEeeccCCCceeecccccCCccc---------cCcCCE
Confidence            567777877777653          35777776321         24567777776788887542         157999


Q ss_pred             EEeCCCCCCCCCC-c--ccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC--ChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489         140 VLSDMAPNATGMR-E--MDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR--NRPQLEESITRFYSQVKILKPPSSRS  214 (229)
Q Consensus       140 V~sd~~~~~~g~~-~--~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~--~~~~~~~~l~~~F~~v~~~kp~~sr~  214 (229)
                      |+|||+++.+|++ .  .||...+.+   +++.|.++|+|||+|++|+|.+.  ..+.++..+.+.|..|.++||.+||+
T Consensus       210 V~SDMApn~sGh~yqQC~DHarii~L---al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vKP~ASR~  286 (320)
T 2hwk_A          210 IFVNVRTPYKYHHYQQCEDHAIKLSM---LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLE  286 (320)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHH---THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCTTCCS
T ss_pred             EEEcCCCCCCCccccccchHHHHHHH---HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeCCCCccc
Confidence            9999999999998 6  688877776   88999999999999999999998  68899999999999999999999999


Q ss_pred             CCceEEEEeccCCC
Q psy1489         215 HSAELFLLGRGFKG  228 (229)
Q Consensus       215 ~s~E~Y~v~~~~~~  228 (229)
                       |+|+|+|++||+|
T Consensus       287 -StEvf~La~gf~g  299 (320)
T 2hwk_A          287 -ETEVLFVFIGYDR  299 (320)
T ss_dssp             -TTCEEEEEEEECC
T ss_pred             -cceEEEEEEeecC
Confidence             9999999999996

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.64  E-value=1.1e-15  Score=128.97  Aligned_cols=157  Identities=13%  Similarity=0.153  Sum_probs=106.5

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCC-----CCCeE
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPI-----DGAVV  113 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~-----~~~~~  113 (229)
                      .|.+|+++||..+.+.+.+..+|.+|||+|||||.++..++++          +.++|+|||+++ |...     +.+..
T Consensus        64 ~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~----------ga~~V~aVDvs~~mL~~a~r~~~rv~~  133 (291)
T 3hp7_A           64 RYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN----------GAKLVYAVDVGTNQLVWKLRQDDRVRS  133 (291)
T ss_dssp             CSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEECSSSSCSCHHHHTCTTEEE
T ss_pred             ccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHhCcccce
Confidence            5899999999999999987667899999999999999998876          346999999998 4321     33333


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCC--
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGR--  188 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~--  188 (229)
                      ....|+.....     +.++...||+|++|.++.     +         ...+|.++.++|+|||.+++-+   |...  
T Consensus       134 ~~~~ni~~l~~-----~~l~~~~fD~v~~d~sf~-----s---------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~  194 (291)
T 3hp7_A          134 MEQYNFRYAEP-----VDFTEGLPSFASIDVSFI-----S---------LNLILPALAKILVDGGQVVALVKPQFEAGRE  194 (291)
T ss_dssp             ECSCCGGGCCG-----GGCTTCCCSEEEECCSSS-----C---------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGG
T ss_pred             ecccCceecch-----hhCCCCCCCEEEEEeeHh-----h---------HHHHHHHHHHHcCcCCEEEEEECcccccChh
Confidence            31334432111     124445699999988652     1         1467889999999999998852   3211  


Q ss_pred             ----------------ChHHHHHHHHhh-CCeeEE-EcCCCCCCCCceEEEEecc
Q psy1489         189 ----------------NRPQLEESITRF-YSQVKI-LKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       189 ----------------~~~~~~~~l~~~-F~~v~~-~kp~~sr~~s~E~Y~v~~~  225 (229)
                                      ...++...+... |....+ .-|.....+|.|..+-++.
T Consensus       195 ~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~~~  249 (291)
T 3hp7_A          195 QIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEK  249 (291)
T ss_dssp             GCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEEEE
T ss_pred             hcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHhhh
Confidence                            023344455444 543333 3366667789998776643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.63  E-value=8.6e-16  Score=127.45  Aligned_cols=152  Identities=14%  Similarity=0.200  Sum_probs=104.3

Q ss_pred             cC-CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHH
Q psy1489          59 LR-PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~-~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~  125 (229)
                      ++ ++.+|||+|||+|.++..++++.          .++|+|+|+++ +          ..+. ++.++ ++|+.+..  
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~----------~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~-~~D~~~~~--  112 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRT----------KAKIVGVEIQERLADMAKRSVAYNQLEDQIEII-EYDLKKIT--  112 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTC----------CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEE-CSCGGGGG--
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhc----------CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEE-ECcHHHhh--
Confidence            55 78999999999999999998873          24999999996 2          1233 48888 99987732  


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCC---CCCcccH------HHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNAT---GMREMDH------DLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~---g~~~~d~------~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                          ..+++++||+|++|++....   +....+.      .........++..+.++|+|||.|++ ++......++...
T Consensus       113 ----~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~  187 (259)
T 3lpm_A          113 ----DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF-VHRPERLLDIIDI  187 (259)
T ss_dssp             ----GTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE-EECTTTHHHHHHH
T ss_pred             ----hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE-EEcHHHHHHHHHH
Confidence                22446789999998764322   2211111      11112345788999999999999998 5566677888888


Q ss_pred             HHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489         197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKG  228 (229)
Q Consensus       197 l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~  228 (229)
                      ++...-.+...++..+++.....+++....|+
T Consensus       188 l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~  219 (259)
T 3lpm_A          188 MRKYRLEPKRIQFVHPRSDREANTVLVEGIKD  219 (259)
T ss_dssp             HHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred             HHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence            88764445555666777777777777766653

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.63  E-value=1.2e-15  Score=124.94  Aligned_cols=155  Identities=21%  Similarity=0.218  Sum_probs=102.6

Q ss_pred             ccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCC
Q psy1489          41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGA  111 (229)
Q Consensus        41 ~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~  111 (229)
                      ++++.+..++...+.+. +++|.+|||+|||||+++.++++.++        +.|+|+|+|+++ |.        ...++
T Consensus        57 ~~skla~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~--------~~G~V~avD~s~~~l~~l~~~a~~r~nv  127 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIE--------LNGKAYGVEFSPRVVRELLLVAQRRPNI  127 (232)
T ss_dssp             TTCHHHHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHT--------TTSEEEEEECCHHHHHHHHHHHHHCTTE
T ss_pred             HHHHHHHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhC--------CCCEEEEEECcHHHHHHHHHHhhhcCCe
Confidence            46666666665433333 57899999999999999999999987        788999999998 31        13678


Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----  187 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----  187 (229)
                      .++ .+|++.+....    .+ .++||+|++|+++       .+.      ...++..+.++|||||+|++.+...    
T Consensus       128 ~~i-~~Da~~~~~~~----~~-~~~~D~I~~d~a~-------~~~------~~il~~~~~~~LkpGG~lvisik~~~~d~  188 (232)
T 3id6_C          128 FPL-LADARFPQSYK----SV-VENVDVLYVDIAQ-------PDQ------TDIAIYNAKFFLKVNGDMLLVIKARSIDV  188 (232)
T ss_dssp             EEE-ECCTTCGGGTT----TT-CCCEEEEEECCCC-------TTH------HHHHHHHHHHHEEEEEEEEEEEC------
T ss_pred             EEE-Ecccccchhhh----cc-ccceEEEEecCCC-------hhH------HHHHHHHHHHhCCCCeEEEEEEccCCccc
Confidence            888 99988753211    11 4589999999864       111      1223445666999999999865221    


Q ss_pred             -----CChHHHHHHHHhh-CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         188 -----RNRPQLEESITRF-YSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       188 -----~~~~~~~~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                           .......+.|+.. |+-++....  ..-+...+++||+.
T Consensus       189 t~~~~e~~~~~~~~L~~~gf~~~~~~~l--~p~~~~h~~v~~~~  230 (232)
T 3id6_C          189 TKDPKEIYKTEVEKLENSNFETIQIINL--DPYDKDHAIVLSKY  230 (232)
T ss_dssp             -CCSSSSTTHHHHHHHHTTEEEEEEEEC--TTTCSSCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEecc--CCCcCceEEEEEEe
Confidence                 1234555666654 655554432  11234566777764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=99.62  E-value=2.2e-15  Score=130.14  Aligned_cols=88  Identities=27%  Similarity=0.302  Sum_probs=72.9

Q ss_pred             cCccchhhhhhHhhhhhc-------CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----
Q psy1489          39 ENYRCRSAFKLLEIDSKI-------KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----  107 (229)
Q Consensus        39 ~~~~~r~~~kl~~i~~~~-------~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----  107 (229)
                      .+..||+.+||.|+...|       ..+++|++||||||+||+|++.++++.           ++|+|||+.+|.+    
T Consensus       182 ~~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg-----------~~V~aVD~~~l~~~l~~  250 (375)
T 4auk_A          182 ADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRN-----------MWVYSVDNGPMAQSLMD  250 (375)
T ss_dssp             TTSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTT-----------CEEEEECSSCCCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCC-----------CEEEEEEhhhcChhhcc
Confidence            357899999999987666       346789999999999999999998763           6999999998764    


Q ss_pred             CCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489         108 IDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       108 ~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      .+++.++ ++|.....        .+...||+|+|||.+
T Consensus       251 ~~~V~~~-~~d~~~~~--------~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          251 TGQVTWL-REDGFKFR--------PTRSNISWMVCDMVE  280 (375)
T ss_dssp             TTCEEEE-CSCTTTCC--------CCSSCEEEEEECCSS
T ss_pred             CCCeEEE-eCcccccc--------CCCCCcCEEEEcCCC
Confidence            5789999 99977632        335689999999976

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=5.4e-15  Score=122.94  Aligned_cols=155  Identities=16%  Similarity=0.099  Sum_probs=100.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------------CCCC-CCeEEecCCCCChh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------------YPID-GAVVLSKCDFTQPD  123 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------------~~~~-~~~~~~~~D~~~~~  123 (229)
                      ..++.+|||+|||+|.++..++++.         +..+|+|+|+++ +             ..+. ++.++ ++|+.+..
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~---------~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~-~~D~~~~~  103 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARL---------EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL-EADVTLRA  103 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHC---------TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEE-ECCTTCCH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEE-eCCHHHHh
Confidence            4578899999999999999999885         557999999996 1             1122 37888 99998742


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCC-CCCcccHHHHH------HHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNAT-GMREMDHDLIT------QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~-g~~~~d~~~~~------~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                      . ......+++++||+|++|++.... +....+.....      .....++..+.++|+|||.|++. +......++.+.
T Consensus       104 ~-~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~  181 (260)
T 2ozv_A          104 K-ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI-SRPQSVAEIIAA  181 (260)
T ss_dssp             H-HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE-ECGGGHHHHHHH
T ss_pred             h-hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE-EcHHHHHHHHHH
Confidence            1 111122456789999999764322 11111111111      11457889999999999999984 455567778888


Q ss_pred             HHhhCCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         197 ITRFYSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       197 l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                      ++..|..+.+.............++|.-.
T Consensus       182 l~~~~~~~~i~~v~~~~~~~~~~~lv~~~  210 (260)
T 2ozv_A          182 CGSRFGGLEITLIHPRPGEDAVRMLVTAI  210 (260)
T ss_dssp             HTTTEEEEEEEEEESSTTSCCCEEEEEEE
T ss_pred             HHhcCCceEEEEEcCCCCCCceEEEEEEE
Confidence            87777766666543333445556666543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.58  E-value=5.9e-15  Score=120.72  Aligned_cols=99  Identities=21%  Similarity=0.306  Sum_probs=79.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++||++|||+|||+|.++.++|+.+|        +.|+|+|+|+++ |        ....++..+ .+|..++...    
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG--------~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V-~~d~~~p~~~----  141 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIG--------PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPI-LGDARFPEKY----  141 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--------TTCEEEEEECCHHHHHHHHHHSTTCTTEEEE-ESCTTCGGGG----
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHHhhHhhcCeeEE-EEeccCcccc----
Confidence            68999999999999999999999998        889999999997 2        234678888 8888875421    


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ......+|+|++|.+.     +  +      ....++.++.++|||||.+++.+
T Consensus       142 -~~~~~~vDvVf~d~~~-----~--~------~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          142 -RHLVEGVDGLYADVAQ-----P--E------QAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             -TTTCCCEEEEEECCCC-----T--T------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccccceEEEEEEeccC-----C--h------hHHHHHHHHHHhccCCCEEEEEE
Confidence             1345689999998753     1  1      23467889999999999999865

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.57  E-value=5e-15  Score=123.37  Aligned_cols=102  Identities=14%  Similarity=0.223  Sum_probs=76.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      +++|.+|||||||+|.++..++++.+.       +..+|+|||+|+ |.           ...+++++ ++|+.+     
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~-------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~-~~D~~~-----  134 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVI-EGDIRD-----  134 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCS-------SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE-ESCTTT-----
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCC-------CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEe-eccccc-----
Confidence            678999999999999999999987531       346999999997 31           12367888 999887     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                           ++.+.||+|++....     +....    .....+|+++.++|||||.|++.....
T Consensus       135 -----~~~~~~d~v~~~~~l-----~~~~~----~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          135 -----IAIENASMVVLNFTL-----QFLEP----SERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             -----CCCCSEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -----ccccccccceeeeee-----eecCc----hhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence                 445679999996643     11111    223467899999999999999865433

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.54  E-value=9.8e-15  Score=114.52  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=88.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..++++ +          ++|+|+|+++ |.          .+++++++ ..|..+.     
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~-~----------~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~-~~~~~~l-----   82 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL-S----------KKVYAFDVQEQALGKTSQRLSDLGIENTELI-LDGHENL-----   82 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT-S----------SEEEEEESCHHHHHHHHHHHHHHTCCCEEEE-ESCGGGG-----
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-C----------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-eCcHHHH-----
Confidence            567899999999999999999876 3          6999999997 21          23567888 7665442     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC-----hHHHHHHHHhh--
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN-----RPQLEESITRF--  200 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~-----~~~~~~~l~~~--  200 (229)
                       .. +.+++||+|++++.....+.+  ...........++..+.++|||||.+++..+.+..     ...+.+.+...  
T Consensus        83 -~~-~~~~~fD~v~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~  158 (185)
T 3mti_A           83 -DH-YVREPIRAAIFNLGYLPSADK--SVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQ  158 (185)
T ss_dssp             -GG-TCCSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCT
T ss_pred             -Hh-hccCCcCEEEEeCCCCCCcch--hcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence             11 336789999997532110000  01111233457789999999999999998876431     12333333322  


Q ss_pred             -CCeeEEEcCCCCCCCCceEEEEec
Q psy1489         201 -YSQVKILKPPSSRSHSAELFLLGR  224 (229)
Q Consensus       201 -F~~v~~~kp~~sr~~s~E~Y~v~~  224 (229)
                       ...+....+...+......|+|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~i~~  183 (185)
T 3mti_A          159 RVFTAMLYQPLNQINTPPFLVMLEK  183 (185)
T ss_dssp             TTEEEEEEEESSCSSCCCEEEEEEE
T ss_pred             ceEEEEEehhhccCCCCCeEEEEEe
Confidence             123334445444456666776654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.54  E-value=1.3e-14  Score=120.56  Aligned_cols=97  Identities=18%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ..+.+|||||||+|.++..++++.           .+|+|+|+|+ |    ...+++.++ ++|+.+..        +++
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~-----------~~v~gvD~s~~ml~~a~~~~~v~~~-~~~~e~~~--------~~~   97 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF-----------ERVHAVDPGEAQIRQALRHPRVTYA-VAPAEDTG--------LPP   97 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC-----------SEEEEEESCHHHHHTCCCCTTEEEE-ECCTTCCC--------CCS
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC-----------CEEEEEeCcHHhhhhhhhcCCceee-hhhhhhhc--------ccC
Confidence            456799999999999999988753           5899999997 3    234688898 99988732        668


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      ++||+|++..+.     +..+.       ..++.++.++|||||.|++..+...
T Consensus        98 ~sfD~v~~~~~~-----h~~~~-------~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           98 ASVDVAIAAQAM-----HWFDL-------DRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             SCEEEEEECSCC-----TTCCH-------HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             CcccEEEEeeeh-----hHhhH-------HHHHHHHHHHcCCCCEEEEEECCCC
Confidence            899999996643     33332       3578899999999999988665543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=1.5e-13  Score=110.68  Aligned_cols=138  Identities=19%  Similarity=0.212  Sum_probs=89.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----C----CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----Y----PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~----~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|.+|||+|||||.++..+++..         +.++|+|+|+++ |    .    ...++.++ .+|+.++...    
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~---------~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~-~~d~~~~~~~----  120 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIV---------DEGIIYAVEYSAKPFEKLLELVRERNNIIPL-LFDASKPWKY----  120 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHT---------TTSEEEEECCCHHHHHHHHHHHHHCSSEEEE-CSCTTCGGGT----
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHc---------CCCEEEEEECCHHHHHHHHHHHhcCCCeEEE-EcCCCCchhh----
Confidence            4678999999999999999999886         347999999997 2    1    13467788 8888774210    


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-----CCChHHHH----HHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-----GRNRPQLE----ESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-----~~~~~~~~----~~l~~~  200 (229)
                      ..+ .++||+|+++...       .+      ....++.++.++|||||.|++.+..     .....++.    +.++..
T Consensus       121 ~~~-~~~fD~V~~~~~~-------~~------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (210)
T 1nt2_A          121 SGI-VEKVDLIYQDIAQ-------KN------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD  186 (210)
T ss_dssp             TTT-CCCEEEEEECCCS-------TT------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred             ccc-ccceeEEEEeccC-------hh------HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh
Confidence            012 3689999998532       11      1234578899999999999986411     12234432    225544


Q ss_pred             CCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         201 YSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       201 F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      |..++......  -+.....+|++.|
T Consensus       187 f~~~~~~~~~p--~~~~h~~~~~~~~  210 (210)
T 1nt2_A          187 FKIVKHGSLMP--YHRDHIFIHAYRF  210 (210)
T ss_dssp             SEEEEEEECTT--TCTTEEEEEEEEC
T ss_pred             cEEeeeecCCC--CCCCcEEEEEEcC
Confidence            76555554311  1223456777765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.51  E-value=1.4e-13  Score=109.72  Aligned_cols=149  Identities=13%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCC--C-------CCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPI--D-------GAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~--~-------~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+|+|+++ +...  .       +++++ ++|+.+     .+.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~d~~~-----~~~   93 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC---------PGVSVTAVDLSMDALAVARRNAERFGAVVDWA-AADGIE-----WLI   93 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC---------TTEEEEEEECC-------------------CC-HHHHHH-----HHH
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHhCCceEEE-EcchHh-----hhh
Confidence            678999999999999999999875         557999999998 2211  1       12333 333222     111


Q ss_pred             H-HhCCCCccEEEeCCCCCCCCCCc-ccHHH--------------HHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHH
Q psy1489         130 T-ILKDDKLDVVLSDMAPNATGMRE-MDHDL--------------ITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL  193 (229)
Q Consensus       130 ~-~~~~~~~D~V~sd~~~~~~g~~~-~d~~~--------------~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~  193 (229)
                      . ....++||+|++|.+........ .....              .+.....++..+.++|+|||.+++-.........+
T Consensus        94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  173 (215)
T 4dzr_A           94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEV  173 (215)
T ss_dssp             HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHH
T ss_pred             hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHH
Confidence            1 01237899999987642221100 00000              01112577888999999999944334445556667


Q ss_pred             HHHHH--h-hCCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         194 EESIT--R-FYSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       194 ~~~l~--~-~F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      .+.+.  . -|..+.+.+....+    +.+++++...
T Consensus       174 ~~~l~~~~~gf~~~~~~~~~~~~----~r~~~~~~~~  206 (215)
T 4dzr_A          174 ARLFAPWRERGFRVRKVKDLRGI----DRVIAVTREP  206 (215)
T ss_dssp             HHHTGGGGGGTEECCEEECTTSC----EEEEEEEECC
T ss_pred             HHHHHHhhcCCceEEEEEecCCC----EEEEEEEEcC
Confidence            77666  3 37777777654333    6677766543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.47  E-value=8e-14  Score=111.12  Aligned_cols=117  Identities=16%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..+++..         +.++|+|+|+++ +.          ..+++.++ .+|+.+..    
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~----  103 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLM---------PNGRIFALERNPQYLGFIRDNLKKFVARNVTLV-EAFAPEGL----  103 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHC---------TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEE-ECCTTTTC----
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eCChhhhh----
Confidence            4678999999999999999999874         568999999997 21          23568888 89886521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI  206 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~  206 (229)
                          .....||+|+++....              ....++..+.++|+|||.+++.........++.+.++.. | .+++
T Consensus       104 ----~~~~~~D~i~~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~-~~~~  164 (204)
T 3e05_A          104 ----DDLPDPDRVFIGGSGG--------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY-MVEV  164 (204)
T ss_dssp             ----TTSCCCSEEEESCCTT--------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC-EEEE
T ss_pred             ----hcCCCCCEEEECCCCc--------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC-ceeE
Confidence                1236799999987531              134678889999999999999766555566777777665 5 5444


Q ss_pred             Ec
Q psy1489         207 LK  208 (229)
Q Consensus       207 ~k  208 (229)
                      ..
T Consensus       165 ~~  166 (204)
T 3e05_A          165 AC  166 (204)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.47  E-value=2.6e-13  Score=108.96  Aligned_cols=122  Identities=20%  Similarity=0.302  Sum_probs=90.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..+        +..+|+|+|+++ +          ..++++.++ .+|+.+..    
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~~----  101 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVG--------EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL-KSEENKIP----  101 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHT--------TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEE-ECBTTBCS----
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-ecccccCC----
Confidence            46788999999999999999999875        567999999997 2          123568888 89987632    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC------------ChHHHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR------------NRPQLEE  195 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~------------~~~~~~~  195 (229)
                          +++++||+|++.....     ..+      ....++.++.++|+|||.+++..+...            ...++..
T Consensus       102 ----~~~~~fD~v~~~~~l~-----~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~  166 (219)
T 3dh0_A          102 ----LPDNTVDFIFMAFTFH-----ELS------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGL  166 (219)
T ss_dssp             ----SCSSCEEEEEEESCGG-----GCS------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHH
T ss_pred             ----CCCCCeeEEEeehhhh-----hcC------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHH
Confidence                4567899999976431     111      135678899999999999998765422            3577788


Q ss_pred             HHHhh-CCeeEEEc
Q psy1489         196 SITRF-YSQVKILK  208 (229)
Q Consensus       196 ~l~~~-F~~v~~~k  208 (229)
                      .++.. |..+.+..
T Consensus       167 ~l~~~Gf~~~~~~~  180 (219)
T 3dh0_A          167 ILEDAGIRVGRVVE  180 (219)
T ss_dssp             HHHHTTCEEEEEEE
T ss_pred             HHHHCCCEEEEEEe
Confidence            88776 76666543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.45  E-value=4.6e-13  Score=119.57  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=87.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||||+.+..+++.++        +.++|+|+|+++ +          ..+.++.++ .+|..+      
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~--------~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~-~~Da~~------  167 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMK--------GKGLLVTNEIFPKRAKILSENIERWGVSNAIVT-NHAPAE------  167 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHT--------TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEE-CCCHHH------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-eCCHHH------
Confidence            46799999999999999999999875        557999999997 1          124567777 777544      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccH-----------HHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDH-----------DLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----------~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~~~~  193 (229)
                      +...+ ++.||+|++|+++...|....+.           .....++..+|..+.++|||||.++..+.+   ..+...+
T Consensus       168 l~~~~-~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv  246 (456)
T 3m4x_A          168 LVPHF-SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEII  246 (456)
T ss_dssp             HHHHH-TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             hhhhc-cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHH
Confidence            22222 56899999999866555432221           122345568899999999999999875533   2333334


Q ss_pred             HHHHHhh
Q psy1489         194 EESITRF  200 (229)
Q Consensus       194 ~~~l~~~  200 (229)
                      ...+.++
T Consensus       247 ~~~l~~~  253 (456)
T 3m4x_A          247 SWLVENY  253 (456)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            4555543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.45  E-value=1.1e-13  Score=109.66  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=95.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +.          .+ +++.++ ++|+.+..   
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~---   87 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVG--------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI-KDGHQNMD---   87 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHC--------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEE-CSCGGGGG---
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHh---
Confidence            46789999999999999999999875        567999999997 21          12 467888 89876631   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC-----hHHHHHHHHhhC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN-----RPQLEESITRFY  201 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~-----~~~~~~~l~~~F  201 (229)
                         . ..++.||+|+++.+....+.+...  ........++..+.++|+|||.+++..+.+..     ...+.+.+...-
T Consensus        88 ---~-~~~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~  161 (197)
T 3eey_A           88 ---K-YIDCPVKAVMFNLGYLPSGDHSIS--TRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVD  161 (197)
T ss_dssp             ---G-TCCSCEEEEEEEESBCTTSCTTCB--CCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSC
T ss_pred             ---h-hccCCceEEEEcCCcccCcccccc--cCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCC
Confidence               1 235789999998753111111110  01123346889999999999999988765421     223333333221


Q ss_pred             -C--eeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         202 -S--QVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       202 -~--~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                       .  .+..+.. ..+.+....++|.++.+
T Consensus       162 ~~~~~v~~~~~-~~~~~~pp~~~~~~~~~  189 (197)
T 3eey_A          162 QKKFIVQRTDF-INQANCPPILVCIEKIS  189 (197)
T ss_dssp             TTTEEEEEEEE-TTCCSCCCEEEEEEECC
T ss_pred             CCcEEEEEEEe-ccCccCCCeEEEEEEcc
Confidence             1  2222322 34556666666666554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.45  E-value=2.8e-13  Score=107.63  Aligned_cols=132  Identities=12%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      +.+|||+|||+|.++..+++. +          .+|+|+|+++ |.     ..+++.++ .+|+.+..        ++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~~~~a~~~~~~~~~~-~~d~~~~~--------~~~~  101 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-G----------HQIEGLEPATRLVELARQTHPSVTFH-HGTITDLS--------DSPK  101 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-T----------CCEEEECCCHHHHHHHHHHCTTSEEE-CCCGGGGG--------GSCC
T ss_pred             CCeEEEecCCCCHHHHHHHhc-C----------CeEEEEeCCHHHHHHHHHhCCCCeEE-eCcccccc--------cCCC
Confidence            789999999999999998876 3          4899999997 21     24578898 99887632        5578


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC---------------ChHHHHHHHHhh
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR---------------NRPQLEESITRF  200 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~---------------~~~~~~~~l~~~  200 (229)
                      .||+|++........  .       +....++..+.++|+|||.+++..+...               ...++...++..
T Consensus       102 ~fD~v~~~~~l~~~~--~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  172 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMG--P-------GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETA  172 (203)
T ss_dssp             CEEEEEEESSSTTCC--T-------TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHT
T ss_pred             CeEEEEehhhHhcCC--H-------HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHC
Confidence            999999976542111  0       1235788899999999999998775432               257788888776


Q ss_pred             -CCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         201 -YSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       201 -F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                       |..+.+..-..    ....|++..+.
T Consensus       173 Gf~~~~~~~~~~----~p~~~l~~~~~  195 (203)
T 3h2b_A          173 GFQVTSSHWDPR----FPHAYLTAEAS  195 (203)
T ss_dssp             TEEEEEEEECTT----SSEEEEEEEEC
T ss_pred             CCcEEEEEecCC----Ccchhhhhhhh
Confidence             76665554322    56666665544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.45  E-value=2.5e-13  Score=106.33  Aligned_cols=119  Identities=13%  Similarity=0.161  Sum_probs=91.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCC--CeEEecCCCCChhHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDG--AVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~--~~~~~~~D~~~~~~~  125 (229)
                      ..++.+|||+|||+|.++..+++. +          .+|+|+|+++ +          ..+++  +.++ .+|+.+.   
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~~~~~-~----------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~---  114 (194)
T 1dus_A           50 VDKDDDILDLGCGYGVIGIALADE-V----------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVV-HSDLYEN---  114 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGG-S----------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE-ECSTTTT---
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHc-C----------CeEEEEECCHHHHHHHHHHHHHcCCCccceEEE-ECchhcc---
Confidence            357889999999999999998876 3          6999999996 2          12344  8888 8888763   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeE
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVK  205 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~  205 (229)
                            ++++.||+|+++.+..    +.      ......++..+.++|+|||.+++.........++.+.+++.|..++
T Consensus       115 ------~~~~~~D~v~~~~~~~----~~------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~  178 (194)
T 1dus_A          115 ------VKDRKYNKIITNPPIR----AG------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             ------CTTSCEEEEEECCCST----TC------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCE
T ss_pred             ------cccCCceEEEECCCcc----cc------hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceE
Confidence                  3356899999976431    10      1234578889999999999999988776666668888888888887


Q ss_pred             EEc
Q psy1489         206 ILK  208 (229)
Q Consensus       206 ~~k  208 (229)
                      +.+
T Consensus       179 ~~~  181 (194)
T 1dus_A          179 TVT  181 (194)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.44  E-value=9.3e-13  Score=108.42  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C---CCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P---IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~---~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.     .   .+++.++ .+|+.+..      
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~~------  115 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYG----------AHTHGIDICSNIVNMANERVSGNNKIIFE-ANDILTKE------  115 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHTCCSCTTEEEE-ECCTTTCC------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHHhhcCCCeEEE-ECccccCC------
Confidence            46788999999999999999998754          6999999996 21     1   1578888 99988732      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                        +++++||+|++.....     ...    ......++.++.++|+|||.+++..+
T Consensus       116 --~~~~~fD~v~~~~~l~-----~~~----~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          116 --FPENNFDLIYSRDAIL-----ALS----LENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             --CCTTCEEEEEEESCGG-----GSC----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --CCCCcEEEEeHHHHHH-----hcC----hHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence              4578999999965431     111    13346788999999999999998764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.44  E-value=2.7e-13  Score=115.76  Aligned_cols=124  Identities=16%  Similarity=0.214  Sum_probs=86.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|.+|||+|||||+++..+++.++        +.++|+|+|+++ +.          .+.++.++ .+|+.+..    
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~--------~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~-~~D~~~~~----  182 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMR--------NDGVIYAFDVDENRLRETRLNLSRLGVLNVILF-HSSSLHIG----  182 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTT--------TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEE-SSCGGGGG----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEE-ECChhhcc----
Confidence            46789999999999999999999874        457999999997 21          24567888 88877632    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCccc-----------HHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMD-----------HDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~  193 (229)
                          ..++.||+|++|++....|....+           ......+...++..+.++|||||.+++.+...   .+...+
T Consensus       183 ----~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v  258 (315)
T 1ixk_A          183 ----ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI  258 (315)
T ss_dssp             ----GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             ----cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHH
Confidence                124689999999876544432111           11223455688999999999999999865432   233334


Q ss_pred             HHHHHh
Q psy1489         194 EESITR  199 (229)
Q Consensus       194 ~~~l~~  199 (229)
                      ...++.
T Consensus       259 ~~~l~~  264 (315)
T 1ixk_A          259 QWALDN  264 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            455554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.44  E-value=1.5e-12  Score=108.75  Aligned_cols=142  Identities=17%  Similarity=0.210  Sum_probs=97.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.          .++++.++ ++|+.+.      
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~---------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~-~~d~~~~------  171 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASER---------PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHIL-QSDWFSA------  171 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC---------TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE-CCSTTGG------
T ss_pred             cCCCEEEEecCCccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE-Ecchhhh------
Confidence            467899999999999999999875         567999999996 21          23468888 9998763      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCC---------cc-----cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMR---------EM-----DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~---------~~-----d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                         +++++||+|+++++....+..         ..     .....+.....++..+.++|+|||.+++.+ ......++.
T Consensus       172 ---~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~  247 (276)
T 2b3t_A          172 ---LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQQGEAVR  247 (276)
T ss_dssp             ---GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSSCHHHHH
T ss_pred             ---cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-CchHHHHHH
Confidence               335689999998754221110         00     001112345678899999999999999864 333456677


Q ss_pred             HHHHhh-CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         195 ESITRF-YSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       195 ~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                      +.++.. |..+.+.+..    ...+.+++++.
T Consensus       248 ~~l~~~Gf~~v~~~~d~----~g~~r~~~~~~  275 (276)
T 2b3t_A          248 QAFILAGYHDVETCRDY----GDNERVTLGRY  275 (276)
T ss_dssp             HHHHHTTCTTCCEEECT----TSSEEEEEEEC
T ss_pred             HHHHHCCCcEEEEEecC----CCCCcEEEEEE
Confidence            777665 8778777653    33455666654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.44  E-value=2.2e-13  Score=109.57  Aligned_cols=130  Identities=9%  Similarity=0.042  Sum_probs=87.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++..         |..+|+|+|+++ +          ..+.++.++ ++|+.+.      
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~-~~d~~~~------  103 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN---------PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLL-WVDGSDL------  103 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEE-ECCSSCG------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC---------CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEE-eCCHHHH------
Confidence            457899999999999999999875         567999999996 2          124678899 9998872      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKIL  207 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~  207 (229)
                      ...++++.||+|+++.+....  . ..+....-....++..+.++|+|||.+++..........+.+.+... |..+.+.
T Consensus       104 ~~~~~~~~~D~i~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~  180 (214)
T 1yzh_A          104 TDYFEDGEIDRLYLNFSDPWP--K-KRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW  180 (214)
T ss_dssp             GGTSCTTCCSEEEEESCCCCC--S-GGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HhhcCCCCCCEEEEECCCCcc--c-cchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence            223556789999998642110  0 00100000124678889999999999998764322234555556554 6555554


Q ss_pred             c
Q psy1489         208 K  208 (229)
Q Consensus       208 k  208 (229)
                      +
T Consensus       181 ~  181 (214)
T 1yzh_A          181 L  181 (214)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.44  E-value=1.1e-12  Score=118.07  Aligned_cols=124  Identities=18%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +|.+|||+|||||+.+..+++.++        +.++|+|+|+++ +.          .+.++.++ .+|..+..      
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~--------~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~-~~D~~~~~------  181 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMN--------NEGAILANEFSASRVKVLHANISRCGISNVALT-HFDGRVFG------  181 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTT--------TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE-CCCSTTHH------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-eCCHHHhh------
Confidence            789999999999999999999875        458999999997 21          24578888 89988732      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCc--------c---cHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--C-CChHHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMRE--------M---DHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--G-RNRPQLEE  195 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~--------~---d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~-~~~~~~~~  195 (229)
                      . ..++.||+|++|+++...|...        +   +......++..+|..+.++|||||+++..+.+  . .+...+..
T Consensus       182 ~-~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~  260 (479)
T 2frx_A          182 A-AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLW  260 (479)
T ss_dssp             H-HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHH
T ss_pred             h-hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHH
Confidence            1 1356899999998764433311        1   11223345668899999999999999986543  2 33333444


Q ss_pred             HHHhh
Q psy1489         196 SITRF  200 (229)
Q Consensus       196 ~l~~~  200 (229)
                      .+..+
T Consensus       261 ~l~~~  265 (479)
T 2frx_A          261 LKETY  265 (479)
T ss_dssp             HHHHS
T ss_pred             HHHHC
Confidence            55543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.43  E-value=1.1e-12  Score=105.33  Aligned_cols=168  Identities=15%  Similarity=0.175  Sum_probs=103.9

Q ss_pred             CcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-
Q psy1489          29 ADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-  106 (229)
Q Consensus        29 ~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-  106 (229)
                      ++.|........+..+.......+...+. ..++.+|||+|||+|.++..+++. +          .+|+|+|+++ +. 
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~vD~s~~~~~   88 (227)
T 3e8s_A           21 AQAWIDAVRHGAIESRRQVTDQAILLAIL-GRQPERVLDLGCGEGWLLRALADR-G----------IEAVGVDGDRTLVD   88 (227)
T ss_dssp             HHHHHHHHHHTCCHHHHHTHHHHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT-T----------CEEEEEESCHHHHH
T ss_pred             HHHHHHHhcccccccccccccHHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC-C----------CEEEEEcCCHHHHH
Confidence            45555444443343333222222222332 235689999999999999998876 3          5899999997 21 


Q ss_pred             ---CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         107 ---PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       107 ---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         ...++.+. .+|+.+...    .....+.+||+|++.....   ..+         ...++..+.++|+|||.+++.
T Consensus        89 ~a~~~~~~~~~-~~~~~~~~~----~~~~~~~~fD~v~~~~~l~---~~~---------~~~~l~~~~~~L~pgG~l~~~  151 (227)
T 3e8s_A           89 AARAAGAGEVH-LASYAQLAE----AKVPVGKDYDLICANFALL---HQD---------IIELLSAMRTLLVPGGALVIQ  151 (227)
T ss_dssp             HHHHTCSSCEE-ECCHHHHHT----TCSCCCCCEEEEEEESCCC---SSC---------CHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHhcccccc-hhhHHhhcc----cccccCCCccEEEECchhh---hhh---------HHHHHHHHHHHhCCCeEEEEE
Confidence               12455666 666443100    0012345699999976543   111         236788899999999999987


Q ss_pred             ecCC-------------------------------CChHHHHHHHHhh-CCeeEEEcCCCCCCC-CceEEEEecc
Q psy1489         184 IWDG-------------------------------RNRPQLEESITRF-YSQVKILKPPSSRSH-SAELFLLGRG  225 (229)
Q Consensus       184 ~~~~-------------------------------~~~~~~~~~l~~~-F~~v~~~kp~~sr~~-s~E~Y~v~~~  225 (229)
                      .+..                               ....++...+++. |..+.+..|...... ....++|+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k  226 (227)
T 3e8s_A          152 TLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAER  226 (227)
T ss_dssp             ECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred             ecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence            6421                               1357788888776 877777766544432 3467777764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.43  E-value=1.3e-12  Score=105.71  Aligned_cols=132  Identities=16%  Similarity=0.148  Sum_probs=88.4

Q ss_pred             cCCCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||+||| +|.++..+++..+          .+|+|+|+++ +.          .+ ++.++ .+|+....   
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~----------~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~-~~d~~~~~---  117 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFN----------CKVTATEVDEEFFEYARRNIERNNS-NVRLV-KSNGGIIK---  117 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHC----------CEEEEEECCHHHHHHHHHHHHHTTC-CCEEE-ECSSCSST---
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHHHHHHHHhCC-CcEEE-eCCchhhh---
Confidence            5688999999999 9999999998743          6999999997 21          12 68888 89965421   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHH--------HHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHH
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHD--------LITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESI  197 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~--------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l  197 (229)
                          .++++.||+|++|++....+.......        ........++..+.++|+|||.+++.+... ....++.+.+
T Consensus       118 ----~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l  193 (230)
T 3evz_A          118 ----GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERG  193 (230)
T ss_dssp             ----TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred             ----hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHH
Confidence                144678999999876422211100000        001223678899999999999999865444 3456777777


Q ss_pred             HhhCCeeEEEcC
Q psy1489         198 TRFYSQVKILKP  209 (229)
Q Consensus       198 ~~~F~~v~~~kp  209 (229)
                      ++....++..+.
T Consensus       194 ~~~g~~~~~~~~  205 (230)
T 3evz_A          194 IKLGYSVKDIKF  205 (230)
T ss_dssp             HHTTCEEEEEEE
T ss_pred             HHcCCceEEEEe
Confidence            776445555544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.43  E-value=9.2e-13  Score=117.00  Aligned_cols=125  Identities=23%  Similarity=0.246  Sum_probs=88.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||||+++..+++..         +.++|+|+|+++..           .+ .+.++ .+|+.+..    
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~---------~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~-~~D~~~~~----  308 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVA---------PEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVK-QGDGRYPS----  308 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC---------TTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEE-ECCTTCTH----
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHc---------CCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEE-eCchhhch----
Confidence            3578999999999999999999986         45899999999721           11 36778 89988742    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~  193 (229)
                        ..++++.||+|++|++....|....           +......++..++..+.++|||||.+++.+.+-   .+...+
T Consensus       309 --~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v  386 (429)
T 1sqg_A          309 --QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQI  386 (429)
T ss_dssp             --HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             --hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHH
Confidence              2245678999999987654443111           122233455688999999999999999866432   333445


Q ss_pred             HHHHHhh
Q psy1489         194 EESITRF  200 (229)
Q Consensus       194 ~~~l~~~  200 (229)
                      ...+..+
T Consensus       387 ~~~l~~~  393 (429)
T 1sqg_A          387 KAFLQRT  393 (429)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            5566553

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.43  E-value=2.3e-13  Score=108.44  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=85.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++.          +..+|+|+|+++ +          ....++.++ .+|+.+      
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~------  120 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKL----------GAKSVLATDISDESMTAAEENAALNGIYDIALQ-KTSLLA------  120 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEE-ESSTTT------
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE-eccccc------
Confidence            457899999999999999998764          346999999997 2          123358888 999876      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI  206 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~  206 (229)
                          ..++.||+|+++...              +....++..+.++|+|||.+++..+.......+...++.. |..+.+
T Consensus       121 ----~~~~~fD~i~~~~~~--------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          121 ----DVDGKFDLIVANILA--------------EILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK  182 (205)
T ss_dssp             ----TCCSCEEEEEEESCH--------------HHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred             ----cCCCCceEEEECCcH--------------HHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence                235789999997632              1235778889999999999998766656667777777765 554443


Q ss_pred             E
Q psy1489         207 L  207 (229)
Q Consensus       207 ~  207 (229)
                      .
T Consensus       183 ~  183 (205)
T 3grz_A          183 M  183 (205)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.43  E-value=5.1e-14  Score=117.86  Aligned_cols=135  Identities=12%  Similarity=0.034  Sum_probs=98.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..         +.++|+|+|+++ +          ..+.++.++ .+|+.+..    
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~---------~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~-~~d~~~~~----  182 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYS---------KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPI-LADNRDVE----  182 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT---------CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEE-ESCGGGCC----
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-ECChHHcC----
Confidence            5688999999999999999999875         457999999996 2          134567888 89877620    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-----CChHHHHHHHHhh-C
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-----RNRPQLEESITRF-Y  201 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-----~~~~~~~~~l~~~-F  201 (229)
                          . ++.||+|++|++.   +            ....+..+.+.|+|||.+++..+..     ....+.++.+... .
T Consensus       183 ----~-~~~~D~Vi~d~p~---~------------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~  242 (272)
T 3a27_A          183 ----L-KDVADRVIMGYVH---K------------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNG  242 (272)
T ss_dssp             ----C-TTCEEEEEECCCS---S------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTT
T ss_pred             ----c-cCCceEEEECCcc---c------------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhC
Confidence                1 4579999998753   1            1246677889999999999877654     2234555556554 3


Q ss_pred             CeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         202 SQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       202 ~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      ..+++......|.-+...|.+|..|+
T Consensus       243 ~~~~~~~~~~v~~~~p~~~~~~~d~~  268 (272)
T 3a27_A          243 YKLIDYEVRKIKKYAPGVWHVVVDAK  268 (272)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CeeEEeEEEEEEEECCCCCEEEEEEE
Confidence            56666666667777777888887664

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.43  E-value=3.5e-13  Score=108.63  Aligned_cols=128  Identities=9%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++..         |...|+|+|+++ +          ..++++.++ ++|+.+      +
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~-~~d~~~------l  100 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN---------PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLL-NIDADT------L  100 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEE-CCCGGG------H
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC---------CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEE-eCCHHH------H
Confidence            357899999999999999999875         568999999996 2          134678899 999876      3


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI  206 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~  206 (229)
                      ...++++.||.|+++.+.....  . .+....-....++..+.++|+|||.|++.+........+.+.+... |..+.+
T Consensus       101 ~~~~~~~~~d~v~~~~~~p~~~--~-~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          101 TDVFEPGEVKRVYLNFSDPWPK--K-RHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             HHHCCTTSCCEEEEESCCCCCS--G-GGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HhhcCcCCcCEEEEECCCCCcC--c-cccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccccc
Confidence            3346678899999865321100  0 0000000124678889999999999998764322234445555554 444443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.42  E-value=3.7e-13  Score=110.18  Aligned_cols=157  Identities=14%  Similarity=0.205  Sum_probs=97.8

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCC-----CCCeE
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPI-----DGAVV  113 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~-----~~~~~  113 (229)
                      .|.+|+.+|+..+...+....++.+|||+|||||.++..+++. +         ..+|+|+|+++ |...     +.+..
T Consensus        16 ~yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g---------~~~V~gvDis~~ml~~a~~~~~~~~~   85 (232)
T 3opn_A           16 RYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-G---------AKLVYALDVGTNQLAWKIRSDERVVV   85 (232)
T ss_dssp             CSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T---------CSEEEEECSSCCCCCHHHHTCTTEEE
T ss_pred             CccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-C---------CCEEEEEcCCHHHHHHHHHhCccccc
Confidence            6999999999998888876667889999999999999999876 2         35999999998 4221     22222


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCC--
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGR--  188 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~--  188 (229)
                      ....++....     ...++...||.+.+|.....     .         ..++.++.++|||||.|++.+   |...  
T Consensus        86 ~~~~~~~~~~-----~~~~~~~~~d~~~~D~v~~~-----l---------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~  146 (232)
T 3opn_A           86 MEQFNFRNAV-----LADFEQGRPSFTSIDVSFIS-----L---------DLILPPLYEILEKNGEVAALIKPQFEAGRE  146 (232)
T ss_dssp             ECSCCGGGCC-----GGGCCSCCCSEEEECCSSSC-----G---------GGTHHHHHHHSCTTCEEEEEECHHHHSCHH
T ss_pred             cccceEEEeC-----HhHcCcCCCCEEEEEEEhhh-----H---------HHHHHHHHHhccCCCEEEEEECcccccCHH
Confidence            1012221100     01122223677777664311     1         467889999999999998853   1100  


Q ss_pred             ----------------ChHHHHHHHHhh-CCeeEEE-cCCCCCCCCceEEEEecc
Q psy1489         189 ----------------NRPQLEESITRF-YSQVKIL-KPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       189 ----------------~~~~~~~~l~~~-F~~v~~~-kp~~sr~~s~E~Y~v~~~  225 (229)
                                      ...++...+.+. |..+.+. .|......+.|..+-+++
T Consensus       147 ~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~  201 (232)
T 3opn_A          147 QVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLK  201 (232)
T ss_dssp             HHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred             HhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence                            123444555554 6544443 244455567776665544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.42  E-value=3.7e-13  Score=110.76  Aligned_cols=115  Identities=19%  Similarity=0.335  Sum_probs=87.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCC-CeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDG-AVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~-~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.          .+++ +.++ .+|+.+.    
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~----  157 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVG--------PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIK-LKDIYEG----  157 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEE-CSCGGGC----
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhC--------CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEE-ECchhhc----
Confidence            46789999999999999999999865        678999999996 21          2344 7888 8887652    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh---CCe
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF---YSQ  203 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~---F~~  203 (229)
                           ++++.||+|++|.+.                ...++..+.++|+|||.+++.........++.+.++..   |..
T Consensus       158 -----~~~~~~D~v~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~  216 (255)
T 3mb5_A          158 -----IEEENVDHVILDLPQ----------------PERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMK  216 (255)
T ss_dssp             -----CCCCSEEEEEECSSC----------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSC
T ss_pred             -----cCCCCcCEEEECCCC----------------HHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence                 556789999997642                12467789999999999998665544556677777665   777


Q ss_pred             eEEE
Q psy1489         204 VKIL  207 (229)
Q Consensus       204 v~~~  207 (229)
                      +.++
T Consensus       217 ~~~~  220 (255)
T 3mb5_A          217 PRTI  220 (255)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            7665

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.42  E-value=7.4e-13  Score=110.81  Aligned_cols=135  Identities=14%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||||+++..+++.++        ..++|+|+|+++ +          ..+.++.++ .+|+.+....  
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~--------~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~-~~D~~~~~~~--  149 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMK--------NKGTIVAVEISKTRTKALKSNINRMGVLNTIII-NADMRKYKDY--  149 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTT--------TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ESCHHHHHHH--
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcC--------CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEE-eCChHhcchh--
Confidence            46789999999999999999999864        347999999996 1          123467888 8876542110  


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHH-HHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLE-ESI  197 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~-~~l  197 (229)
                      +.  ..++.||+|++|++....|....+..       ........++..+.++|||||.+++.+...  .+..+.+ +.+
T Consensus       150 ~~--~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l  227 (274)
T 3ajd_A          150 LL--KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYIL  227 (274)
T ss_dssp             HH--HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHH
T ss_pred             hh--hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHH
Confidence            00  12568999999987654443211100       011234578899999999999999865432  2333444 444


Q ss_pred             HhhCCeeEEE
Q psy1489         198 TRFYSQVKIL  207 (229)
Q Consensus       198 ~~~F~~v~~~  207 (229)
                      +. +..+++.
T Consensus       228 ~~-~~~~~~~  236 (274)
T 3ajd_A          228 QK-RNDVELI  236 (274)
T ss_dssp             HH-CSSEEEE
T ss_pred             Hh-CCCcEEe
Confidence            44 3344444

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.42  E-value=8.2e-13  Score=105.81  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++. +          ++|+|+|+++ +          ..++ ++.++ .+|+.+.    
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~----------~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~~----  116 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-G----------GRAITIEPRADRIENIQKNIDTYGLSPRMRAV-QGTAPAA----  116 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ESCTTGG----
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-C----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEE-eCchhhh----
Confidence            467899999999999999999886 4          6999999997 2          1234 68888 9998762    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                          ......||+|+++...        +       .. ++..+.++|+|||.+++.........++.+.++..
T Consensus       117 ----~~~~~~~D~v~~~~~~--------~-------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          117 ----LADLPLPEAVFIGGGG--------S-------QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH  170 (204)
T ss_dssp             ----GTTSCCCSEEEECSCC--------C-------HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             ----cccCCCCCEEEECCcc--------c-------HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence                1123479999997632        1       23 67889999999999999877666667777777776

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.42  E-value=4.1e-13  Score=110.03  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHH---HhccCCCCCCCCcEEEEEeCCC-CCC-----CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKL---VNSHGYDSKQPKGLVLSVDKLP-IYP-----IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~---~~~~~~~~~~~~~~v~gvD~~~-~~~-----~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++.+|||||||+|.++..+++.   ++        +.++|+|||+++ |..     ..+++++ ++|+.+...    ...
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~--------~~~~V~gvD~s~~~l~~a~~~~~~v~~~-~gD~~~~~~----l~~  147 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMG--------IDCQVIGIDRDLSRCQIPASDMENITLH-QGDCSDLTT----FEH  147 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTT--------CCCEEEEEESCCTTCCCCGGGCTTEEEE-ECCSSCSGG----GGG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcC--------CCCEEEEEeCChHHHHHHhccCCceEEE-ECcchhHHH----HHh
Confidence            4689999999999999999987   34        568999999998 322     2468899 999887421    012


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHH-cccCCCEEEEeec----CCCChHHHHHHHHhhCCeeEE
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVT-YSKPGADCLIKIW----DGRNRPQLEESITRFYSQVKI  206 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~-~LkpgG~~v~~~~----~~~~~~~~~~~l~~~F~~v~~  206 (229)
                      +.+.+||+|++|+..      . +       ...++.++.+ +|+|||.|++..+    ...+...+.+.++..=..+.+
T Consensus       148 ~~~~~fD~I~~d~~~------~-~-------~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~  213 (236)
T 2bm8_A          148 LREMAHPLIFIDNAH------A-N-------TFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM  213 (236)
T ss_dssp             GSSSCSSEEEEESSC------S-S-------HHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred             hccCCCCEEEECCch------H-h-------HHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence            334479999998742      1 1       2357788887 9999999998532    122233455555543113444


Q ss_pred             EcCCCCC-CCCceEEEEecc
Q psy1489         207 LKPPSSR-SHSAELFLLGRG  225 (229)
Q Consensus       207 ~kp~~sr-~~s~E~Y~v~~~  225 (229)
                      .+....+ ....+.|+....
T Consensus       214 ~~~~~~~~~~~~~g~~~~~~  233 (236)
T 2bm8_A          214 DMLYANASSQLDRGVLRRVA  233 (236)
T ss_dssp             ETTTTTSCTTTTTCEEEECC
T ss_pred             cchhhcccccccchHhhhcc
Confidence            3322111 233455665544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.42  E-value=5.4e-13  Score=119.29  Aligned_cols=131  Identities=19%  Similarity=0.201  Sum_probs=88.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||||+++..++++++        +.++|+|+|+++ +.          .+. +.++ .+|..+      
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~--------~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~-~~Da~~------  162 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMG--------GKGLLLANEVDGKRVRGLLENVERWGAP-LAVT-QAPPRA------  162 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTT--------TCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEE-CSCHHH------
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEE-ECCHHH------
Confidence            46789999999999999999999875        457999999997 21          234 7777 777554      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCc----------c-cHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMRE----------M-DHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~----------~-d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~~~~  193 (229)
                      +...+ ++.||+|++|+++...|...          . +......++..+|..+.++|||||.|+..+.+   ..+...+
T Consensus       163 l~~~~-~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv  241 (464)
T 3m6w_A          163 LAEAF-GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV  241 (464)
T ss_dssp             HHHHH-CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             hhhhc-cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHH
Confidence            22222 56899999999865444311          1 12233445678999999999999999975533   2333334


Q ss_pred             HHHHHhhCCeeEEE
Q psy1489         194 EESITRFYSQVKIL  207 (229)
Q Consensus       194 ~~~l~~~F~~v~~~  207 (229)
                      ...++. +..+++.
T Consensus       242 ~~~l~~-~~~~~l~  254 (464)
T 3m6w_A          242 AHFLKA-HPEFRLE  254 (464)
T ss_dssp             HHHHHH-CTTEEEE
T ss_pred             HHHHHH-CCCcEEE
Confidence            444544 3334443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.42  E-value=4.9e-13  Score=119.47  Aligned_cols=127  Identities=23%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|.+|||+|||||+++..+++.++        ..++|+|+|+++ +          ..+.++.++ .+|+.+..    
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~--------~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~-~~D~~~~~----  323 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMK--------NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPL-VKDARKAP----  323 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTT--------TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEE-CSCTTCCS----
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcC--------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEE-EcChhhcc----
Confidence            46789999999999999999999874        347999999996 1          134578888 89987631    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCc-----------ccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMRE-----------MDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~-----------~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~  193 (229)
                        ..++++.||+|++|+++...|...           .+......++..++..+.++|||||.+++.+...   .+...+
T Consensus       324 --~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v  401 (450)
T 2yxl_A          324 --EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNI  401 (450)
T ss_dssp             --SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             --hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHH
Confidence              113346899999998865554311           1222333455688999999999999999765443   233444


Q ss_pred             HHHHHhh
Q psy1489         194 EESITRF  200 (229)
Q Consensus       194 ~~~l~~~  200 (229)
                      ...+..+
T Consensus       402 ~~~l~~~  408 (450)
T 2yxl_A          402 RWFLNVH  408 (450)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            5556654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.41  E-value=2.5e-13  Score=110.61  Aligned_cols=116  Identities=28%  Similarity=0.328  Sum_probs=81.7

Q ss_pred             cchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----C----CCCCCe
Q psy1489          42 RCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----Y----PIDGAV  112 (229)
Q Consensus        42 ~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~----~~~~~~  112 (229)
                      +++....+....+.+. ++++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +    .    ..+++.
T Consensus        59 ~~~~~~~~~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g--------~~~~v~gvD~s~~~i~~~~~~a~~~~~v~  129 (233)
T 2ipx_A           59 RSKLAAAILGGVDQIH-IKPGAKVLYLGAASGTTVSHVSDIVG--------PDGLVYAVEFSHRSGRDLINLAKKRTNII  129 (233)
T ss_dssp             TCHHHHHHHTTCSCCC-CCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEECCCHHHHHHHHHHHHHCTTEE
T ss_pred             chhHHHHHHhHHheec-CCCCCEEEEEcccCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHhhccCCeE
Confidence            4444444443223333 46789999999999999999999875        567999999995 1    1    126788


Q ss_pred             EEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         113 VLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       113 ~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      ++ .+|+.+....     ...++.||+|++|++.       .+.      ...++..+.++|+|||.+++.+.
T Consensus       130 ~~-~~d~~~~~~~-----~~~~~~~D~V~~~~~~-------~~~------~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          130 PV-IEDARHPHKY-----RMLIAMVDVIFADVAQ-------PDQ------TRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EE-CSCTTCGGGG-----GGGCCCEEEEEECCCC-------TTH------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EE-EcccCChhhh-----cccCCcEEEEEEcCCC-------ccH------HHHHHHHHHHHcCCCeEEEEEEc
Confidence            88 9999874211     1235689999997641       111      23456779999999999998654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=1.3e-12  Score=102.37  Aligned_cols=139  Identities=16%  Similarity=0.099  Sum_probs=96.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+++ +     ...+++.++ .+|+.+..        +
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~~D~~~~~~~~a~~~~~~~~~~-~~d~~~~~--------~  103 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ-G----------HDVLGTDLDPILIDYAKQDFPEARWV-VGDLSVDQ--------I  103 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHCTTSEEE-ECCTTTSC--------C
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC-C----------CcEEEEcCCHHHHHHHHHhCCCCcEE-EcccccCC--------C
Confidence            467899999999999999998875 3          5899999997 2     124568888 89987632        4


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhh-CCeeEEEcC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRF-YSQVKILKP  209 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~-F~~v~~~kp  209 (229)
                      +++.||+|++++..    .+...    ......++..+.++|+|||.+++.....  ....++...+... |..+.....
T Consensus       104 ~~~~~D~i~~~~~~----~~~~~----~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          104 SETDFDLIVSAGNV----MGFLA----EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             CCCCEEEEEECCCC----GGGSC----HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             CCCceeEEEECCcH----HhhcC----hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence            46789999996321    11111    1224578888999999999999876554  3567788888776 776666655


Q ss_pred             CCCCC---CCceEEEEecc
Q psy1489         210 PSSRS---HSAELFLLGRG  225 (229)
Q Consensus       210 ~~sr~---~s~E~Y~v~~~  225 (229)
                      ...++   .+.-.++|+++
T Consensus       176 ~~~~~~~~~~~~~~~v~~k  194 (195)
T 3cgg_A          176 WDLKPFVQGSEFLVAVFTK  194 (195)
T ss_dssp             TTCCBCCTTCSEEEEEEEE
T ss_pred             cccCcCCCCCcEEEEEEec
Confidence            33332   34445555543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.40  E-value=6.3e-13  Score=103.05  Aligned_cols=108  Identities=15%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..         +..+|+|+|+++ +          ...+ ++ ++ .+|..+.    
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~-~~d~~~~----   87 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRST---------PQTTAVCFEISEERRERILSNAINLGVSDRI-AV-QQGAPRA----   87 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTS---------SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EE-ECCTTGG----
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHC---------CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EE-ecchHhh----
Confidence            4678899999999999999998875         457999999997 2          1233 56 67 7776542    


Q ss_pred             HHHHHhCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489         127 RLVTILKD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY  201 (229)
Q Consensus       127 ~i~~~~~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F  201 (229)
                           ++.  +.||+|+++.....               ..++..+.++|+|||.+++..+.......+...++...
T Consensus        88 -----~~~~~~~~D~i~~~~~~~~---------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  144 (178)
T 3hm2_A           88 -----FDDVPDNPDVIFIGGGLTA---------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFG  144 (178)
T ss_dssp             -----GGGCCSCCSEEEECC-TTC---------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             -----hhccCCCCCEEEECCcccH---------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcC
Confidence                 223  78999999765311               35678899999999999987776655666777776664

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.40  E-value=4.3e-13  Score=117.39  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C-----------C--CCCeEEecCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P-----------I--DGAVVLSKCDF  119 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~-----------~--~~~~~~~~~D~  119 (229)
                      ..++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +.     .           .  +++.++ .+|+
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~-~~d~  151 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVG--------EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFL-KGFI  151 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHT--------TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEE-ESCT
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEE-EccH
Confidence            35789999999999999999999875        567999999996 21     1           1  578899 9999


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC------------
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG------------  187 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~------------  187 (229)
                      .+.....  ...+++++||+|+++......    .+       ...++.++.++|||||.|++..+..            
T Consensus       152 ~~l~~~~--~~~~~~~~fD~V~~~~~l~~~----~d-------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~  218 (383)
T 4fsd_A          152 ENLATAE--PEGVPDSSVDIVISNCVCNLS----TN-------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDP  218 (383)
T ss_dssp             TCGGGCB--SCCCCTTCEEEEEEESCGGGC----SC-------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCH
T ss_pred             HHhhhcc--cCCCCCCCEEEEEEccchhcC----CC-------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhH
Confidence            8731000  002557899999997754211    11       2478899999999999999864321            


Q ss_pred             ----------CChHHHHHHHHhh-CCeeEEEc
Q psy1489         188 ----------RNRPQLEESITRF-YSQVKILK  208 (229)
Q Consensus       188 ----------~~~~~~~~~l~~~-F~~v~~~k  208 (229)
                                ....++...+++. |..+.+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          219 ILYGECLGGALYLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence                      1236677777776 77665544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.40  E-value=2.5e-13  Score=108.64  Aligned_cols=138  Identities=18%  Similarity=0.130  Sum_probs=93.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++ +..    ..++.+. .+|+.+.         -.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~-~~d~~~~---------~~   99 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA-G----------FDVDATDGSPELAAEASRRLGRPVR-TMLFHQL---------DA   99 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHTSCCE-ECCGGGC---------CC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc-C----------CeEEEECCCHHHHHHHHHhcCCceE-EeeeccC---------CC
Confidence            567899999999999999998875 2          5999999997 211    1155666 7776652         14


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--------------CChHHHHHHHHh
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--------------RNRPQLEESITR  199 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--------------~~~~~~~~~l~~  199 (229)
                      ++.||+|++.....     ...    .+....++..+.++|+|||.+++.....              ....++...+++
T Consensus       100 ~~~fD~v~~~~~l~-----~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (211)
T 3e23_A          100 IDAYDAVWAHACLL-----HVP----RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAE  170 (211)
T ss_dssp             CSCEEEEEECSCGG-----GSC----HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHH
T ss_pred             CCcEEEEEecCchh-----hcC----HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHh
Confidence            67899999966431     111    1234578899999999999999876432              246778888877


Q ss_pred             h--CCeeEEEcCCCCCC-CCceEEEEeccC
Q psy1489         200 F--YSQVKILKPPSSRS-HSAELFLLGRGF  226 (229)
Q Consensus       200 ~--F~~v~~~kp~~sr~-~s~E~Y~v~~~~  226 (229)
                      .  |..+.+........ ...+.++.+.+.
T Consensus       171 aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~  200 (211)
T 3e23_A          171 AGTWASVAVESSEGKGFDQELAQFLHVSVR  200 (211)
T ss_dssp             HCCCSEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCCcEEEEEEeccCCCCCCCCceEEEEEEe
Confidence            5  87777665333222 334445544443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.40  E-value=5.5e-13  Score=112.49  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++++|||+|||||+++..++.+.         +.++|+|+|+++ |.          .+.+++++ ++|+.+      
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~---------~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v-~gDa~~------  183 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHV---------YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVI-TGDETV------  183 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHT---------TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEE-ESCGGG------
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHc---------cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEE-ECchhh------
Confidence            6789999999999999886655443         457999999997 21          23578888 998776      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC---hHHHHHHHHhhCCee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN---RPQLEESITRFYSQV  204 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~---~~~~~~~l~~~F~~v  204 (229)
                          ++++.||+|+++...       .+       ...+++++.++|||||+|++....+..   ...+......-|...
T Consensus       184 ----l~d~~FDvV~~~a~~-------~d-------~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~gf~~~  245 (298)
T 3fpf_A          184 ----IDGLEFDVLMVAALA-------EP-------KRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRA  245 (298)
T ss_dssp             ----GGGCCCSEEEECTTC-------SC-------HHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGTTEEEE
T ss_pred             ----CCCCCcCEEEECCCc-------cC-------HHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhhhhhhe
Confidence                336789999986531       11       346889999999999999987643211   001111233358777


Q ss_pred             EEEcCCC
Q psy1489         205 KILKPPS  211 (229)
Q Consensus       205 ~~~kp~~  211 (229)
                      ..+-|..
T Consensus       246 ~~~~p~~  252 (298)
T 3fpf_A          246 GVVLPSG  252 (298)
T ss_dssp             EEECCCT
T ss_pred             eEECCCC
Confidence            7777744

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.40  E-value=3.5e-13  Score=110.03  Aligned_cols=124  Identities=18%  Similarity=0.185  Sum_probs=84.2

Q ss_pred             CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ..++++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.  ....+.++ .+|+.+      ....++
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~~~~a~~~~~~~-~~d~~~------~~~~~~   98 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEE-G----------IESIGVDINEDMIKFCEGKFNVV-KSDAIE------YLKSLP   98 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHH-T----------CCEEEECSCHHHHHHHHTTSEEE-CSCHHH------HHHTSC
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhC-C----------CcEEEEECCHHHHHHHHhhccee-eccHHH------HhhhcC
Confidence            34567899999999999999998876 3          4799999997 21  11237777 777544      222356


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC------------------ChHHHHH
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR------------------NRPQLEE  195 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~------------------~~~~~~~  195 (229)
                      +++||+|++......     ...    .....++.++.++|||||.+++.+....                  ...++..
T Consensus        99 ~~~fD~i~~~~~l~~-----~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  169 (240)
T 3dli_A           99 DKYLDGVMISHFVEH-----LDP----ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKF  169 (240)
T ss_dssp             TTCBSEEEEESCGGG-----SCG----GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHH
T ss_pred             CCCeeEEEECCchhh-----CCc----HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHH
Confidence            789999999654311     110    1235788899999999999998775432                  2345666


Q ss_pred             HHHhh-CCeeEEE
Q psy1489         196 SITRF-YSQVKIL  207 (229)
Q Consensus       196 ~l~~~-F~~v~~~  207 (229)
                      .++.. |..+.+.
T Consensus       170 ~l~~aGf~~~~~~  182 (240)
T 3dli_A          170 ILEYLGFRDVKIE  182 (240)
T ss_dssp             HHHHHTCEEEEEE
T ss_pred             HHHHCCCeEEEEE
Confidence            66665 6555444

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.40  E-value=7.1e-13  Score=110.75  Aligned_cols=116  Identities=19%  Similarity=0.316  Sum_probs=85.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------C-CCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------Y-PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~-~~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++.++        +.++|+|+|+++ +          . ..+++.+. .+|+.+.    
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~-~~d~~~~----  174 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALN--------GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS-RSDIADF----  174 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHT--------TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE-CSCTTTC----
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEE-ECchhcc----
Confidence            46789999999999999999998854        567999999986 1          1 23568888 8988762    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVK  205 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~  205 (229)
                           ++++.||+|+++++.                ...++..+.++|+|||.+++..........+.+.++.. |..+.
T Consensus       175 -----~~~~~fD~Vi~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~  233 (275)
T 1yb2_A          175 -----ISDQMYDAVIADIPD----------------PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE  233 (275)
T ss_dssp             -----CCSCCEEEEEECCSC----------------GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred             -----CcCCCccEEEEcCcC----------------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEE
Confidence                 456789999996531                12567889999999999998765433445566666554 65555


Q ss_pred             EEc
Q psy1489         206 ILK  208 (229)
Q Consensus       206 ~~k  208 (229)
                      +..
T Consensus       234 ~~~  236 (275)
T 1yb2_A          234 TVE  236 (275)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.39  E-value=2.7e-13  Score=112.66  Aligned_cols=147  Identities=17%  Similarity=0.148  Sum_probs=90.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--------CC---------------------
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--------ID---------------------  109 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--------~~---------------------  109 (229)
                      .+|.+|||||||+|.++..++..          ...+|+|+|+|+ |..        .+                     
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~----------~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~  123 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD----------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGR  123 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG----------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGG
T ss_pred             CCCceEEEeCCCccHHHHHHHHh----------hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcc
Confidence            46889999999999888776643          224799999996 211        00                     


Q ss_pred             ----------CCe-EEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHH-HHHHHHHHHHHHHHHcccCC
Q psy1489         110 ----------GAV-VLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHD-LITQLAIAVIRFAVTYSKPG  177 (229)
Q Consensus       110 ----------~~~-~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~-~~~~~~~~~l~~~~~~Lkpg  177 (229)
                                ++. ++ ++|+.+....    ......+||+|++....        .+. ........++.++.++||||
T Consensus       124 ~~~~~~~~~~~i~~~~-~~D~~~~~~~----~~~~~~~fD~V~~~~~l--------~~i~~~~~~~~~~l~~i~r~LKPG  190 (263)
T 2a14_A          124 WEEKEEKLRAAVKRVL-KCDVHLGNPL----APAVLPLADCVLTLLAM--------ECACCSLDAYRAALCNLASLLKPG  190 (263)
T ss_dssp             HHHHHHHHHHHEEEEE-ECCTTSSSTT----TTCCCCCEEEEEEESCH--------HHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhHHHHHHhhhheEE-eccccCCCCC----CccccCCCCEeeehHHH--------HHhcCCHHHHHHHHHHHHHHcCCC
Confidence                      111 56 7777762100    00124689999997643        110 01233457899999999999


Q ss_pred             CEEEEeecCC---------------CChHHHHHHHHhh-CCeeEEEcCCCCC----C-CCceEEEEeccCCCC
Q psy1489         178 ADCLIKIWDG---------------RNRPQLEESITRF-YSQVKILKPPSSR----S-HSAELFLLGRGFKGK  229 (229)
Q Consensus       178 G~~v~~~~~~---------------~~~~~~~~~l~~~-F~~v~~~kp~~sr----~-~s~E~Y~v~~~~~~~  229 (229)
                      |.|++.....               ....++...+... |..+.+..+...-    . ...-.|++|++.+++
T Consensus       191 G~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~  263 (263)
T 2a14_A          191 GHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKPGP  263 (263)
T ss_dssp             EEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC--
T ss_pred             cEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecCCC
Confidence            9999875221               1356778888776 7766665542111    1 124457788876653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.39  E-value=5.8e-13  Score=103.58  Aligned_cols=124  Identities=15%  Similarity=0.069  Sum_probs=84.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-CCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      .++.+|||+|||+|.++..++++          .  +|+|+|+++ | ...+++.++ ++|+.+.         +++++|
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~----------~--~v~gvD~s~~~~~~~~~~~~~-~~d~~~~---------~~~~~f   79 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKR----------N--TVVSTDLNIRALESHRGGNLV-RADLLCS---------INQESV   79 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTT----------S--EEEEEESCHHHHHTCSSSCEE-ECSTTTT---------BCGGGC
T ss_pred             CCCCeEEEeccCccHHHHHHHhc----------C--cEEEEECCHHHHhcccCCeEE-ECChhhh---------cccCCC
Confidence            35779999999999999998764          2  999999998 2 225578888 9998763         345789


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEEEc
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKILK  208 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~k  208 (229)
                      |+|+++++.........  ...-......+..+.+.| |||.+++.........++...++.. |..+.+.+
T Consensus        80 D~i~~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           80 DVVVFNPPYVPDTDDPI--IGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             SEEEECCCCBTTCCCTT--TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEECCCCccCCcccc--ccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe
Confidence            99999876422111100  000000123455666677 9999998776666778888888775 65555554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.39  E-value=1.2e-12  Score=104.12  Aligned_cols=129  Identities=10%  Similarity=0.088  Sum_probs=85.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..++...         +..+|+|+|+++ +          ..++++.++ .+|+.+.       
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~-------  127 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR---------PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPV-QSRVEEF-------  127 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEE-ECCTTTS-------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE-ecchhhC-------
Confidence            47899999999999999999875         567999999997 2          123458888 8998763       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP  209 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp  209 (229)
                        .+.++||+|+++...         +      ...++..+.++|+|||.+++.... ....++.+.+. -|..+.+...
T Consensus       128 --~~~~~~D~i~~~~~~---------~------~~~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~~-g~~~~~~~~~  188 (207)
T 1jsx_A          128 --PSEPPFDGVISRAFA---------S------LNDMVSWCHHLPGEQGRFYALKGQ-MPEDEIALLPE-EYQVESVVKL  188 (207)
T ss_dssp             --CCCSCEEEEECSCSS---------S------HHHHHHHHTTSEEEEEEEEEEESS-CCHHHHHTSCT-TEEEEEEEEE
T ss_pred             --CccCCcCEEEEeccC---------C------HHHHHHHHHHhcCCCcEEEEEeCC-CchHHHHHHhc-CCceeeeeee
Confidence              234689999985421         1      246788899999999999986432 23334433333 3544443222


Q ss_pred             CCCCCCCceEEEEecc
Q psy1489         210 PSSRSHSAELFLLGRG  225 (229)
Q Consensus       210 ~~sr~~s~E~Y~v~~~  225 (229)
                      .....+....++++++
T Consensus       189 ~~~~~~~~~~~~~~~k  204 (207)
T 1jsx_A          189 QVPALDGERHLVVIKA  204 (207)
T ss_dssp             ECC--CCEEEEEEEEE
T ss_pred             ccCCCCCceEEEEEEe
Confidence            2233344555566554

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.39  E-value=1.1e-12  Score=106.38  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=75.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ..++.+|||+|||+|.++..+++..         +..+|+|+|+++ +        ....++.++ .+|+.+..      
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~~------  105 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKY---------PEATFTLVDMSEKMLEIAKNRFRGNLKVKYI-EADYSKYD------  105 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHTCSCTTEEEE-ESCTTTCC------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHhhccCCCEEEE-eCchhccC------
Confidence            4578999999999999999999875         567999999997 2        112368888 99988732      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                        + .+.||+|++....     +..+.    .....+++++.++|+|||.+++..+...
T Consensus       106 --~-~~~fD~v~~~~~l-----~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          106 --F-EEKYDMVVSALSI-----HHLED----EDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             --C-CSCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             --C-CCCceEEEEeCcc-----ccCCH----HHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence              2 3789999997643     11111    1224678999999999999998765543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.39  E-value=6.6e-13  Score=104.62  Aligned_cols=101  Identities=22%  Similarity=0.202  Sum_probs=73.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..++..          +..+|+|+|+++ +.          .+.+++++ ++|+.+.      
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~------  105 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR----------GAASVLFVESDQRSAAVIARNIEALGLSGATLR-RGAVAAV------  105 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT----------TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEE-ESCHHHH------
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC----------CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE-EccHHHH------
Confidence            46889999999999999987764          346899999997 21          23568888 8886552      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHH--cccCCCEEEEeecCC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVT--YSKPGADCLIKIWDG  187 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~--~LkpgG~~v~~~~~~  187 (229)
                      ...+++++||+|++|.+..    +.      ......++..+.+  +|+|||.+++.....
T Consensus       106 ~~~~~~~~fD~i~~~~p~~----~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          106 VAAGTTSPVDLVLADPPYN----VD------SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             HHHCCSSCCSEEEECCCTT----SC------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             HhhccCCCccEEEECCCCC----cc------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            2224467899999987531    10      1234567777888  999999999976543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.38  E-value=1.7e-12  Score=107.25  Aligned_cols=96  Identities=14%  Similarity=0.086  Sum_probs=72.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++++.+|||+|||+|.++..+++..           .+|+|+|+++ +.     ..+++.++ .+|+.+..        +
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~-~~d~~~~~--------~  107 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADSF-----------GTVEGLELSADMLAIARRRNPDAVLH-HGDMRDFS--------L  107 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTTS-----------SEEEEEESCHHHHHHHHHHCTTSEEE-ECCTTTCC--------C
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHcC-----------CeEEEEECCHHHHHHHHhhCCCCEEE-ECChHHCC--------c
Confidence            3567899999999999999988652           4899999997 21     24578899 99988732        2


Q ss_pred             CCCCccEEEeCC-CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDM-APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ++.||+|++.. ..        .+....+....++..+.++|+|||.|++.
T Consensus       108 -~~~fD~v~~~~~~l--------~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          108 -GRRFSAVTCMFSSI--------GHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             -SCCEEEEEECTTGG--------GGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             -cCCcCEEEEcCchh--------hhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             57899999965 22        12212234567889999999999999985

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.37  E-value=3e-13  Score=108.14  Aligned_cols=96  Identities=11%  Similarity=0.019  Sum_probs=69.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C---------------CCCCeEEe
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P---------------IDGAVVLS  115 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~---------------~~~~~~~~  115 (229)
                      +.++.+|||+|||+|..+..++++ +          .+|+|+|+|+ |.       .               ..+++++ 
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~-g----------~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~-   87 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ-G----------YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW-   87 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH-C----------CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE-
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC-C----------CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE-
Confidence            357889999999999999999986 3          5999999997 31       1               2468888 


Q ss_pred             cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ++|+.+.....       .++||+|++.....     ....    .....++.++.++|||||.+++
T Consensus        88 ~~d~~~l~~~~-------~~~fD~v~~~~~l~-----~l~~----~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           88 CGDFFALTARD-------IGHCAAFYDRAAMI-----ALPA----DMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             EECCSSSTHHH-------HHSEEEEEEESCGG-----GSCH----HHHHHHHHHHHHHSCSEEEEEE
T ss_pred             ECccccCCccc-------CCCEEEEEECcchh-----hCCH----HHHHHHHHHHHHHcCCCcEEEE
Confidence            99998853110       15799999865431     1111    2345678999999999998443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.37  E-value=1.9e-12  Score=113.17  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             CCCCeeEeecCC------CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          60 RPGLKVLDCGAA------PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        60 ~~g~~VLDlGcG------pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .++.+|||||||      +|+.+..+++...        |.++|+|+|+++ |. ..++++++ ++|+.+......+...
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f--------P~a~V~GVDiSp~m~~~~~rI~fv-~GDa~dlpf~~~l~~~  285 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFF--------PRGQIYGLDIMDKSHVDELRIRTI-QGDQNDAEFLDRIARR  285 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHC--------TTCEEEEEESSCCGGGCBTTEEEE-ECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhC--------CCCEEEEEECCHHHhhcCCCcEEE-Eecccccchhhhhhcc
Confidence            356899999999      8888888887654        678999999998 32 23578999 9999997654433321


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        +++||+|++|+..      ..      ......|.++.++|||||.|++..
T Consensus       286 --d~sFDlVisdgsH------~~------~d~~~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          286 --YGPFDIVIDDGSH------IN------AHVRTSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             --HCCEEEEEECSCC------CH------HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             --cCCccEEEECCcc------cc------hhHHHHHHHHHHhcCCCeEEEEEe
Confidence              4689999998642      11      224578999999999999999864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.37  E-value=9e-13  Score=108.23  Aligned_cols=94  Identities=17%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++.+|||+|||+|.++..+++..          ..+|+|+|+++ +       ....++.++ .+|+.+..        +
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~d~~~~~--------~  104 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG----------AKKVLGIDLSERMLTEAKRKTTSPVVCYE-QKAIEDIA--------I  104 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT----------CSEEEEEESCHHHHHHHHHHCCCTTEEEE-ECCGGGCC--------C
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC----------CCEEEEEECCHHHHHHHHHhhccCCeEEE-EcchhhCC--------C
Confidence            68899999999999999988763          23999999996 2       123567888 88876521        4


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ++++||+|++......     .      .....+++.+.++|+|||.+++.+
T Consensus       105 ~~~~fD~v~~~~~l~~-----~------~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          105 EPDAYNVVLSSLALHY-----I------ASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             CTTCEEEEEEESCGGG-----C------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCeEEEEEchhhhh-----h------hhHHHHHHHHHHHcCCCcEEEEEe
Confidence            4689999999664311     1      123578899999999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.37  E-value=2.2e-13  Score=110.39  Aligned_cols=122  Identities=13%  Similarity=0.060  Sum_probs=81.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||||||+|.++..+++..         +...|+|||+++ +          ..+.++.++ .+|+.+.     +
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~---------p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~-~~Da~~~-----l   97 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR---------PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVM-CHDAVEV-----L   97 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEE-CSCHHHH-----H
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC---------CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEE-ECCHHHH-----H
Confidence            367899999999999999999875         667999999996 2          134678888 8886542     3


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                      ...++++.||.|++..+.....   ..+..........+..+.++|||||.|++.+........+.+.+..
T Consensus        98 ~~~~~~~~~d~v~~~~~~p~~~---~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~  165 (218)
T 3dxy_A           98 HKMIPDNSLRMVQLFFPDPWHK---ARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS  165 (218)
T ss_dssp             HHHSCTTCEEEEEEESCCCCCS---GGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHcCCCChheEEEeCCCCccc---hhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            3346788999999975421111   0010000001247888999999999999876433223444555544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.37  E-value=7.9e-13  Score=109.48  Aligned_cols=118  Identities=12%  Similarity=0.017  Sum_probs=82.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CC--------------------CCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YP--------------------IDGA  111 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~--------------------~~~~  111 (229)
                      .++.+|||+|||+|..+..|++. |          .+|+|||+|+ |       ..                    ..++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G----------~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-G----------HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI  135 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-T----------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce
Confidence            47889999999999999999875 3          5999999997 2       11                    1457


Q ss_pred             eEEecCCCCChhHHHHHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----  186 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----  186 (229)
                      .++ ++|+.+..        .. .++||+|++.+....  ++.       ......+..+.++|||||.|++..+.    
T Consensus       136 ~~~-~~D~~~l~--------~~~~~~FD~V~~~~~l~~--l~~-------~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~  197 (252)
T 2gb4_A          136 SLY-CCSIFDLP--------RANIGKFDRIWDRGALVA--INP-------GDHDRYADIILSLLRKEFQYLVAVLSYDPT  197 (252)
T ss_dssp             EEE-ESCTTTGG--------GGCCCCEEEEEESSSTTT--SCG-------GGHHHHHHHHHHTEEEEEEEEEEEEECCTT
T ss_pred             EEE-ECccccCC--------cccCCCEEEEEEhhhhhh--CCH-------HHHHHHHHHHHHHcCCCeEEEEEEEecCCc
Confidence            888 99998842        22 278999998765422  111       12346788899999999999643321    


Q ss_pred             ---C----CChHHHHHHHHhhCCeeEE
Q psy1489         187 ---G----RNRPQLEESITRFYSQVKI  206 (229)
Q Consensus       187 ---~----~~~~~~~~~l~~~F~~v~~  206 (229)
                         +    ....++...+...|..+.+
T Consensus       198 ~~~g~~~~~~~~el~~~l~~~f~v~~~  224 (252)
T 2gb4_A          198 KHAGPPFYVPSAELKRLFGTKCSMQCL  224 (252)
T ss_dssp             SCCCSSCCCCHHHHHHHHTTTEEEEEE
T ss_pred             cCCCCCCCCCHHHHHHHhhCCeEEEEE
Confidence               1    1346777777665654433

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.37  E-value=9.2e-13  Score=105.32  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=76.5

Q ss_pred             hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C------CCCCCCeEEecCCCCChhHHHH
Q psy1489          55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+..+.++.+|||+|||+|.++..+++. +          .+|+|+|+++ +      ...+++.++ .+|+.+.     
T Consensus        40 ~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~d~~~~-----  102 (218)
T 3ou2_A           40 RLRAGNIRGDVLELASGTGYWTRHLSGL-A----------DRVTALDGSAEMIAEAGRHGLDNVEFR-QQDLFDW-----  102 (218)
T ss_dssp             HHTTTTSCSEEEEESCTTSHHHHHHHHH-S----------SEEEEEESCHHHHHHHGGGCCTTEEEE-ECCTTSC-----
T ss_pred             HHhcCCCCCeEEEECCCCCHHHHHHHhc-C----------CeEEEEeCCHHHHHHHHhcCCCCeEEE-ecccccC-----
Confidence            3333567789999999999999999887 3          5999999997 2      123578888 9998772     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          +++++||+|++....     +....    .....++..+.++|+|||.+++..+.
T Consensus       103 ----~~~~~~D~v~~~~~l-----~~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          103 ----TPDRQWDAVFFAHWL-----AHVPD----DRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             ----CCSSCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----CCCCceeEEEEechh-----hcCCH----HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                457899999996643     11111    22457889999999999999987553

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.37  E-value=4.8e-12  Score=102.36  Aligned_cols=98  Identities=28%  Similarity=0.366  Sum_probs=73.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +        ...+++.++ .+|+.+....    
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~----  137 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVG--------WEGKIFGIEFSPRVLRELVPIVEERRNIVPI-LGDATKPEEY----  137 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHSSCTTEEEE-ECCTTCGGGG----
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhC--------CCeEEEEEECCHHHHHHHHHHHhccCCCEEE-EccCCCcchh----
Confidence            45789999999999999999999875        557999999997 1        123578888 9998874211    


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+ ++.||+|++|.+.       .+.      ....+..+.++|+|||.+++.
T Consensus       138 ~~~-~~~~D~v~~~~~~-------~~~------~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          138 RAL-VPKVDVIFEDVAQ-------PTQ------AKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             TTT-CCCEEEEEECCCS-------TTH------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcc-cCCceEEEECCCC-------HhH------HHHHHHHHHHhcCCCCEEEEE
Confidence            012 3589999998741       111      224478899999999999886

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.36  E-value=8.2e-12  Score=102.22  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=86.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|||+|||+|.++..+++...          .+|+|+|+++ +.        ...++.++ .+|+.+..       
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~~-------  153 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLY----------ATTDLLEPVKHMLEEAKRELAGMPVGKFI-LASMETAT-------  153 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC----------SEEEEEESCHHHHHHHHHHTTTSSEEEEE-ESCGGGCC-------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhc----------CEEEEEeCCHHHHHHHHHHhccCCceEEE-EccHHHCC-------
Confidence            4688999999999999999988742          5899999986 21        11457788 88876521       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---------------CChHHHHH
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---------------RNRPQLEE  195 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---------------~~~~~~~~  195 (229)
                       ++++.||+|++....     +....    .....++..+.++|+|||.+++.....               ....++..
T Consensus       154 -~~~~~fD~v~~~~~l-----~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (254)
T 1xtp_A          154 -LPPNTYDLIVIQWTA-----IYLTD----ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR  223 (254)
T ss_dssp             -CCSSCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred             -CCCCCeEEEEEcchh-----hhCCH----HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHH
Confidence             456789999996542     11111    234678899999999999999876311               12467777


Q ss_pred             HHHhh-CCeeEEEcC
Q psy1489         196 SITRF-YSQVKILKP  209 (229)
Q Consensus       196 ~l~~~-F~~v~~~kp  209 (229)
                      .+++. |..+.+...
T Consensus       224 ~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          224 LFNESGVRVVKEAFQ  238 (254)
T ss_dssp             HHHHHTCCEEEEEEC
T ss_pred             HHHHCCCEEEEeeec
Confidence            78766 887776654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.36  E-value=1.5e-12  Score=104.44  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC-CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI-DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~-~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      .++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.     .. .++.++ .+|+.+..        +
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~d~~~~~--------~  103 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA-G----------RTVYGIEPSREMRMIAKEKLPKEFSIT-EGDFLSFE--------V  103 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT-T----------CEEEEECSCHHHHHHHHHHSCTTCCEE-SCCSSSCC--------C
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC-C----------CeEEEEeCCHHHHHHHHHhCCCceEEE-eCChhhcC--------C
Confidence            47889999999999999998876 2          5999999997 21     12 378888 99988732        3


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      + ++||+|++....     +....    .....++.++.++|||||.+++..
T Consensus       104 ~-~~fD~v~~~~~l-----~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          104 P-TSIDTIVSTYAF-----HHLTD----DEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             C-SCCSEEEEESCG-----GGSCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             C-CCeEEEEECcch-----hcCCh----HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            3 789999997643     11111    112357889999999999999875

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.36  E-value=1.7e-12  Score=108.90  Aligned_cols=113  Identities=16%  Similarity=0.083  Sum_probs=82.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      +++|.+|||+|||+|.++..+++..         . .+|+|+|+++ +          ..+. .++++ .+|+.+.    
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~---------~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~-~~D~~~~----  187 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYG---------K-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY-NMDNRDF----  187 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT---------C-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE-CSCTTTC----
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhC---------C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-ECCHHHh----
Confidence            4678999999999999999999874         2 2799999997 2          1233 37788 9998873    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC------CChHHHHHHHHhh
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG------RNRPQLEESITRF  200 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~------~~~~~~~~~l~~~  200 (229)
                           ..++.||+|++|.+...               ...+..+.++|+|||.+++..+..      .....+.+.+...
T Consensus       188 -----~~~~~fD~Vi~~~p~~~---------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~  247 (278)
T 2frn_A          188 -----PGENIADRILMGYVVRT---------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY  247 (278)
T ss_dssp             -----CCCSCEEEEEECCCSSG---------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred             -----cccCCccEEEECCchhH---------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHc
Confidence                 22678999999875311               246677899999999999866542      3356666666665


Q ss_pred             CCeeEE
Q psy1489         201 YSQVKI  206 (229)
Q Consensus       201 F~~v~~  206 (229)
                      ...+..
T Consensus       248 G~~~~~  253 (278)
T 2frn_A          248 GYDVEK  253 (278)
T ss_dssp             TCEEEE
T ss_pred             CCeeEE
Confidence            444554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.36  E-value=5.2e-12  Score=103.71  Aligned_cols=95  Identities=17%  Similarity=0.215  Sum_probs=73.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||+|||+|.++..+++..+          ++|+|+|+++ +.          .+. ++.++ .+|+.+..   
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~---  109 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVK----------GQITGIDLFPDFIEIFNENAVKANCADRVKGI-TGSMDNLP---  109 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCC----------SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECCTTSCS---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCC----------CeEEEEECCHHHHHHHHHHHHHcCCCCceEEE-ECChhhCC---
Confidence            56788999999999999999998752          4999999997 21          122 38888 99987632   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                           +++++||+|++......     .+       ...++..+.++|+|||.+++..
T Consensus       110 -----~~~~~fD~v~~~~~l~~-----~~-------~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          110 -----FQNEELDLIWSEGAIYN-----IG-------FERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             -----SCTTCEEEEEEESCSCC-----CC-------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----CCCCCEEEEEecChHhh-----cC-------HHHHHHHHHHHcCCCcEEEEEE
Confidence                 45689999999765421     12       2467889999999999999875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.35  E-value=6.4e-13  Score=109.66  Aligned_cols=95  Identities=19%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..++.+|||+|||+|.++..+++..           ++|+|+|+++ |.          ..+++.+. .+|+.+..    
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~-~~d~~~l~----   98 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV-----------KKVVAFDLTEDILKVARAFIEGNGHQQVEYV-QGDAEQMP----   98 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-----------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCC-CCC----
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-----------CEEEEEeCCHHHHHHHHHHHHhcCCCceEEE-EecHHhCC----
Confidence            3578999999999999999988763           4999999997 31          23568888 99987732    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          ++++.||+|++.....    +..+       ...++.++.++|||||.|++..
T Consensus        99 ----~~~~~fD~V~~~~~l~----~~~d-------~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A           99 ----FTDERFHIVTCRIAAH----HFPN-------PASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             ----SCTTCEEEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCCCCEEEEEEhhhhH----hcCC-------HHHHHHHHHHHcCCCCEEEEEE
Confidence                5568999999976431    1112       2467889999999999999854

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.35  E-value=2.5e-12  Score=105.25  Aligned_cols=94  Identities=14%  Similarity=0.035  Sum_probs=69.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..++...         +.++|+|+|+++ |.          .+++++++ ++|+.+...    
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~~----  134 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF---------PHLHVTIVDSLNKRITFLEKLSEALQLENTTFC-HDRAETFGQ----  134 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEE-ESCHHHHTT----
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEE-eccHHHhcc----
Confidence            467899999999999999999754         567999999997 21          24568888 887644110    


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ....+++||+|+++...        +       ...++..+.++|+|||.|++.
T Consensus       135 -~~~~~~~fD~V~~~~~~--------~-------~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          135 -RKDVRESYDIVTARAVA--------R-------LSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             -CTTTTTCEEEEEEECCS--------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             -cccccCCccEEEEeccC--------C-------HHHHHHHHHHhcCCCCEEEEE
Confidence             00014689999996521        1       346788899999999999874

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.35  E-value=2.4e-12  Score=108.67  Aligned_cols=106  Identities=18%  Similarity=0.095  Sum_probs=75.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.          .++ ++.+. .+|+.+     
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~-----  133 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD----------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR-IQGWEE-----  133 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEE-ECCGGG-----
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-ECCHHH-----
Confidence            46889999999999999999998863          6999999997 21          222 57788 888765     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                           + ++.||+|++.........+..  .........++..+.++|||||.+++..+...
T Consensus       134 -----~-~~~fD~v~~~~~~~~~~d~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          134 -----F-DEPVDRIVSLGAFEHFADGAG--DAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             -----C-CCCCSEEEEESCGGGTTCCSS--CCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             -----c-CCCccEEEEcchHHhcCcccc--ccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence                 3 678999999765321100000  00001235788899999999999998776433

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.35  E-value=1.7e-13  Score=112.30  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..+|.+|||||||+|..+..+++..+          .+|+|||+++ |.         .-.++.++ .+|+.+      +
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~----------~~v~~id~~~~~~~~a~~~~~~~~~~~~~~-~~~a~~------~  120 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI----------DEHWIIECNDGVFQRLRDWAPRQTHKVIPL-KGLWED------V  120 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE----------EEEEEEECCHHHHHHHHHHGGGCSSEEEEE-ESCHHH------H
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC----------cEEEEEeCCHHHHHHHHHHHhhCCCceEEE-eehHHh------h
Confidence            36799999999999999998876532          5899999997 21         12245566 666443      2


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ...+++++||.|+.|..+...      ..........++.++.++|||||.|++.
T Consensus       121 ~~~~~~~~FD~i~~D~~~~~~------~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          121 APTLPDGHFDGILYDTYPLSE------ETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             GGGSCTTCEEEEEECCCCCBG------GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccCCceEEEeeeeccc------chhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            234677899999998754221      1122234567889999999999999763

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.34  E-value=3.9e-12  Score=101.85  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=84.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ..++.+|||+|||+|.++..+++..           .+|+|+|+++ +        ....++.++ .+|+.+.       
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~-------  109 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC-----------KRLTVIDVMPRAIGRACQRTKRWSHISWA-ATDILQF-------  109 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE-----------EEEEEEESCHHHHHHHHHHTTTCSSEEEE-ECCTTTC-------
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHhcccCCCeEEE-EcchhhC-------
Confidence            3567899999999999999988763           4899999996 2        123468888 9998873       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec--------C-CCChHHHHHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW--------D-GRNRPQLEESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~--------~-~~~~~~~~~~l~~~  200 (229)
                        .++++||+|++.....        +.........++..+.++|+|||.+++...        . ......+...+...
T Consensus       110 --~~~~~fD~v~~~~~l~--------~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (216)
T 3ofk_A          110 --STAELFDLIVVAEVLY--------YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA  179 (216)
T ss_dssp             --CCSCCEEEEEEESCGG--------GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             --CCCCCccEEEEccHHH--------hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh
Confidence              1467899999965431        111112345778999999999999998642        2 22344555666666


Q ss_pred             CCeeEEEc
Q psy1489         201 YSQVKILK  208 (229)
Q Consensus       201 F~~v~~~k  208 (229)
                      +..++.+.
T Consensus       180 ~~~~e~~~  187 (216)
T 3ofk_A          180 LTEVERVQ  187 (216)
T ss_dssp             SEEEEEEE
T ss_pred             ccceEEEe
Confidence            66655443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.33  E-value=8.3e-13  Score=108.23  Aligned_cols=122  Identities=9%  Similarity=0.025  Sum_probs=79.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------------CCCCCCeEEecCCCCCh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------------YPIDGAVVLSKCDFTQP  122 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------------~~~~~~~~~~~~D~~~~  122 (229)
                      .++.+|||||||+|.++..+++..         +...|+|+|+++ |                ....++.++ ++|+.+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~-~~d~~~~  114 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLF---------PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACL-RSNAMKH  114 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGS---------TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEE-ECCTTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ECcHHHh
Confidence            467899999999999999998865         567999999996 2                124578899 9998762


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                           +...++++.||.|++..+.....   ..+.........++..+.++|+|||.|++.+........+.+.+..
T Consensus       115 -----l~~~~~~~~~D~v~~~~~dp~~k---~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~  183 (235)
T 3ckk_A          115 -----LPNFFYKGQLTKMFFLFPDPHFK---RTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE  183 (235)
T ss_dssp             -----HHHHCCTTCEEEEEEESCC--------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             -----hhhhCCCcCeeEEEEeCCCchhh---hhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence                 23346678999999865321000   0010000011367889999999999999866432222334444444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.33  E-value=1.6e-11  Score=106.22  Aligned_cols=107  Identities=21%  Similarity=0.209  Sum_probs=79.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+++.+|||+|||+|.++..++...+        +..+|+|+|+++ +          ..+.++++. ++|+.+..    
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~--------~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~-~~D~~~~~----  267 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLG--------PTSPVYAGDLDEKRLGLAREAALASGLSWIRFL-RADARHLP----  267 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHC--------TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEE-ECCGGGGG----
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhC--------CCceEEEEECCHHHHHHHHHHHHHcCCCceEEE-eCChhhCc----
Confidence            45788999999999999999998864        457999999997 2          123368888 99987732    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          .+...||+|++|++.   |.+..+......+...++..+.++|+|||.+++...
T Consensus       268 ----~~~~~~D~Ii~npPy---g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          268 ----RFFPEVDRILANPPH---GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             ----GTCCCCSEEEECCCS---CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             ----cccCCCCEEEECCCC---cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                234568999999875   333222233445567889999999999999998654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.33  E-value=2.5e-12  Score=102.62  Aligned_cols=94  Identities=18%  Similarity=0.202  Sum_probs=70.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++ +|||+|||+|.++..+++..          ..+|+|+|+++ +.          .+ .++.++ .+|+.+..    
T Consensus        43 ~~~-~vLdiG~G~G~~~~~l~~~~----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~----  106 (219)
T 3dlc_A           43 TAG-TCIDIGSGPGALSIALAKQS----------DFSIRALDFSKHMNEIALKNIADANLNDRIQIV-QGDVHNIP----  106 (219)
T ss_dssp             CEE-EEEEETCTTSHHHHHHHHHS----------EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECBTTBCS----
T ss_pred             CCC-EEEEECCCCCHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHhccccCceEEE-EcCHHHCC----
Confidence            344 99999999999999999872          36999999986 21          12 367888 89987732    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          +++++||+|++......     .      .....++.++.++|+|||.+++..
T Consensus       107 ----~~~~~~D~v~~~~~l~~-----~------~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          107 ----IEDNYADLIVSRGSVFF-----W------EDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             ----SCTTCEEEEEEESCGGG-----C------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCcccccEEEECchHhh-----c------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence                45678999999764311     1      123468889999999999998853

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.32  E-value=1.7e-12  Score=106.55  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ |.          .+ .++.+. .+|+.+..   
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~-~~d~~~~~---   99 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHG----------ITGTGIDMSSLFTAQAKRRAEELGVSERVHFI-HNDAAGYV---   99 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTC----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ESCCTTCC---
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcC----------CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ECChHhCC---
Confidence            56889999999999999999998753          5899999997 21          12 368888 99988731   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                           + ++.||+|++......     .      .....++.++.++|||||.+++..
T Consensus       100 -----~-~~~fD~V~~~~~~~~-----~------~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          100 -----A-NEKCDVAACVGATWI-----A------GGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             -----C-SSCEEEEEEESCGGG-----T------SSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -----c-CCCCCEEEECCChHh-----c------CCHHHHHHHHHHHcCCCeEEEEec
Confidence                 2 578999999554311     1      013567899999999999999854

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.32  E-value=3.1e-12  Score=103.28  Aligned_cols=114  Identities=19%  Similarity=0.158  Sum_probs=79.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.          .+ .+++++ .+|+.+.     
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  122 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQ--------PGARLLTMEINPDCAAITQQMLNFAGLQDKVTIL-NGASQDL-----  122 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE-ESCHHHH-----
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCC--------CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEE-ECCHHHH-----
Confidence            4678999999999999999998653        467999999997 21          12 247888 8885431     


Q ss_pred             HHHHhC----CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         128 LVTILK----DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       128 i~~~~~----~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      + ..+.    .++||+|++|...        .+.   ......+..+ ++|+|||.+++.........++.+.++..
T Consensus       123 l-~~~~~~~~~~~fD~V~~d~~~--------~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  186 (221)
T 3u81_A          123 I-PQLKKKYDVDTLDMVFLDHWK--------DRY---LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGS  186 (221)
T ss_dssp             G-GGTTTTSCCCCCSEEEECSCG--------GGH---HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHC
T ss_pred             H-HHHHHhcCCCceEEEEEcCCc--------ccc---hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhC
Confidence            1 1122    2689999998742        111   1122445555 99999999998765555667777777664

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.32  E-value=7.3e-12  Score=106.63  Aligned_cols=126  Identities=16%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|.+|||+|||||+++.++++.++        +.++|+|+|+++ +          ..+.+++++ .+|+.+...   
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~--------~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~-~~D~~~~~~---  167 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLK--------NQGKIFAFDLDAKRLASMATLLARAGVSCCELA-EEDFLAVSP---  167 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHT--------TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCGGGSCT---
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-eCChHhcCc---
Confidence            46789999999999999999999875        568999999996 1          134568888 888765210   


Q ss_pred             HHHHhC-CCCccEEEeCCCCCCCCCCcc-------------cHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCCh
Q psy1489         128 LVTILK-DDKLDVVLSDMAPNATGMREM-------------DHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNR  190 (229)
Q Consensus       128 i~~~~~-~~~~D~V~sd~~~~~~g~~~~-------------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~  190 (229)
                         ... ...||.|++|++....|....             +......++..+|..+.++|+ ||.++..+.+   .++.
T Consensus       168 ---~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene  243 (309)
T 2b9e_A          168 ---SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENE  243 (309)
T ss_dssp             ---TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTH
T ss_pred             ---cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhH
Confidence               000 146999999998766555211             112233455678889999887 9988865433   2344


Q ss_pred             HHHHHHHHhh
Q psy1489         191 PQLEESITRF  200 (229)
Q Consensus       191 ~~~~~~l~~~  200 (229)
                      ..+.+.+.++
T Consensus       244 ~~v~~~l~~~  253 (309)
T 2b9e_A          244 DVVRDALQQN  253 (309)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhC
Confidence            4455556554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=3.1e-12  Score=105.84  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ..++.+|||+|||+|.++..+++.           ..+|+|+|+++ |    ....++.++ .+|+.+..        ++
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~-~~d~~~~~--------~~   91 (261)
T 3ege_A           32 LPKGSVIADIGAGTGGYSVALANQ-----------GLFVYAVEPSIVMRQQAVVHPQVEWF-TGYAENLA--------LP   91 (261)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHTT-----------TCEEEEECSCHHHHHSSCCCTTEEEE-CCCTTSCC--------SC
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhC-----------CCEEEEEeCCHHHHHHHHhccCCEEE-ECchhhCC--------CC
Confidence            357899999999999999998862           36999999997 2    122378888 99987732        45


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      +++||+|++.....     ..      .....++.++.++|| ||.+++..+.
T Consensus        92 ~~~fD~v~~~~~l~-----~~------~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           92 DKSVDGVISILAIH-----HF------SHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             TTCBSEEEEESCGG-----GC------SSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             CCCEeEEEEcchHh-----hc------cCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            68999999976431     11      123578899999999 9988776544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.32  E-value=6e-12  Score=101.57  Aligned_cols=139  Identities=14%  Similarity=0.099  Sum_probs=93.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C---C-----CCCeEEecCCCCCh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P---I-----DGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~---~-----~~~~~~~~~D~~~~  122 (229)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.       .   +     .++.+. .+|+.+.
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~d~~~~   95 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK-G----------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFK-VENASSL   95 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEE-ECCTTSC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC-C----------CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEE-Eeccccc
Confidence            457899999999999999998876 3          5999999986 21       1   1     135777 8888763


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---------------
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---------------  187 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---------------  187 (229)
                      .        ++++.||+|++.....    +..+.    .....+++.+.++|+|||.+++..+..               
T Consensus        96 ~--------~~~~~~D~v~~~~~l~----~~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~  159 (235)
T 3sm3_A           96 S--------FHDSSFDFAVMQAFLT----SVPDP----KERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDF  159 (235)
T ss_dssp             C--------SCTTCEEEEEEESCGG----GCCCH----HHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHH
T ss_pred             C--------CCCCceeEEEEcchhh----cCCCH----HHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhc
Confidence            2        4567899999965431    11111    223468889999999999999865421               


Q ss_pred             -------------------------CChHHHHHHHHhh-CCeeEEEcC---CCCCCCCceEEEEecc
Q psy1489         188 -------------------------RNRPQLEESITRF-YSQVKILKP---PSSRSHSAELFLLGRG  225 (229)
Q Consensus       188 -------------------------~~~~~~~~~l~~~-F~~v~~~kp---~~sr~~s~E~Y~v~~~  225 (229)
                                               ....++.+.+++. |..+.+..+   ........++|+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i~~~~  226 (235)
T 3sm3_A          160 PITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETRTGNKILGFVIIAQK  226 (235)
T ss_dssp             HHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             cchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEecceeeccCCccceEEEeeHH
Confidence                                     2356677777665 665555442   2333456666776644

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=6.4e-12  Score=102.63  Aligned_cols=105  Identities=8%  Similarity=-0.006  Sum_probs=76.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +       ....++.++ ++|+.+......+..
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~d~~~~~~~~~~~~  121 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFF-----------PRVIGLDVSKSALEIAAKENTAANISYR-LLDGLVPEQAAQIHS  121 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHS-----------SCEEEEESCHHHHHHHHHHSCCTTEEEE-ECCTTCHHHHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhC-----------CCEEEEECCHHHHHHHHHhCcccCceEE-ECccccccccccccc
Confidence            5678999999999999999999874           3899999997 2       123478899 999998654332221


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                         +..||+|+++......     +.    .....++..+.++|+|||.+++..+..
T Consensus       122 ---~~~~d~v~~~~~~~~~-----~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          122 ---EIGDANIYMRTGFHHI-----PV----EKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             ---HHCSCEEEEESSSTTS-----CG----GGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             ---ccCccEEEEcchhhcC-----CH----HHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence               2359999997654211     10    123578889999999999988766543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.32  E-value=2.8e-12  Score=104.71  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=84.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C---CCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P---IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~---~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..+++..          ..+|+|+|+++ +.       .   ..++.++ .+|+.+..      
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~~------  141 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL----------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYF-CCGLQDFT------  141 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT----------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEE-ECCGGGCC------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEE-EcChhhcC------
Confidence            58899999999999999887653          25999999996 21       0   1236677 88866521      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC--------------ChHHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR--------------NRPQLEE  195 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~--------------~~~~~~~  195 (229)
                        ++++.||+|+++...     +....    .....++..+.++|+|||.+++..+...              ...++.+
T Consensus       142 --~~~~~fD~v~~~~~l-----~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (241)
T 2ex4_A          142 --PEPDSYDVIWIQWVI-----GHLTD----QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRR  210 (241)
T ss_dssp             --CCSSCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHH
T ss_pred             --CCCCCEEEEEEcchh-----hhCCH----HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHH
Confidence              345689999997643     11111    1235788999999999999998553211              3577888


Q ss_pred             HHHhh-CCeeEEEcC
Q psy1489         196 SITRF-YSQVKILKP  209 (229)
Q Consensus       196 ~l~~~-F~~v~~~kp  209 (229)
                      .+++. |..+.+...
T Consensus       211 ~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          211 IICSAGLSLLAEERQ  225 (241)
T ss_dssp             HHHHTTCCEEEEEEC
T ss_pred             HHHHcCCeEEEeeec
Confidence            88776 877776653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.31  E-value=6.3e-13  Score=110.19  Aligned_cols=95  Identities=17%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||+|||+|.++..+++.          +.++|+|+|+++ +.          .+ +++.++ .+|+.+..   
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~---  109 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH----------VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI-VGSMDDLP---  109 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT----------CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECCTTSCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEE-EcChhhCC---
Confidence            567899999999999999998876          346999999997 21          12 358888 99987732   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                           +++++||+|++......     .+       ...++..+.++|+|||.+++..
T Consensus       110 -----~~~~~fD~i~~~~~~~~-----~~-------~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          110 -----FRNEELDLIWSEGAIYN-----IG-------FERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             -----CCTTCEEEEEESSCGGG-----TC-------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -----CCCCCEEEEEEcCCcee-----cC-------HHHHHHHHHHHcCCCCEEEEEE
Confidence                 45678999999765311     11       2467889999999999999865

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.31  E-value=2e-12  Score=107.96  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=73.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ..++.+|||+|||+|.++..+++.           .++|+|+|+++ |.     ..+++.+. .+|+.+..        +
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~d~~~~~--------~  114 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQS-----------GAEVLGTDNAATMIEKARQNYPHLHFD-VADARNFR--------V  114 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHHCTTSCEE-ECCTTTCC--------C
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhC-----------CCeEEEEECCHHHHHHHHhhCCCCEEE-ECChhhCC--------c
Confidence            357889999999999999998872           26999999997 21     23578888 89987632        2


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                       +++||+|++......    ..+       ...++.++.++|+|||.+++..+...
T Consensus       115 -~~~fD~v~~~~~l~~----~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          115 -DKPLDAVFSNAMLHW----VKE-------PEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             -SSCEEEEEEESCGGG----CSC-------HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             -CCCcCEEEEcchhhh----CcC-------HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence             468999999765311    111       24678899999999999998766543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.31  E-value=9.7e-12  Score=108.60  Aligned_cols=120  Identities=13%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC---CCeEEecCCCCChhHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID---GAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~---~~~~~~~~D~~~~~~~  125 (229)
                      .++.+|||+|||+|.++..+++..         |..+|+|+|+++ +.          .+.   ++.++ .+|+.+.   
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~---------p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~-~~D~~~~---  287 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM-INNALSG---  287 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEE-ECSTTTT---
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHC---------CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEE-echhhcc---
Confidence            356899999999999999999875         567999999997 21          111   36678 8888762   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeE
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVK  205 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~  205 (229)
                            +++++||+|++|++..... ...+     .....++..+.++|+|||.+++........   ...+.+.|..++
T Consensus       288 ------~~~~~fD~Ii~nppfh~~~-~~~~-----~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~---~~~l~~~fg~~~  352 (375)
T 4dcm_A          288 ------VEPFRFNAVLCNPPFHQQH-ALTD-----NVAWEMFHHARRCLKINGELYIVANRHLDY---FHKLKKIFGNCT  352 (375)
T ss_dssp             ------CCTTCEEEEEECCCC--------C-----CHHHHHHHHHHHHEEEEEEEEEEEETTSCH---HHHHHHHHSCCE
T ss_pred             ------CCCCCeeEEEECCCcccCc-ccCH-----HHHHHHHHHHHHhCCCCcEEEEEEECCcCH---HHHHHHhcCCEE
Confidence                  4567899999987652110 0001     123467889999999999999966554444   344556676665


Q ss_pred             EE
Q psy1489         206 IL  207 (229)
Q Consensus       206 ~~  207 (229)
                      +.
T Consensus       353 ~~  354 (375)
T 4dcm_A          353 TI  354 (375)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.31  E-value=5.9e-13  Score=108.28  Aligned_cols=94  Identities=10%  Similarity=0.139  Sum_probs=70.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCC-CCeEEecCCCCChhHHHHHHHHh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PID-GAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~-~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      .++.+|||+|||+|.++..+++..           .+|+|+|+++ +.     ..+ ++.++ .+|+.+.         .
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~v~~~-~~d~~~~---------~   99 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHF-----------NDITCVEASEEAISHAQGRLKDGITYI-HSRFEDA---------Q   99 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC-----------SCEEEEESCHHHHHHHHHHSCSCEEEE-ESCGGGC---------C
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhC-----------CcEEEEeCCHHHHHHHHHhhhCCeEEE-EccHHHc---------C
Confidence            367899999999999999988753           3899999997 21     122 78888 8887652         3


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH-HcccCCCEEEEeec
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAV-TYSKPGADCLIKIW  185 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~-~~LkpgG~~v~~~~  185 (229)
                      ++++||+|++.....     ..      .....+++++. ++|||||.+++...
T Consensus       100 ~~~~fD~v~~~~~l~-----~~------~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          100 LPRRYDNIVLTHVLE-----HI------DDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             CSSCEEEEEEESCGG-----GC------SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCcccEEEEhhHHH-----hh------cCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            467899999965431     11      11247889999 99999999998764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.31  E-value=4.8e-12  Score=102.80  Aligned_cols=138  Identities=10%  Similarity=0.022  Sum_probs=94.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----C----CCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----I----DGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----~----~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++.+|||+|||+|.++..+++. +          .+|+|+|+++ |..     .    .++.++ .+|+.+..      
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~-~----------~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~------   97 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPK-F----------KNTWAVDLSQEMLSEAENKFRSQGLKPRLA-CQDISNLN------   97 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG-S----------SEEEEECSCHHHHHHHHHHHHHTTCCCEEE-CCCGGGCC------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHC-C----------CcEEEEECCHHHHHHHHHHHhhcCCCeEEE-ecccccCC------
Confidence            36789999999999999998875 2          5899999997 210     0    167888 88876521      


Q ss_pred             HHhCCCCccEEEeCC-CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----------------------
Q psy1489         130 TILKDDKLDVVLSDM-APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----------------------  186 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----------------------  186 (229)
                        ++ +.||+|++.. ..        .+.........++..+.++|+|||.+++.+..                      
T Consensus        98 --~~-~~fD~v~~~~~~l--------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (246)
T 1y8c_A           98 --IN-RKFDLITCCLDST--------NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFY  166 (246)
T ss_dssp             --CS-CCEEEEEECTTGG--------GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEE
T ss_pred             --cc-CCceEEEEcCccc--------cccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEE
Confidence              22 6899999954 32        11101123467889999999999999984321                      


Q ss_pred             -----------------------------------CCChHHHHHHHHhh-CCeeEEEcCCC---CCCCCceEEEEeccC
Q psy1489         187 -----------------------------------GRNRPQLEESITRF-YSQVKILKPPS---SRSHSAELFLLGRGF  226 (229)
Q Consensus       187 -----------------------------------~~~~~~~~~~l~~~-F~~v~~~kp~~---sr~~s~E~Y~v~~~~  226 (229)
                                                         .....++...+++. |..+.+.....   ....+..+++||++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~  245 (246)
T 1y8c_A          167 YWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             EEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred             EEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence                                               11457778888776 87777764421   123567788888863

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.30  E-value=2.8e-12  Score=107.64  Aligned_cols=143  Identities=16%  Similarity=0.136  Sum_probs=86.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----CC-------------------C-----
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----ID-------------------G-----  110 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----~~-------------------~-----  110 (229)
                      ++.+|||||||+|.++..++..          +..+|+|+|+++ |..     ..                   +     
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  140 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS----------HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW  140 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG----------GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCH
T ss_pred             CCCeEEEECCCcChHHHHhhcc----------CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccch
Confidence            6789999999999965544432          235999999997 311     00                   0     


Q ss_pred             -----------CeEEecCCCCCh-hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHH----HHHHHHHHHHHHHcc
Q psy1489         111 -----------AVVLSKCDFTQP-DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI----TQLAIAVIRFAVTYS  174 (229)
Q Consensus       111 -----------~~~~~~~D~~~~-~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~----~~~~~~~l~~~~~~L  174 (229)
                                 +.++ .+|+.+. ...   ...+++++||+|++....           ..    ......++.++.++|
T Consensus       141 ~~~~~~~~~~~~~~~-~~D~~~~~~~~---~~~~~~~~fD~V~~~~~l-----------~~~~~~~~~~~~~l~~~~r~L  205 (289)
T 2g72_A          141 QDKERQLRARVKRVL-PIDVHQPQPLG---AGSPAPLPADALVSAFCL-----------EAVSPDLASFQRALDHITTLL  205 (289)
T ss_dssp             HHHHHHHHHHEEEEE-CCCTTSSSTTC---SSCSSCSSEEEEEEESCH-----------HHHCSSHHHHHHHHHHHHTTE
T ss_pred             hhhHHHHHhhhceEE-ecccCCCCCcc---ccccCCCCCCEEEehhhh-----------hhhcCCHHHHHHHHHHHHHhc
Confidence                       2234 4466541 100   001334679999996532           22    334568899999999


Q ss_pred             cCCCEEEEeec---------------CCCChHHHHHHHHhh-CCeeEEEcCC----CC--CCCCceEEEEeccCCC
Q psy1489         175 KPGADCLIKIW---------------DGRNRPQLEESITRF-YSQVKILKPP----SS--RSHSAELFLLGRGFKG  228 (229)
Q Consensus       175 kpgG~~v~~~~---------------~~~~~~~~~~~l~~~-F~~v~~~kp~----~s--r~~s~E~Y~v~~~~~~  228 (229)
                      ||||.|++...               ......++...+... |..+.+..-.    ..  .....-+++|+.+.++
T Consensus       206 kpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (289)
T 2g72_A          206 RPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVG  281 (289)
T ss_dssp             EEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC
T ss_pred             CCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEeccc
Confidence            99999987521               112457778888776 7655544322    11  1344457777766543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.30  E-value=7.3e-12  Score=101.76  Aligned_cols=95  Identities=15%  Similarity=0.122  Sum_probs=67.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++++.+|||+|||+|.++..+++.            .+|+|+|+++ +.         .-.++.++ .+|+.+..     
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~-----   92 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH------------YEVTGVDLSEEMLEIAQEKAMETNRHVDFW-VQDMRELE-----   92 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT------------SEEEEEESCHHHHHHHHHHHHHTTCCCEEE-ECCGGGCC-----
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC------------CeEEEEECCHHHHHHHHHhhhhcCCceEEE-EcChhhcC-----
Confidence            456789999999999998887654            4899999997 21         11357888 88876521     


Q ss_pred             HHHhCCCCccEEEeCC-CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDM-APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         + +++||+|++.. ..        .+.........+++.+.++|+|||.+++.
T Consensus        93 ---~-~~~fD~v~~~~~~~--------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           93 ---L-PEPVDAITILCDSL--------NYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ---C-SSCEEEEEECTTGG--------GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---C-CCCcCEEEEeCCch--------hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence               2 36899999854 21        11111133457889999999999999874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.30  E-value=3.4e-12  Score=100.57  Aligned_cols=117  Identities=21%  Similarity=0.156  Sum_probs=80.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.          ..+++.++ .+|+.+..     
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~~-----   93 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN-G----------YDVDAWDKNAMSIANVERIKSIENLDNLHTR-VVDLNNLT-----   93 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHHTCTTEEEE-ECCGGGCC-----
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHHhCCCCCcEEE-EcchhhCC-----
Confidence            35679999999999999998876 3          5999999997 21          23467888 88876631     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec-C------------CCChHHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW-D------------GRNRPQLEE  195 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~-~------------~~~~~~~~~  195 (229)
                         + ++.||+|++......     .+    .+....++..+.++|+|||.+++..+ .            .....++.+
T Consensus        94 ---~-~~~~D~v~~~~~l~~-----~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (199)
T 2xvm_A           94 ---F-DRQYDFILSTVVLMF-----LE----AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRR  160 (199)
T ss_dssp             ---C-CCCEEEEEEESCGGG-----SC----GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHH
T ss_pred             ---C-CCCceEEEEcchhhh-----CC----HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHH
Confidence               2 578999999764311     11    01235678899999999999876432 1            113456666


Q ss_pred             HHHhhCCeeEEE
Q psy1489         196 SITRFYSQVKIL  207 (229)
Q Consensus       196 ~l~~~F~~v~~~  207 (229)
                      .+.. |..+...
T Consensus       161 ~~~~-f~~~~~~  171 (199)
T 2xvm_A          161 YYEG-WERVKYN  171 (199)
T ss_dssp             HTTT-SEEEEEE
T ss_pred             HhcC-CeEEEec
Confidence            6666 6655544

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.30  E-value=1.6e-12  Score=108.05  Aligned_cols=101  Identities=19%  Similarity=0.250  Sum_probs=76.0

Q ss_pred             hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChh
Q psy1489          55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~  123 (229)
                      ....+.++.+|||+|||+|.++..+++..         |..+|+|+|+++ +          ..++++.++ .+|+.+..
T Consensus        31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~~  100 (276)
T 3mgg_A           31 HDTVYPPGAKVLEAGCGIGAQTVILAKNN---------PDAEITSIDISPESLEKARENTEKNGIKNVKFL-QANIFSLP  100 (276)
T ss_dssp             TTCCCCTTCEEEETTCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCGGGCC
T ss_pred             hcccCCCCCeEEEecCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE-EcccccCC
Confidence            33345788999999999999999999874         567999999996 2          124578888 88877532


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                              +++++||+|++......    ..+       ...++..+.++|+|||.+++..
T Consensus       101 --------~~~~~fD~v~~~~~l~~----~~~-------~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          101 --------FEDSSFDHIFVCFVLEH----LQS-------PEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             --------SCTTCEEEEEEESCGGG----CSC-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCCCeeEEEEechhhh----cCC-------HHHHHHHHHHHcCCCcEEEEEE
Confidence                    45678999999764311    111       2367888999999999999854

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.30  E-value=1.2e-11  Score=102.25  Aligned_cols=113  Identities=25%  Similarity=0.333  Sum_probs=83.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++. .          .+. +.+. .+|+.+      
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~-g----------~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~-~~d~~~------  178 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL-G----------GKALGVDIDPMVLPQAEANAKRNGVR-PRFL-EGSLEA------  178 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T----------CEEEEEESCGGGHHHHHHHHHHTTCC-CEEE-ESCHHH------
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh-C----------CeEEEEECCHHHHHHHHHHHHHcCCc-EEEE-ECChhh------
Confidence            467899999999999999987764 3          29999999972 1          122 6777 776443      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI  206 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~  206 (229)
                         .+++++||+|+++...              +.....+..+.++|+|||.+++..+......++.+.+++. |..+.+
T Consensus       179 ---~~~~~~fD~Vv~n~~~--------------~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          179 ---ALPFGPFDLLVANLYA--------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             ---HGGGCCEEEEEEECCH--------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             ---cCcCCCCCEEEECCcH--------------HHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence               2445789999996531              1235678889999999999998766556677888888776 765554


Q ss_pred             E
Q psy1489         207 L  207 (229)
Q Consensus       207 ~  207 (229)
                      .
T Consensus       242 ~  242 (254)
T 2nxc_A          242 A  242 (254)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.30  E-value=6.3e-13  Score=109.25  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ..++.+|||+|||+|.++..+++..         +.++|+|+|+++ |.     ..+++.++ .+|+.+.         .
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~---------~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~d~~~~---------~   91 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRY---------GVNVITGIDSDDDMLEKAADRLPNTNFG-KADLATW---------K   91 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHH---------CTTSEEEEESCHHHHHHHHHHSTTSEEE-ECCTTTC---------C
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHhCCCcEEE-ECChhhc---------C
Confidence            3577899999999999999999886         457999999997 21     14678888 9998762         1


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ++++||+|++.....     ..      .....++.++.++|+|||.+++..+.
T Consensus        92 ~~~~fD~v~~~~~l~-----~~------~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           92 PAQKADLLYANAVFQ-----WV------PDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             CSSCEEEEEEESCGG-----GS------TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             ccCCcCEEEEeCchh-----hC------CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            357899999966431     11      12346888999999999999987654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.29  E-value=6.2e-12  Score=98.15  Aligned_cols=115  Identities=16%  Similarity=0.215  Sum_probs=83.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +          ... .++.+. .+|+.+     
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-----------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~-----   93 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-----------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM-EGDAPE-----   93 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-----------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE-ESCHHH-----
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-----------CEEEEEECCHHHHHHHHHHHHHcCCCcceEEE-ecCHHH-----
Confidence            4678899999999999999988752           5999999986 1          122 466777 776443     


Q ss_pred             HHHHHhCC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489         127 RLVTILKD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       127 ~i~~~~~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v  204 (229)
                          .++. ..||+|+++...     +   +      ....+..+.++|+|||.+++..+......++.+.++.. | .+
T Consensus        94 ----~~~~~~~~D~v~~~~~~-----~---~------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~-~~  154 (192)
T 1l3i_A           94 ----ALCKIPDIDIAVVGGSG-----G---E------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF-DV  154 (192)
T ss_dssp             ----HHTTSCCEEEEEESCCT-----T---C------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC-CC
T ss_pred             ----hcccCCCCCEEEECCch-----H---H------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC-ce
Confidence                1333 589999997642     1   1      24678889999999999998776655667777777776 6 55


Q ss_pred             EEEcC
Q psy1489         205 KILKP  209 (229)
Q Consensus       205 ~~~kp  209 (229)
                      +....
T Consensus       155 ~~~~~  159 (192)
T 1l3i_A          155 NITEL  159 (192)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.28  E-value=2.9e-12  Score=110.02  Aligned_cols=110  Identities=22%  Similarity=0.240  Sum_probs=78.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------------------CCCCCeEEec
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------------PIDGAVVLSK  116 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------------~~~~~~~~~~  116 (229)
                      +.++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +.                     ...+++++ .
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~-~  173 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVG--------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI-H  173 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE-E
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE-E
Confidence            46789999999999999999998875        568999999986 10                     02468888 8


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                      +|+.+..      ..++++.||+|++|+...                ...+..+.++|+|||.+++.........++++.
T Consensus       174 ~d~~~~~------~~~~~~~fD~V~~~~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  231 (336)
T 2b25_A          174 KDISGAT------EDIKSLTFDAVALDMLNP----------------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDG  231 (336)
T ss_dssp             SCTTCCC-------------EEEEEECSSST----------------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             CChHHcc------cccCCCCeeEEEECCCCH----------------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            9987731      013456799999987421                125677999999999999876654445555665


Q ss_pred             HHh
Q psy1489         197 ITR  199 (229)
Q Consensus       197 l~~  199 (229)
                      ++.
T Consensus       232 l~~  234 (336)
T 2b25_A          232 IRT  234 (336)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.28  E-value=2.7e-11  Score=99.49  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=70.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------C-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------I-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|..+..+++.++        +.++|+++|+++ +..          + .+++++ .+|..+.  ...
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~--------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~-~gda~~~--l~~  127 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALP--------DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLR-LGPALDT--LHS  127 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSC--------TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEE-ESCHHHH--HHH
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH--HHH
Confidence            4578999999999999999998764        468999999998 321          2 357788 8875542  111


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.....+++||+|++|...        .      .....+..+.++|+|||.+++.
T Consensus       128 ~~~~~~~~~fD~V~~d~~~--------~------~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          128 LLNEGGEHQFDFIFIDADK--------T------NYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             HHHHHCSSCEEEEEEESCG--------G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhccCCCCEeEEEEcCCh--------H------HhHHHHHHHHHhcCCCeEEEEE
Confidence            1111124689999998742        1      1234678899999999999984

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.28  E-value=7.4e-12  Score=99.66  Aligned_cols=109  Identities=18%  Similarity=0.074  Sum_probs=77.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..+++..         . .+|+|+|+++ +        ...+++.++ .+|+.+..      
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~---------~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~-~~d~~~~~------  102 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGG---------F-PNVTSVDYSSVVVAAMQACYAHVPQLRWE-TMDVRKLD------  102 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTT---------C-CCEEEEESCHHHHHHHHHHTTTCTTCEEE-ECCTTSCC------
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcC---------C-CcEEEEeCCHHHHHHHHHhcccCCCcEEE-EcchhcCC------
Confidence            4678999999999999999988762         2 3899999996 2        122578888 89987731      


Q ss_pred             HHhCCCCccEEEeCCCCCC----CC-CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         130 TILKDDKLDVVLSDMAPNA----TG-MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~----~g-~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                        ++++.||+|+++++...    .+ .+... .........++.++.++|+|||.+++..+..
T Consensus       103 --~~~~~fD~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          103 --FPSASFDVVLEKGTLDALLAGERDPWTVS-SEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             --SCSSCEEEEEEESHHHHHTTTCSCTTSCC-HHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             --CCCCcccEEEECcchhhhccccccccccc-cchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence              45678999998653210    00 01111 1223455788999999999999999877654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.28  E-value=1.3e-11  Score=99.14  Aligned_cols=101  Identities=16%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------------CCCCCeEEecCCCCChh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------------PIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------------~~~~~~~~~~~D~~~~~  123 (229)
                      ..++.+|||+|||+|.++..+++..         |.++|+|+|+++ |.              ..+++.++ ++|+.+..
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~---------p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~-~~d~~~l~   94 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQN---------PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYL-WATAERLP   94 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHC---------TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEE-ECCSTTCC
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEE-ecchhhCC
Confidence            4578999999999999999999875         568999999998 21              13467888 99988732


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                              ++++. |.|+..++.      ...+.........++.++.++|||||.+++..
T Consensus        95 --------~~~~~-d~v~~~~~~------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A           95 --------PLSGV-GELHVLMPW------GSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             --------SCCCE-EEEEEESCC------HHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             --------CCCCC-CEEEEEccc------hhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence                    33444 777754321      00010122222578899999999999999854

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.28  E-value=4.5e-12  Score=105.86  Aligned_cols=116  Identities=13%  Similarity=0.246  Sum_probs=85.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.          .+ +++.++ .+|+.+.    
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~----  176 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVG--------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK-VRDISEG----  176 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTT--------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE-CCCGGGC----
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE-ECCHHHc----
Confidence            46789999999999999999998865        668999999986 10          12 357777 8887652    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVK  205 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~  205 (229)
                           ++++.||+|++|++.                ...++..+.++|+|||.+++.........++.+.++.. |..+.
T Consensus       177 -----~~~~~~D~V~~~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          177 -----FDEKDVDALFLDVPD----------------PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  235 (277)
T ss_dssp             -----CSCCSEEEEEECCSC----------------GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             -----ccCCccCEEEECCcC----------------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeE
Confidence                 455789999997632                12467778999999999998765444455666666654 66555


Q ss_pred             EEc
Q psy1489         206 ILK  208 (229)
Q Consensus       206 ~~k  208 (229)
                      +.+
T Consensus       236 ~~~  238 (277)
T 1o54_A          236 VWE  238 (277)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            554

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.28  E-value=3e-12  Score=107.90  Aligned_cols=101  Identities=11%  Similarity=0.075  Sum_probs=73.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC------------CCCCCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY------------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~------------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      .++.+|||+|||+|.++..+++...        +..+|+|+|+++ +.            ...++.++ ++|+.+.....
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~-~~d~~~~~~~~  105 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELK--------PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK-ISSSDDFKFLG  105 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSS--------CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEE-ECCTTCCGGGC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC--------CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEE-EcCHHhCCccc
Confidence            4789999999999999999998653        457999999997 21            14578899 99998743100


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                        ...+..++||+|++.....     ..       ....++.++.++|+|||.|++.
T Consensus       106 --~~~~~~~~fD~V~~~~~l~-----~~-------~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          106 --ADSVDKQKIDMITAVECAH-----WF-------DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             --TTTTTSSCEEEEEEESCGG-----GS-------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cccccCCCeeEEeHhhHHH-----Hh-------CHHHHHHHHHHhcCCCcEEEEE
Confidence              0001127899999976431     11       2357888999999999999873

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.28  E-value=2.7e-12  Score=105.44  Aligned_cols=113  Identities=20%  Similarity=0.255  Sum_probs=83.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.           ..+++.+. .+|+.+.    
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~-~~d~~~~----  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVG--------EKGLVESYEARPHHLAQAERNVRAFWQVENVRFH-LGKLEEA----  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEE-ESCGGGC----
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEE-ECchhhc----
Confidence            46789999999999999999999865        568999999986 10           23567788 8887652    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v  204 (229)
                          .++++.||+|+++++.                ...++..+.++|+|||.+++.........++.+.++.. |..+
T Consensus       161 ----~~~~~~~D~v~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~  219 (258)
T 2pwy_A          161 ----ELEEAAYDGVALDLME----------------PWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLE  219 (258)
T ss_dssp             ----CCCTTCEEEEEEESSC----------------GGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEE
T ss_pred             ----CCCCCCcCEEEECCcC----------------HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceE
Confidence                1455789999997531                12567789999999999998765544455666666543 5433

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.28  E-value=9.8e-12  Score=102.67  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=69.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|..+..++...         +..+|+|+|+++ +          ..+.+++++ ++|+.+..     
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~-~~d~~~~~-----  143 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR---------PELELVLVDATRKKVAFVERAIEVLGLKGARAL-WGRAEVLA-----  143 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEE-ECCHHHHT-----
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEE-ECcHHHhh-----
Confidence            467899999999999999999875         568999999996 2          134568888 88765411     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .....+++||+|+|....        +       ...++..+.++|+|||.|++-
T Consensus       144 ~~~~~~~~fD~I~s~a~~--------~-------~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          144 REAGHREAYARAVARAVA--------P-------LCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             TSTTTTTCEEEEEEESSC--------C-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccccCCCceEEEECCcC--------C-------HHHHHHHHHHHcCCCeEEEEE
Confidence            000113689999996531        1       235778899999999998863

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.28  E-value=7.3e-12  Score=101.79  Aligned_cols=96  Identities=13%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+++ +       ....++.++ .+|+.+..       
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~d~~~~~-------  111 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT-G----------YKAVGVDISEVMIQKGKERGEGPDLSFI-KGDLSSLP-------  111 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHTTTCBTTEEEE-ECBTTBCS-------
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc-C----------CeEEEEECCHHHHHHHHhhcccCCceEE-EcchhcCC-------
Confidence            457899999999999999998876 3          5999999996 2       123568888 89988732       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       +++++||+|++......    ..+       ...++..+.++|+|||.+++..+
T Consensus       112 -~~~~~fD~v~~~~~l~~----~~~-------~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          112 -FENEQFEAIMAINSLEW----TEE-------PLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             -SCTTCEEEEEEESCTTS----SSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCCCccEEEEcChHhh----ccC-------HHHHHHHHHHHhCCCeEEEEEEc
Confidence             45789999999664321    111       24678889999999999998764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.28  E-value=2.1e-12  Score=105.51  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=73.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..+++..           .+|+|+|+++ +.          .++++.+. .+|+.+..    
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~----   82 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV-----------QECIGVDATKEMVEVASSFAQEKGVENVRFQ-QGTAESLP----   82 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-----------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEE-ECBTTBCC----
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC-----------CEEEEEECCHHHHHHHHHHHHHcCCCCeEEE-ecccccCC----
Confidence            5678999999999999999988753           4999999997 21          23568888 88887632    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          ++++.||+|++.....    +..+       ...++.++.++|+|||.+++..+.
T Consensus        83 ----~~~~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           83 ----FPDDSFDIITCRYAAH----HFSD-------VRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             ----SCTTCEEEEEEESCGG----GCSC-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----CCCCcEEEEEECCchh----hccC-------HHHHHHHHHHHcCCCcEEEEEEcC
Confidence                4567899999975431    1111       346788999999999999986543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.27  E-value=2e-12  Score=107.52  Aligned_cols=137  Identities=13%  Similarity=0.068  Sum_probs=80.2

Q ss_pred             CCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEE
Q psy1489          18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLV   97 (229)
Q Consensus        18 ~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v   97 (229)
                      +....|..  .+..|........+..+.    ..+.+... +.++.+|||||||+|.++..++++.           ++|
T Consensus         9 s~a~~wd~--~a~~f~~~~~~~~~~~~~----~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g-----------~~V   70 (261)
T 3iv6_A            9 SKAEAWEL--IGNQFWTIGRVAARPSDR----ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG-----------ASV   70 (261)
T ss_dssp             TTHHHHHT--TTTHHHHTSCGGGSCCHH----HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT-----------CEE
T ss_pred             hhhhHHHH--HHHHHHHHhhccccHHHH----HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC-----------CEE
Confidence            34567864  466776543332212111    11222223 4678999999999999999998763           599


Q ss_pred             EEEeCCC-CCC-----CCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q psy1489          98 LSVDKLP-IYP-----IDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAV  171 (229)
Q Consensus        98 ~gvD~~~-~~~-----~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~  171 (229)
                      +|+|+|+ |..     .... .+ +.++.+....  +.. ..+++||+|+++....     ...    ......++..+.
T Consensus        71 ~gvD~S~~ml~~Ar~~~~~~-~v-~~~~~~~~~~--~~~-~~~~~fD~Vv~~~~l~-----~~~----~~~~~~~l~~l~  136 (261)
T 3iv6_A           71 TVFDFSQRMCDDLAEALADR-CV-TIDLLDITAE--IPK-ELAGHFDFVLNDRLIN-----RFT----TEEARRACLGML  136 (261)
T ss_dssp             EEEESCHHHHHHHHHHTSSS-CC-EEEECCTTSC--CCG-GGTTCCSEEEEESCGG-----GSC----HHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHhc-cc-eeeeeecccc--ccc-ccCCCccEEEEhhhhH-----hCC----HHHHHHHHHHHH
Confidence            9999997 311     1111 12 3333332100  000 1146899999976431     111    123456788899


Q ss_pred             HcccCCCEEEEeecCC
Q psy1489         172 TYSKPGADCLIKIWDG  187 (229)
Q Consensus       172 ~~LkpgG~~v~~~~~~  187 (229)
                      ++| |||.+++....+
T Consensus       137 ~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          137 SLV-GSGTVRASVKLG  151 (261)
T ss_dssp             HHH-TTSEEEEEEEBS
T ss_pred             HhC-cCcEEEEEeccC
Confidence            999 999999876443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.27  E-value=1.5e-11  Score=104.85  Aligned_cols=138  Identities=12%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C---CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P---IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~---~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +|||||||+|.++..++++.         +..+|++||+++ +.       .   .++++++ .+|..+      ....+
T Consensus        92 rVLdIG~G~G~la~~la~~~---------p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~-~~Da~~------~l~~~  155 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVY---------PQSRNTVVELDAELARLSREWFDIPRAPRVKIR-VDDARM------VAESF  155 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHS---------TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEE-ESCHHH------HHHTC
T ss_pred             EEEEEECCcCHHHHHHHHHC---------CCcEEEEEECCHHHHHHHHHhccccCCCceEEE-ECcHHH------HHhhc
Confidence            99999999999999999875         557999999997 21       1   2467888 887554      11223


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC---hHHHHHHHHhhCCeeEEEc-
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN---RPQLEESITRFYSQVKILK-  208 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~---~~~~~~~l~~~F~~v~~~k-  208 (229)
                      ++++||+|++|..... +..  .+.    .....++.+.++|+|||.|++.......   ...++..++..|..+.++. 
T Consensus       156 ~~~~fDvIi~D~~~~~-~~~--~~L----~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~  228 (317)
T 3gjy_A          156 TPASRDVIIRDVFAGA-ITP--QNF----TTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIAD  228 (317)
T ss_dssp             CTTCEEEEEECCSTTS-CCC--GGG----SBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEEC
T ss_pred             cCCCCCEEEECCCCcc-ccc--hhh----hHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEe
Confidence            4678999999875321 111  111    0136788899999999999987765443   3467788888999998875 


Q ss_pred             CCCCCC-CCceEEEEec
Q psy1489         209 PPSSRS-HSAELFLLGR  224 (229)
Q Consensus       209 p~~sr~-~s~E~Y~v~~  224 (229)
                      |..++. ...-+.++|.
T Consensus       229 ~~~~~g~~~gN~Vl~As  245 (317)
T 3gjy_A          229 PPMLKGRRYGNIILMGS  245 (317)
T ss_dssp             HHHHTTSSCEEEEEEEE
T ss_pred             cCCCCCCcCceEEEEEE
Confidence            222232 2334445553

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.27  E-value=7.5e-12  Score=105.51  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC--------------------------
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI--------------------------  108 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~--------------------------  108 (229)
                      ++.+|||+|||+|.++..+++..         +..+|+|+|+++ |.     .+                          
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~---------~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKW---------GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEG  116 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHT---------CCSEEEEEESCHHHHHHHHHTC--------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHc---------CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence            57899999999999999999986         456999999986 10     00                          


Q ss_pred             -------------------------------------CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCC
Q psy1489         109 -------------------------------------DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGM  151 (229)
Q Consensus       109 -------------------------------------~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~  151 (229)
                                                           .++.+. ++|+.+....  +. .+.++.||+|+|....     
T Consensus       117 ~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~-~~d~~~~~~~--~~-~~~~~~fD~I~~~~vl-----  187 (292)
T 3g07_A          117 TTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFV-TGNYVLDRDD--LV-EAQTPEYDVVLCLSLT-----  187 (292)
T ss_dssp             -------------------------CCSSTTCCSSTTTTEEEE-ECCCCCSSHH--HH-TTCCCCEEEEEEESCH-----
T ss_pred             cccccccccccchhhhccCccccccccccccccccccccceEE-ecccccCccc--cc-cccCCCcCEEEEChHH-----
Confidence                                                 367888 8988763210  11 1356789999995431     


Q ss_pred             CcccHHH---HHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         152 REMDHDL---ITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       152 ~~~d~~~---~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         .+..   .......+++.+.++|+|||.|++..
T Consensus       188 ---~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          188 ---KWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ---HHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence               1211   22356788999999999999999853

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.27  E-value=8.5e-12  Score=105.90  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.          .+ .++.++ .+|+.+..   
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~---  180 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFG----------SRVEGVTLSAAQADFGNRRARELRIDDHVRSR-VCNMLDTP---  180 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECCTTSCC---
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEE-ECChhcCC---
Confidence            46789999999999999999998753          6999999997 21          12 258888 99988732   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           ++++.||+|++.....     ..+       ...++.++.++|||||.+++..+
T Consensus       181 -----~~~~~fD~V~~~~~l~-----~~~-------~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          181 -----FDKGAVTASWNNESTM-----YVD-------LHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             -----CCTTCEEEEEEESCGG-----GSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----CCCCCEeEEEECCchh-----hCC-------HHHHHHHHHHHcCCCcEEEEEEc
Confidence                 4568999999965431     112       45788999999999999998664

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.27  E-value=3.9e-12  Score=103.41  Aligned_cols=95  Identities=21%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .++.+|||+|||+|.++..+++. +         ..+|+|+|+++ +       ....++.++ .+|+.+..        
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~d~~~~~--------  102 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-G---------ASYVLGLDLSEKMLARARAAGPDTGITYE-RADLDKLH--------  102 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T---------CSEEEEEESCHHHHHHHHHTSCSSSEEEE-ECCGGGCC--------
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-C---------CCeEEEEcCCHHHHHHHHHhcccCCceEE-EcChhhcc--------
Confidence            46789999999999999998875 2         23899999996 2       112357788 88876521        


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ++++.||+|++.....     ..+      ....++..+.++|+|||.+++.+
T Consensus       103 ~~~~~fD~v~~~~~l~-----~~~------~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          103 LPQDSFDLAYSSLALH-----YVE------DVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CCTTCEEEEEEESCGG-----GCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCceEEEEecccc-----ccc------hHHHHHHHHHHhcCcCcEEEEEe
Confidence            4467899999966431     111      13467888999999999999865

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.26  E-value=3.2e-12  Score=103.76  Aligned_cols=94  Identities=12%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC--CCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI--DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~--~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++.+|||+|||+|..+..+++.++        +.++|+++|+++ +          ..+  .+++++ .+|..+      
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~-~gda~~------  120 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLA--------DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL-LSRPLD------  120 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSC--------TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE-CSCHHH------
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE-EcCHHH------
Confidence            345999999999999999999874        568999999997 2          122  257788 887544      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +...+.+++||+|++|....        .      ....+..+.++|+|||.+++.
T Consensus       121 ~l~~~~~~~fD~V~~d~~~~--------~------~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          121 VMSRLANDSYQLVFGQVSPM--------D------LKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             HGGGSCTTCEEEEEECCCTT--------T------HHHHHHHHHHHEEEEEEEEET
T ss_pred             HHHHhcCCCcCeEEEcCcHH--------H------HHHHHHHHHHHcCCCcEEEEe
Confidence            11223357899999987431        1      234678899999999999974

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.26  E-value=6.5e-12  Score=104.67  Aligned_cols=117  Identities=19%  Similarity=0.298  Sum_probs=86.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------C--CCCCeEEecCCCCChhH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------P--IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~--~~~~~~~~~~D~~~~~~  124 (229)
                      +.++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.           .  ..++.++ .+|+.+.  
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~-~~d~~~~--  165 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVG--------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV-VSDLADS--  165 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE-CSCGGGC--
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEE-ECchHhc--
Confidence            46789999999999999999998775        568999999986 20           1  3467888 8887652  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh--hCC
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR--FYS  202 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~--~F~  202 (229)
                            .++++.||+|+++++.                ...++..+.++|+|||.+++.........++...++.  .|.
T Consensus       166 ------~~~~~~~D~v~~~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          166 ------ELPDGSVDRAVLDMLA----------------PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             ------CCCTTCEEEEEEESSC----------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             ------CCCCCceeEEEECCcC----------------HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence                  1346789999997631                1246778999999999999877655555666666664  365


Q ss_pred             eeEEEc
Q psy1489         203 QVKILK  208 (229)
Q Consensus       203 ~v~~~k  208 (229)
                      .+.++.
T Consensus       224 ~~~~~~  229 (280)
T 1i9g_A          224 EPRAWE  229 (280)
T ss_dssp             CCEEEC
T ss_pred             CcEEEE
Confidence            555543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.26  E-value=2.3e-11  Score=106.47  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C---------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y---------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~---------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.+|||+|||+|.++..++++ +          .+|+|+|+++. .         .-..++++ .+|+.+..       
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-g----------~~V~gvDis~~al~~A~~n~~~~~~~v~~~-~~D~~~~~-------  293 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-G----------AEVVGVEDDLASVLSLQKGLEANALKAQAL-HSDVDEAL-------  293 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-T----------CEEEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTTTS-------
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-C----------CEEEEEECCHHHHHHHHHHHHHcCCCeEEE-Ecchhhcc-------
Confidence            6789999999999999999876 3          59999999972 1         11137888 89988731       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~  207 (229)
                       .++++||+|++|.+....+....      ......+..+.++|+|||.+++........   ...+...|..++..
T Consensus       294 -~~~~~fD~Ii~npp~~~~~~~~~------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~---~~~l~~~f~~v~~l  360 (381)
T 3dmg_A          294 -TEEARFDIIVTNPPFHVGGAVIL------DVAQAFVNVAAARLRPGGVFFLVSNPFLKY---EPLLEEKFGAFQTL  360 (381)
T ss_dssp             -CTTCCEEEEEECCCCCTTCSSCC------HHHHHHHHHHHHHEEEEEEEEEEECTTSCH---HHHHHHHHSCCEEE
T ss_pred             -ccCCCeEEEEECCchhhcccccH------HHHHHHHHHHHHhcCcCcEEEEEEcCCCCh---HHHHHHhhccEEEE
Confidence             22478999999876533221111      234578889999999999999976554433   34455557666655

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.26  E-value=1.6e-11  Score=99.76  Aligned_cols=97  Identities=24%  Similarity=0.354  Sum_probs=72.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..+++..         +.++|+|+|+++ +        ...+++.++ .+|+.++...    
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~-~~d~~~~~~~----  137 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIA---------DKGIVYAIEYAPRIMRELLDACAERENIIPI-LGDANKPQEY----  137 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHT---------TTSEEEEEESCHHHHHHHHHHTTTCTTEEEE-ECCTTCGGGG----
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHc---------CCcEEEEEECCHHHHHHHHHHhhcCCCeEEE-ECCCCCcccc----
Confidence            4578999999999999999999886         457999999996 2        123578888 8998873210    


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+. +.||+|+.+...       .+      ....++..+.++|+|||.+++.
T Consensus       138 ~~~~-~~~D~v~~~~~~-------~~------~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          138 ANIV-EKVDVIYEDVAQ-------PN------QAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             TTTS-CCEEEEEECCCS-------TT------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccC-ccEEEEEEecCC-------hh------HHHHHHHHHHHhCCCCcEEEEE
Confidence            0123 689999976421       11      1245688899999999999985

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.25  E-value=2.5e-11  Score=106.43  Aligned_cols=97  Identities=11%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------------CC--CCCeEEecCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------------PI--DGAVVLSKCD  118 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------------~~--~~~~~~~~~D  118 (229)
                      +.++++|||||||+|.++..++...         +..+|+|||+++ +.                 .+  .++.++ ++|
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~---------g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi-~GD  240 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAAT---------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE-RGD  240 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHC---------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE-ECC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE-ECc
Confidence            5689999999999999999998875         345799999995 10                 11  468899 999


Q ss_pred             CCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.+......    +  ..||+|+++...    .   .     ......|.+++++|||||+||+.
T Consensus       241 ~~~lp~~d~----~--~~aDVVf~Nn~~----F---~-----pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          241 FLSEEWRER----I--ANTSVIFVNNFA----F---G-----PEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             TTSHHHHHH----H--HTCSEEEECCTT----C---C-----HHHHHHHHHHHTTSCTTCEEEES
T ss_pred             ccCCccccc----c--CCccEEEEcccc----c---C-----chHHHHHHHHHHcCCCCcEEEEe
Confidence            999653221    1  269999996532    1   1     12345677889999999999875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.25  E-value=3.3e-12  Score=102.78  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=72.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +.         .-.++.++ .+|+.+..     
T Consensus        36 ~~~~~~vLDlG~G~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~-----   98 (227)
T 1ve3_A           36 MKKRGKVLDLACGVGGFSFLLEDYG-----------FEVVGVDISEDMIRKAREYAKSRESNVEFI-VGDARKLS-----   98 (227)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHHHHHTTCCCEEE-ECCTTSCC-----
T ss_pred             cCCCCeEEEEeccCCHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHhcCCCceEE-ECchhcCC-----
Confidence            3458899999999999999888763           3999999997 21         11568888 99987732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         +++++||+|+++....   ..      .......++..+.++|+|||.+++...
T Consensus        99 ---~~~~~~D~v~~~~~~~---~~------~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A           99 ---FEDKTFDYVIFIDSIV---HF------EPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             ---SCTTCEEEEEEESCGG---GC------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---CCCCcEEEEEEcCchH---hC------CHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence               4467899999975410   11      112345788999999999999988654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.25  E-value=1.7e-11  Score=102.40  Aligned_cols=97  Identities=21%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.          . ..++.+. .+|+.+     
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~-----  125 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYD----------VNVVGLTLSKNQANHVQQLVANSENLRSKRVL-LAGWEQ-----  125 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE-ESCGGG-----
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcC----------CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEE-ECChhh-----
Confidence            46789999999999999999997764          4999999996 21          1 1367788 888754     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                           ++ ++||+|++.......+.         .....++.++.++|||||.+++..+.
T Consensus       126 -----~~-~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          126 -----FD-EPVDRIVSIGAFEHFGH---------ERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             -----CC-CCCSEEEEESCGGGTCT---------TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -----CC-CCeeEEEEeCchhhcCh---------HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                 33 78999999654311110         12356788999999999999987644

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.25  E-value=1.1e-11  Score=100.80  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=68.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C-------C------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I-------Y------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~-------~------~~~~~~~~~~~D~~~~~~  124 (229)
                      +++.+|||||||+|.++..++++.         +..+|+|+|+|+  |       .      .++++.+. ++|+.+.. 
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~---------~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~-~~d~~~l~-   91 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAIND---------QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFV-IAAAESLP-   91 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTC---------TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEE-CCBTTBCC-
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEE-EcCHHHhh-
Confidence            578899999999999999998753         567999999994  4       1      23467888 88887631 


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                           ..+ ...+|.|.++++.     ... ..........++.++.++|||||.|++
T Consensus        92 -----~~~-~d~v~~i~~~~~~-----~~~-~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           92 -----FEL-KNIADSISILFPW-----GTL-LEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             -----GGG-TTCEEEEEEESCC-----HHH-HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             -----hhc-cCeEEEEEEeCCC-----cHH-hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence                 111 1457777775531     000 001111123678999999999999988

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.25  E-value=6.9e-12  Score=100.73  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=70.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-----CCeEEecCCCCChh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-----GAVVLSKCDFTQPD  123 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-----~~~~~~~~D~~~~~  123 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.          .+.     ++.++ .+|+....
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~   97 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDK---------SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF-QSSLVYRD   97 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTST---------TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE-ECCSSSCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEE-eCcccccc
Confidence            467899999999999999988764         457999999996 21          011     68888 89986532


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                              ..+++||+|++.....     ..+.    .....+++.+.++|+|||.++...
T Consensus        98 --------~~~~~fD~V~~~~~l~-----~~~~----~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           98 --------KRFSGYDAATVIEVIE-----HLDE----NRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             --------GGGTTCSEEEEESCGG-----GCCH----HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             --------cccCCCCEEEEHHHHH-----hCCH----HHHHHHHHHHHHhhCCCEEEEEcc
Confidence                    3356899999865431     1111    123578899999999999776543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.25  E-value=1.8e-11  Score=98.26  Aligned_cols=98  Identities=14%  Similarity=0.090  Sum_probs=71.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-----CCeEEecCCCCChh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-----GAVVLSKCDFTQPD  123 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-----~~~~~~~~D~~~~~  123 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.          .++     ++.++ .+|+....
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~   97 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDS---------FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLI-QGALTYQD   97 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCT---------TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEE-ECCTTSCC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhC---------CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEE-eCCccccc
Confidence            467899999999999999998864         456999999996 21          111     68888 89876532


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                              ...++||+|++.....     ..+.    .....+++.+.++|+|||.+++..
T Consensus        98 --------~~~~~fD~v~~~~~l~-----~~~~----~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           98 --------KRFHGYDAATVIEVIE-----HLDL----SRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             --------GGGCSCSEEEEESCGG-----GCCH----HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             --------ccCCCcCEEeeHHHHH-----cCCH----HHHHHHHHHHHHHcCCCEEEEEcc
Confidence                    2346899999966431     1111    223578889999999999877654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=1e-11  Score=96.24  Aligned_cols=117  Identities=14%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..++.+|||+|||+|.++..+++ .          ..+|+|+|+++ +          ..++++.++ .+|+.+      
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~------   94 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-R----------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQII-KGRAED------   94 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-T----------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEE-ESCHHH------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-c----------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE-ECCccc------
Confidence            35788999999999999999887 2          36999999996 2          123567788 787543      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~  207 (229)
                         .++++.||+|+++..        .       ....++..+.++  |||.+++.........++.+.++.....++..
T Consensus        95 ---~~~~~~~D~i~~~~~--------~-------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A           95 ---VLDKLEFNKAFIGGT--------K-------NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             ---HGGGCCCSEEEECSC--------S-------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ---cccCCCCcEEEECCc--------c-------cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence               244578999999764        1       123566667777  99999997766566677888888875566666


Q ss_pred             cCCCCC
Q psy1489         208 KPPSSR  213 (229)
Q Consensus       208 kp~~sr  213 (229)
                      .+..++
T Consensus       155 ~~~~~~  160 (183)
T 2yxd_A          155 NVFISY  160 (183)
T ss_dssp             EEEEEE
T ss_pred             Eeeeeh
Confidence            544433

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.25  E-value=6.4e-12  Score=96.87  Aligned_cols=115  Identities=14%  Similarity=0.151  Sum_probs=82.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +.     ..+++.+. .+| .          .+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~v~~~-~~d-~----------~~   71 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA-----------TKLYCIDINVIALKEVKEKFDSVITL-SDP-K----------EI   71 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE-----------EEEEEECSCHHHHHHHHHHCTTSEEE-SSG-G----------GS
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc-----------CeEEEEeCCHHHHHHHHHhCCCcEEE-eCC-C----------CC
Confidence            4678899999999999999988763           3999999997 21     14578888 777 1          15


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC------------ChHHHHHHHHhh
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR------------NRPQLEESITRF  200 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~------------~~~~~~~~l~~~  200 (229)
                      +++.||+|++.......    .+       ...+++++.++|+|||.+++..+...            ...++...++ -
T Consensus        72 ~~~~~D~v~~~~~l~~~----~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-G  139 (170)
T 3i9f_A           72 PDNSVDFILFANSFHDM----DD-------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-N  139 (170)
T ss_dssp             CTTCEEEEEEESCSTTC----SC-------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-T
T ss_pred             CCCceEEEEEccchhcc----cC-------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-C
Confidence            57889999997654211    11       24678889999999999998765432            2456666666 5


Q ss_pred             CCeeEEEc
Q psy1489         201 YSQVKILK  208 (229)
Q Consensus       201 F~~v~~~k  208 (229)
                      |..+.+..
T Consensus       140 f~~~~~~~  147 (170)
T 3i9f_A          140 FVVEKRFN  147 (170)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEccC
Confidence            66555543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.25  E-value=4.5e-12  Score=100.80  Aligned_cols=100  Identities=18%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..++.+|||+|||+|.++..++...          ..+|+|+|+++ +.         .-.++.++ .+|+.+..     
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~----------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~-----   84 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVED----------GYKTYGIEISDLQLKKAENFSRENNFKLNIS-KGDIRKLP-----   84 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHT----------TCEEEEEECCHHHHHHHHHHHHHHTCCCCEE-ECCTTSCC-----
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhC----------CCEEEEEECCHHHHHHHHHHHHhcCCceEEE-ECchhhCC-----
Confidence            4568899999999999865544443          36999999997 21         11357788 88887632     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                         +++++||+|++.....     ...    ......++..+.++|+|||.+++..+.
T Consensus        85 ---~~~~~fD~v~~~~~l~-----~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           85 ---FKDESMSFVYSYGTIF-----HMR----KNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             ---SCTTCEEEEEECSCGG-----GSC----HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ---CCCCceeEEEEcChHH-----hCC----HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence               4567899999965321     111    133567889999999999999987754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.24  E-value=1.8e-11  Score=99.95  Aligned_cols=112  Identities=15%  Similarity=0.282  Sum_probs=80.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++. +          .+|+++|+++ +          ..+ +++.+. .+|+.+..   
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~---  153 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-A----------GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFF-NVDFKDAE---  153 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-S----------SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEE-CSCTTTSC---
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-C----------CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEE-EcChhhcc---
Confidence            457899999999999999999887 4          6999999996 1          122 467788 88887621   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI  206 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~  206 (229)
                           ++++.||+|+++.+.                ...++..+.++|+|||.+++.........++...++..|..+..
T Consensus       154 -----~~~~~~D~v~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~~~~  212 (248)
T 2yvl_A          154 -----VPEGIFHAAFVDVRE----------------PWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEV  212 (248)
T ss_dssp             -----CCTTCBSEEEECSSC----------------GGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTTEEEEEE
T ss_pred             -----cCCCcccEEEECCcC----------------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCcceE
Confidence                 145689999996531                12457778999999999998765443445555555444554443

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.24  E-value=1.2e-11  Score=100.28  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++.+|||+|||+|.++..+++..           .+|+|+|+++ |.     ..+++.++ .+|+.+..        + 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~-----------~~v~~~D~s~~~~~~a~~~~~~~~~~-~~d~~~~~--------~-   97 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF-----------GDTAGLELSEDMLTHARKRLPDATLH-QGDMRDFR--------L-   97 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH-----------SEEEEEESCHHHHHHHHHHCTTCEEE-ECCTTTCC--------C-
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC-----------CcEEEEeCCHHHHHHHHHhCCCCEEE-ECCHHHcc--------c-
Confidence            577899999999999999999875           3899999997 21     23568888 89987632        2 


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ++.||+|+|....       ..+.........++..+.++|+|||.+++..+.
T Consensus        98 ~~~~D~v~~~~~~-------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A           98 GRKFSAVVSMFSS-------VGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             SSCEEEEEECTTG-------GGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CCCCcEEEEcCch-------HhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5689999963311       111111133467889999999999999997654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.24  E-value=1.7e-11  Score=102.49  Aligned_cols=102  Identities=16%  Similarity=0.051  Sum_probs=74.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++.          +..+|+|+|+++ +.          .. .++.++ .+|+.+..   
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~---  127 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA----------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFR-AQDSYGRH---  127 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH----------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEE-ESCTTTSC---
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEE-ECCccccc---
Confidence            467899999999999999998775          345999999996 21          11 246788 89988732   


Q ss_pred             HHHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         127 RLVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       127 ~i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                           + +++.||+|+++....     ..  +........++.++.++|+|||.+++.+..
T Consensus       128 -----~~~~~~fD~v~~~~~l~-----~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          128 -----MDLGKEFDVISSQFSFH-----YA--FSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             -----CCCSSCEEEEEEESCGG-----GG--GSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             -----cCCCCCcCEEEECchhh-----hh--cCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence                 3 467899999976431     00  011234567899999999999999987644

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.24  E-value=9.6e-12  Score=102.44  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=70.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.          .+ .++.++ .+|+.+.     
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~~-----  127 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELP--------ADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR-EGPALQS-----  127 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE-ESCHHHH-----
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH-----
Confidence            4678999999999999999998763        368999999997 21          22 257888 8875441     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +......++||+|++|...       .       .....+..+.++|+|||.+++.
T Consensus       128 l~~~~~~~~fD~V~~d~~~-------~-------~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          128 LESLGECPAFDLIFIDADK-------P-------NNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             HHTCCSCCCCSEEEECSCG-------G-------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHhcCCCCCeEEEEECCch-------H-------HHHHHHHHHHHhcCCCeEEEEe
Confidence            2221123589999997742       1       1235678899999999999875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.24  E-value=5.8e-12  Score=102.03  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=78.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.     ..+++.++ .+|+.+.     +  .+
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~-~~d~~~~-----~--~~  106 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ-A----------ARWAAYDFSPELLKLARANAPHADVY-EWNGKGE-----L--PA  106 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG-S----------SEEEEEESCHHHHHHHHHHCTTSEEE-ECCSCSS-----C--CT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc-C----------CEEEEEECCHHHHHHHHHhCCCceEE-Ecchhhc-----c--CC
Confidence            467899999999999999998876 3          5999999997 21     24578999 9998542     1  13


Q ss_pred             C-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489         133 K-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       133 ~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v  204 (229)
                      + +++||+|+++..+                 ..++..+.++|||||.++ ..........+...+... |..+
T Consensus       107 ~~~~~fD~v~~~~~~-----------------~~~l~~~~~~LkpgG~l~-~~~~~~~~~~~~~~l~~~Gf~~~  162 (226)
T 3m33_A          107 GLGAPFGLIVSRRGP-----------------TSVILRLPELAAPDAHFL-YVGPRLNVPEVPERLAAVGWDIV  162 (226)
T ss_dssp             TCCCCEEEEEEESCC-----------------SGGGGGHHHHEEEEEEEE-EEESSSCCTHHHHHHHHTTCEEE
T ss_pred             cCCCCEEEEEeCCCH-----------------HHHHHHHHHHcCCCcEEE-EeCCcCCHHHHHHHHHHCCCeEE
Confidence            4 6789999996321                 245677999999999998 233334456677777664 4433

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.24  E-value=8.6e-12  Score=102.44  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=73.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC------------------CCCCCeEEecCCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY------------------PIDGAVVLSKCDFT  120 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~------------------~~~~~~~~~~~D~~  120 (229)
                      +++.+|||+|||+|.++..+++..         +...|+|+|+++ +.                  .+.++.++ .+|+.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~-~~D~~  117 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAF---------PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVL-RGNAM  117 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHS---------TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEE-ECCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC---------CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEE-eccHH
Confidence            467899999999999999999875         567999999996 21                  34678898 99987


Q ss_pred             ChhHHHHHHHHhCCCCccEEEeCCCCCCCCC-CcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         121 QPDIQDRLVTILKDDKLDVVLSDMAPNATGM-REMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       121 ~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~-~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +.     +...++.+.+|.|+...+...... +.....    ....++..+.++|+|||.|++.+
T Consensus       118 ~~-----l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~----~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          118 KF-----LPNFFEKGQLSKMFFCFPDPHFKQRKHKARI----ITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             SC-----GGGTSCTTCEEEEEEESCCCC------CSSC----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HH-----HHHhccccccCEEEEECCCcccccchhHHhh----ccHHHHHHHHHHcCCCCEEEEEe
Confidence            62     223355778999987553211000 000000    01367888999999999999854

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.23  E-value=3.2e-12  Score=107.44  Aligned_cols=97  Identities=22%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.          .+ +++.++ .+|+.+..   
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~---  145 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFG----------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVK-YGSFLEIP---  145 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE-ECCTTSCS---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC----------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-EcCcccCC---
Confidence            46789999999999999999998764          5999999997 21          12 468888 89988732   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           +++++||+|++......    ..+       ...++.++.++|||||.+++..+
T Consensus       146 -----~~~~~fD~v~~~~~l~~----~~~-------~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          146 -----CEDNSYDFIWSQDAFLH----SPD-------KLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             -----SCTTCEEEEEEESCGGG----CSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----CCCCCEeEEEecchhhh----cCC-------HHHHHHHHHHHcCCCeEEEEEEe
Confidence                 45678999999654311    111       35788999999999999998753

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.23  E-value=7.7e-11  Score=94.25  Aligned_cols=107  Identities=19%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      .++.+|||+|||+|.++..++              .+|+|+|+++.    ++.+. .+|+.+..        ++++.||+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~--------------~~v~~~D~s~~----~~~~~-~~d~~~~~--------~~~~~fD~  118 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR--------------NPVHCFDLASL----DPRVT-VCDMAQVP--------LEDESVDV  118 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC--------------SCEEEEESSCS----STTEE-ESCTTSCS--------CCTTCEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh--------------ccEEEEeCCCC----CceEE-EeccccCC--------CCCCCEeE
Confidence            567899999999999877652              48999999984    66777 88887732        45678999


Q ss_pred             EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhh-CCeeE
Q psy1489         140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRF-YSQVK  205 (229)
Q Consensus       140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~-F~~v~  205 (229)
                      |++.....     ..+       ...++.++.++|+|||.+++..+..  ....++...++.. |..+.
T Consensus       119 v~~~~~l~-----~~~-------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          119 AVFCLSLM-----GTN-------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             EEEESCCC-----SSC-------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred             EEEehhcc-----ccC-------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence            99966542     112       3467888999999999999866543  3567788888776 65444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.23  E-value=4.4e-12  Score=107.66  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=70.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------CC------CCeEEecCCCCCh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------ID------GAVVLSKCDFTQP  122 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~~------~~~~~~~~D~~~~  122 (229)
                      +++.+|||||||+|..+..++..          ..++|+|+|+|+ |..          ..      .+.+. ..|+...
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~----------~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~-~~d~~~d  115 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG----------EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYI-QETIRSD  115 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEE-ECCTTSS
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchh-hhhcccc
Confidence            45789999999999877665543          236899999997 311          11      14566 6776543


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .....+...+++++||+|+|..+...  ..+.++      ...+++++.++|||||.|++.+..
T Consensus       116 ~~~~~l~~~~~~~~FD~V~~~~~lhy--~~~~~~------~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          116 TFVSSVREVFYFGKFNIIDWQFAIHY--SFHPRH------YATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SHHHHHHTTCCSSCEEEEEEESCGGG--TCSTTT------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhhccccCCCeeEEEECchHHH--hCCHHH------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            22233443456789999998654310  001111      247899999999999999987653

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.23  E-value=2e-11  Score=100.48  Aligned_cols=141  Identities=18%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCC---------------------
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDG---------------------  110 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~---------------------  110 (229)
                      .++.+|||+|||+|.++..++...          ..+|+|+|+++ |.       ....                     
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACES----------FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMK  124 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGT----------EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSC
T ss_pred             cCCCEEEEECCCccHHHHHHhhcc----------cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccc
Confidence            467899999999999998887642          14899999996 21       1111                     


Q ss_pred             -----------C-eEEecCCCCChhHHHHHHHHhCC---CCccEEEeCCCCCCCCCCcccHH-HHHHHHHHHHHHHHHcc
Q psy1489         111 -----------A-VVLSKCDFTQPDIQDRLVTILKD---DKLDVVLSDMAPNATGMREMDHD-LITQLAIAVIRFAVTYS  174 (229)
Q Consensus       111 -----------~-~~~~~~D~~~~~~~~~i~~~~~~---~~~D~V~sd~~~~~~g~~~~d~~-~~~~~~~~~l~~~~~~L  174 (229)
                                 + .++ .+|+.+...       +++   ++||+|++....        .+. ........++..+.++|
T Consensus       125 ~~~~~~~l~~~v~~~~-~~d~~~~~~-------~~~~~~~~fD~v~~~~~l--------~~~~~~~~~~~~~l~~~~~~L  188 (265)
T 2i62_A          125 GPEKEEKLRRAIKQVL-KCDVTQSQP-------LGGVSLPPADCLLSTLCL--------DAACPDLPAYRTALRNLGSLL  188 (265)
T ss_dssp             HHHHHHHHHHHEEEEE-ECCTTSSST-------TTTCCCCCEEEEEEESCH--------HHHCSSHHHHHHHHHHHHTTE
T ss_pred             hHHHHHHhhhhheeEE-EeeeccCCC-------CCccccCCccEEEEhhhh--------hhhcCChHHHHHHHHHHHhhC
Confidence                       5 777 888877421       223   789999996532        000 01234567899999999


Q ss_pred             cCCCEEEEeecCC---------------CChHHHHHHHHhh-CCeeEEEcCCC--CC---CCCceEEEEeccC
Q psy1489         175 KPGADCLIKIWDG---------------RNRPQLEESITRF-YSQVKILKPPS--SR---SHSAELFLLGRGF  226 (229)
Q Consensus       175 kpgG~~v~~~~~~---------------~~~~~~~~~l~~~-F~~v~~~kp~~--sr---~~s~E~Y~v~~~~  226 (229)
                      +|||.|++.....               ....++...+... |..+.+.....  ..   ....-+|++|++.
T Consensus       189 kpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~  261 (265)
T 2i62_A          189 KPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP  261 (265)
T ss_dssp             EEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred             CCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence            9999999865321               1345777888776 76665553221  11   1234567777764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.23  E-value=1.8e-11  Score=103.92  Aligned_cols=142  Identities=18%  Similarity=0.067  Sum_probs=92.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------------~~~~~~~~~~~D~~~~~~  124 (229)
                      +++.+|||||||+|.++..+++..         +..+|+++|+++ +.              ..++++++ .+|+.+   
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~-~~D~~~---  160 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG---------TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR-VGDGLA---  160 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHH---
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC---------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE-ECcHHH---
Confidence            467899999999999999988753         456999999996 10              12457777 787543   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHH-HHHHHHHHHHcccCCCEEEEeecCC----CChHHHHHHHHh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQL-AIAVIRFAVTYSKPGADCLIKIWDG----RNRPQLEESITR  199 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~-~~~~l~~~~~~LkpgG~~v~~~~~~----~~~~~~~~~l~~  199 (229)
                         +.....+++||+|++|..... +    .   ...+ ....++.+.++|+|||.|++.....    .....+...++.
T Consensus       161 ---~~~~~~~~~fDvIi~d~~~~~-~----~---~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  229 (304)
T 3bwc_A          161 ---FVRQTPDNTYDVVIIDTTDPA-G----P---ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRE  229 (304)
T ss_dssp             ---HHHSSCTTCEEEEEEECC-----------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHH
T ss_pred             ---HHHhccCCceeEEEECCCCcc-c----c---chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh
Confidence               111113678999999875310 0    0   0011 1467889999999999999865332    134667788888


Q ss_pred             h-CCeeEEEcC-CCCCCCCceEEEEecc
Q psy1489         200 F-YSQVKILKP-PSSRSHSAELFLLGRG  225 (229)
Q Consensus       200 ~-F~~v~~~kp-~~sr~~s~E~Y~v~~~  225 (229)
                      . |..+.+... ..+-+...-.|++|.+
T Consensus       230 ~GF~~v~~~~~~vP~yp~g~w~f~~as~  257 (304)
T 3bwc_A          230 TGFASVQYALMHVPTYPCGSIGTLVCSK  257 (304)
T ss_dssp             HTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred             CCCCcEEEEEeecccccCcceEEEEEeC
Confidence            8 988877643 2333333345666654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.23  E-value=2.2e-12  Score=105.09  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=70.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..++.+|||+|||+|.++..+++..          ..+|+|+|+++ |.         .-.++.++ .+|+.+      +
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~-~~d~~~------~  120 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAP----------IDEHWIIECNDGVFQRLRDWAPRQTHKVIPL-KGLWED------V  120 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC----------EEEEEEEECCHHHHHHHHHHGGGCSSEEEEE-ESCHHH------H
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcC----------CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEE-ecCHHH------h
Confidence            4578999999999999999986542          24899999997 31         11356777 787654      2


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ...+++++||+|++|....  .....    .......++.++.++|||||.|++..
T Consensus       121 ~~~~~~~~fD~V~~d~~~~--~~~~~----~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          121 APTLPDGHFDGILYDTYPL--SEETW----HTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             GGGSCTTCEEEEEECCCCC--BGGGT----TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             hcccCCCceEEEEECCccc--chhhh----hhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            1235678999999953211  11111    12234567899999999999998653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.23  E-value=6.8e-12  Score=104.01  Aligned_cols=97  Identities=18%  Similarity=0.150  Sum_probs=73.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.          .+ .++.+. .+|+.+..   
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~---  124 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARD----------VRVTGISISRPQVNQANARATAAGLANRVTFS-YADAMDLP---  124 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSC----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECCTTSCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC----------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-ECccccCC---
Confidence            46789999999999999999998743          6999999996 21          12 357888 89987732   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           +++++||+|++......    ..+       ...++.++.++|+|||.+++..+
T Consensus       125 -----~~~~~fD~v~~~~~l~~----~~~-------~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          125 -----FEDASFDAVWALESLHH----MPD-------RGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             -----SCTTCEEEEEEESCTTT----SSC-------HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -----CCCCCccEEEEechhhh----CCC-------HHHHHHHHHHHcCCCeEEEEEEe
Confidence                 45678999998665421    112       24678899999999999998654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.23  E-value=8e-12  Score=105.72  Aligned_cols=101  Identities=19%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||+|||+|.++..++....        +..+|+|+|+++ +.          ... ++.++ .+|+.+..   
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~---  183 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSAC--------PGVQLVGIDYDPEALDGATRLAAGHALAGQITLH-RQDAWKLD---  183 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTC--------TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE-ECCGGGCC---
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC--------CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEE-ECchhcCC---
Confidence            46789999999999999998853222        567999999996 21          111 37788 89877631   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           ++ +.||+|+++....    +..+.    .....++.++.++|+|||.+++..+
T Consensus       184 -----~~-~~fD~v~~~~~~~----~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          184 -----TR-EGYDLLTSNGLNI----YEPDD----ARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             -----CC-SCEEEEECCSSGG----GCCCH----HHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             -----cc-CCeEEEEECChhh----hcCCH----HHHHHHHHHHHHhcCCCeEEEEEec
Confidence                 33 7899999966421    11122    2234578899999999999998663

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.23  E-value=9.8e-12  Score=100.18  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.++        +.++|+++|+++ +          ..+. ++.++ .+|+.+.  ...
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~--~~~  125 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLS--------SGGRVVTLEASEKHADIARSNIERANLNDRVEVR-TGLALDS--LQQ  125 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCC--------SSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ESCHHHH--HHH
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH--HHH
Confidence            4678999999999999999998763        367999999997 2          1233 47888 8886542  111


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.. ...+.||+|++|+..        .      .....+..+.++|+|||.+++.
T Consensus       126 ~~~-~~~~~fD~v~~d~~~--------~------~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          126 IEN-EKYEPFDFIFIDADK--------Q------NNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             HHH-TTCCCCSEEEECSCG--------G------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHh-cCCCCcCEEEEcCCc--------H------HHHHHHHHHHHhcCCCcEEEEe
Confidence            111 112579999998752        1      1236778899999999998875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.22  E-value=2.1e-11  Score=99.00  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C---CCCCeEEecCCCCChhHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P---IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~---~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.+|||+|||+|.++..+++.           ..+|+|+|+++ +.        .   ..++.++ .+|+.+.       
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-------  127 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASP-----------ERFVVGLDISESALAKANETYGSSPKAEYFSFV-KEDVFTW-------  127 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBT-----------TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEE-CCCTTTC-------
T ss_pred             CCCEEEeCCCCCHHHHHHHhC-----------CCeEEEEECCHHHHHHHHHHhhccCCCcceEEE-ECchhcC-------
Confidence            459999999999999988653           36899999997 21        1   1247888 9998873       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----------CChHHHHHHHHh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----------RNRPQLEESITR  199 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----------~~~~~~~~~l~~  199 (229)
                        .++..||+|++.......  ..       +....++..+.++|+|||.+++..+..          ....++...+..
T Consensus       128 --~~~~~fD~v~~~~~l~~~--~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  196 (235)
T 3lcc_A          128 --RPTELFDLIFDYVFFCAI--EP-------EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVP  196 (235)
T ss_dssp             --CCSSCEEEEEEESSTTTS--CG-------GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGG
T ss_pred             --CCCCCeeEEEEChhhhcC--CH-------HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHH
Confidence              235689999996654211  10       123567889999999999999866542          135677788877


Q ss_pred             h-CCeeEEEcCCCCC--CCCceEEEEeccC
Q psy1489         200 F-YSQVKILKPPSSR--SHSAELFLLGRGF  226 (229)
Q Consensus       200 ~-F~~v~~~kp~~sr--~~s~E~Y~v~~~~  226 (229)
                      . |..+.+.....+-  ....|.+...++.
T Consensus       197 ~Gf~~~~~~~~~~~~~~~~g~e~~~~~~~~  226 (235)
T 3lcc_A          197 IGFKAVSVEENPHAIPTRKGKEKLGRWKKI  226 (235)
T ss_dssp             GTEEEEEEEECTTCCTTTTTSCEEEEEEES
T ss_pred             cCCeEEEEEecCCccccccCHHHHhhhhhc
Confidence            6 7766655432222  2345666665543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.22  E-value=1.3e-11  Score=104.69  Aligned_cols=114  Identities=15%  Similarity=0.030  Sum_probs=76.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------------CCCCCeEEecCCCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------------PIDGAVVLSKCDFTQ  121 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------------~~~~~~~~~~~D~~~  121 (229)
                      +++.+|||+|||+|.++..+++.          +..+|+|+|+++ |.                 ...++.++ .+|+.+
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~D~~~  101 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG----------RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI-TADSSK  101 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEE-ECCTTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEE-Eecccc
Confidence            46789999999999999998874          346999999996 21                 12257788 899877


Q ss_pred             hhHHHHHHHHh--CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489         122 PDIQDRLVTIL--KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT  198 (229)
Q Consensus       122 ~~~~~~i~~~~--~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~  198 (229)
                      ....    ..+  ++++||+|++....     +..  +........++.++.++|+|||.|++.++..   ..+.+.+.
T Consensus       102 ~~~~----~~~~~~~~~fD~V~~~~~l-----~~~--~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~l~~~~~  166 (313)
T 3bgv_A          102 ELLI----DKFRDPQMCFDICSCQFVC-----HYS--FESYEQADMMLRNACERLSPGGYFIGTTPNS---FELIRRLE  166 (313)
T ss_dssp             SCST----TTCSSTTCCEEEEEEETCG-----GGG--GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH---HHHHHHHT
T ss_pred             cchh----hhcccCCCCEEEEEEecch-----hhc--cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh---HHHHHHHH
Confidence            3200    012  23589999996643     111  0112334578999999999999999877643   34444443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.22  E-value=3.8e-12  Score=101.53  Aligned_cols=97  Identities=19%  Similarity=0.110  Sum_probs=67.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC--CCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI--DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~--~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++.+|||+|||+|.++..++.+.          ..+|+|+|+++ |          ..+  ++++++ .+|+.+.     
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~-~~d~~~~-----  116 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ----------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI-NQSSLDF-----  116 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT----------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEE-CSCHHHH-----
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc----------CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEE-ECCHHHH-----
Confidence            57899999999999999877652          35899999996 2          123  467888 8875431     


Q ss_pred             HHHHhCCCC-ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDK-LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~-~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~~  186 (229)
                       ...+.++. ||+|++|.+..      .+.      ...++..+  .++|+|||.+++....
T Consensus       117 -~~~~~~~~~fD~I~~~~~~~------~~~------~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          117 -LKQPQNQPHFDVVFLDPPFH------FNL------AEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             -TTSCCSSCCEEEEEECCCSS------SCH------HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             -HHhhccCCCCCEEEECCCCC------Ccc------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence             11122467 99999987631      111      23445555  6789999999986644

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.22  E-value=1e-11  Score=102.84  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=74.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.     ..+++.+. .+|+.+..        ++
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~d~~~~~--------~~  145 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL---------PEITTFGLDVSKVAIKAAAKRYPQVTFC-VASSHRLP--------FS  145 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC---------TTSEEEEEESCHHHHHHHHHHCTTSEEE-ECCTTSCS--------BC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHhCCCcEEE-EcchhhCC--------CC
Confidence            578899999999999999998875         346999999997 21     23567888 88887632        45


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHH
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL  193 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~  193 (229)
                      +++||+|++...+                  ..+.++.++|+|||.+++.........++
T Consensus       146 ~~~fD~v~~~~~~------------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~  187 (269)
T 1p91_A          146 DTSMDAIIRIYAP------------------CKAEELARVVKPGGWVITATPGPRHLMEL  187 (269)
T ss_dssp             TTCEEEEEEESCC------------------CCHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             CCceeEEEEeCCh------------------hhHHHHHHhcCCCcEEEEEEcCHHHHHHH
Confidence            6789999986542                  13677899999999999977665554443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.22  E-value=1.6e-11  Score=102.58  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.          .+ +++.++ .+|+.+..     
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-----  130 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER-G----------HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFI-HCAAQDVA-----  130 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEE-ESCGGGTG-----
T ss_pred             CCCEEEEeCCcchHHHHHHHHC-C----------CEEEEEECCHHHHHHHHHHHHhcCCCcceEEE-EcCHHHhh-----
Confidence            4689999999999999998876 3          5999999997 21          12 467788 89887632     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                        .+.+++||+|++......    ..+       ...++.++.++|+|||.+++..+
T Consensus       131 --~~~~~~fD~v~~~~~l~~----~~~-------~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          131 --SHLETPVDLILFHAVLEW----VAD-------PRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             --GGCSSCEEEEEEESCGGG----CSC-------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --hhcCCCceEEEECchhhc----ccC-------HHHHHHHHHHHcCCCeEEEEEEe
Confidence              135689999999764311    111       24688999999999999998664

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.21  E-value=2.4e-11  Score=104.70  Aligned_cols=119  Identities=19%  Similarity=0.166  Sum_probs=83.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+|+|+++ +.         .-....++ .+|+.+        
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~---------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~~--------  256 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHS---------PKIRLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVFS--------  256 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHC---------TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTT--------
T ss_pred             CCCCeEEEecCccCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEE-Eccccc--------
Confidence            356799999999999999999874         556999999997 21         11125667 788765        


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~  207 (229)
                        ..+++||+|+++.+... +.     .........++..+.++|+|||.+++.........   ..+...|..+...
T Consensus       257 --~~~~~fD~Iv~~~~~~~-g~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~l~~~f~~~~~~  323 (343)
T 2pjd_A          257 --EVKGRFDMIISNPPFHD-GM-----QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP---DVLDETFGFHEVI  323 (343)
T ss_dssp             --TCCSCEEEEEECCCCCS-SS-----HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHH---HHHHHHHSCCEEE
T ss_pred             --cccCCeeEEEECCCccc-Cc-----cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcH---HHHHHhcCceEEE
Confidence              22568999999876421 11     12234456889999999999999998765544333   4455556666544

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.21  E-value=6.2e-11  Score=99.18  Aligned_cols=108  Identities=15%  Similarity=0.140  Sum_probs=76.0

Q ss_pred             CCCeeEeecCCC---CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHH---
Q psy1489          61 PGLKVLDCGAAP---GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQ---  125 (229)
Q Consensus        61 ~g~~VLDlGcGp---G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~---  125 (229)
                      ...+|||||||+   |.++..+.+..         +..+|+++|+++ |.        ...++.++ .+|+.+....   
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~---------p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~-~~D~~~~~~~~~~  146 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVN---------PDARVVYVDIDPMVLTHGRALLAKDPNTAVF-TADVRDPEYILNH  146 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHC---------TTCEEEEEESSHHHHHHHHHHHTTCTTEEEE-ECCTTCHHHHHHS
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhC---------CCCEEEEEECChHHHHHHHHhcCCCCCeEEE-EeeCCCchhhhcc
Confidence            347999999999   99887766553         568999999997 31        22568899 9999986422   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ..+.+.++...||+|++.....     ..+.    +....+++++.++|+|||.|++..+..
T Consensus       147 ~~~~~~~d~~~~d~v~~~~vlh-----~~~d----~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          147 PDVRRMIDFSRPAAIMLVGMLH-----YLSP----DVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHHHHCCTTSCCEEEETTTGG-----GSCT----TTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             chhhccCCCCCCEEEEEechhh-----hCCc----HHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            1111335446899999976431     1111    113578899999999999999887654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.21  E-value=2.3e-11  Score=102.44  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC-----CCCeEEecCCCCChhHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI-----DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~-----~~~~~~~~~D~~~~~~~~  126 (229)
                      ++.+|||||||+|.++..+++. +          .+|+|+|+++ +.        ..     .++.++ ++|+.+..   
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~-~~d~~~~~---  146 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL-G----------WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLV-QGDMSAFA---  146 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT-T----------CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEE-ECBTTBCC---
T ss_pred             CCCcEEEEeccCCHHHHHHHHc-C----------CeEEEEECCHHHHHHHHHHHhhcccccccceEEE-eCchhcCC---
Confidence            3459999999999999998875 2          5899999997 21        11     457888 99988732   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                           + ++.||+|++....    .+..+.    +....++..+.++|+|||.|++.++.
T Consensus       147 -----~-~~~fD~v~~~~~~----~~~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          147 -----L-DKRFGTVVISSGS----INELDE----ADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             -----C-SCCEEEEEECHHH----HTTSCH----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----c-CCCcCEEEECCcc----cccCCH----HHHHHHHHHHHHHcCCCcEEEEEeec
Confidence                 2 5789999973210    011111    23467889999999999999987654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.20  E-value=3.9e-10  Score=99.18  Aligned_cols=123  Identities=19%  Similarity=0.103  Sum_probs=83.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-CCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-IDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      .++.+|||+|||+|.++..++++.+        +..+++|+|+++ +.. ..++.++ ++|+.+.         ...+.|
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~--------~~~~i~gvDi~~~~~~~a~~~~~~-~~D~~~~---------~~~~~f   99 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHG--------TAYRFVGVEIDPKALDLPPWAEGI-LADFLLW---------EPGEAF   99 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHC--------SCSEEEEEESCTTTCCCCTTEEEE-ESCGGGC---------CCSSCE
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhC--------CCCeEEEEECCHHHHHhCCCCcEE-eCChhhc---------CccCCC
Confidence            3567999999999999999998864        346999999998 222 2467888 8887652         234689


Q ss_pred             cEEEeCCCCCCCCCC------cccHHHH-H-----------HHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHH
Q psy1489         138 DVVLSDMAPNATGMR------EMDHDLI-T-----------QLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEE  195 (229)
Q Consensus       138 D~V~sd~~~~~~g~~------~~d~~~~-~-----------~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~  195 (229)
                      |+|++|++....+..      ..+.... .           .+....+..+.++|+|||.+++.+..    ......+.+
T Consensus       100 D~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~  179 (421)
T 2ih2_A          100 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLRE  179 (421)
T ss_dssp             EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHH
T ss_pred             CEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHH
Confidence            999999875332220      0111111 0           02236688899999999999886643    234566776


Q ss_pred             HHHhh
Q psy1489         196 SITRF  200 (229)
Q Consensus       196 ~l~~~  200 (229)
                      .+...
T Consensus       180 ~l~~~  184 (421)
T 2ih2_A          180 FLARE  184 (421)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.20  E-value=4.5e-11  Score=101.49  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=73.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..+          .+|+|+|+++ +.          .+ +++.+. .+|+.+     
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~-----  151 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFD----------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVL-LQGWED-----  151 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE-ESCGGG-----
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-ECChHH-----
Confidence            45789999999999999999998764          5999999996 21          12 347788 888755     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                           ++ +.||+|++.......+.         .....++.++.++|+|||.+++..+...
T Consensus       152 -----~~-~~fD~v~~~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          152 -----FA-EPVDRIVSIEAFEHFGH---------ENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             -----CC-CCCSEEEEESCGGGTCG---------GGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             -----CC-CCcCEEEEeChHHhcCH---------HHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence                 33 68999999654311110         1245788899999999999998776543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.20  E-value=3.2e-11  Score=104.31  Aligned_cols=96  Identities=19%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCC-CCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PID-GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~-~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++.          +..+|+|+|+++|.          .+. .+.++ .+|+.+..     
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~----------g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~-~~d~~~~~-----  128 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA----------GARKVIGIECSSISDYAVKIVKANKLDHVVTII-KGKVEEVE-----  128 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT----------TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEE-ESCTTTCC-----
T ss_pred             CCCCEEEEEeccchHHHHHHHHC----------CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEE-ECcHHHcc-----
Confidence            46889999999999999998876          34699999999731          122 37888 99988732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                         +++++||+|+++...... ...       .....++..+.++|||||.++.
T Consensus       129 ---~~~~~fD~Iis~~~~~~l-~~~-------~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          129 ---LPVEKVDIIISEWMGYCL-FYE-------SMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ---CSSSCEEEEEECCCBBTB-TBT-------CCHHHHHHHHHHHEEEEEEEES
T ss_pred             ---CCCCceEEEEEccccccc-cCc-------hhHHHHHHHHHHhCCCCCEEcc
Confidence               456899999997532110 011       1234677888999999999873

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.19  E-value=1.1e-11  Score=101.97  Aligned_cols=94  Identities=16%  Similarity=0.068  Sum_probs=71.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++ |.         ..+++.+. .+|+.+..     
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~-----   99 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR-G----------YRYIALDADAAMLEVFRQKIAGVDRKVQVV-QADARAIP-----   99 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT-T----------CEEEEEESCHHHHHHHHHHTTTSCTTEEEE-ESCTTSCC-----
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC-C----------CEEEEEECCHHHHHHHHHHhhccCCceEEE-EcccccCC-----
Confidence            467899999999999999998875 2          5899999996 21         13578888 89987632     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         +++++||+|++.....     ..+      ....++.++.++|+|||.+++.
T Consensus       100 ---~~~~~fD~v~~~~~l~-----~~~------~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          100 ---LPDESVHGVIVVHLWH-----LVP------DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ---SCTTCEEEEEEESCGG-----GCT------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---CCCCCeeEEEECCchh-----hcC------CHHHHHHHHHHHCCCCcEEEEE
Confidence               4567899999965431     111      1346788899999999999886

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.19  E-value=1.2e-11  Score=103.70  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..+++..+        +..+|+|+|+++ +.        .. .++.+. .+|+.+..     
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~-~~d~~~~~-----   85 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLP--------EGSKYTGIDSGETLLAEARELFRLLPYDSEFL-EGDATEIE-----   85 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSC--------TTCEEEEEESCHHHHHHHHHHHHSSSSEEEEE-ESCTTTCC-----
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEE-EcchhhcC-----
Confidence            45789999999999999999988762        247999999997 21        11 268888 99988732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         + +++||+|++......    ..+       ...++.++.++|+|||.+++...
T Consensus        86 ---~-~~~fD~v~~~~~l~~----~~~-------~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           86 ---L-NDKYDIAICHAFLLH----MTT-------PETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             ---C-SSCEEEEEEESCGGG----CSS-------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ---c-CCCeeEEEECChhhc----CCC-------HHHHHHHHHHHcCCCCEEEEEec
Confidence               2 468999999764311    111       24788899999999999997654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.19  E-value=1.1e-11  Score=100.00  Aligned_cols=96  Identities=11%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.++        +.++|+++|+++ +          ..+. .++++ .+|+.+.     
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  128 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALP--------KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR-LSPAKDT-----  128 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCC--------TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ESCHHHH-----
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE-eCCHHHH-----
Confidence            4678999999999999999998763        368999999996 2          1222 47888 8875431     


Q ss_pred             HHHHhCC---CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKD---DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~---~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +......   ++||+|++|...              ......+..+.++|+|||.+++.
T Consensus       129 ~~~~~~~~~~~~fD~v~~~~~~--------------~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          129 LAELIHAGQAWQYDLIYIDADK--------------ANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             HHHHHTTTCTTCEEEEEECSCG--------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHhhhccCCCCccEEEECCCH--------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence            2221111   689999997642              11235778899999999999885

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.19  E-value=6.7e-11  Score=101.93  Aligned_cols=96  Identities=24%  Similarity=0.269  Sum_probs=70.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++.          +..+|+|+|+++|.          .. +++.++ .+|+.+..    
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~----------g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~----  126 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA----------GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLI-KGKIEEVH----  126 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEE-ESCTTTSC----
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc----------CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEE-EeeHHHhc----
Confidence            356889999999999999998875          23599999999741          12 467888 99988732    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                          +++++||+|+++..+..  ....      .....++..+.++|||||.++
T Consensus       127 ----~~~~~~D~Ivs~~~~~~--l~~~------~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          127 ----LPVEKVDVIISEWMGYF--LLFE------SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ----CSCSCEEEEEECCCBTT--BTTT------CHHHHHHHHHHHHEEEEEEEE
T ss_pred             ----CCCCcEEEEEEcCchhh--ccCH------HHHHHHHHHHHhhcCCCcEEE
Confidence                45578999999763211  1111      123467888899999999987

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.19  E-value=1.1e-10  Score=96.75  Aligned_cols=102  Identities=20%  Similarity=0.234  Sum_probs=70.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-------C----------CC-CCCeEEecCC-C
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-------Y----------PI-DGAVVLSKCD-F  119 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-------~----------~~-~~~~~~~~~D-~  119 (229)
                      +.++.+|||+|||+|.++..++++.+        +.++|+|+|+++.       .          .+ +++.++ .+| +
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g--------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~  111 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVG--------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH-FNTNL  111 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE-CSCCT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE-ECChh
Confidence            46789999999999999999999875        5579999999972       1          11 357788 887 3


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ....      ..+++++||+|++......    ..+.       ..++..+..+++|||.+++..+.
T Consensus       112 ~~~~------~~~~~~~fD~v~~~~~l~~----~~~~-------~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          112 SDDL------GPIADQHFDRVVLAHSLWY----FASA-------NALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             TTCC------GGGTTCCCSEEEEESCGGG----SSCH-------HHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             hhcc------CCCCCCCEEEEEEccchhh----CCCH-------HHHHHHHHHHhCCCCEEEEEEec
Confidence            3211      1145678999999764311    1111       23455566677779999986544

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.18  E-value=6.3e-11  Score=104.03  Aligned_cols=120  Identities=19%  Similarity=0.158  Sum_probs=78.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|||+|+++..++.. +          ..|+|+|+++ +.          .+. ..+. ++|+.+.     
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~-g----------a~V~avDis~~al~~a~~n~~~ng~~-~~~~-~~D~~~~-----  273 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARK-G----------AYALAVDKDLEALGVLDQAALRLGLR-VDIR-HGEALPT-----  273 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHHTCC-CEEE-ESCHHHH-----
T ss_pred             hcCCCeEEEcccchhHHHHHHHHc-C----------CeEEEEECCHHHHHHHHHHHHHhCCC-CcEE-EccHHHH-----
Confidence            456999999999999999999875 3          3599999997 21          112 2455 6665431     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhh
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRF  200 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~  200 (229)
                      + ..+.+. ||+|++|++....  ...+..........++..+.++|+|||.+++..... ...+.+.+.+...
T Consensus       274 l-~~~~~~-fD~Ii~dpP~f~~--~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a  343 (393)
T 4dmg_A          274 L-RGLEGP-FHHVLLDPPTLVK--RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRA  343 (393)
T ss_dssp             H-HTCCCC-EEEEEECCCCCCS--SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             H-HHhcCC-CCEEEECCCcCCC--CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            2 223344 9999999753221  122344444556688999999999999998655443 3445555555443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.18  E-value=3.5e-10  Score=92.95  Aligned_cols=148  Identities=11%  Similarity=0.006  Sum_probs=90.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++.+|||+|||+|.++..++.+.         +..+|+|+|+++ |          ..+. +++++ ++|+.+.     +
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----~  129 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL---------NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV-KVPQKTL-----L  129 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH---------HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECCTTCS-----S
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEE-Ecchhhh-----h
Confidence            57899999999999999999876         347999999997 2          1233 37888 8886651     0


Q ss_pred             HHHhC---CCCccEEEeCCCCCCCCC--Ccc--------c---HH-----------HHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         129 VTILK---DDKLDVVLSDMAPNATGM--REM--------D---HD-----------LITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       129 ~~~~~---~~~~D~V~sd~~~~~~g~--~~~--------d---~~-----------~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                      ...++   +++||+|++|++....+.  ...        +   ..           ..+......+..+.++|+++|.+.
T Consensus       130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~  209 (254)
T 2h00_A          130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS  209 (254)
T ss_dssp             TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred             hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEE
Confidence            01133   258999999976432220  000        0   00           111223345555667788888877


Q ss_pred             EeecCCCChHHHHHHHHhh-CCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         182 IKIWDGRNRPQLEESITRF-YSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      +.+-......++.+.++.. |..+++.....   +..-.++|+-.|
T Consensus       210 ~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~---g~~~~~~~~w~~  252 (254)
T 2h00_A          210 CMLGKKCSLAPLKEELRIQGVPKVTYTEFCQ---GRTMRWALAWSF  252 (254)
T ss_dssp             EEESSTTSHHHHHHHHHHTTCSEEEEEEEEE---TTEEEEEEEEES
T ss_pred             ECCCChhHHHHHHHHHHHcCCCceEEEEEec---CCceEEEEEeec
Confidence            6554444456777778776 88877664322   234444555443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.18  E-value=4.5e-11  Score=92.74  Aligned_cols=99  Identities=17%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.          +..+|+|+|+++ +.          .+ .++.++ .+|+.+.     
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~-----   93 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR----------GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL-KMEAERA-----   93 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT----------TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE-CSCHHHH-----
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE-ECcHHHh-----
Confidence            46789999999999999998875          246999999996 21          12 247787 7876541     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH--HcccCCCEEEEeecCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAV--TYSKPGADCLIKIWDGR  188 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~--~~LkpgG~~v~~~~~~~  188 (229)
                      + . ..++.||+|++|.+.         +..   .....+..+.  ++|+|||.+++......
T Consensus        94 ~-~-~~~~~fD~i~~~~~~---------~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           94 I-D-CLTGRFDLVFLDPPY---------AKE---TIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             H-H-HBCSCEEEEEECCSS---------HHH---HHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             H-H-hhcCCCCEEEECCCC---------Ccc---hHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            1 1 124579999998642         111   1233444444  99999999998775544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.18  E-value=1.4e-11  Score=100.30  Aligned_cols=94  Identities=13%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++..         +.++|+++|+++ +          ..+ +++.++ .+|+.+.     
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  134 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASIS---------DDIHVTTIERNETMIQYAKQNLATYHFENQVRII-EGNALEQ-----  134 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTC---------TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE-ESCGGGC-----
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECCHHHH-----
Confidence            467899999999999999999843         568999999996 2          122 368888 8988662     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +...+ +++||+|++|....        .      ....+..+.++|+|||.+++.
T Consensus       135 ~~~~~-~~~fD~V~~~~~~~--------~------~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          135 FENVN-DKVYDMIFIDAAKA--------Q------SKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             HHHHT-TSCEEEEEEETTSS--------S------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHhhc-cCCccEEEEcCcHH--------H------HHHHHHHHHHhcCCCeEEEEe
Confidence            11012 57899999986431        1      235778899999999999873

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.18  E-value=3.8e-11  Score=98.30  Aligned_cols=96  Identities=16%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++.+|||+|||+|.++..+++. +          .+|+|+|+++ |.         .-.++.++ ++|+.+..      
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~-~~d~~~~~------  101 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER-G----------YEVVGLDLHEEMLRVARRKAKERNLKIEFL-QGDVLEIA------  101 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHTTCCCEEE-ESCGGGCC------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHHhcCCceEEE-ECChhhcc------
Confidence            56789999999999999998875 3          5899999997 21         01257888 88877621      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        + +++||+|++....    ....+    ......++..+.++|+|||.+++.+
T Consensus       102 --~-~~~fD~v~~~~~~----~~~~~----~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          102 --F-KNEFDAVTMFFST----IMYFD----EEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             --C-CSCEEEEEECSSG----GGGSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --c-CCCccEEEEcCCc----hhcCC----HHHHHHHHHHHHHHcCCCeEEEEec
Confidence              2 3579999985321    01111    1235678899999999999998753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.17  E-value=3.1e-11  Score=100.93  Aligned_cols=93  Identities=19%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..+++. +          .+|+|+|+++ +.          .+ ++.++ .+|+.+..      
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-g----------~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~-~~d~~~~~------  180 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-G----------YDVTSWDHNENSIAFLNETKEKENL-NISTA-LYDINAAN------  180 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHTTC-CEEEE-ECCGGGCC------
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHHHcCC-ceEEE-Eecccccc------
Confidence            6789999999999999998876 3          5999999997 21          12 67888 88877631      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        . ++.||+|+++.....     .+.    .....++..+.++|+|||.+++..
T Consensus       181 --~-~~~fD~i~~~~~~~~-----~~~----~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          181 --I-QENYDFIVSTVVFMF-----LNR----ERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             --C-CSCEEEEEECSSGGG-----SCG----GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --c-cCCccEEEEccchhh-----CCH----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence              2 678999999764311     111    223468889999999999977654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.17  E-value=4.4e-11  Score=102.78  Aligned_cols=123  Identities=16%  Similarity=0.042  Sum_probs=79.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC--CCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID--GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~--~~~~~~~~D~~~~~~~~  126 (229)
                      .++.+|||+|||+|.++..++.. +          .+|+|||+++ +          ..+.  ++.++ ++|+.+.    
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~-g----------a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i-~~D~~~~----  215 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA-G----------AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWI-CEDAMKF----  215 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-T----------CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEE-CSCHHHH----
T ss_pred             CCCCcEEEcccccCHHHHHHHHc-C----------CEEEEEECCHHHHHHHHHHHHHcCCCccceEEE-ECcHHHH----
Confidence            36789999999999999999874 2          3999999997 2          1233  37888 8886552    


Q ss_pred             HHHHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC--ChHHHHHHHHhh
Q psy1489         127 RLVTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR--NRPQLEESITRF  200 (229)
Q Consensus       127 ~i~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~--~~~~~~~~l~~~  200 (229)
                       +... ..+++||+|++|++....+.. .+.+........++..+.++|+|||.|++......  ....+.+.++..
T Consensus       216 -l~~~~~~~~~fD~Ii~dPP~~~~~~~-~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a  290 (332)
T 2igt_A          216 -IQREERRGSTYDIILTDPPKFGRGTH-GEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRET  290 (332)
T ss_dssp             -HHHHHHHTCCBSEEEECCCSEEECTT-CCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             -HHHHHhcCCCceEEEECCccccCCch-HHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence             1111 114689999999863111100 00011223445788889999999999776554332  345566666644

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.17  E-value=3.5e-11  Score=95.25  Aligned_cols=96  Identities=16%  Similarity=0.123  Sum_probs=70.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C----CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P----IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~----~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++++ +|||+|||+|.++..+++. +          .+|+|+|+++ +.     .    -.++.+. .+|+.+..     
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~-~----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~-----   89 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL-G----------YEVTAVDQSSVGLAKAKQLAQEKGVKITTV-QSNLADFD-----   89 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT-T----------CEEEEECSSHHHHHHHHHHHHHHTCCEEEE-CCBTTTBS-----
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC-C----------CeEEEEECCHHHHHHHHHHHHhcCCceEEE-EcChhhcC-----
Confidence            4567 9999999999999888865 2          5999999997 21     0    1267788 88887732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                         ++++.||+|++....      . .    ......++..+.++|+|||.+++..+.
T Consensus        90 ---~~~~~fD~v~~~~~~------~-~----~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           90 ---IVADAWEGIVSIFCH------L-P----SSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             ---CCTTTCSEEEEECCC------C-C----HHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             ---CCcCCccEEEEEhhc------C-C----HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence               446789999995321      1 1    123457889999999999999987643

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.17  E-value=5.2e-11  Score=100.16  Aligned_cols=137  Identities=19%  Similarity=0.268  Sum_probs=84.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++.+|||+|||+|.++..++.. +         ..+|+|+|+++ +          ..+. ++.++ ++|+.+.      
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~---------~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~-~~D~~~~------  185 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-S---------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR-KGEFLEP------  185 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-S---------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE-ESSTTGG------
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-C---------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE-ECcchhh------
Confidence            5679999999999999999987 3         46999999996 2          1233 38888 9998873      


Q ss_pred             HHHhCCCCc---cEEEeCCCCCCCCC---Cc--ccHHHHH---HHHHHHHHHHH-HcccCCCEEEEeecCCCChHHHHHH
Q psy1489         129 VTILKDDKL---DVVLSDMAPNATGM---RE--MDHDLIT---QLAIAVIRFAV-TYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       129 ~~~~~~~~~---D~V~sd~~~~~~g~---~~--~d~~~~~---~~~~~~l~~~~-~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                         ++ ++|   |+|++|++....+.   .+  .+....+   ......++.+. +.|+|||.+++.+.. .....+.+.
T Consensus       186 ---~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~-~q~~~v~~~  260 (284)
T 1nv8_A          186 ---FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKI  260 (284)
T ss_dssp             ---GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTT
T ss_pred             ---cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc-hHHHHHHHH
Confidence               21 368   99999865321110   00  1110000   00115678888 999999999986543 333344443


Q ss_pred             HHhhCCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       197 l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      +..    ..+.++-+.+    +.++++...+
T Consensus       261 ~~~----~~~~~D~~g~----~R~~~~~~k~  283 (284)
T 1nv8_A          261 VSD----TVFLKDSAGK----YRFLLLNRRS  283 (284)
T ss_dssp             STT----CEEEECTTSS----EEEEEEECCC
T ss_pred             HHh----CCeecccCCC----ceEEEEEEcc
Confidence            333    2666664333    4555555443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.16  E-value=8.5e-11  Score=98.51  Aligned_cols=92  Identities=20%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      +++|.+|||+|||+|.++..+|.+          +.++|+|+|++|.           ..+. .+.++ ++|..+.    
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~----------g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~-~~D~~~~----  187 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY----------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY-NMDNRDF----  187 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH----------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE-CSCTTTC----
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh----------cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-eCcHHHh----
Confidence            578999999999999999999876          3469999999972           1233 47788 8998762    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           ...+.||.|+++.++..               ...+..+.++|++||.+.+..+
T Consensus       188 -----~~~~~~D~Vi~~~p~~~---------------~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          188 -----PGENIADRILMGYVVRT---------------HEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             -----CCCSCEEEEEECCCSSG---------------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -----ccccCCCEEEECCCCcH---------------HHHHHHHHHHcCCCCEEEEEee
Confidence                 34678999999876521               1345668889999999876554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.15  E-value=1.4e-11  Score=99.47  Aligned_cols=94  Identities=19%  Similarity=0.277  Sum_probs=70.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C-------CCCCeEEecCCCCCh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P-------IDGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~-------~~~~~~~~~~D~~~~  122 (229)
                      ++++.+|||+|||+|.++..+++..+        +.++|+|+|+++ +.        .       ..++.++ .+|+.+.
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~  145 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVG--------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV-VGDGRMG  145 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHC--------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE-ESCGGGC
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhC--------CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEE-ECCcccC
Confidence            56789999999999999999998875        557999999996 21        0       2467788 8887642


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .        ..+..||+|+++....                 .++..+.++|+|||.+++.+..
T Consensus       146 ~--------~~~~~fD~i~~~~~~~-----------------~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          146 Y--------AEEAPYDAIHVGAAAP-----------------VVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             C--------GGGCCEEEEEECSBBS-----------------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             c--------ccCCCcCEEEECCchH-----------------HHHHHHHHhcCCCcEEEEEEec
Confidence            1        2246799999977531                 1234578999999999987654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.14  E-value=1.2e-10  Score=101.74  Aligned_cols=118  Identities=17%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..++.. .          .+|+|+|+++ +          ..+.++.++ .+|+.+.     +.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~----------~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~-~~d~~~~-----~~  271 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-F----------REVVAVDSSAEALRRAEENARLNGLGNVRVL-EANAFDL-----LR  271 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-E----------EEEEEEESCHHHHHHHHHHHHHTTCTTEEEE-ESCHHHH-----HH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-C----------CEEEEEECCHHHHHHHHHHHHHcCCCCceEE-ECCHHHH-----HH
Confidence            6789999999999999999987 3          5899999996 1          124457888 8886552     11


Q ss_pred             HH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-ChHHHHHHH
Q psy1489         130 TI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-NRPQLEESI  197 (229)
Q Consensus       130 ~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~~~~~~~~l  197 (229)
                      .. -.+.+||+|++|++....  ...+..........++..+.++|+|||.+++...... ....+...+
T Consensus       272 ~~~~~~~~fD~Ii~dpP~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i  339 (382)
T 1wxx_A          272 RLEKEGERFDLVVLDPPAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV  339 (382)
T ss_dssp             HHHHTTCCEEEEEECCCCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             HHHhcCCCeeEEEECCCCCCC--ChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHH
Confidence            11 125689999999764221  1123344445667788999999999999998765543 333344433

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.14  E-value=2.3e-11  Score=97.04  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++.+|||+|||+|.++..+    +         ..+|+|+|+++ +.     ..+++.++ .+|+.+..        ++
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l----~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~d~~~~~--------~~   92 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL----P---------YPQKVGVEPSEAMLAVGRRRAPEATWV-RAWGEALP--------FP   92 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC----C---------CSEEEEECCCHHHHHHHHHHCTTSEEE-CCCTTSCC--------SC
T ss_pred             CCCCeEEEECCCCCHhHHhC----C---------CCeEEEEeCCHHHHHHHHHhCCCcEEE-EcccccCC--------CC
Confidence            37889999999999988776    3         12899999997 21     12578888 89887632        45


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      +++||+|++......     .+      ....++.++.++|+|||.+++..+...
T Consensus        93 ~~~fD~v~~~~~l~~-----~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A           93 GESFDVVLLFTTLEF-----VE------DVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             SSCEEEEEEESCTTT-----CS------CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCcEEEEEEcChhhh-----cC------CHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            678999999764321     11      134678899999999999999876544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.14  E-value=1.6e-10  Score=101.12  Aligned_cols=123  Identities=15%  Similarity=0.062  Sum_probs=81.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC--CCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID--GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~--~~~~~~~~D~~~~~~~~  126 (229)
                      .++.+|||+|||+|.++..++..          ...+|+|+|+++.           ..+.  +++++ .+|+.+.    
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~----------ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~-~~D~~~~----  275 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG----------GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLV-VMDVFDY----  275 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT----------TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEE-ESCHHHH----
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEE-ECCHHHH----
Confidence            56889999999999999999874          2358999999982           1233  67888 8886542    


Q ss_pred             HHHHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-ChHHHHHHHHhh
Q psy1489         127 RLVTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-NRPQLEESITRF  200 (229)
Q Consensus       127 ~i~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~~~~~~~~l~~~  200 (229)
                       +... ..+.+||+|++|++....+....  .........++..+.++|+|||.+++...... ....+.+.+...
T Consensus       276 -l~~~~~~~~~fD~Ii~DPP~~~~~~~~~--~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~  348 (385)
T 2b78_A          276 -FKYARRHHLTYDIIIIDPPSFARNKKEV--FSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKG  348 (385)
T ss_dssp             -HHHHHHTTCCEEEEEECCCCC-----CC--CCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             -HHHHHHhCCCccEEEECCCCCCCChhhH--HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHH
Confidence             1111 12458999999976421110111  11223445678889999999999998765543 345566655544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.14  E-value=3.4e-11  Score=101.20  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEE--EEEeCCC-CC-----------CCCCCeEE-ecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLV--LSVDKLP-IY-----------PIDGAVVL-SKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v--~gvD~~~-~~-----------~~~~~~~~-~~~D~~~~~~  124 (229)
                      .++.+|||+|||+|.++..++..+....     +...|  +|+|+|+ |.           .++++.+. ..+++.+  .
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~-----~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~--~  123 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQY-----PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSE--Y  123 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHS-----TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHH--H
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhC-----CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhh--h
Confidence            4678999999999988765554332100     33444  9999997 31           12333332 0332211  1


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .......+++++||+|++....     +..      .....+|+++.++|||||.|++...
T Consensus       124 ~~~~~~~~~~~~fD~V~~~~~l-----~~~------~d~~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          124 QSRMLEKKELQKWDFIHMIQML-----YYV------KDIPATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             HHHHHTTTCCCCEEEEEEESCG-----GGC------SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhhccccCCCceeEEEEeeee-----eec------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            0000011357889999996643     111      1235689999999999999998653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.13  E-value=5.4e-11  Score=99.84  Aligned_cols=139  Identities=13%  Similarity=0.078  Sum_probs=88.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------C-------------CCCCCeEEecCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------Y-------------PIDGAVVLSKCD  118 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~-------------~~~~~~~~~~~D  118 (229)
                      .++.+|||||||+|.++..++++ +         ..+|++||+++ +       .             ..++++++ .+|
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~---------~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~-~~D  142 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-D---------VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT-IGD  142 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C---------CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE-ESC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-C---------CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEE-ECc
Confidence            45689999999999999998875 3         46999999996 1       1             12456777 776


Q ss_pred             CCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----CChHHHH
Q psy1489         119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----RNRPQLE  194 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----~~~~~~~  194 (229)
                      ..+     .+..   +++||+|++|.+.. .+.  ....    .....++.+.++|+|||.+++.....    .....+.
T Consensus       143 ~~~-----~l~~---~~~fD~Ii~d~~~~-~~~--~~~l----~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~  207 (281)
T 1mjf_A          143 GFE-----FIKN---NRGFDVIIADSTDP-VGP--AKVL----FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAY  207 (281)
T ss_dssp             HHH-----HHHH---CCCEEEEEEECCCC-C-------T----TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHH
T ss_pred             hHH-----Hhcc---cCCeeEEEECCCCC-CCc--chhh----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHH
Confidence            533     1221   56899999987531 110  0000    02467888999999999999864321    1245566


Q ss_pred             HHHHhhCCeeEEEcC-CCCCCCCceEEEEecc
Q psy1489         195 ESITRFYSQVKILKP-PSSRSHSAELFLLGRG  225 (229)
Q Consensus       195 ~~l~~~F~~v~~~kp-~~sr~~s~E~Y~v~~~  225 (229)
                      ..++..|..+..... ..+- ...-.+++|.+
T Consensus       208 ~~l~~~f~~v~~~~~~vP~~-~g~~~~~~as~  238 (281)
T 1mjf_A          208 KEMKKVFDRVYYYSFPVIGY-ASPWAFLVGVK  238 (281)
T ss_dssp             HHHHHHCSEEEEEEECCTTS-SSSEEEEEEEE
T ss_pred             HHHHHHCCceEEEEEecCCC-CceEEEEEeeC
Confidence            677777988776542 1222 33345555543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.13  E-value=4.2e-11  Score=98.38  Aligned_cols=108  Identities=17%  Similarity=0.125  Sum_probs=71.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHH-hccCCCCCCCCcEEEEEeCCC-CC--------CC-----C-C--------------
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLV-NSHGYDSKQPKGLVLSVDKLP-IY--------PI-----D-G--------------  110 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~-~~~~~~~~~~~~~v~gvD~~~-~~--------~~-----~-~--------------  110 (229)
                      ++.+|||+|||+|.++..+++.+ .        +..+|+|+|+++ +.        ..     . .              
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~--------~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRR--------SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP  122 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGG--------GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhcc--------CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence            56899999999999999999872 1        346899999996 21        11     0 1              


Q ss_pred             -----------Ce-------------EEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHH
Q psy1489         111 -----------AV-------------VLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAV  166 (229)
Q Consensus       111 -----------~~-------------~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~  166 (229)
                                 +.             +. ++|+.+.....   ....+..||+|+++.+......  ..+.........+
T Consensus       123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~D~~~~~~~~---~~~~~~~fD~Iv~npp~~~~~~--~~~~~~~~~~~~~  196 (250)
T 1o9g_A          123 SYLEAAQAARRLRERLTAEGGALPCAIR-TADVFDPRALS---AVLAGSAPDVVLTDLPYGERTH--WEGQVPGQPVAGL  196 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCCEEEE-ECCTTCGGGHH---HHHTTCCCSEEEEECCGGGSSS--SSSCCCHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcccccccccccee-ecccccccccc---cccCCCCceEEEeCCCeecccc--ccccccccHHHHH
Confidence                       45             77 88887742110   0013458999999865321111  1100112345678


Q ss_pred             HHHHHHcccCCCEEEE
Q psy1489         167 IRFAVTYSKPGADCLI  182 (229)
Q Consensus       167 l~~~~~~LkpgG~~v~  182 (229)
                      +..+.++|+|||.+++
T Consensus       197 l~~~~~~LkpgG~l~~  212 (250)
T 1o9g_A          197 LRSLASALPAHAVIAV  212 (250)
T ss_dssp             HHHHHHHSCTTCEEEE
T ss_pred             HHHHHHhcCCCcEEEE
Confidence            8899999999999998

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.13  E-value=6.1e-11  Score=97.69  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|..+..+++.++        +.++|+++|+++ +.          .+ .+++++ .+|..+.     
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~--------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~-~gda~~~-----  143 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIP--------EDGKILAMDINKENYELGLPVIKKAGVDHKIDFR-EGPALPV-----  143 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSC--------TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEE-ESCHHHH-----
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHH-----
Confidence            3568999999999999999999863        368999999997 21          12 246777 7875441     


Q ss_pred             HHHHh----CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTIL----KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~----~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +....    .+++||+|++|...       .       .....+..+.++|+|||.+++.
T Consensus       144 l~~l~~~~~~~~~fD~V~~d~~~-------~-------~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          144 LDEMIKDEKNHGSYDFIFVDADK-------D-------NYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             HHHHHHSGGGTTCBSEEEECSCS-------T-------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHHhccCCCCCEEEEEEcCch-------H-------HHHHHHHHHHHhCCCCeEEEEe
Confidence            11111    25689999998642       0       1235677889999999999874

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.13  E-value=1.6e-10  Score=101.51  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=86.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      +++.+|||+|||+|.++..+++.          +..+|+|+|+++ +          ..+. +++++ .+|+.+.     
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~----------g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~-~~d~~~~-----  279 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA----------GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI-VGSAFEE-----  279 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE-ESCHHHH-----
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE-ECCHHHH-----
Confidence            47899999999999999999875          246999999996 1          1233 67788 8886542     


Q ss_pred             HHHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-ChHHHHHHHHhhC----
Q psy1489         128 LVTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-NRPQLEESITRFY----  201 (229)
Q Consensus       128 i~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~~~~~~~~l~~~F----  201 (229)
                      +... ..+.+||+|++|++...  ....+...........+..+.++|+|||.+++...... ....+...+...+    
T Consensus       280 ~~~~~~~~~~fD~Vi~dpP~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~  357 (396)
T 2as0_A          280 MEKLQKKGEKFDIVVLDPPAFV--QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  357 (396)
T ss_dssp             HHHHHHTTCCEEEEEECCCCSC--SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            1111 12568999999975321  11223334445566788999999999999988765543 3334444443322    


Q ss_pred             CeeEEEc
Q psy1489         202 SQVKILK  208 (229)
Q Consensus       202 ~~v~~~k  208 (229)
                      ..+.+..
T Consensus       358 ~~~~~i~  364 (396)
T 2as0_A          358 KFLKMLE  364 (396)
T ss_dssp             EEEEESS
T ss_pred             CeEEEEe
Confidence            2455554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.12  E-value=4.5e-10  Score=93.98  Aligned_cols=141  Identities=12%  Similarity=0.032  Sum_probs=91.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------C-----C--CCCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------Y-----P--IDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~-----~--~~~~~~~~~~D~~~~~~~  125 (229)
                      .+.+|||||||+|..+..++++.         +..+|++||+++ +       .     .  .++++++ .+|..+.   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~-~~D~~~~---  141 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHP---------SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ-VDDGFMH---  141 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT---------TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE-ESCSHHH---
T ss_pred             CCCEEEEECCchHHHHHHHHhCC---------CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEE-ECcHHHH---
Confidence            46899999999999999988753         457999999996 1       0     1  2467888 8886541   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhhC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRFY  201 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~F  201 (229)
                        +.  ..+++||+|++|.... .+..  .+.    .....++.+.++|+|||.+++......    ....+...+++.|
T Consensus       142 --l~--~~~~~fD~Ii~d~~~~-~~~~--~~l----~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F  210 (275)
T 1iy9_A          142 --IA--KSENQYDVIMVDSTEP-VGPA--VNL----FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIF  210 (275)
T ss_dssp             --HH--TCCSCEEEEEESCSSC-CSCC--CCC----STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTC
T ss_pred             --Hh--hCCCCeeEEEECCCCC-CCcc--hhh----hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhC
Confidence              21  1256899999987531 1110  000    013567789999999999998754321    2455667788889


Q ss_pred             CeeEEEcC-CCCCCCCceEEEEecc
Q psy1489         202 SQVKILKP-PSSRSHSAELFLLGRG  225 (229)
Q Consensus       202 ~~v~~~kp-~~sr~~s~E~Y~v~~~  225 (229)
                      ..+..+.. ..+-++..-.+++|.+
T Consensus       211 ~~v~~~~~~vp~~~~g~w~~~~ask  235 (275)
T 1iy9_A          211 PITKLYTANIPTYPSGLWTFTIGSK  235 (275)
T ss_dssp             SEEEEEEECCTTSGGGCEEEEEEES
T ss_pred             CCeEEEEEecCcccCcceEEEEeeC
Confidence            88876642 1222223345566643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.12  E-value=7.5e-11  Score=94.00  Aligned_cols=91  Identities=19%  Similarity=0.236  Sum_probs=68.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++. +          ++|+|+|+++ +          ..++++.++ .+|+.+..    
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~-~----------~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~----  138 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL-V----------QHVCSVERIKGLQWQARRRLKNLDLHNVSTR-HGDGWQGW----  138 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-S----------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ESCGGGCC----
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-C----------CEEEEEecCHHHHHHHHHHHHHcCCCceEEE-ECCcccCC----
Confidence            467899999999999999999887 3          6999999996 2          124568888 88876521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          ..+++||+|+++..+..     ..            ..+.++|+|||.+++.+..
T Consensus       139 ----~~~~~~D~i~~~~~~~~-----~~------------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          139 ----QARAPFDAIIVTAAPPE-----IP------------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ----GGGCCEEEEEESSBCSS-----CC------------THHHHTEEEEEEEEEEECS
T ss_pred             ----ccCCCccEEEEccchhh-----hh------------HHHHHhcccCcEEEEEEcC
Confidence                23568999999875421     11            1378899999999997655

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.12  E-value=3.6e-11  Score=97.14  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.++        +.++|+++|+++ +.          .. .+++++ .+|+.+.     
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~-~~d~~~~-----  133 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALP--------ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR-LKPALET-----  133 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEE-ESCHHHH-----
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEE-EcCHHHH-----
Confidence            4678999999999999999998753        357999999997 21          12 467788 8876431     


Q ss_pred             HHHHhCC---CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKD---DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~---~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +......   +.||+|++|...        .      .....+..+.++|+|||.+++.
T Consensus       134 ~~~~~~~~~~~~~D~v~~d~~~--------~------~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          134 LDELLAAGEAGTFDVAVVDADK--------E------NCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             HHHHHHTTCTTCEEEEEECSCS--------T------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhcCCCCCccEEEECCCH--------H------HHHHHHHHHHHHcCCCeEEEEE
Confidence            1111111   689999998742        0      1235678899999999999884

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.12  E-value=3.1e-11  Score=96.31  Aligned_cols=96  Identities=15%  Similarity=0.046  Sum_probs=65.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..++.+.          ..+|+|+|+++ |.          .+.+++++ ++|+.+.     + 
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~----------~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~-~~D~~~~-----~-  116 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY----------AAGATLIEMDRAVSQQLIKNLATLKAGNARVV-NSNAMSF-----L-  116 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT----------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEE-CSCHHHH-----H-
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-ECCHHHH-----H-
Confidence            57899999999999999877652          25999999997 21          23467888 8875441     1 


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH--HcccCCCEEEEeecC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAV--TYSKPGADCLIKIWD  186 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~--~~LkpgG~~v~~~~~  186 (229)
                      . ..++.||+|++|++..     ..+       ...++..+.  ++|+|||.+++....
T Consensus       117 ~-~~~~~fD~V~~~~p~~-----~~~-------~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          117 A-QKGTPHNIVFVDPPFR-----RGL-------LEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             S-SCCCCEEEEEECCSSS-----TTT-------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             h-hcCCCCCEEEECCCCC-----CCc-------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence            1 2356899999987631     111       123344443  469999999987644

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.12  E-value=3.1e-10  Score=95.95  Aligned_cols=143  Identities=10%  Similarity=0.007  Sum_probs=90.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C---------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P---------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~---------~~~~~~~~~~D~~~~~~  124 (229)
                      ..+.+|||||||+|.++..++++.         +..+|+++|+++ +.     .         .++++++ .+|..+.  
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~-~~D~~~~--  156 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD---------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV-IANGAEY--  156 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST---------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHHH--
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEE-ECcHHHH--
Confidence            346899999999999999988764         457999999996 10     0         2467777 7875431  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~  200 (229)
                         +.  ..+++||+|++|......+.  ...    ......+..+.++|+|||.+++......    ....+...++..
T Consensus       157 ---l~--~~~~~fD~Ii~d~~~~~~~~--~~~----l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  225 (296)
T 1inl_A          157 ---VR--KFKNEFDVIIIDSTDPTAGQ--GGH----LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV  225 (296)
T ss_dssp             ---GG--GCSSCEEEEEEEC----------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred             ---Hh--hCCCCceEEEEcCCCcccCc--hhh----hhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH
Confidence               11  12568999999864210110  000    0124678889999999999998653321    245566778888


Q ss_pred             CCeeEEEcC-CCCCCCCceEEEEecc
Q psy1489         201 YSQVKILKP-PSSRSHSAELFLLGRG  225 (229)
Q Consensus       201 F~~v~~~kp-~~sr~~s~E~Y~v~~~  225 (229)
                      |..+..+.. ..+-++..-.+++|.+
T Consensus       226 F~~v~~~~~~vp~~p~g~~~f~~as~  251 (296)
T 1inl_A          226 FPITRVYLGFMTTYPSGMWSYTFASK  251 (296)
T ss_dssp             CSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred             CCceEEEEeecCccCCCceEEEEecC
Confidence            988876641 1111234455666653

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.12  E-value=1.6e-10  Score=100.15  Aligned_cols=109  Identities=25%  Similarity=0.290  Sum_probs=75.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC------------CC---CCCeEEecCCCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY------------PI---DGAVVLSKCDFTQ  121 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~------------~~---~~~~~~~~~D~~~  121 (229)
                      .++|++|||+|||||+.+.++++..         ..+.|+++|+++  +.            .+   .++.+. ..|...
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~---------~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~-~~D~~~  215 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTG---------CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVT-SWDGRK  215 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTT---------CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEE-CCCGGG
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhc---------CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEE-eCchhh
Confidence            4689999999999999999999864         457899999985  10            01   245566 666554


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCC--CCC--c------cc---HHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNAT--GMR--E------MD---HDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~--g~~--~------~d---~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .      .. ...+.||.|+.|+++..+  |..  .      ..   ......++..+|..+.++|||||++|-.+
T Consensus       216 ~------~~-~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          216 W------GE-LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             H------HH-HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c------ch-hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            2      11 346789999999986542  111  1      11   11223456789999999999999998544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.11  E-value=2e-11  Score=98.05  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      .++.+|||+|||+|.++..+++. +          .+++|+|+++ +.   ......+. .+|+.+..      ..++++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~----------~~~~~~D~~~~~~~~~~~~~~~~~-~~d~~~~~------~~~~~~   92 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G----------TRVSGIEAFPEAAEQAKEKLDHVV-LGDIETMD------MPYEEE   92 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T----------CEEEEEESSHHHHHHHHTTSSEEE-ESCTTTCC------CCSCTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C----------CeEEEEeCCHHHHHHHHHhCCcEE-EcchhhcC------CCCCCC
Confidence            47889999999999999998875 3          6999999987 21   11123566 78876521      114467


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .||+|++.....    +..+       ...++..+.++|+|||.+++.+..
T Consensus        93 ~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           93 QFDCVIFGDVLE----HLFD-------PWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             CEEEEEEESCGG----GSSC-------HHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             ccCEEEECChhh----hcCC-------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            899999965431    1111       246788899999999999987643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.11  E-value=4.3e-11  Score=93.35  Aligned_cols=102  Identities=15%  Similarity=0.037  Sum_probs=68.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++.          +..+|+|+|+++ +.          .+ +++.++ .+|+.+..  ..
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~--~~  109 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR----------GMDKSICIEKNFAALKVIKENIAITKEPEKFEVR-KMDANRAL--EQ  109 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE-ESCHHHHH--HH
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc----------CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEE-ECcHHHHH--HH
Confidence            46789999999999999988774          346999999997 21          11 357788 88865521  11


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHH--HHHcccCCCEEEEeecCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRF--AVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~--~~~~LkpgG~~v~~~~~~~  188 (229)
                      +  ...++.||+|++|.+..     ..+.       ...+..  +.++|+|||.+++......
T Consensus       110 ~--~~~~~~fD~i~~~~~~~-----~~~~-------~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          110 F--YEEKLQFDLVLLDPPYA-----KQEI-------VSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             H--HHTTCCEEEEEECCCGG-----GCCH-------HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             H--HhcCCCCCEEEECCCCC-----chhH-------HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            1  12357899999987521     1111       112222  3889999999998765543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.11  E-value=9.2e-11  Score=102.25  Aligned_cols=93  Identities=24%  Similarity=0.316  Sum_probs=66.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +|++|||||||+|.++..+|+.          ++.+|+|||.++|.          .+ ..+.++ ++|+.+..      
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~a----------GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i-~~~~~~~~------  145 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQA----------GARRVYAVEASAIWQQAREVVRFNGLEDRVHVL-PGPVETVE------  145 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEE-ESCTTTCC------
T ss_pred             CCCEEEEeCCCccHHHHHHHHh----------CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEE-eeeeeeec------
Confidence            6899999999999999887764          35699999999852          12 347888 99988742      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                        + +++||+|+|...-.. ...+       ..+..++....++|+|||.++
T Consensus       146 --l-pe~~DvivsE~~~~~-l~~e-------~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          146 --L-PEQVDAIVSEWMGYG-LLHE-------SMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             --C-SSCEEEEECCCCBTT-BTTT-------CSHHHHHHHHHHHEEEEEEEE
T ss_pred             --C-CccccEEEeeccccc-cccc-------chhhhHHHHHHhhCCCCceEC
Confidence              3 468999999653211 1111       123456666789999999986

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.11  E-value=2.4e-11  Score=101.72  Aligned_cols=105  Identities=19%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--------------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--------------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--------------~~~~~~~~~~D~~~~~~  124 (229)
                      .++.+|||+|||+|.++..+++. +          .+|+|+|+++ |..              ..++.+. .+|+.+.. 
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~d~~~~~-  122 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE-G----------FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE-EANWLTLD-  122 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE-ECCGGGHH-
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHhhhhcccccccceeeEe-ecChhhCc-
Confidence            46789999999999999998876 2          4999999997 210              1346667 77776521 


Q ss_pred             HHHHHHHhCCCCccEEEeC-CCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         125 QDRLVTILKDDKLDVVLSD-MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd-~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          ...+++++||+|++. ....    +..+.....+....++.++.++|||||.|++.+.
T Consensus       123 ----~~~~~~~~fD~V~~~g~~l~----~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          123 ----KDVPAGDGFDAVICLGNSFA----HLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             ----HHSCCTTCEEEEEECTTCGG----GSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----cccccCCCeEEEEEcChHHh----hcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                111457899999996 3221    0001000012245788999999999999998653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.11  E-value=1.3e-10  Score=99.21  Aligned_cols=124  Identities=13%  Similarity=0.004  Sum_probs=81.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CC------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YP------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~------~~~~~~~~~~D~~~~~~  124 (229)
                      .++.+|||||||+|..+..+++..         +..+|+++|+++ +        ..      .++++++ .+|+.+.  
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~-~~D~~~~--  174 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE---------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF-CGDGFEF--  174 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT---------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE-CSCHHHH--
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEE-EChHHHH--
Confidence            356899999999999999988753         457999999996 1        11      2457777 7775431  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHH-HHHHHHHHHcccCCCEEEEeecCC----CChHHHHHHHHh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA-IAVIRFAVTYSKPGADCLIKIWDG----RNRPQLEESITR  199 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~-~~~l~~~~~~LkpgG~~v~~~~~~----~~~~~~~~~l~~  199 (229)
                         +..  .+++||+|++|.... .+   . .   ..+. ...++.+.++|+|||.+++..-..    .....+...++.
T Consensus       175 ---l~~--~~~~fD~Ii~d~~~~-~~---~-~---~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  241 (314)
T 2b2c_A          175 ---LKN--HKNEFDVIITDSSDP-VG---P-A---ESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRK  241 (314)
T ss_dssp             ---HHH--CTTCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred             ---HHh--cCCCceEEEEcCCCC-CC---c-c---hhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHH
Confidence               221  357899999987421 01   0 0   0111 577888999999999999865221    124456677888


Q ss_pred             hCCeeEEEc
Q psy1489         200 FYSQVKILK  208 (229)
Q Consensus       200 ~F~~v~~~k  208 (229)
                      .|..+.+..
T Consensus       242 vF~~v~~~~  250 (314)
T 2b2c_A          242 IFPAVTYAQ  250 (314)
T ss_dssp             HCSEEEEEE
T ss_pred             HCCcceEEE
Confidence            898876553

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.10  E-value=2.2e-10  Score=99.97  Aligned_cols=97  Identities=21%  Similarity=0.202  Sum_probs=69.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..++.+|||||||+|.++..+++. +         ..+|+|+|+++|.          .+ ..++++ .+|+.+..    
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~-g---------~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~----  125 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQA-G---------ARKVYAVEATKMADHARALVKANNLDHIVEVI-EGSVEDIS----  125 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHT-T---------CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEE-ESCGGGCC----
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhc-C---------CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEE-ECchhhcC----
Confidence            357899999999999999998876 2         3599999999642          12 237888 89887632    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                          + +++||+|+++....... ..       .....++..+.++|+|||.|++.
T Consensus       126 ----~-~~~~D~Iv~~~~~~~l~-~e-------~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          126 ----L-PEKVDVIISEWMGYFLL-RE-------SMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             ----C-SSCEEEEEECCCBTTBT-TT-------CTHHHHHHHHHHHEEEEEEEESS
T ss_pred             ----c-CCcceEEEEcChhhccc-ch-------HHHHHHHHHHHhhCCCCeEEEEe
Confidence                2 27899999976432111 00       11345778888999999999754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.10  E-value=9.1e-11  Score=100.00  Aligned_cols=92  Identities=25%  Similarity=0.324  Sum_probs=68.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++.+|||+|||+|.++..+++..+        ..++|+|+|+++ +          ..++++.+. .+|+.+..    
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~-~~d~~~~~----  139 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVG--------EKGLVVSVEYSRKICEIAKRNVERLGIENVIFV-CGDGYYGV----  139 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ESCGGGCC----
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEE-ECChhhcc----
Confidence            46789999999999999999998863        247899999996 2          123567888 88876521    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          ..+++||+|+++.+...     ..            ..+.++|||||.+++.+
T Consensus       140 ----~~~~~fD~Iv~~~~~~~-----~~------------~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          140 ----PEFSPYDVIFVTVGVDE-----VP------------ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             ----GGGCCEEEEEECSBBSC-----CC------------HHHHHHEEEEEEEEEEB
T ss_pred             ----ccCCCeEEEEEcCCHHH-----HH------------HHHHHhcCCCcEEEEEE
Confidence                12468999999875421     11            34678999999999864

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.10  E-value=5.4e-11  Score=102.32  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=77.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.+|.+|||+|||+|.++.. ++.           ..+|+|+|+++ +          ..+ .++.++ .+|+.+.    
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~~-----------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~-~~D~~~~----  255 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CKN-----------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI-LSDVREV----  255 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TTT-----------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ESCGGGC----
T ss_pred             cCCCCEEEEccCccCHHHHh-ccC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECChHHh----
Confidence            35789999999999999999 762           36999999996 1          123 367888 8987762    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY  201 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F  201 (229)
                            . ..||+|++|++...               ...+..+.++|+|||.+++..+... ...+.+.+...+
T Consensus       256 ------~-~~fD~Vi~dpP~~~---------------~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~~  307 (336)
T 2yx1_A          256 ------D-VKGNRVIMNLPKFA---------------HKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKKC  307 (336)
T ss_dssp             ------C-CCEEEEEECCTTTG---------------GGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHHS
T ss_pred             ------c-CCCcEEEECCcHhH---------------HHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHhc
Confidence                  1 68999999875311               1466778899999999998766655 567777777653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.10  E-value=8.6e-11  Score=98.76  Aligned_cols=124  Identities=13%  Similarity=0.086  Sum_probs=84.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CC------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YP------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~------~~~~~~~~~~D~~~~~~  124 (229)
                      .++.+|||||||+|.++..+++..         +..+|+++|+++ +        ..      .++++++ .+|..+.  
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~-~~D~~~~--  144 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK---------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF-IEDASKF--  144 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE-ESCHHHH--
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEE-ECChHHH--
Confidence            456899999999999999988653         457999999996 1        11      2467777 7875431  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----CChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----RNRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----~~~~~~~~~l~~~  200 (229)
                         +..  .+++||+|++|... ..+.  ....    .....++.+.++|+|||.+++.....    .....+...++..
T Consensus       145 ---l~~--~~~~fD~Ii~d~~~-~~~~--~~~l----~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  212 (283)
T 2i7c_A          145 ---LEN--VTNTYDVIIVDSSD-PIGP--AETL----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  212 (283)
T ss_dssp             ---HHH--CCSCEEEEEEECCC-TTTG--GGGG----SSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             ---HHh--CCCCceEEEEcCCC-CCCc--chhh----hHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH
Confidence               211  25789999998742 1111  1110    01467888999999999999874321    1235566778888


Q ss_pred             CCeeEEE
Q psy1489         201 YSQVKIL  207 (229)
Q Consensus       201 F~~v~~~  207 (229)
                      |..+..+
T Consensus       213 F~~v~~~  219 (283)
T 2i7c_A          213 FKKVEYA  219 (283)
T ss_dssp             CSEEEEE
T ss_pred             CCceEEE
Confidence            9887654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.09  E-value=1.3e-09  Score=94.25  Aligned_cols=100  Identities=20%  Similarity=0.171  Sum_probs=72.8

Q ss_pred             hhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCC
Q psy1489          54 SKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQ  121 (229)
Q Consensus        54 ~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~  121 (229)
                      ..+. +.++.+|||+|||+|.++..+++..         |..+++++|+ + +.          .+. +++++ .+|+.+
T Consensus       184 ~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~  251 (359)
T 1x19_A          184 EEAK-LDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGI-AVDIYK  251 (359)
T ss_dssp             HHCC-CTTCCEEEEESCTTCHHHHHHHHHC---------TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEE-ECCTTT
T ss_pred             HhcC-CCCCCEEEEECCcccHHHHHHHHHC---------CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEE-eCcccc
Confidence            3444 4567899999999999999999886         5679999999 6 31          133 38888 999887


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..        ++  .+|+|++....     +.++.    +.+..+++.+.++|+|||.+++..
T Consensus       252 ~~--------~~--~~D~v~~~~vl-----h~~~d----~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          252 ES--------YP--EADAVLFCRIL-----YSANE----QLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             SC--------CC--CCSEEEEESCG-----GGSCH----HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CC--------CC--CCCEEEEechh-----ccCCH----HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            31        22  34999986543     22221    235678999999999999997654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.09  E-value=2.5e-10  Score=97.79  Aligned_cols=95  Identities=23%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++.          +..+|+|+|+++|.          .+ .+++++ .+|+.+..     
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~----------g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~-----  100 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH----------GAKHVIGVDMSSIIEMAKELVELNGFSDKITLL-RGKLEDVH-----  100 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT----------CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEE-ESCTTTSC-----
T ss_pred             cCCCEEEEecCccHHHHHHHHHC----------CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEE-ECchhhcc-----
Confidence            46789999999999999988875          34699999999742          12 347888 99988732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                         +++++||+|+++...... ...       .....++..+.++|+|||.++
T Consensus       101 ---~~~~~~D~Ivs~~~~~~l-~~~-------~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          101 ---LPFPKVDIIISEWMGYFL-LYE-------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ---CSSSCEEEEEECCCBTTB-STT-------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---CCCCcccEEEEeCchhhc-ccH-------HHHHHHHHHHHhhcCCCeEEE
Confidence               445789999997532110 011       113456777889999999997

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.08  E-value=2.7e-10  Score=99.00  Aligned_cols=103  Identities=12%  Similarity=0.108  Sum_probs=74.9

Q ss_pred             hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHH
Q psy1489          52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +...+..+.++.+|||+|||+|.++..++++.         +..+++++|+..+    ...++++++ .+|+.++     
T Consensus       200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~~-----  264 (372)
T 1fp1_D          200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY---------PLIKGINFDLPQVIENAPPLSGIEHV-GGDMFAS-----  264 (372)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECHHHHTTCCCCTTEEEE-ECCTTTC-----
T ss_pred             HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC---------CCCeEEEeChHHHHHhhhhcCCCEEE-eCCcccC-----
Confidence            33444434567899999999999999999886         5679999998322    124578888 9998762     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          ++.  ||+|++....     +.++.    ..+..+|+.+.++|+|||.+++..
T Consensus       265 ----~~~--~D~v~~~~~l-----h~~~d----~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          265 ----VPQ--GDAMILKAVC-----HNWSD----EKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             ----CCC--EEEEEEESSG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCC--CCEEEEeccc-----ccCCH----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence                333  9999996542     22222    234578999999999999998763

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.08  E-value=1.5e-10  Score=92.56  Aligned_cols=94  Identities=26%  Similarity=0.385  Sum_probs=69.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..+        +.++|+++|+++ +.          ..+++.+. .+|+....    
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~----  141 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVG--------EDGLVVSIERIPELAEKAERTLRKLGYDNVIVI-VGDGTLGY----  141 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEE-ESCGGGCC----
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE-ECCcccCC----
Confidence            46789999999999999999999874        457999999996 21          23467788 88864310    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          ..++.||+|+++....     ...            ..+.++|+|||.+++.+..
T Consensus       142 ----~~~~~fD~v~~~~~~~-----~~~------------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          142 ----EPLAPYDRIYTTAAGP-----KIP------------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             ----GGGCCEEEEEESSBBS-----SCC------------HHHHHTEEEEEEEEEEESS
T ss_pred             ----CCCCCeeEEEECCchH-----HHH------------HHHHHHcCCCcEEEEEECC
Confidence                1246799999976531     111            3578899999999987654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.08  E-value=2.7e-10  Score=92.53  Aligned_cols=110  Identities=10%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhH
Q psy1489          57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDI  124 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~  124 (229)
                      .++++|.+|||+|||+|.++..+++..         +..+|+|+|+++-           ..+. .+++. .+|..+.  
T Consensus        11 ~~v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~-~~d~l~~--   78 (225)
T 3kr9_A           11 SFVSQGAILLDVGSDHAYLPIELVERG---------QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVR-LANGLAA--   78 (225)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE-ECSGGGG--
T ss_pred             HhCCCCCEEEEeCCCcHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-ECchhhh--
Confidence            346789999999999999999999863         5679999999961           1233 47788 8887542  


Q ss_pred             HHHHHHHhCCC-CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDD-KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~-~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                             ++.. .||+|+..++    |     .    .+...++..+...|+++|+||+.-.  .....+.+.|...
T Consensus        79 -------l~~~~~~D~IviaG~----G-----g----~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~  133 (225)
T 3kr9_A           79 -------FEETDQVSVITIAGM----G-----G----RLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDH  133 (225)
T ss_dssp             -------CCGGGCCCEEEEEEE----C-----H----HHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHT
T ss_pred             -------cccCcCCCEEEEcCC----C-----h----HHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHC
Confidence                   3333 6998875321    1     1    2345678889999999999998554  3567777777665

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.08  E-value=1.5e-10  Score=98.93  Aligned_cols=125  Identities=13%  Similarity=0.077  Sum_probs=85.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CC------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YP------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~------~~~~~~~~~~D~~~~~~  124 (229)
                      .++.+|||+|||+|.++..+++..         +..+|+++|+++ +        ..      .++++++ .+|+.+.  
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~-~~D~~~~--  182 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK---------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF-IEDASKF--  182 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE-ESCHHHH--
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEE-EccHHHH--
Confidence            356899999999999999988753         457999999996 1        11      2457788 8875431  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~  200 (229)
                         +.  ..+++||+|++|... ..+.  ....    .....+..+.++|+|||.+++......    ....+.+.++..
T Consensus       183 ---l~--~~~~~fDvIi~d~~~-p~~~--~~~l----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  250 (321)
T 2pt6_A          183 ---LE--NVTNTYDVIIVDSSD-PIGP--AETL----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  250 (321)
T ss_dssp             ---HH--HCCSCEEEEEEECCC-SSSG--GGGG----SSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred             ---Hh--hcCCCceEEEECCcC-CCCc--chhh----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence               11  125689999998742 1110  1100    014678889999999999998754321    245566777788


Q ss_pred             CCeeEEEc
Q psy1489         201 YSQVKILK  208 (229)
Q Consensus       201 F~~v~~~k  208 (229)
                      |..+..+.
T Consensus       251 F~~v~~~~  258 (321)
T 2pt6_A          251 FKKVEYAN  258 (321)
T ss_dssp             CSEEEEEE
T ss_pred             CCCeEEEE
Confidence            98887664

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.08  E-value=1.5e-09  Score=93.99  Aligned_cols=97  Identities=24%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..         +..+++++|+ + +.          .+ .+++++ .+|+.+.    
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~---------~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~----  244 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRA---------PHLRGTLVEL-AGPAERARRRFADAGLADRVTVA-EGDFFKP----  244 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE-ECCTTSC----
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHC---------CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEE-eCCCCCc----
Confidence            3567899999999999999999875         5679999999 6 21          12 268888 9998752    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           ++. .||+|++....     +.++.    ..+..+++.+.++|+|||.+++..+
T Consensus       245 -----~~~-~~D~v~~~~vl-----~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          245 -----LPV-TADVVLLSFVL-----LNWSD----EDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -----CSC-CEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -----CCC-CCCEEEEeccc-----cCCCH----HHHHHHHHHHHHhcCCCcEEEEEec
Confidence                 333 49999996543     12222    2235788999999999999987554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.08  E-value=9.3e-10  Score=94.05  Aligned_cols=119  Identities=15%  Similarity=0.071  Sum_probs=84.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++..         |..+++++|+ + +.          .+ +++++. .+|+.++     
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  231 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAH---------EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVV-VGSFFDP-----  231 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE-ECCTTSC-----
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHC---------CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEe-cCCCCCC-----
Confidence            456899999999999999999886         5679999999 5 21          12 468888 9998752     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-------------------
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-------------------  188 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-------------------  188 (229)
                          ++. .||+|++....     +.++.    ..+..+++.+.++|+|||.+++..+..+                   
T Consensus       232 ----~p~-~~D~v~~~~vl-----h~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~  297 (332)
T 3i53_A          232 ----LPA-GAGGYVLSAVL-----HDWDD----LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGK  297 (332)
T ss_dssp             ----CCC-SCSEEEEESCG-----GGSCH----HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCC
T ss_pred             ----CCC-CCcEEEEehhh-----ccCCH----HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCC
Confidence                333 79999995532     22222    2356789999999999999987543211                   


Q ss_pred             --ChHHHHHHHHhh-CCeeEEEc
Q psy1489         189 --NRPQLEESITRF-YSQVKILK  208 (229)
Q Consensus       189 --~~~~~~~~l~~~-F~~v~~~k  208 (229)
                        ...++...+++. |..+.+..
T Consensus       298 ~~t~~e~~~ll~~aGf~~~~~~~  320 (332)
T 3i53_A          298 ERSLAELGELAAQAGLAVRAAHP  320 (332)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEE
Confidence              234555666655 77776663

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.08  E-value=4.5e-11  Score=91.75  Aligned_cols=99  Identities=14%  Similarity=0.025  Sum_probs=67.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+|||+|.++..+++..           ..|+|+|+++ +.          .. +++++ .+|+.+..  ..+.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~-~~d~~~~~--~~~~  105 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG-----------WEAVLVEKDPEAVRLLKENVRRTGL-GARVV-ALPVEVFL--PEAK  105 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT-----------CEEEEECCCHHHHHHHHHHHHHHTC-CCEEE-CSCHHHHH--HHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC-----------CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEE-eccHHHHH--Hhhh
Confidence            67899999999999999988763           2499999997 21          12 67888 88765421  1111


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeecCCCC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~~~~~  189 (229)
                        -.+++||+|+++.+..    ...+         ..+..+  .++|+|||.+++.......
T Consensus       106 --~~~~~~D~i~~~~~~~----~~~~---------~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          106 --AQGERFTVAFMAPPYA----MDLA---------ALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             --HTTCCEEEEEECCCTT----SCTT---------HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             --ccCCceEEEEECCCCc----hhHH---------HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence              1234799999987542    1111         223333  4999999999987765443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.07  E-value=5.7e-10  Score=97.00  Aligned_cols=96  Identities=10%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +.++.+|||+|||+|.++..+++..         |..+++++|+..+    ...++++++ .+|+.++         +++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~~---------~p~  261 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY---------PSINAINFDLPHVIQDAPAFSGVEHL-GGDMFDG---------VPK  261 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECHHHHTTCCCCTTEEEE-ECCTTTC---------CCC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC---------CCCEEEEEehHHHHHhhhhcCCCEEE-ecCCCCC---------CCC
Confidence            4567899999999999999999886         6679999999332    223578899 9998762         343


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .  |+|++....     +.+..    ..+..+|+.+.++|+|||++++..
T Consensus       262 ~--D~v~~~~vl-----h~~~~----~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          262 G--DAIFIKWIC-----HDWSD----EHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             C--SEEEEESCG-----GGBCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             C--CEEEEechh-----hcCCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            3  999985532     22222    335678999999999999998754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.07  E-value=1.1e-10  Score=94.68  Aligned_cols=95  Identities=18%  Similarity=0.179  Sum_probs=70.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++..         +.++|+++|+++ +.          .+ .++.++ .+|+.+.     
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  117 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQAL---------PEATIVSIERDERRYEEAHKHVKALGLESRIELL-FGDALQL-----  117 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHC---------TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE-CSCGGGS-----
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECCHHHH-----
Confidence            467899999999999999999876         457999999996 21          22 357888 8887652     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.....++.||+|+++....              .....+..+.++|+|||.+++.
T Consensus       118 ~~~~~~~~~fD~I~~~~~~~--------------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          118 GEKLELYPLFDVLFIDAAKG--------------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             HHHHTTSCCEEEEEEEGGGS--------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHhcccCCCccEEEECCCHH--------------HHHHHHHHHHHHcCCCeEEEEE
Confidence            11111246899999976421              1346788899999999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.06  E-value=7.2e-11  Score=97.45  Aligned_cols=96  Identities=15%  Similarity=0.073  Sum_probs=69.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++.+|||+|||+|.++..+++. +          .+|+|+|+++ |.     .... .++ .+|+.+..        ++
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~gvD~s~~~l~~a~~~~~~-~~~-~~d~~~~~--------~~  111 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER-G----------FEVVLVDPSKEMLEVAREKGVK-NVV-EAKAEDLP--------FP  111 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-T----------CEEEEEESCHHHHHHHHHHTCS-CEE-ECCTTSCC--------SC
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc-C----------CeEEEEeCCHHHHHHHHhhcCC-CEE-ECcHHHCC--------CC
Confidence            37889999999999999998875 2          5899999997 21     1112 266 78887632        45


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ++.||+|++....        .+  .......++.++.++|+|||.+++.++.
T Consensus       112 ~~~fD~v~~~~~~--------~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          112 SGAFEAVLALGDV--------LS--YVENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             TTCEEEEEECSSH--------HH--HCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CCCEEEEEEcchh--------hh--ccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6789999995321        01  1012457889999999999999987654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.06  E-value=1.2e-10  Score=109.24  Aligned_cols=109  Identities=14%  Similarity=0.066  Sum_probs=74.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC--CCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID--GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~--~~~~~~~~D~~~~~~~~  126 (229)
                      .+|.+|||+|||+|+++..++..          ...+|++||+|+ +          ..+.  +++++ ++|+.+.    
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~----------ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i-~~D~~~~----  602 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLG----------GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLI-QADCLAW----  602 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEE-ESCHHHH----
T ss_pred             cCCCcEEEeeechhHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE-ecCHHHH----
Confidence            36899999999999999998874          346899999996 1          1233  57888 8886551    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                       +.  ..+++||+|++|++....+-...+.+........++..+.++|+|||.+++..-.
T Consensus       603 -l~--~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          603 -LR--EANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             -HH--HCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -HH--hcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence             21  2357899999998642211111111122344567888999999999999986644

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.06  E-value=1.7e-10  Score=98.32  Aligned_cols=127  Identities=18%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C-------CCCCeEEecCCCCChh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P-------IDGAVVLSKCDFTQPD  123 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~-------~~~~~~~~~~D~~~~~  123 (229)
                      .++.+|||||||+|.++..++++.         +..+|++||+++ +.        .       .++++++ .+|+.+. 
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~-~~D~~~~-  144 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP---------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV-IDDARAY-  144 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE-ESCHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC---------CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEE-EchHHHH-
Confidence            456899999999999999988763         456999999996 20        0       2467787 7875431 


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCc-ccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-----CCChHHHHHHH
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMRE-MDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-----GRNRPQLEESI  197 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~-~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-----~~~~~~~~~~l  197 (229)
                          +.  ..+++||+|++|..... +... ....    .....+..+.++|+|||.|++....     ......+...+
T Consensus       145 ----l~--~~~~~fD~Ii~d~~~~~-~~~~~~~~l----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l  213 (314)
T 1uir_A          145 ----LE--RTEERYDVVIIDLTDPV-GEDNPARLL----YTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTV  213 (314)
T ss_dssp             ----HH--HCCCCEEEEEEECCCCB-STTCGGGGG----SSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHH
T ss_pred             ----HH--hcCCCccEEEECCCCcc-cccCcchhc----cHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHH
Confidence                11  13678999999875311 0000 0000    0246788899999999999986532     22356677788


Q ss_pred             HhhCCeeEEEc
Q psy1489         198 TRFYSQVKILK  208 (229)
Q Consensus       198 ~~~F~~v~~~k  208 (229)
                      +..|..+....
T Consensus       214 ~~~F~~v~~~~  224 (314)
T 1uir_A          214 REAFRYVRSYK  224 (314)
T ss_dssp             HTTCSEEEEEE
T ss_pred             HHHCCceEEEE
Confidence            88898876553

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.06  E-value=2.5e-10  Score=96.94  Aligned_cols=124  Identities=14%  Similarity=0.041  Sum_probs=82.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------------~~~~~~~~~~~D~~~~~~  124 (229)
                      .++.+|||||||+|.++..++++.         +..+|++||+++ +.              ..++++++ .+|..+   
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~---------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~-~~Da~~---  160 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP---------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH-VGDGFE---  160 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHH---
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE-ECcHHH---
Confidence            456899999999999999988763         457999999996 21              12457777 777543   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~  200 (229)
                        .+.  ..+++||+|++|..... +.  ..+    ......++.+.++|+|||.+++......    ....+.+.++..
T Consensus       161 --~l~--~~~~~fD~Ii~d~~~~~-~~--~~~----l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  229 (304)
T 2o07_A          161 --FMK--QNQDAFDVIITDSSDPM-GP--AES----LFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL  229 (304)
T ss_dssp             --HHH--TCSSCEEEEEEECC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH
T ss_pred             --HHh--hCCCCceEEEECCCCCC-Cc--chh----hhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh
Confidence              121  13578999999875211 10  000    0124678889999999999998653321    135566777888


Q ss_pred             CCeeEEE
Q psy1489         201 YSQVKIL  207 (229)
Q Consensus       201 F~~v~~~  207 (229)
                      |..+...
T Consensus       230 f~~v~~~  236 (304)
T 2o07_A          230 FPVVAYA  236 (304)
T ss_dssp             CSEEEEE
T ss_pred             CCCceeE
Confidence            9877665

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.06  E-value=1e-09  Score=93.57  Aligned_cols=98  Identities=17%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++..         |..+++++|++.+.          .+ .++.+. .+|+.+..     
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-----  228 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN---------PNAEIFGVDWASVLEVAKENARIQGVASRYHTI-AGSAFEVD-----  228 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC---------TTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEE-ESCTTTSC-----
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC---------CCCeEEEEecHHHHHHHHHHHHhcCCCcceEEE-ecccccCC-----
Confidence            567899999999999999999886         56799999998421          12 248888 99987631     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         ++ ..||+|++....     +..+.    ..+..+++.+.++|+|||.+++..+
T Consensus       229 ---~~-~~~D~v~~~~~l-----~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          229 ---YG-NDYDLVLLPNFL-----HHFDV----ATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             ---CC-SCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ---CC-CCCcEEEEcchh-----ccCCH----HHHHHHHHHHHHhCCCCcEEEEEee
Confidence               33 349999995432     11211    2345788999999999999887543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.05  E-value=9e-11  Score=101.39  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=68.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++.          +..+|+|+|+++|.          .+ .+++++ .+|+.+..     
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~----------g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~-~~d~~~~~-----  112 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQA----------GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVI-PGKVEEVS-----  112 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEE-ESCTTTCC-----
T ss_pred             CCcCEEEEcCCCccHHHHHHHhC----------CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcchhhCC-----
Confidence            46889999999999999998875          34699999999742          22 467888 99988731     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         + +++||+|+++.......    .     +.....+..+.++|+|||.+++.
T Consensus       113 ---~-~~~~D~Ivs~~~~~~~~----~-----~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          113 ---L-PEQVDIIISEPMGYMLF----N-----ERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             ---C-SSCEEEEEECCCBTTBT----T-----TSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ---C-CCceeEEEEeCchhcCC----h-----HHHHHHHHHHHhhcCCCeEEEEe
Confidence               2 35799999975421111    0     11234566788999999999854

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.05  E-value=1.4e-10  Score=99.67  Aligned_cols=121  Identities=10%  Similarity=0.044  Sum_probs=80.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC------------C--CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY------------P--IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~------------~--~~~~~~~~~~D~~~~~~  124 (229)
                      .++.+|||||||+|.++..++++.         +..+|++||+++ +.            .  .++++++ .+|+.+   
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~---------~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~-~~D~~~---  185 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA---------SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLV-IGDGVA---  185 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEE-ESCHHH---
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC---------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEE-ECCHHH---
Confidence            456899999999999999988763         457999999996 21            0  2467888 887543   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CC-ChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GR-NRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~-~~~~~~~~l~~~  200 (229)
                         ....+++++||+|++|.... .+  ..+.    ......+..+.++|+|||.|++..-.   .. ....+...++..
T Consensus       186 ---~l~~~~~~~fDlIi~d~~~p-~~--~~~~----l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  255 (334)
T 1xj5_A          186 ---FLKNAAEGSYDAVIVDSSDP-IG--PAKE----LFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREI  255 (334)
T ss_dssp             ---HHHTSCTTCEEEEEECCCCT-TS--GGGG----GGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             ---HHHhccCCCccEEEECCCCc-cC--cchh----hhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHh
Confidence               11113357899999987521 11  1111    01246788899999999999986322   11 134456667777


Q ss_pred             CCe
Q psy1489         201 YSQ  203 (229)
Q Consensus       201 F~~  203 (229)
                      |..
T Consensus       256 F~~  258 (334)
T 1xj5_A          256 FKG  258 (334)
T ss_dssp             CSS
T ss_pred             Ccc
Confidence            874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.05  E-value=1e-09  Score=95.36  Aligned_cols=100  Identities=20%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             hhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCC
Q psy1489          54 SKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQ  121 (229)
Q Consensus        54 ~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~  121 (229)
                      ..+. +.++.+|||+|||+|.++..+++..         |..+++++|+ + +.          . ..++++. .+|+.+
T Consensus       196 ~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~-~~d~~~  263 (369)
T 3gwz_A          196 AAYD-FSGAATAVDIGGGRGSLMAAVLDAF---------PGLRGTLLER-PPVAEEARELLTGRGLADRCEIL-PGDFFE  263 (369)
T ss_dssp             HHSC-CTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE-ECCTTT
T ss_pred             HhCC-CccCcEEEEeCCCccHHHHHHHHHC---------CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEe-ccCCCC
Confidence            3443 3567899999999999999999886         6679999999 5 21          1 2468888 999875


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +         ++. .||+|++....     +.++.    ..+..+++.+.+.|+|||.+++..
T Consensus       264 ~---------~p~-~~D~v~~~~vl-----h~~~d----~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          264 T---------IPD-GADVYLIKHVL-----HDWDD----DDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             C---------CCS-SCSEEEEESCG-----GGSCH----HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             C---------CCC-CceEEEhhhhh-----ccCCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            2         334 79999985532     22222    234578899999999999998754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.05  E-value=1.3e-10  Score=95.00  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|..+..+++.++        +.++|+++|+++ +.          .+. +++++ .+|..+.     
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~--------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~-~gda~~~-----  134 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIP--------DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI-ESDAMLA-----  134 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSC--------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE-ESCHHHH-----
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH-----
Confidence            3568999999999999999999864        468999999996 21          222 47777 7875441     


Q ss_pred             HHHHh----CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTIL----KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~----~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +....    +.++||+|++|...        .      .....++.+.++|+|||.+++.
T Consensus       135 l~~l~~~~~~~~~fD~I~~d~~~--------~------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          135 LDNLLQGQESEGSYDFGFVDADK--------P------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             HHHHHHSTTCTTCEEEEEECSCG--------G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhccCCCCCcCEEEECCch--------H------HHHHHHHHHHHhcCCCeEEEEe
Confidence            11111    24689999998642        1      1245678889999999999885

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.05  E-value=2.8e-10  Score=98.13  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=73.5

Q ss_pred             hhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--C------CCCCeEEecCCCCChhH
Q psy1489          54 SKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--P------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        54 ~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--~------~~~~~~~~~~D~~~~~~  124 (229)
                      +.+. +.++.+|||+|||+|.++..+++..         |..+++++|++++ .  .      .+++++. .+|+.++  
T Consensus       178 ~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~-~~d~~~~--  244 (348)
T 3lst_A          178 RAGD-FPATGTVADVGGGRGGFLLTVLREH---------PGLQGVLLDRAEVVARHRLDAPDVAGRWKVV-EGDFLRE--  244 (348)
T ss_dssp             HHSC-CCSSEEEEEETCTTSHHHHHHHHHC---------TTEEEEEEECHHHHTTCCCCCGGGTTSEEEE-ECCTTTC--
T ss_pred             HhCC-ccCCceEEEECCccCHHHHHHHHHC---------CCCEEEEecCHHHhhcccccccCCCCCeEEE-ecCCCCC--
Confidence            3444 4567899999999999999999886         5678999998642 1  1      1247888 8998642  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                             ++  .||+|++....     +.++.    ..+..+|+++.++|||||++++..
T Consensus       245 -------~p--~~D~v~~~~vl-----h~~~d----~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          245 -------VP--HADVHVLKRIL-----HNWGD----EDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             -------CC--CCSEEEEESCG-----GGSCH----HHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             -------CC--CCcEEEEehhc-----cCCCH----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence                   33  89999985532     22222    234578999999999999998754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.05  E-value=7.5e-11  Score=93.13  Aligned_cols=94  Identities=10%  Similarity=-0.135  Sum_probs=65.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------CCCC--eEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------IDGA--VVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~~~~--~~~~~~D~~~~~~~~~i  128 (229)
                      +.+.++|||||||+|.++..++...         |..+|+|+|+++ |..       ..++  .+. ..|...       
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~---------p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~-~~d~~~-------  109 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNEN---------EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYR-FLNKES-------  109 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSS---------CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEE-EECCHH-------
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEE-Eecccc-------
Confidence            5678899999999999999987654         667999999997 311       1122  222 333321       


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                        ..++++||+|++.-           .+..++....++..+.+.|+|||.||-
T Consensus       110 --~~~~~~~DvVLa~k-----------~LHlL~~~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          110 --DVYKGTYDVVFLLK-----------MLPVLKQQDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             --HHTTSEEEEEEEET-----------CHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred             --cCCCCCcChhhHhh-----------HHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence              24578899999933           233334455667789999999999885

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.04  E-value=4.9e-10  Score=91.28  Aligned_cols=109  Identities=9%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhH
Q psy1489          57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDI  124 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~  124 (229)
                      .++++|.+|+|+|||+|.++..+++..         +..+|+|+|+++-           ..+. .+++. .+|..+.  
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~-~gD~l~~--   84 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMG---------YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVR-LANGLSA--   84 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTT---------CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE-ECSGGGG--
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECchhhc--
Confidence            446789999999999999999999863         5679999999971           1233 47888 8987663  


Q ss_pred             HHHHHHHhCC-CCccEEE-eCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         125 QDRLVTILKD-DKLDVVL-SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~-~~~D~V~-sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                             +.+ ..||+|+ +.|.          .    ++...++..+...|+++|+||+.-..  ....+.+.|...
T Consensus        85 -------~~~~~~~D~IviaGmG----------g----~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~~  139 (230)
T 3lec_A           85 -------FEEADNIDTITICGMG----------G----RLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAAN  139 (230)
T ss_dssp             -------CCGGGCCCEEEEEEEC----------H----HHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHT
T ss_pred             -------cccccccCEEEEeCCc----------h----HHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHHC
Confidence                   222 3699876 4331          1    23456778888999999999986543  467777777665

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.03  E-value=5.4e-11  Score=96.29  Aligned_cols=98  Identities=11%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-----CCCCeEEecCCCCCh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-----IDGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-----~~~~~~~~~~D~~~~  122 (229)
                      ++++.+|||+|||+|.++..+++..+..+   ..+.++|+++|+++ +.          .     ..++.+. .+|+.+.
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~  157 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKG---VDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV-EGDGRKG  157 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSC---CCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE-ESCGGGC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhccccc---CCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE-ECCcccC
Confidence            56789999999999999999998764000   00035999999997 21          0     3467788 8887652


Q ss_pred             hHHHHHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         123 DIQDRLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       123 ~~~~~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                               ++ .+.||+|+++....     .            +...+.++|+|||.+++.+..
T Consensus       158 ---------~~~~~~fD~I~~~~~~~-----~------------~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          158 ---------YPPNAPYNAIHVGAAAP-----D------------TPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ---------CGGGCSEEEEEECSCBS-----S------------CCHHHHHTEEEEEEEEEEESC
T ss_pred             ---------CCcCCCccEEEECCchH-----H------------HHHHHHHHhcCCCEEEEEEec
Confidence                     22 36899999977531     1            124578899999999997764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.03  E-value=9.9e-10  Score=95.39  Aligned_cols=96  Identities=10%  Similarity=0.093  Sum_probs=72.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +.++.+|||+|||+|.++..+++..         |..+++++|+..+    ...++++++ .+|+.++         ++.
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~~---------~p~  259 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY---------PTIKGVNFDLPHVISEAPQFPGVTHV-GGDMFKE---------VPS  259 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECHHHHTTCCCCTTEEEE-ECCTTTC---------CCC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC---------CCCeEEEecCHHHHHhhhhcCCeEEE-eCCcCCC---------CCC
Confidence            4567899999999999999999886         6679999999432    223578999 9998762         343


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .  |+|++....     +.+..    +.+..+|+.+.+.|+|||++++..
T Consensus       260 ~--D~v~~~~vl-----h~~~d----~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          260 G--DTILMKWIL-----HDWSD----QHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             C--SEEEEESCG-----GGSCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             C--CEEEehHHh-----ccCCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            3  999985532     22222    345678999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.03  E-value=1.7e-10  Score=94.03  Aligned_cols=100  Identities=12%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|.++..+++..+        +.++|+++|+++ +.          ... .+.++ .+|+.+.  ...
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~-~~d~~~~--~~~  127 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALP--------EDGKILCCDVSEEWTNVARKYWKENGLENKIFLK-LGSALET--LQV  127 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSC--------TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE-ESCHHHH--HHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE-ECCHHHH--HHH
Confidence            4678999999999999999998863        357999999997 21          122 37777 7775431  111


Q ss_pred             HHH---------HhCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVT---------ILKD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~---------~~~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +..         .+++  +.||+|+++...        +      .....+..+.++|+|||.+++..
T Consensus       128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~--------~------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          128 LIDSKSAPSWASDFAFGPSSIDLFFLDADK--------E------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHHCSSCCGGGTTTCCSTTCEEEEEECSCG--------G------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHhhcccccccccccCCCCCcCEEEEeCCH--------H------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            110         0222  689999997531        1      12356788999999999999854

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.03  E-value=2.7e-09  Score=92.87  Aligned_cols=109  Identities=11%  Similarity=0.064  Sum_probs=74.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|||+| |+|.++..++...         +.++|+|+|+++ |.          .+.+++++ ++|+.+.     +.
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~---------~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~-~~D~~~~-----l~  235 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSG---------LPKRIAVLDIDERLTKFIEKAANEIGYEDIEIF-TFDLRKP-----LP  235 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHT---------CCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEE-CCCTTSC-----CC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-EChhhhh-----ch
Confidence            578999999 9999999988763         457999999996 21          23368899 9998762     00


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEE-EEeecC-CCCh---HHHHHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC-LIKIWD-GRNR---PQLEESIT  198 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~-v~~~~~-~~~~---~~~~~~l~  198 (229)
                      . ..++.||+|++|++..        ..   . ...++..+.++|+|||++ ++.+.. ....   ..+.+.+.
T Consensus       236 ~-~~~~~fD~Vi~~~p~~--------~~---~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~  296 (373)
T 2qm3_A          236 D-YALHKFDTFITDPPET--------LE---A-IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLL  296 (373)
T ss_dssp             T-TTSSCBSEEEECCCSS--------HH---H-HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred             h-hccCCccEEEECCCCc--------hH---H-HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHH
Confidence            0 0135899999987531        11   1 267889999999999955 554443 1333   34445554

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.02  E-value=6e-10  Score=95.87  Aligned_cols=108  Identities=18%  Similarity=0.188  Sum_probs=76.8

Q ss_pred             hhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCC
Q psy1489          51 EIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDF  119 (229)
Q Consensus        51 ~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~  119 (229)
                      ++...+.+.+.+.+|||+|||+|.++..+++..         |..+++++|+..+.          .+ .+++++ .+|+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~-~~d~  238 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH---------PQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFF-EKNL  238 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC---------TTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEE-ECCT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC---------CCCeEEEEECHHHHHHHHHHHHhcCCCCceEEE-eCCc
Confidence            344455533337899999999999999999886         56799999994331          11 248888 9998


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+...       +.++.||+|++....     +.++.    ..+..+++.+.++|+|||.+++..
T Consensus       239 ~~~~~-------~~~~~~D~v~~~~vl-----h~~~~----~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          239 LDARN-------FEGGAADVVMLNDCL-----HYFDA----REAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             TCGGG-------GTTCCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCcc-------cCCCCccEEEEeccc-----ccCCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            87420       135679999995532     22222    235678999999999999998754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.01  E-value=1.2e-09  Score=96.69  Aligned_cols=98  Identities=13%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C---C--------------C--CCCCeEEecCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I---Y--------------P--IDGAVVLSKCD  118 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~---~--------------~--~~~~~~~~~~D  118 (229)
                      +.++.+|||||||+|.++..+++..         +..+|+|+|+++ +   .              .  ..+++++ .+|
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~---------g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i-~gD  309 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALEC---------GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS-LKK  309 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH---------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE-ESS
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE-EcC
Confidence            4678999999999999999999876         345899999986 2   1              1  3467777 765


Q ss_pred             CC-ChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         119 FT-QPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       119 ~~-~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .. +...   +..  ....||+|+++...     .  .     .....+|.++.++|||||.+++.
T Consensus       310 ~~~~~~~---~~~--~~~~FDvIvvn~~l-----~--~-----~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          310 SFVDNNR---VAE--LIPQCDVILVNNFL-----F--D-----EDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             CSTTCHH---HHH--HGGGCSEEEECCTT-----C--C-----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccc---ccc--ccCCCCEEEEeCcc-----c--c-----ccHHHHHHHHHHhCCCCeEEEEe
Confidence            43 2111   111  13579999986432     0  0     11235678899999999999875

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.01  E-value=2e-09  Score=90.08  Aligned_cols=116  Identities=21%  Similarity=0.146  Sum_probs=72.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeC-CC-CC------------C---C-----CCCeEEecC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDK-LP-IY------------P---I-----DGAVVLSKC  117 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~-~~-~~------------~---~-----~~~~~~~~~  117 (229)
                      .++.+|||||||+|.++..+++.          +..+|+|+|+ ++ +.            .   +     .++.+. ..
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~----------~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~-~~  146 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA----------GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV-PY  146 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT----------TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE-EC
T ss_pred             cCCCeEEEecccccHHHHHHHHc----------CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE-Ee
Confidence            46789999999999999988764          2359999999 65 20            1   1     245565 56


Q ss_pred             CCCChhHHHHHHHHhCCCCccEEEe-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHccc---C--CCEEEEeecCC----
Q psy1489         118 DFTQPDIQDRLVTILKDDKLDVVLS-DMAPNATGMREMDHDLITQLAIAVIRFAVTYSK---P--GADCLIKIWDG----  187 (229)
Q Consensus       118 D~~~~~~~~~i~~~~~~~~~D~V~s-d~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk---p--gG~~v~~~~~~----  187 (229)
                      |+.+..  ..+...+.++.||+|++ |...     +.       .....++..+.++|+   |  ||.+++..-..    
T Consensus       147 ~~~~~~--~~~~~~~~~~~fD~Ii~~dvl~-----~~-------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~  212 (281)
T 3bzb_A          147 RWGDSP--DSLQRCTGLQRFQVVLLADLLS-----FH-------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHL  212 (281)
T ss_dssp             CTTSCT--HHHHHHHSCSSBSEEEEESCCS-----CG-------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----
T ss_pred             cCCCcc--HHHHhhccCCCCCEEEEeCccc-----Ch-------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeeccc
Confidence            655421  11222224678999997 4321     11       113467788899999   9  99877632221    


Q ss_pred             -CChHHHHHHHHhh
Q psy1489         188 -RNRPQLEESITRF  200 (229)
Q Consensus       188 -~~~~~~~~~l~~~  200 (229)
                       .....+++.++..
T Consensus       213 ~~~~~~~~~~l~~~  226 (281)
T 3bzb_A          213 AERDLAFFRLVNAD  226 (281)
T ss_dssp             ---CTHHHHHHHHS
T ss_pred             chhHHHHHHHHHhc
Confidence             1245677767664

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.01  E-value=8.7e-10  Score=90.52  Aligned_cols=110  Identities=12%  Similarity=0.054  Sum_probs=79.3

Q ss_pred             CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhH
Q psy1489          57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDI  124 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~  124 (229)
                      .++++|.+|||+|||+|.++..+++..         +..+|+|+|+++-           ..+. .+++. .+|..+.  
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~---------~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~-~gD~l~~--   84 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQ---------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVR-KGNGLAV--   84 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE-ECSGGGG--
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-ecchhhc--
Confidence            446789999999999999999999863         5679999999971           1233 37788 8887652  


Q ss_pred             HHHHHHHhCCC-CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDD-KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~-~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                             +.+. .||+|++.+.    |     .    .+...++..+...|+++|+||+.-..  ....+.+.|...
T Consensus        85 -------~~~~~~~D~Iviagm----G-----g----~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~~~  139 (244)
T 3gnl_A           85 -------IEKKDAIDTIVIAGM----G-----G----TLIRTILEEGAAKLAGVTKLILQPNI--AAWQLREWSEQN  139 (244)
T ss_dssp             -------CCGGGCCCEEEEEEE----C-----H----HHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHH
T ss_pred             -------cCccccccEEEEeCC----c-----h----HHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHHHC
Confidence                   2233 5998875221    1     1    23456788899999999999986543  467777777665

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.00  E-value=6.6e-11  Score=94.56  Aligned_cols=93  Identities=14%  Similarity=0.054  Sum_probs=66.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|..+..+++..+        +.++|+++|+++ +.          .+ ..++++ .+|..+      
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~------  119 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAIS--------ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQ-VGDPLG------  119 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSC--------TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEE-ESCHHH------
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEE-EecHHH------
Confidence            3568999999999999999998753        367999999997 21          11 246777 777543      


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+ ++ ||+|++|...       .+       ....+..+.++|+|||.+++.
T Consensus       120 ~~~~~-~~-fD~v~~~~~~-------~~-------~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          120 IAAGQ-RD-IDILFMDCDV-------FN-------GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             HHTTC-CS-EEEEEEETTT-------SC-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             HhccC-CC-CCEEEEcCCh-------hh-------hHHHHHHHHHhcCCCeEEEEE
Confidence            11112 35 9999998532       11       235788899999999999874

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.00  E-value=4.8e-10  Score=98.39  Aligned_cols=110  Identities=19%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC-C-CCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI-D-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~-~-~~~~~~~~D~~~~~~~~  126 (229)
                      .++.+|||+|||+|+++..++..          ...+|+|+|+++ +          ..+ . +++++ .+|+.+.    
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~----------g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~-~~D~~~~----  283 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMG----------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV-RDDVFKL----  283 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE-ESCHHHH----
T ss_pred             hCCCeEEEeeccCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEE-ECCHHHH----
Confidence            46889999999999999999875          236999999996 1          123 3 67788 8886552    


Q ss_pred             HHHHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         127 RLVTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       127 ~i~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                       +... ..+..||+|++|++.........  ..........+..+.++|+|||.+++.....
T Consensus       284 -~~~~~~~~~~fD~Ii~dpP~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          284 -LRTYRDRGEKFDVIVMDPPKFVENKSQL--MGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             -HHHHHHTTCCEEEEEECCSSTTTCSSSS--SCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             -HHHHHhcCCCCCEEEECCCCCCCChhHH--HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence             1111 12468999999976321111000  0001123467788999999999999876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.00  E-value=8.2e-10  Score=95.23  Aligned_cols=95  Identities=13%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +.++.+|||+|||+|.++..+++..         |..+++++|+ + +    ...++++++ .+|+.+.         ++
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~v~~~-~~d~~~~---------~p  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF---------PKLKCIVFDR-PQVVENLSGSNNLTYV-GGDMFTS---------IP  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEEC-HHHHTTCCCBTTEEEE-ECCTTTC---------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC---------CCCeEEEeeC-HHHHhhcccCCCcEEE-eccccCC---------CC
Confidence            4567899999999999999999876         5679999999 5 2    123568888 8998652         33


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC---CCEEEEee
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP---GADCLIKI  184 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~~v~~~  184 (229)
                        .||+|++....     +.++.    ..+..+++.+.++|+|   ||++++..
T Consensus       246 --~~D~v~~~~~l-----h~~~d----~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          246 --NADAVLLKYIL-----HNWTD----KDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             --CCSEEEEESCG-----GGSCH----HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             --CccEEEeehhh-----ccCCH----HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence              39999996543     22222    2345789999999999   99998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.00  E-value=3.1e-09  Score=88.34  Aligned_cols=126  Identities=11%  Similarity=-0.051  Sum_probs=83.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C---------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P---------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~---------~~~~~~~~~~D~~~~~~  124 (229)
                      ..+.+|||+|||+|..+..+++.          + .+|+++|+++ +.     .         .++++++ .+|..+.  
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~----------~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~-~~D~~~~--  136 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY----------D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-KQLLDLD--  136 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS----------S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEE-SSGGGSC--
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC----------C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEE-echHHHH--
Confidence            34689999999999998887765          3 6999999996 21     1         1346677 7765541  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-C---hHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-N---RPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~---~~~~~~~l~~~  200 (229)
                             +  ++||+|++|...         ..       ..++.+.+.|+|||.+++...... .   ...+...++..
T Consensus       137 -------~--~~fD~Ii~d~~d---------p~-------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  191 (262)
T 2cmg_A          137 -------I--KKYDLIFCLQEP---------DI-------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV  191 (262)
T ss_dssp             -------C--CCEEEEEESSCC---------CH-------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT
T ss_pred             -------H--hhCCEEEECCCC---------hH-------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh
Confidence                   1  679999998531         11       167789999999999998653321 2   34455667777


Q ss_pred             CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         201 YSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       201 F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                      |..+..+.....- ...-.|++|.+
T Consensus       192 F~~~~~~~~~vP~-~g~~~~~~as~  215 (262)
T 2cmg_A          192 FSVAMPFVAPLRI-LSNKGYIYASF  215 (262)
T ss_dssp             CSEEEEECCTTCT-TCCEEEEEEES
T ss_pred             CCceEEEEEccCC-CcccEEEEeeC
Confidence            9887766532111 33344556653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.99  E-value=3.1e-10  Score=102.07  Aligned_cols=96  Identities=21%  Similarity=0.275  Sum_probs=68.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++.          +..+|+|+|++++.          .+ .+++++ .+|+.+..     
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~----------~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~-~~d~~~~~-----  220 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA----------GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVI-PGKVEEVS-----  220 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT----------TCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEE-ESCTTTCC-----
T ss_pred             cCCCEEEEecCcccHHHHHHHHc----------CCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEE-ECchhhCc-----
Confidence            36789999999999999988874          45699999999731          22 468888 99988731     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         + .++||+|+++.+.         .....+.....+..+.++|+|||.+++.+
T Consensus       221 ---~-~~~fD~Ivs~~~~---------~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          221 ---L-PEQVDIIISEPMG---------YMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             ---C-SSCEEEEECCCCH---------HHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             ---c-CCCeEEEEEeCch---------HhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence               2 3579999996531         11111223445667889999999998543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.98  E-value=2e-11  Score=99.49  Aligned_cols=91  Identities=19%  Similarity=-0.001  Sum_probs=62.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++.+|||+|||+|.++..+++..           .+|+|+|+++ +.          .+ +++.++ .+|+.+.      
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~------  139 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-----------MRVIAIDIDPVKIALARNNAEVYGIADKIEFI-CGDFLLL------  139 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE-ESCHHHH------
T ss_pred             CCCEEEECccccCHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEE-ECChHHh------
Confidence            78999999999999999998752           6999999997 21          12 367888 8886542      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         .+++.||+|+++.+......  .         ...+..+.++|+|||.+++.
T Consensus       140 ---~~~~~~D~v~~~~~~~~~~~--~---------~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          140 ---ASFLKADVVFLSPPWGGPDY--A---------TAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             ---GGGCCCSEEEECCCCSSGGG--G---------GSSSBCTTTSCSSCHHHHHH
T ss_pred             ---cccCCCCEEEECCCcCCcch--h---------hhHHHHHHhhcCCcceeHHH
Confidence               24578999999876422111  0         11233456667777765543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.98  E-value=2.4e-10  Score=93.02  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++.+|||+|||+|..+..+++.++        +.++|+++|+++ +.          .+ ..+.++ .+|+.+.     
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~--------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~-~~d~~~~-----  136 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLP--------PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR-LGPALAT-----  136 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE-ESCHHHH-----
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH-----
Confidence            3578999999999999999998763        357999999997 21          12 246777 7775431     


Q ss_pred             HHHHh-CC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTIL-KD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~-~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.... .+  +.||+|++|...              ......+..+.++|+|||.+++.
T Consensus       137 l~~l~~~~~~~~fD~V~~d~~~--------------~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          137 LEQLTQGKPLPEFDLIFIDADK--------------RNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             HHHHHTSSSCCCEEEEEECSCG--------------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHhcCCCCCcCEEEECCCH--------------HHHHHHHHHHHHHcCCCeEEEEe
Confidence            22221 12  689999998642              11245678899999999999985

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.96  E-value=2.7e-10  Score=92.02  Aligned_cols=91  Identities=21%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +.        ...++.++ .+|+.+..      
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~-~~d~~~~~------  129 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-----------DKVVSVEINEKMYNYASKLLSYYNNIKLI-LGDGTLGY------  129 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEEESCHHHHHHHHHHHTTCSSEEEE-ESCGGGCC------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-----------CEEEEEeCCHHHHHHHHHHHhhcCCeEEE-ECCccccc------
Confidence            4678899999999999999998863           5999999996 21        11167888 88876511      


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                        ..+++||+|+++....     ..            ...+.++|+|||.+++.+..
T Consensus       130 --~~~~~fD~v~~~~~~~-----~~------------~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          130 --EEEKPYDRVVVWATAP-----TL------------LCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             --GGGCCEEEEEESSBBS-----SC------------CHHHHHTEEEEEEEEEEECS
T ss_pred             --ccCCCccEEEECCcHH-----HH------------HHHHHHHcCCCcEEEEEEcC
Confidence              1246899999976531     11            12478899999999987644

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.96  E-value=2.9e-10  Score=92.52  Aligned_cols=92  Identities=17%  Similarity=0.327  Sum_probs=67.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..         + ++|+++|+++ +          ..+.++.+. .+|+...     
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~---------~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~-----  152 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIV---------K-TDVYTIERIPELVEFAKRNLERAGVKNVHVI-LGDGSKG-----  152 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHH---------C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ESCGGGC-----
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHh---------C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-ECCcccC-----
Confidence            4578899999999999999999886         4 6999999996 1          123467788 8886221     


Q ss_pred             HHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         128 LVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       128 i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                          ++ ...||+|+++....     ..            ...+.+.|+|||.+++.+...
T Consensus       153 ----~~~~~~fD~Ii~~~~~~-----~~------------~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          153 ----FPPKAPYDVIIVTAGAP-----KI------------PEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             ----CGGGCCEEEEEECSBBS-----SC------------CHHHHHTEEEEEEEEEEECSS
T ss_pred             ----CCCCCCccEEEECCcHH-----HH------------HHHHHHhcCCCcEEEEEEecC
Confidence                22 23599999976531     11            124788999999999977543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.96  E-value=4.6e-10  Score=105.51  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----C-----------CCCCCeEEecCCCCCh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----Y-----------PIDGAVVLSKCDFTQP  122 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~-----------~~~~~~~~~~~D~~~~  122 (229)
                      .++.+|||||||+|.++..+++..+        +..+|+|+|+++ |     .           ..+++.++ ++|+.+.
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~--------p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi-qGDa~dL  790 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPT--------SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY-DGSILEF  790 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCC--------CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE-ESCTTSC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCC--------CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE-ECchHhC
Confidence            3688999999999999999887642        346999999996 2     1           23468888 9999874


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .        +.++.||+|++....     +..+.    .....++.++.++|||| .+++.+
T Consensus       791 p--------~~d~sFDlVV~~eVL-----eHL~d----p~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          791 D--------SRLHDVDIGTCLEVI-----EHMEE----DQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             C--------TTSCSCCEEEEESCG-----GGSCH----HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             C--------cccCCeeEEEEeCch-----hhCCh----HHHHHHHHHHHHHcCCC-EEEEEe
Confidence            2        346789999996543     11111    22346788999999999 776654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.95  E-value=3.3e-09  Score=90.55  Aligned_cols=92  Identities=11%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+|||+|||+|.++..+++..         |..+++++|+ + +..           ..+++++ .+|+.++        
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~--------  229 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAE---------PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLV-GGDMLQE--------  229 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHC---------TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEE-ESCTTTC--------
T ss_pred             CEEEEeCCCchHHHHHHHHHC---------CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEe-cCCCCCC--------
Confidence            899999999999999999886         5679999999 6 321           1358888 8998762        


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ++ +.||+|++....     +.++.    ..+..+++.+.+.|+|||.+++..
T Consensus       230 -~~-~~~D~v~~~~vl-----~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          230 -VP-SNGDIYLLSRII-----GDLDE----AASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             -CC-SSCSEEEEESCG-----GGCCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -CC-CCCCEEEEchhc-----cCCCH----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence             33 579999986532     22222    234578899999999999998764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.95  E-value=3.1e-09  Score=88.64  Aligned_cols=107  Identities=19%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             CeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C--CCCCeEEecCCCCChhHHHHHH
Q psy1489          63 LKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P--IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        63 ~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~--~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+|||||||+  ++.+..++++..        |.++|++||.++ |.        .  ..++.++ ++|+.+....  +.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~--------P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v-~aD~~~~~~~--l~  148 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVA--------PESRVVYVDNDPIVLTLSQGLLASTPEGRTAYV-EADMLDPASI--LD  148 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHC--------TTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEE-ECCTTCHHHH--HT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHC--------CCCEEEEEeCChHHHHHHHHHhccCCCCcEEEE-EecccChhhh--hc
Confidence            6899999997  555666666654        778999999997 31        1  1247889 9999986421  00


Q ss_pred             HHhCCCCcc-----EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         130 TILKDDKLD-----VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       130 ~~~~~~~~D-----~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      .......||     .|++++....    ..++    +....++..+.+.|+|||.|++..+...
T Consensus       149 ~~~~~~~~D~~~p~av~~~avLH~----l~d~----~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          149 APELRDTLDLTRPVALTVIAIVHF----VLDE----DDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             CHHHHTTCCTTSCCEEEEESCGGG----SCGG----GCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             ccccccccCcCCcchHHhhhhHhc----CCch----hhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            000012344     5667654311    1111    1134678889999999999999876643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.95  E-value=3.6e-10  Score=99.49  Aligned_cols=124  Identities=10%  Similarity=0.043  Sum_probs=80.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++ |.   .-.++... ... ........+.  +++
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~-g----------~~v~gvD~s~~~~~~a~~~~~~~~-~~~-~~~~~~~~l~--~~~  169 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEA-G----------VRHLGFEPSSGVAAKAREKGIRVR-TDF-FEKATADDVR--RTE  169 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHT-T----------CEEEEECCCHHHHHHHHTTTCCEE-CSC-CSHHHHHHHH--HHH
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-C----------CcEEEECCCHHHHHHHHHcCCCcc-eee-echhhHhhcc--cCC
Confidence            457889999999999999998875 2          4999999997 21   11234333 222 2222222222  346


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-------------------CCChHHHHH
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-------------------GRNRPQLEE  195 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-------------------~~~~~~~~~  195 (229)
                      ++||+|++.....        +.   .....+++++.++|||||.+++....                   .....++..
T Consensus       170 ~~fD~I~~~~vl~--------h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  238 (416)
T 4e2x_A          170 GPANVIYAANTLC--------HI---PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQG  238 (416)
T ss_dssp             CCEEEEEEESCGG--------GC---TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHH
T ss_pred             CCEEEEEECChHH--------hc---CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHH
Confidence            7899999966431        11   12457889999999999999986532                   012456777


Q ss_pred             HHHhh-CCeeEEEc
Q psy1489         196 SITRF-YSQVKILK  208 (229)
Q Consensus       196 ~l~~~-F~~v~~~k  208 (229)
                      .++.. |..+.+..
T Consensus       239 ll~~aGf~~~~~~~  252 (416)
T 4e2x_A          239 MAQRCGFELVDVQR  252 (416)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHcCCEEEEEEE
Confidence            77665 65555443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.95  E-value=1.5e-09  Score=94.04  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=72.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ....+|||+|||+|.++..+++..         |..+++++|+..+.          .+ .+++++ .+|+.+..     
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-----  242 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN---------KEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGH-GANLLDRD-----  242 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS---------TTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEE-ECCCCSSS-----
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC---------CCCEEEEEeCHHHHHHHHHHHHhcCcccceEEE-EccccccC-----
Confidence            356899999999999999999886         66799999983221          11 358888 99988731     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ..++ +.||+|++....     +.++.    ..+..+|+.+.++|+|||++++..
T Consensus       243 -~~~p-~~~D~v~~~~vl-----h~~~~----~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          243 -VPFP-TGFDAVWMSQFL-----DCFSE----EEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             -CCCC-CCCSEEEEESCS-----TTSCH----HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             -CCCC-CCcCEEEEechh-----hhCCH----HHHHHHHHHHHHhcCCCcEEEEEe
Confidence             0033 679999986543     22222    234578899999999999998744

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.94  E-value=1.8e-10  Score=92.88  Aligned_cols=102  Identities=15%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-----CCCCeEEecCCCCCh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-----IDGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-----~~~~~~~~~~D~~~~  122 (229)
                      ++++.+|||+|||+|.++..+++..+.    ...+.++|+|+|+++ +.          .     ..++.++ .+|+.+.
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~----~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~  152 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNV----LENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII-HKNIYQV  152 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTT----TTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE-ECCGGGC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcc----cCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE-ECChHhc
Confidence            567899999999999999999987520    000236999999996 21          1     3468888 8887652


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ... ..   ...++||+|+++....                 .++..+.++|+|||.+++.+..
T Consensus       153 ~~~-~~---~~~~~fD~I~~~~~~~-----------------~~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          153 NEE-EK---KELGLFDAIHVGASAS-----------------ELPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CHH-HH---HHHCCEEEEEECSBBS-----------------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred             ccc-cC---ccCCCcCEEEECCchH-----------------HHHHHHHHhcCCCcEEEEEEcc
Confidence            100 00   1246799999977531                 1235578899999999987654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.94  E-value=1.7e-09  Score=85.49  Aligned_cols=106  Identities=19%  Similarity=0.129  Sum_probs=67.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++.+|||+|||+|.++..+++. +         ..+|+|+|+++ +.     ...+++++ ++|+.+          ++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~---------~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~d~~~----------~~  108 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-G---------AESVTAFDIDPDAIETAKRNCGGVNFM-VADVSE----------IS  108 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-T---------BSEEEEEESCHHHHHHHHHHCTTSEEE-ECCGGG----------CC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-C---------CCEEEEEECCHHHHHHHHHhcCCCEEE-ECcHHH----------CC
Confidence            46789999999999999998875 2         35899999997 21     12378888 898776          22


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                       +.||+|++|++.....     .    ......+..+.+.|  |+.+++ . .......+.+.+...
T Consensus       109 -~~~D~v~~~~p~~~~~-----~----~~~~~~l~~~~~~~--g~~~~~-~-~~~~~~~~~~~~~~~  161 (200)
T 1ne2_A          109 -GKYDTWIMNPPFGSVV-----K----HSDRAFIDKAFETS--MWIYSI-G-NAKARDFLRREFSAR  161 (200)
T ss_dssp             -CCEEEEEECCCC----------------CHHHHHHHHHHE--EEEEEE-E-EGGGHHHHHHHHHHH
T ss_pred             -CCeeEEEECCCchhcc-----C----chhHHHHHHHHHhc--CcEEEE-E-cCchHHHHHHHHHHC
Confidence             6899999987642111     0    11235677777777  443333 2 223334445555543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.92  E-value=5.6e-09  Score=82.80  Aligned_cols=108  Identities=19%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC---C-CCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI---D-GAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~---~-~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++.+|||+|||+|.++..+++. +         ..+|+|+|+++ +.     ..   . ++.++ .+|+.+        
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~-~---------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~d~~~--------  108 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLL-G---------AKEVICVEVDKEAVDVLIENLGEFKGKFKVF-IGDVSE--------  108 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-T---------CSEEEEEESCHHHHHHHHHHTGGGTTSEEEE-ESCGGG--------
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHc-C---------CCEEEEEECCHHHHHHHHHHHHHcCCCEEEE-ECchHH--------
Confidence            46789999999999999998875 2         35899999996 21     01   1 57888 888765        


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                        + +..||+|++|++...... ..        ....+..+.++|  ||.+++.+........+.+.+...
T Consensus       109 --~-~~~~D~v~~~~p~~~~~~-~~--------~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~  165 (207)
T 1wy7_A          109 --F-NSRVDIVIMNPPFGSQRK-HA--------DRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEH  165 (207)
T ss_dssp             --C-CCCCSEEEECCCCSSSST-TT--------THHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHT
T ss_pred             --c-CCCCCEEEEcCCCccccC-Cc--------hHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHC
Confidence              2 248999999987532211 11        124566677777  554444321222233344555544

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.92  E-value=1.1e-09  Score=95.55  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=75.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      ..++.+|||+|||+|.++..++...         +.++|+|+|+++ |.          .+ .++++. ++|+.+..   
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~---------~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~-~~D~~~~~---  281 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRR---------YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFI-QGDATQLS---  281 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTT---------CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEE-ECCGGGGG---
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEE-ECChhhCC---
Confidence            4678999999999999999988763         445899999997 21          22 357888 99987732   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                           .+++.||+|++|++..   .+..+......+...++..+.++|  ||.+++...   +...+.+.+..
T Consensus       282 -----~~~~~fD~Ii~npPyg---~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---~~~~~~~~~~~  341 (373)
T 3tm4_A          282 -----QYVDSVDFAISNLPYG---LKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---EKKAIEEAIAE  341 (373)
T ss_dssp             -----GTCSCEEEEEEECCCC---------CCHHHHHHHHHHHHHHHE--EEEEEEEES---CHHHHHHHHHH
T ss_pred             -----cccCCcCEEEECCCCC---cccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---CHHHHHHHHHH
Confidence                 3457899999998752   211111112233467788888888  555555333   23444455544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.92  E-value=9.5e-09  Score=88.80  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=72.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.+..+|||+|||+|.++..++++.         |..+++..|+-++.          ..++++++ .+|+.+.      
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~---------p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~-~gD~~~~------  240 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLY---------PGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQ-EGDFFKD------  240 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHC---------SSCEEEEEECHHHHHHHHHHSCC--CCSEEEE-ESCTTTS------
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhC---------CCceeEeccCHHHHHHHHHhhhhcccCceeee-cCccccC------
Confidence            3556899999999999999999987         67789999974321          13578899 9998762      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          +...+|+|++...     .++++.    +.+..+|+.+.+.|+|||++++..
T Consensus       241 ----~~~~~D~~~~~~v-----lh~~~d----~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          241 ----PLPEADLYILARV-----LHDWAD----GKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             ----CCCCCSEEEEESS-----GGGSCH----HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ----CCCCceEEEeeee-----cccCCH----HHHHHHHHHHHhhCCCCCEEEEEE
Confidence                1235799998443     233332    346678999999999999988754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.90  E-value=9.9e-10  Score=88.21  Aligned_cols=113  Identities=18%  Similarity=0.217  Sum_probs=78.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      ++.+|||+|||+|.++..++.              . +|+|+++ +.   ...++.++ .+|+.+..        ++++.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~--------------~-~~vD~s~~~~~~a~~~~~~~~-~~d~~~~~--------~~~~~  102 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKI--------------K-IGVEPSERMAEIARKRGVFVL-KGTAENLP--------LKDES  102 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTC--------------C-EEEESCHHHHHHHHHTTCEEE-ECBTTBCC--------SCTTC
T ss_pred             CCCcEEEeCCCCCHHHHHHHH--------------H-hccCCCHHHHHHHHhcCCEEE-EcccccCC--------CCCCC
Confidence            388999999999999877532              2 8999987 21   11267888 88877632        44678


Q ss_pred             ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-----------------------CChHHH
Q psy1489         137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-----------------------RNRPQL  193 (229)
Q Consensus       137 ~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-----------------------~~~~~~  193 (229)
                      ||+|++......     .      .....++..+.++|+|||.+++..+..                       ....++
T Consensus       103 fD~v~~~~~l~~-----~------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (219)
T 1vlm_A          103 FDFALMVTTICF-----V------DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEEL  171 (219)
T ss_dssp             EEEEEEESCGGG-----S------SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHH
T ss_pred             eeEEEEcchHhh-----c------cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHH
Confidence            999999654311     1      113467888999999999999875432                       134667


Q ss_pred             HHHHHhh-CCeeEEEc
Q psy1489         194 EESITRF-YSQVKILK  208 (229)
Q Consensus       194 ~~~l~~~-F~~v~~~k  208 (229)
                      .+.+++. |..+.+..
T Consensus       172 ~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          172 MDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             HHHHHHTTCEEEEEEE
T ss_pred             HHHHHHCCCeEEEEec
Confidence            7777776 76666554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.90  E-value=3.4e-09  Score=91.40  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=71.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..         +..+++++|+..+.          .+ .+++++ .+|+.+.     
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~-----  245 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRA---------PHVSATVLEMAGTVDTARSYLKDEGLSDRVDVV-EGDFFEP-----  245 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEE-ECCTTSC-----
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhC---------CCCEEEEecCHHHHHHHHHHHHhcCCCCceEEE-eCCCCCC-----
Confidence            3567899999999999999999875         56799999982221          12 268888 9998762     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          ++. .||+|++....     +..+.    ..+..+++.+.++|+|||.+++..+
T Consensus       246 ----~~~-~~D~v~~~~vl-----~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~  289 (360)
T 1tw3_A          246 ----LPR-KADAIILSFVL-----LNWPD----HDAVRILTRCAEALEPGGRILIHER  289 (360)
T ss_dssp             ----CSS-CEEEEEEESCG-----GGSCH----HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ----CCC-CccEEEEcccc-----cCCCH----HHHHHHHHHHHHhcCCCcEEEEEEE
Confidence                333 49999986542     12221    2245788999999999999987543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.88  E-value=4.5e-09  Score=90.41  Aligned_cols=123  Identities=17%  Similarity=0.213  Sum_probs=80.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|+++..+++......    +...+++|+|+++ +.          .+ .+.+. .+|....      
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~----~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~-~~D~l~~------  196 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKG----DVDVHASGVDVDDLLISLALVGADLQRQ-KMTLL-HQDGLAN------  196 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTS----SCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEE-ESCTTSC------
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhc----CCCceEEEEECCHHHHHHHHHHHHhCCC-CceEE-ECCCCCc------
Confidence            3578999999999999999998874100    0116899999997 11          12 46777 8887653      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHH----------HHHHHHHHHHHHHHcccCCCEEEEee----cCCCChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDL----------ITQLAIAVIRFAVTYSKPGADCLIKI----WDGRNRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~----------~~~~~~~~l~~~~~~LkpgG~~v~~~----~~~~~~~~~~  194 (229)
                         .....||+|++|++...   ...+...          ........+..+.+.|+|||.+++.+    +.+.....+.
T Consensus       197 ---~~~~~fD~Ii~NPPfg~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir  270 (344)
T 2f8l_A          197 ---LLVDPVDVVISDLPVGY---YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVD  270 (344)
T ss_dssp             ---CCCCCEEEEEEECCCSE---ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHH
T ss_pred             ---cccCCccEEEECCCCCC---cCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHH
Confidence               23568999999987421   1100000          00011246788999999999998866    3455566777


Q ss_pred             HHHHhh
Q psy1489         195 ESITRF  200 (229)
Q Consensus       195 ~~l~~~  200 (229)
                      +.+...
T Consensus       271 ~~l~~~  276 (344)
T 2f8l_A          271 KFIKKN  276 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            766554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.87  E-value=1.6e-09  Score=90.60  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             CCCeeEeecCCCCc----hHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC----------------------
Q psy1489          61 PGLKVLDCGAAPGS----WSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI----------------------  108 (229)
Q Consensus        61 ~g~~VLDlGcGpG~----~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~----------------------  108 (229)
                      ++.+|+|+|||+|.    ++..+++..+..     ....+|+|+|+|+ |.     ..                      
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~-----~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~  179 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMA-----PGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT  179 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSC-----TTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccC-----CCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccc
Confidence            35799999999998    566666665300     0035899999996 20     10                      


Q ss_pred             --------------CCCeEEecCCCCChhHHHHHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHc
Q psy1489         109 --------------DGAVVLSKCDFTQPDIQDRLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTY  173 (229)
Q Consensus       109 --------------~~~~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~  173 (229)
                                    ..+.|. +.|+.+..        ++ .+.||+|+|....     ...+.    +....++..+.+.
T Consensus       180 ~~~~~~~~v~~~lr~~V~F~-~~dl~~~~--------~~~~~~fDlI~crnvl-----iyf~~----~~~~~vl~~~~~~  241 (274)
T 1af7_A          180 GPHEGLVRVRQELANYVEFS-SVNLLEKQ--------YNVPGPFDAIFCRNVM-----IYFDK----TTQEDILRRFVPL  241 (274)
T ss_dssp             TTSCSEEEECHHHHTTEEEE-ECCTTCSS--------CCCCCCEEEEEECSSG-----GGSCH----HHHHHHHHHHGGG
T ss_pred             cCCCCceeechhhcccCeEE-ecccCCCC--------CCcCCCeeEEEECCch-----HhCCH----HHHHHHHHHHHHH
Confidence                          135667 78877621        22 4689999994321     11122    3356889999999


Q ss_pred             ccCCCEEEEe
Q psy1489         174 SKPGADCLIK  183 (229)
Q Consensus       174 LkpgG~~v~~  183 (229)
                      |+|||.|++.
T Consensus       242 L~pgG~L~lg  251 (274)
T 1af7_A          242 LKPDGLLFAG  251 (274)
T ss_dssp             EEEEEEEEEC
T ss_pred             hCCCcEEEEE
Confidence            9999999874

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.86  E-value=3.6e-09  Score=91.42  Aligned_cols=96  Identities=10%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +.++.+|||+|||+|.++..++++.         |..+++++|+..+    ...+++.++ .+|+.++         ++ 
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~---------p~~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~~---------~~-  250 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIF---------PHLKCTVFDQPQVVGNLTGNENLNFV-GGDMFKS---------IP-  250 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHC---------TTSEEEEEECHHHHSSCCCCSSEEEE-ECCTTTC---------CC-
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHC---------CCCeEEEeccHHHHhhcccCCCcEEE-eCccCCC---------CC-
Confidence            3467899999999999999999886         5679999999532    123568888 8998762         33 


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC---CCEEEEee
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP---GADCLIKI  184 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~~v~~~  184 (229)
                       .||+|++....     +.++.    ..+..+|+.+.++|+|   ||++++..
T Consensus       251 -~~D~v~~~~vl-----h~~~d----~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          251 -SADAVLLKWVL-----HDWND----EQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             -CCSEEEEESCG-----GGSCH----HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             -CceEEEEcccc-----cCCCH----HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence             49999996543     22222    2345789999999999   99998754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.80  E-value=1.9e-09  Score=88.40  Aligned_cols=98  Identities=11%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--------CCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..++++.           ++|+|+|+++ +..        .++++++ .+|+.+..      
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-----------~~v~~id~~~~~~~~a~~~~~~~~~v~~~-~~D~~~~~------   88 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-----------KQVTSIELDSHLFNLSSEKLKLNTRVTLI-HQDILQFQ------   88 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-----------SEEEESSSSCSSSSSSSCTTTTCSEEEEC-CSCCTTTT------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-----------CeEEEEECCHHHHHHHHHHhccCCceEEE-ECChhhcC------
Confidence            4578899999999999999999873           5999999997 321        1357788 89988732      


Q ss_pred             HHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHH------HHH----HHHHHcccCCCEEEEe
Q psy1489         130 TILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAI------AVI----RFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~------~~l----~~~~~~LkpgG~~v~~  183 (229)
                        ++ +++| .|++|.+...+.      ........      ..+    +.+.++|+|||.+.+.
T Consensus        89 --~~~~~~f-~vv~n~Py~~~~------~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           89 --FPNKQRY-KIVGNIPYHLST------QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             --CCCSSEE-EEEEECCSSSCH------HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             --cccCCCc-EEEEeCCccccH------HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence              23 2578 788887643221      11111111      223    6689999999987653

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.76  E-value=8.6e-09  Score=86.56  Aligned_cols=66  Identities=21%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +.++.+|||+|||+|.++..+++..           ++|+|+|+++ |.          .. ++++++ .+|+.+.    
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~D~~~~----   89 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKA-----------KKVVACELDPRLVAELHKRVQGTPVASKLQVL-VGDVLKT----   89 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-----------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE-ESCTTTS----
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-Ecceecc----
Confidence            3578899999999999999999873           5999999996 21          11 367888 9998863    


Q ss_pred             HHHHHhCCCCccEEEeCCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~  146 (229)
                            +-..||+|+++.+.
T Consensus        90 ------~~~~fD~vv~nlpy  103 (285)
T 1zq9_A           90 ------DLPFFDTCVANLPY  103 (285)
T ss_dssp             ------CCCCCSEEEEECCG
T ss_pred             ------cchhhcEEEEecCc
Confidence                  22379999998764

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.76  E-value=1e-08  Score=86.69  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=48.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..++++.           ++|+|+|+++ +          ...++++++ .+|+.+.     
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~-----------~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~-~~D~~~~-----  102 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLA-----------KKVITIDIDSRMISEVKKRCLYEGYNNLEVY-EGDAIKT-----  102 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTS-----------SEEEEECSCHHHHHHHHHHHHHTTCCCEEC-----CCSS-----
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHHcCCCceEEE-ECchhhC-----
Confidence            3578899999999999999988752           5999999996 2          123567888 8888772     


Q ss_pred             HHHHhCCCCccEEEeCCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~  146 (229)
                           +...||+|++|.+.
T Consensus       103 -----~~~~~D~Vv~n~py  116 (299)
T 2h1r_A          103 -----VFPKFDVCTANIPY  116 (299)
T ss_dssp             -----CCCCCSEEEEECCG
T ss_pred             -----CcccCCEEEEcCCc
Confidence                 23479999998754

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.69  E-value=1.6e-08  Score=88.29  Aligned_cols=91  Identities=14%  Similarity=-0.047  Sum_probs=65.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------C---------------CCCCCeEE
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------Y---------------PIDGAVVL  114 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~---------------~~~~~~~~  114 (229)
                      ++.+|||+|||+|.++..++.+.         +..+|+++|+++-           .               .+.+++++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~---------~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~  117 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALET---------PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVIN  117 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS---------SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEE
T ss_pred             CCCEEEECCCchhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEE
Confidence            57899999999999999999886         3468999999961           1               22336677


Q ss_pred             ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ++|+.+.     + ... .+.||+|+.|+..    .           ....+..+.+.|++||.+++.
T Consensus       118 -~~Da~~~-----~-~~~-~~~fD~I~lDP~~----~-----------~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          118 -HDDANRL-----M-AER-HRYFHFIDLDPFG----S-----------PMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             -ESCHHHH-----H-HHS-TTCEEEEEECCSS----C-----------CHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cCcHHHH-----H-Hhc-cCCCCEEEeCCCC----C-----------HHHHHHHHHHhcCCCCEEEEE
Confidence             7775542     1 112 4579999998632    1           124667788999999988764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.68  E-value=6.4e-09  Score=91.10  Aligned_cols=95  Identities=16%  Similarity=-0.040  Sum_probs=67.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC--CeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG--AVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~--~~~~~~~D~~~~~~~~  126 (229)
                      ++|.+|||++||+|.++..++.+.+        +..+|+++|+++.           ..+.+  ++++ .+|+.+.    
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~--------ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~-~~Da~~~----  117 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETS--------CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIH-GMEANFF----  117 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCS--------CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE-CSCHHHH----
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEE-eCCHHHH----
Confidence            4689999999999999999998753        2368999999961           13344  7777 7875441    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       +...+ .+.||+|+.|+.    +.           ....+..+.+.|+|||.+++..
T Consensus       118 -l~~~~-~~~fD~V~lDP~----g~-----------~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          118 -LRKEW-GFGFDYVDLDPF----GT-----------PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             -HHSCC-SSCEEEEEECCS----SC-----------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -HHHhh-CCCCcEEEECCC----cC-----------HHHHHHHHHHHhCCCCEEEEEe
Confidence             21012 457999999872    11           1235677888999999887754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.66  E-value=1.7e-08  Score=92.49  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=62.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||.|.++..+|++ |          +.|+|||+++ +.          ..-++.+. ++++.+      +
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~-g----------a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~-~~~~~~------~  126 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK-G----------ATIVGIDFQQENINVCRALAEENPDFAAEFR-VGRIEE------V  126 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHTSTTSEEEEE-ECCHHH------H
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC-C----------CEEEEECCCHHHHHHHHHHHHhcCCCceEEE-ECCHHH------H
Confidence            45679999999999999999975 3          6999999997 11          11246666 676544      3


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .....+++||+|+|-..        .+|......+ ..+....+.|+++|...+-.
T Consensus       127 ~~~~~~~~fD~v~~~e~--------~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          127 IAALEEGEFDLAIGLSV--------FHHIVHLHGI-DEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             HHHCCTTSCSEEEEESC--------HHHHHHHHCH-HHHHHHHHHHHHHSSEEEEE
T ss_pred             hhhccCCCccEEEECcc--------hhcCCCHHHH-HHHHHHHHHhccccceeeEE
Confidence            33355778999999332        3333222222 22333556677777654433

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.65  E-value=5.9e-08  Score=85.96  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=62.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.++.+|||+|||+|.++..+++..           .+|+|+|+++ +.          .+. +.++ .+|+.+.     
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-----------~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~-~~d~~~~-----  349 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-----------FNVKGFDSNEFAIEMARRNVEINNVD-AEFE-VASDREV-----  349 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHHHHHHTCC-EEEE-ECCTTTC-----
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHHcCCc-EEEE-ECChHHc-----
Confidence            4578899999999999999998752           5999999996 21          233 7888 9998772     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                          + ...||+|++|++-  .|.   +.        .++. ..+.|+|+|.+++..
T Consensus       350 ----~-~~~fD~Vv~dPPr--~g~---~~--------~~~~-~l~~l~p~givyvsc  387 (425)
T 2jjq_A          350 ----S-VKGFDTVIVDPPR--AGL---HP--------RLVK-RLNREKPGVIVYVSC  387 (425)
T ss_dssp             ----C-CTTCSEEEECCCT--TCS---CH--------HHHH-HHHHHCCSEEEEEES
T ss_pred             ----C-ccCCCEEEEcCCc--cch---HH--------HHHH-HHHhcCCCcEEEEEC
Confidence                2 2279999998752  121   11        1222 223489999988753

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.60  E-value=4.6e-07  Score=80.55  Aligned_cols=129  Identities=12%  Similarity=0.190  Sum_probs=76.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCC----CCCcEEEEEeCCC-C----------CCCC--CCeEEecCCCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSK----QPKGLVLSVDKLP-I----------YPID--GAVVLSKCDFTQ  121 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~----~~~~~v~gvD~~~-~----------~~~~--~~~~~~~~D~~~  121 (229)
                      ..++.+|||.|||+|++...+++++......++    .+..+++|+|+++ +          ..+.  .+.+. ++|...
T Consensus       169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~-~gD~l~  247 (445)
T 2okc_A          169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV-CEDSLE  247 (445)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE-ECCTTT
T ss_pred             CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEe-eCCCCC
Confidence            356789999999999999998887521000000    0124799999996 1          1222  45677 888765


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCccc----HHH--HHHHHHHHHHHHHHcccCCCEEEEee-----cCCCCh
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD----HDL--ITQLAIAVIRFAVTYSKPGADCLIKI-----WDGRNR  190 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d----~~~--~~~~~~~~l~~~~~~LkpgG~~v~~~-----~~~~~~  190 (229)
                      ..         ....||+|++|++..........    .+.  ........+..+.++|+|||++++.+     +.+...
T Consensus       248 ~~---------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~  318 (445)
T 2okc_A          248 KE---------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAG  318 (445)
T ss_dssp             SC---------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHH
T ss_pred             Cc---------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHH
Confidence            31         12489999999875322111000    000  00011256777889999999998765     233333


Q ss_pred             HHHHHHH
Q psy1489         191 PQLEESI  197 (229)
Q Consensus       191 ~~~~~~l  197 (229)
                      ..+.+.+
T Consensus       319 ~~iR~~L  325 (445)
T 2okc_A          319 ETIRKRL  325 (445)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4566544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.60  E-value=7.9e-08  Score=79.33  Aligned_cols=104  Identities=11%  Similarity=-0.029  Sum_probs=68.5

Q ss_pred             hhHhhhhhcC----ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------C--CCCeE
Q psy1489          48 KLLEIDSKIK----FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------I--DGAVV  113 (229)
Q Consensus        48 kl~~i~~~~~----~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~--~~~~~  113 (229)
                      .|..++..|.    .+.+..+|||||||+|-++..++...         +..+|+|+|+++ |..       .  ....+
T Consensus       115 RLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~---------p~a~y~a~DId~~~le~a~~~l~~~g~~~~~  185 (281)
T 3lcv_B          115 RLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLP---------AETVYIASDIDARLVGFVDEALTRLNVPHRT  185 (281)
T ss_dssp             HGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCC---------TTCEEEEEESBHHHHHHHHHHHHHTTCCEEE
T ss_pred             HhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCceE
Confidence            3444444433    34556899999999999998877653         678999999997 210       1  12345


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHH--HHHHHHHHHcccCCCEEEE
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA--IAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~--~~~l~~~~~~LkpgG~~v~  182 (229)
                      . ..|....         .+.+.+|+|++....           ..++..  ...+ ...+.|+++|.||-
T Consensus       186 ~-v~D~~~~---------~p~~~~DvaL~lkti-----------~~Le~q~kg~g~-~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          186 N-VADLLED---------RLDEPADVTLLLKTL-----------PCLETQQRGSGW-EVIDIVNSPNIVVT  234 (281)
T ss_dssp             E-ECCTTTS---------CCCSCCSEEEETTCH-----------HHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred             E-Eeeeccc---------CCCCCcchHHHHHHH-----------HHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence            5 6776542         457789999995532           122211  1334 78889999998875

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.58  E-value=6.8e-08  Score=83.93  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=62.4

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.+|||+|||+|.++..+++..           .+|+|+|+++ +          ..+.+++++ .+|+.+.     +..
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~-----------~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~-~~d~~~~-----~~~  276 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF-----------DRVLATEIAKPSVAAAQYNIAANHIDNVQII-RMAAEEF-----TQA  276 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS-----------SEEEEECCCHHHHHHHHHHHHHTTCCSEEEE-CCCSHHH-----HHH
T ss_pred             CCEEEEccCCCCHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHHcCCCceEEE-ECCHHHH-----HHH
Confidence            6789999999999999988632           5999999997 2          134578888 8887652     111


Q ss_pred             HhCC--------------CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         131 ILKD--------------DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       131 ~~~~--------------~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                       +.+              ..||+|+.|++-.  |.               ...+.+.|+++|.++.....
T Consensus       277 -~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--g~---------------~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          277 -MNGVREFNRLQGIDLKSYQCETIFVDPPRS--GL---------------DSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             -HSSCCCCTTGGGSCGGGCCEEEEEECCCTT--CC---------------CHHHHHHHTTSSEEEEEESC
T ss_pred             -HhhccccccccccccccCCCCEEEECcCcc--cc---------------HHHHHHHHhCCCEEEEEECC
Confidence             222              3799999987531  21               12355667789988765443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.57  E-value=9.8e-08  Score=78.24  Aligned_cols=67  Identities=15%  Similarity=0.226  Sum_probs=49.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..++++.           ++|+|+|+++ |        ...++++++ .+|+.+.+      
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~-~~D~~~~~------   89 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRC-----------NFVTAIEIDHKLCKTTENKLVDHDNFQVL-NKDILQFK------   89 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEECSCHHHHHHHHHHTTTCCSEEEE-CCCGGGCC------
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcC-----------CeEEEEECCHHHHHHHHHhhccCCCeEEE-EChHHhCC------
Confidence            3578899999999999999999873           5999999996 2        123578888 99887632      


Q ss_pred             HHhCC-CCccEEEeCCCC
Q psy1489         130 TILKD-DKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~-~~~D~V~sd~~~  146 (229)
                        +++ ..| .|++|.+.
T Consensus        90 --~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           90 --FPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             --CCSSCCC-EEEEECCG
T ss_pred             --cccCCCe-EEEEeCCc
Confidence              222 345 67887653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.57  E-value=5.4e-08  Score=82.11  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=54.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++++|||+|||+|.++..++++.           .+|+|||+++ |.        ..++++++ .+|+.+.+      
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~-----------~~V~aVEid~~li~~a~~~~~~~~~v~vi-~gD~l~~~------  109 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNA-----------KKVYVIEIDKSLEPYANKLKELYNNIEII-WGDALKVD------  109 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEEESCGGGHHHHHHHHHHCSSEEEE-ESCTTTSC------
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHhccCCCeEEE-ECchhhCC------
Confidence            4578999999999999999999873           5999999997 31        13578899 99998743      


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                        +++..||.|+++++.
T Consensus       110 --~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A          110 --LNKLDFNKVVANLPY  124 (295)
T ss_dssp             --GGGSCCSEEEEECCG
T ss_pred             --cccCCccEEEEeCcc
Confidence              334579999998764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.52  E-value=7.3e-08  Score=81.58  Aligned_cols=74  Identities=23%  Similarity=0.394  Sum_probs=54.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++++.+|||+|||+|+++..++++.         +.++|+|+|+++ +.        .. .++.++ ++|+.+...  .+
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~---------~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v-~~d~~~l~~--~l   91 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHC---------PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF-KVSYREADF--LL   91 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEE-ECCGGGHHH--HH
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE-ECCHHHHHH--HH
Confidence            4578999999999999999999886         457999999997 21        11 468888 999876321  11


Q ss_pred             HHHhCCCCccEEEeCCC
Q psy1489         129 VTILKDDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~  145 (229)
                      .. .....||.|++|.+
T Consensus        92 ~~-~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           92 KT-LGIEKVDGILMDLG  107 (301)
T ss_dssp             HH-TTCSCEEEEEEECS
T ss_pred             Hh-cCCCCCCEEEEcCc
Confidence            11 22257999998863

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.52  E-value=6.6e-07  Score=81.53  Aligned_cols=134  Identities=13%  Similarity=0.145  Sum_probs=79.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCC---------CCcEEEEEeCCC-C----------CCCCC-----CeE
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQ---------PKGLVLSVDKLP-I----------YPIDG-----AVV  113 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~---------~~~~v~gvD~~~-~----------~~~~~-----~~~  113 (229)
                      ..++.+|+|.|||+|++...+++++.........         ....++|+|+++ +          ..+..     +.+
T Consensus       167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I  246 (541)
T 2ar0_A          167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI  246 (541)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred             cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence            3567899999999999999988876411100000         013799999996 1          12333     567


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCc-ccHH--HHHHHHHHHHHHHHHcccCCCEEEEeecC----
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMRE-MDHD--LITQLAIAVIRFAVTYSKPGADCLIKIWD----  186 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~-~d~~--~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----  186 (229)
                      . ++|.....       ......||+|++|++........ ...+  .....-...+..+.++|+|||++++.+..    
T Consensus       247 ~-~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~  318 (541)
T 2ar0_A          247 R-LGNTLGSD-------GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF  318 (541)
T ss_dssp             E-ESCTTSHH-------HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred             E-eCCCcccc-------cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCccee
Confidence            7 88877632       12346899999998753321100 0000  00000124677789999999998876532    


Q ss_pred             -CCChHHHHHHHHhh
Q psy1489         187 -GRNRPQLEESITRF  200 (229)
Q Consensus       187 -~~~~~~~~~~l~~~  200 (229)
                       +.....+++.|...
T Consensus       319 ~~~~~~~iR~~L~~~  333 (541)
T 2ar0_A          319 EGGKGTDIRRDLMDK  333 (541)
T ss_dssp             CCTHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHhhc
Confidence             22234566555443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.50  E-value=4.7e-07  Score=80.26  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=52.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||+|||+|.++..+++..           .+|+|+|+++ +          ..+.++.++ .+|+.+.-     
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~-----------~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~-~~d~~~~l-----  347 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQA-----------ASVVGVEGVPALVEKGQQNARLNGLQNVTFY-HENLEEDV-----  347 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS-----------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCTTSCC-----
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-ECCHHHHh-----
Confidence            467899999999999999998752           6999999996 2          134578899 99987621     


Q ss_pred             HH-HhCCCCccEEEeCCCC
Q psy1489         129 VT-ILKDDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~-~~~~~~~D~V~sd~~~  146 (229)
                      .. .+.++.||+|++|++-
T Consensus       348 ~~~~~~~~~fD~Vv~dPPr  366 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPAR  366 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCT
T ss_pred             hhhhhhcCCCCEEEECCCC
Confidence            00 1335689999998753

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.47  E-value=9.6e-08  Score=79.08  Aligned_cols=70  Identities=20%  Similarity=0.068  Sum_probs=50.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-------CC-----------CC-CCCeEEecCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-------IY-----------PI-DGAVVLSKCDF  119 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-------~~-----------~~-~~~~~~~~~D~  119 (229)
                      ..++.+|||+|||+|.++..++.. +          ++|+|+|+++       -.           .+ .+++++ ++|+
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~-g----------~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~-~~d~  148 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL-G----------LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLH-FGNA  148 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT-T----------CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEE-ESCH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh-C----------CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEE-ECCH
Confidence            346789999999999999999885 3          5899999998       10           11 237888 8886


Q ss_pred             CChhHHHHHHHHhCC--CCccEEEeCCCC
Q psy1489         120 TQPDIQDRLVTILKD--DKLDVVLSDMAP  146 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~--~~~D~V~sd~~~  146 (229)
                      .+.     + ..+++  +.||+|++|++.
T Consensus       149 ~~~-----l-~~~~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          149 AEQ-----M-PALVKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHH-----H-HHHHHHHCCCSEEEECCCC
T ss_pred             HHH-----H-HhhhccCCCccEEEECCCC
Confidence            542     1 11223  689999999764

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.45  E-value=6.9e-07  Score=78.28  Aligned_cols=108  Identities=13%  Similarity=0.043  Sum_probs=65.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccC-C----------------------------CCCCCCcEEEEEeCCC-C----
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHG-Y----------------------------DSKQPKGLVLSVDKLP-I----  105 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~-~----------------------------~~~~~~~~v~gvD~~~-~----  105 (229)
                      .++..|||.+||+|.+++.++....... +                            .......+|+|+|+++ |    
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            5678999999999999999887642000 0                            0001225799999997 2    


Q ss_pred             ------CCCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHccc--C
Q psy1489         106 ------YPID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSK--P  176 (229)
Q Consensus       106 ------~~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk--p  176 (229)
                            ..+. .+++. ++|+.+.         .....||+|++|++.   |.+..+.    ...........+.|+  +
T Consensus       280 r~Na~~~gl~~~I~~~-~~D~~~~---------~~~~~fD~Iv~NPPY---g~rl~~~----~~l~~ly~~lg~~lk~~~  342 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFR-QLQVADF---------QTEDEYGVVVANPPY---GERLEDE----EAVRQLYREMGIVYKRMP  342 (393)
T ss_dssp             HHHHHHTTCTTCSEEE-ECCGGGC---------CCCCCSCEEEECCCC---CCSHHHH----HHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHcCCCCceEEE-ECChHhC---------CCCCCCCEEEECCCC---ccccCCc----hhHHHHHHHHHHHHhcCC
Confidence                  1233 47888 8988763         124589999999865   3332221    112223333333443  4


Q ss_pred             CCEEEEee
Q psy1489         177 GADCLIKI  184 (229)
Q Consensus       177 gG~~v~~~  184 (229)
                      ||.+.+-+
T Consensus       343 g~~~~iit  350 (393)
T 3k0b_A          343 TWSVYVLT  350 (393)
T ss_dssp             TCEEEEEE
T ss_pred             CCEEEEEE
Confidence            88887643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.44  E-value=1e-07  Score=78.75  Aligned_cols=70  Identities=13%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++..++++.           ++|+|+|+++ |.        ..++++++ ++|+.+.+.    .
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-----------~~V~avEid~~~~~~~~~~~~~~~~v~~i-~~D~~~~~~----~   90 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-----------DNLALVEIDRDLVAFLQKKYNQQKNITIY-QNDALQFDF----S   90 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-----------SEEEEEECCHHHHHHHHHHHTTCTTEEEE-ESCTTTCCG----G
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-----------CEEEEEECCHHHHHHHHHHHhhCCCcEEE-EcchHhCCH----H
Confidence            4578999999999999999998753           5999999997 21        23578899 999987542    1


Q ss_pred             HHhCCCCccEEEeCCC
Q psy1489         130 TILKDDKLDVVLSDMA  145 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~  145 (229)
                      ....+..|| |++|.+
T Consensus        91 ~~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           91 SVKTDKPLR-VVGNLP  105 (255)
T ss_dssp             GSCCSSCEE-EEEECC
T ss_pred             HhccCCCeE-EEecCC
Confidence            112245688 888764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.41  E-value=5.3e-07  Score=78.82  Aligned_cols=108  Identities=13%  Similarity=0.004  Sum_probs=65.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccC-C----------------------------CCCCCCcEEEEEeCCC-CC---
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHG-Y----------------------------DSKQPKGLVLSVDKLP-IY---  106 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~-~----------------------------~~~~~~~~v~gvD~~~-~~---  106 (229)
                      .++.+|||.|||+|.+++.++....... +                            ....+..+|+|+|+++ +.   
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            4678999999999999999887642000 0                            0001225799999997 21   


Q ss_pred             -------CCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC--
Q psy1489         107 -------PID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP--  176 (229)
Q Consensus       107 -------~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp--  176 (229)
                             .+. .+++. ++|+.+.         ..+..||+|++|++.   |.+..+.    ......+....+.|++  
T Consensus       274 r~Na~~~gl~~~i~~~-~~D~~~l---------~~~~~~D~Iv~NPPy---g~rl~~~----~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFN-VGDATQF---------KSEDEFGFIITNPPY---GERLEDK----DSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             HHHHHHHTCGGGEEEE-ECCGGGC---------CCSCBSCEEEECCCC---CCSHHHH----HHHHHHHHHHHHHHHTSB
T ss_pred             HHHHHHcCCCCceEEE-ECChhhc---------CcCCCCcEEEECCCC---cCccCCH----HHHHHHHHHHHHHHhhCC
Confidence                   122 46788 8887762         224589999999875   3222111    2223344444445544  


Q ss_pred             CCEEEEee
Q psy1489         177 GADCLIKI  184 (229)
Q Consensus       177 gG~~v~~~  184 (229)
                      ||.+.+-+
T Consensus       337 g~~~~iit  344 (385)
T 3ldu_A          337 NWSYYLIT  344 (385)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            88877643

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.37  E-value=2.4e-06  Score=80.42  Aligned_cols=135  Identities=8%  Similarity=-0.009  Sum_probs=78.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----C------C-------CCCCeEEecCCCCCh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----Y------P-------IDGAVVLSKCDFTQP  122 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~------~-------~~~~~~~~~~D~~~~  122 (229)
                      +++.+|||.|||+|++...++++.+.      ....+++|+|+++.    .      .       +....+. ..|+.+.
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~e------i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~-~dD~L~~  392 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNN------VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTIT-GEDVCSL  392 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTT------CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEE-CCCGGGC
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcc------cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEE-ecchhcc
Confidence            45789999999999999998876520      01257999999972    1      0       0112333 4444331


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHH------------------HHHHHHHHHHHHcccCCCEEEEee
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT------------------QLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~------------------~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .       ......||+|++|++.........+.....                  .+....+..+.++|+|||++++.+
T Consensus       393 ~-------~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl  465 (878)
T 3s1s_A          393 N-------PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM  465 (878)
T ss_dssp             C-------GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             c-------ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence            1       122468999999987632111111100000                  012346788999999999998865


Q ss_pred             cCC------CChHHHHHHHHhhCCeeEEEc
Q psy1489         185 WDG------RNRPQLEESITRFYSQVKILK  208 (229)
Q Consensus       185 ~~~------~~~~~~~~~l~~~F~~v~~~k  208 (229)
                      ..+      .....+++.|...+.-..++.
T Consensus       466 P~s~Lf~sg~~~kkLRk~LLe~~~I~aIId  495 (878)
T 3s1s_A          466 PKQYLTAQGNESKAFREFLVGNFGLEHIFL  495 (878)
T ss_dssp             ETHHHHCCSHHHHHHHHHHTTTTCEEEEEE
T ss_pred             ChHHhccCChHHHHHHHHHHhCCCeEEEEE
Confidence            332      124566666655444334443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.33  E-value=2.9e-06  Score=74.06  Aligned_cols=108  Identities=10%  Similarity=-0.019  Sum_probs=65.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccC-C----------------------------CCCCCCcEEEEEeCCC-C----
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHG-Y----------------------------DSKQPKGLVLSVDKLP-I----  105 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~-~----------------------------~~~~~~~~v~gvD~~~-~----  105 (229)
                      .++..|||.+||+|.+.+.++....... +                            .......+|+|+|+++ |    
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            5678999999999999999887642100 0                            0001225799999997 2    


Q ss_pred             ------CCCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHccc--C
Q psy1489         106 ------YPID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSK--P  176 (229)
Q Consensus       106 ------~~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk--p  176 (229)
                            ..+. .+++. ++|+.+.         .....||+|++|++.   |.+..+....    ...+..+.+.||  +
T Consensus       273 r~Na~~~gl~~~I~~~-~~D~~~l---------~~~~~fD~Iv~NPPY---G~rl~~~~~l----~~ly~~lg~~lk~~~  335 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLK-QMRLQDF---------KTNKINGVLISNPPY---GERLLDDKAV----DILYNEMGETFAPLK  335 (384)
T ss_dssp             HHHHHHTTCTTTEEEE-ECCGGGC---------CCCCCSCEEEECCCC---TTTTSCHHHH----HHHHHHHHHHHTTCT
T ss_pred             HHHHHHcCCCCceEEE-ECChHHC---------CccCCcCEEEECCch---hhccCCHHHH----HHHHHHHHHHHhhCC
Confidence                  1233 37788 8988763         123589999999875   3332222222    223333344444  4


Q ss_pred             CCEEEEee
Q psy1489         177 GADCLIKI  184 (229)
Q Consensus       177 gG~~v~~~  184 (229)
                      ||.+.+-+
T Consensus       336 g~~~~iit  343 (384)
T 3ldg_A          336 TWSQFILT  343 (384)
T ss_dssp             TSEEEEEE
T ss_pred             CcEEEEEE
Confidence            88887644

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.32  E-value=1e-07  Score=87.91  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             CCeeEeecCCCCchHH---HHHHHHhccCCCCCCCCcEEEEEeCCCCCC----------C-CCCeEEecCCCCChhHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQ---VAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----------I-DGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~---~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----------~-~~~~~~~~~D~~~~~~~~~  127 (229)
                      +..|||+|||+|-++.   .++++.+        ...+|+|||-++|..          . ..++++ ++|+++..    
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~--------~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI-~gd~eev~----  424 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQAD--------RRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVV-SSDMREWV----  424 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTT--------CEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEE-ESCTTTCC----
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHHHHhccCCCeEEEE-eCcceecc----
Confidence            4579999999998844   4444432        223799999998531          1 248899 99998842    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                          + ++++|+|+|-..    |.- .....    ...++....++|||||.++
T Consensus       425 ----L-PEKVDIIVSEwM----G~f-Ll~E~----mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          425 ----A-PEKADIIVSELL----GSF-ADNEL----SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             ----C-SSCEEEEECCCC----BTT-BGGGC----HHHHHHHHGGGEEEEEEEE
T ss_pred             ----C-CcccCEEEEEcC----ccc-ccccC----CHHHHHHHHHhcCCCcEEc
Confidence                3 468999999543    221 11212    2246677889999999875

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=98.32  E-value=1.5e-06  Score=70.98  Aligned_cols=88  Identities=19%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHH----HHHHHHHHHHHcccCCCEEEEeecCCCC--hHHHHHHHHhhCCeeEEEc
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQ----LAIAVIRFAVTYSKPGADCLIKIWDGRN--RPQLEESITRFYSQVKILK  208 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~----~~~~~l~~~~~~LkpgG~~v~~~~~~~~--~~~~~~~l~~~F~~v~~~k  208 (229)
                      +.||+|+.|+.-....    .|+...+    ....+-..+.+.|+|||+++++.+...+  .+.++..+-+.|..+.++|
T Consensus       210 grYDlVfvNv~TpyR~----HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~  285 (324)
T 3trk_A          210 GRYDLVVINIHTPFRI----HHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALK  285 (324)
T ss_dssp             CCEEEEEEECCCCCCS----SHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred             CceeEEEEecCCcccc----chHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeec
Confidence            6899999998632222    1333322    2234556788999999999999876543  6778888888999999999


Q ss_pred             CCCCCCCCceEEEEeccCC
Q psy1489         209 PPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       209 p~~sr~~s~E~Y~v~~~~~  227 (229)
                      |...- ++.|+++|+.+|-
T Consensus       286 P~cv~-snTEv~~vF~~~D  303 (324)
T 3trk_A          286 PPCVT-SNTEMFFLFSNFD  303 (324)
T ss_dssp             CTTCC-BTTCEEEEEEEEC
T ss_pred             Ccccc-ccceEEEEEEecc
Confidence            95544 4999999999874

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.31  E-value=4.5e-07  Score=75.57  Aligned_cols=68  Identities=10%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.++ +|||+|||+|.++..++++.           ++|+|+|+++ |.       .-.+++++ ++|+.+.+       
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~-----------~~V~avEid~~~~~~l~~~~~~~~v~vi-~~D~l~~~-------  104 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAG-----------AEVTAIEKDLRLRPVLEETLSGLPVRLV-FQDALLYP-------  104 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTT-----------CCEEEEESCGGGHHHHHHHTTTSSEEEE-ESCGGGSC-------
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHhcCCCCEEEE-ECChhhCC-------
Confidence            4567 99999999999999999863           5899999997 31       12468888 99987643       


Q ss_pred             HhCC-CCccEEEeCCCCC
Q psy1489         131 ILKD-DKLDVVLSDMAPN  147 (229)
Q Consensus       131 ~~~~-~~~D~V~sd~~~~  147 (229)
                       +++ ..+|.|++|.+.+
T Consensus       105 -~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A          105 -WEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             -GGGSCTTEEEEEEECSS
T ss_pred             -hhhccCccEEEecCccc
Confidence             111 2689999988653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.30  E-value=1.4e-07  Score=82.90  Aligned_cols=117  Identities=16%  Similarity=0.037  Sum_probs=70.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------C--CCCCCeEEecCCCCChhHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------Y--PIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~--~~~~~~~~~~~D~~~~~~~  125 (229)
                      +.+|.+|||||||+|..+..+++.           ..+|+|||+++ +          .  .+.+++++ ++|+.+.   
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~-----------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i-~~Da~~~---  155 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK-----------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNIL-TGDFKEY---  155 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEE-ESCGGGS---
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc-----------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEE-ECcHHHh---
Confidence            445899999999999999988764           25999999997 2          1  23457888 9998762   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCC-CCCcccHHHHHHHHHHHHHHHHH-cccCCCEEEEeecCCCChHHHHHHH
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNAT-GMREMDHDLITQLAIAVIRFAVT-YSKPGADCLIKIWDGRNRPQLEESI  197 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~-g~~~~d~~~~~~~~~~~l~~~~~-~LkpgG~~v~~~~~~~~~~~~~~~l  197 (229)
                        +.. +.+..||+|++|++-... +.+..+.    +.+.--+....+ ++..+..+++|.-.+-+....+..+
T Consensus       156 --L~~-~~~~~fDvV~lDPPrr~~~~grv~~l----ed~~P~l~~~~~~l~~~~~~~~vK~sP~ld~~~~~~~l  222 (410)
T 3ll7_A          156 --LPL-IKTFHPDYIYVDPARRSGADKRVYAI----ADCEPDLIPLATELLPFCSSILAKLSPMIDLWDTLQSL  222 (410)
T ss_dssp             --HHH-HHHHCCSEEEECCEEC-----CCCCG----GGEESCHHHHHHHHGGGSSEEEEEECTTSCHHHHHHHC
T ss_pred             --hhh-ccCCCceEEEECCCCcCCCCceEEeh----hhcCCCHHHHHHHHHhhCCcEEEEcCCCCChHHHHhhC
Confidence              111 123479999999864221 1111111    001112223333 3345567888886666655444443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.28  E-value=1.7e-07  Score=86.76  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             CCeeEeecCCCCchHHHHHHH---Hh-ccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKL---VN-SHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~---~~-~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +..|||+|||+|-++..++..   .+ ...+.....+.+|+|||.+++.          .. ..++++ ++|+++.....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI-~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTII-ESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEE-ESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEE-eCchhhccccc
Confidence            457999999999997543221   11 0000000012499999999731          12 348999 99998854210


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                         ..-..+++|+|+|-..    |.- .+.    ++....|..+.++|||||.++
T Consensus       489 ---~~~~~ekVDIIVSElm----Gsf-l~n----EL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 ---KDRGFEQPDIIVSELL----GSF-GDN----ELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             ---HHTTCCCCSEEEECCC----BTT-BGG----GSHHHHHHTTGGGSCTTCEEE
T ss_pred             ---ccCCCCcccEEEEecc----ccc-cch----hccHHHHHHHHHhCCCCcEEE
Confidence               0112578999999553    211 112    223345666689999999876

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.25  E-value=4.1e-07  Score=75.25  Aligned_cols=69  Identities=16%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             cCCC--CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CC-------------C-CCCeEEec
Q psy1489          59 LRPG--LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YP-------------I-DGAVVLSK  116 (229)
Q Consensus        59 ~~~g--~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~-------------~-~~~~~~~~  116 (229)
                      ++++  .+|||+|||+|..+..++.+ +          ++|+++|+++.      ..             + .+++++ .
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~-g----------~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~-~  151 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASV-G----------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI-H  151 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHH-T----------CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE-E
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHc-C----------CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE-E
Confidence            3566  89999999999999999987 3          58999999971      00             1 346677 7


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      +|..+      +...++ ..||+|++|++.
T Consensus       152 ~D~~~------~L~~~~-~~fDvV~lDP~y  174 (258)
T 2oyr_A          152 ASSLT------ALTDIT-PRPQVVYLDPMF  174 (258)
T ss_dssp             SCHHH------HSTTCS-SCCSEEEECCCC
T ss_pred             CCHHH------HHHhCc-ccCCEEEEcCCC
Confidence            77443      111122 369999999765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.22  E-value=4.5e-06  Score=62.70  Aligned_cols=92  Identities=24%  Similarity=0.308  Sum_probs=60.6

Q ss_pred             CCCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          60 RPGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        60 ~~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      .++.+|||+|||+| ..+.+|++..+          ..|+++|+++. .++   ++ +.|++++...     ..  +.||
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g----------~~V~atDInp~-Av~---~v-~dDiF~P~~~-----~Y--~~~D   91 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK----------VDLVLTDIKPS-HGG---IV-RDDITSPRME-----IY--RGAA   91 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC----------CEEEEECSSCS-STT---EE-CCCSSSCCHH-----HH--TTEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC----------CeEEEEECCcc-ccc---eE-EccCCCCccc-----cc--CCcC
Confidence            45679999999999 49999887543          57999999982 333   78 9999986421     11  3799


Q ss_pred             EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      +|.+--+|     .        ++...+++.|.+   -|..++++.+.+..
T Consensus        92 LIYsirPP-----~--------El~~~i~~lA~~---v~adliI~pL~~E~  126 (153)
T 2k4m_A           92 LIYSIRPP-----A--------EIHSSLMRVADA---VGARLIIKPLTGED  126 (153)
T ss_dssp             EEEEESCC-----T--------TTHHHHHHHHHH---HTCEEEEECBTTBC
T ss_pred             EEEEcCCC-----H--------HHHHHHHHHHHH---cCCCEEEEcCCCCc
Confidence            99663333     1        112233333332   36778888776543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.15  E-value=9.6e-06  Score=73.81  Aligned_cols=130  Identities=12%  Similarity=0.056  Sum_probs=79.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC--CCCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI--DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~--~~~~~~~~~D~~~~~~~~  126 (229)
                      .++.+|+|.|||+|++...+++++..      .....++|+|+++.           ..+  .++.+. ++|....+.  
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~------~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~-~gDtL~~d~--  290 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQ------PQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLH-NADTLDEDW--  290 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSC------TTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE-ESCTTTSCS--
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHh------ccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceE-ecceecccc--
Confidence            46789999999999999998887521      02468999999961           122  234567 888765310  


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcc----c-HHHHH-------HHHHHHHHHHHHccc-CCCEEEEeecC-----CC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREM----D-HDLIT-------QLAIAVIRFAVTYSK-PGADCLIKIWD-----GR  188 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~----d-~~~~~-------~~~~~~l~~~~~~Lk-pgG~~v~~~~~-----~~  188 (229)
                         .......||+|++|++.........    + .+...       ..-...+..+.+.|+ |||++++.+..     +.
T Consensus       291 ---p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~  367 (542)
T 3lkd_A          291 ---PTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGN  367 (542)
T ss_dssp             ---CCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCT
T ss_pred             ---cccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCc
Confidence               0023568999999988642110000    0 00000       001146778999999 99999876533     22


Q ss_pred             ChHHHHHHHHhhC
Q psy1489         189 NRPQLEESITRFY  201 (229)
Q Consensus       189 ~~~~~~~~l~~~F  201 (229)
                      ....+++.|-..+
T Consensus       368 ~~~~iRk~Lle~~  380 (542)
T 3lkd_A          368 AEGTIRKALLEEG  380 (542)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHhCC
Confidence            2456776665444

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.14  E-value=2.2e-06  Score=70.88  Aligned_cols=115  Identities=15%  Similarity=0.199  Sum_probs=71.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHH------hccCCCCCCCC-----cEEEEEeCCCCC-----------------------
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLV------NSHGYDSKQPK-----GLVLSVDKLPIY-----------------------  106 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~------~~~~~~~~~~~-----~~v~gvD~~~~~-----------------------  106 (229)
                      ++.+|||+|+|+|..+..+++..      .        |.     .+++++|..|+.                       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~--------p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~  131 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAH--------PQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQA  131 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHC--------TTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhC--------CCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHH
Confidence            45799999999999887776643      3        42     489999987721                       


Q ss_pred             C------------C----CCCeEEecCCCCChhHHHHHHHHhCC---CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHH
Q psy1489         107 P------------I----DGAVVLSKCDFTQPDIQDRLVTILKD---DKLDVVLSDMAPNATGMREMDHDLITQLAIAVI  167 (229)
Q Consensus       107 ~------------~----~~~~~~~~~D~~~~~~~~~i~~~~~~---~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l  167 (229)
                      .            .    .+++++ .+|+.+     .+.. +++   ..||+|+.|+.. ....+.+-       ....+
T Consensus       132 ~w~~~~~g~~r~~~~~~~~~l~l~-~GDa~~-----~l~~-~~~~~~~~~D~iflD~fs-p~~~p~lw-------~~~~l  196 (257)
T 2qy6_A          132 QWPMPLPGCHRLLLDEGRVTLDLW-FGDINE-----LISQ-LDDSLNQKVDAWFLDGFA-PAKNPDMW-------TQNLF  196 (257)
T ss_dssp             TCCCSCSEEEEEEEC--CEEEEEE-ESCHHH-----HGGG-SCGGGTTCEEEEEECSSC-TTTCGGGC-------CHHHH
T ss_pred             hccccccchhheeccCCceEEEEE-ECcHHH-----HHhh-cccccCCeEEEEEECCCC-cccChhhc-------CHHHH
Confidence            0            0    123345 565443     1221 222   279999999732 11111110       13577


Q ss_pred             HHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CC
Q psy1489         168 RFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YS  202 (229)
Q Consensus       168 ~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~  202 (229)
                      ..+.+.|+|||+|+.  |...  ..+...|... |.
T Consensus       197 ~~l~~~L~pGG~l~t--ysaa--~~vrr~L~~aGF~  228 (257)
T 2qy6_A          197 NAMARLARPGGTLAT--FTSA--GFVRRGLQEAGFT  228 (257)
T ss_dssp             HHHHHHEEEEEEEEE--SCCB--HHHHHHHHHHTEE
T ss_pred             HHHHHHcCCCcEEEE--EeCC--HHHHHHHHHCCCE
Confidence            889999999999985  4433  4566667665 54

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.14  E-value=6.9e-06  Score=67.06  Aligned_cols=90  Identities=9%  Similarity=-0.109  Sum_probs=59.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-C------CC--CCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-Y------PI--DGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-~------~~--~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+..+|||||||.|-++..+.   +         ..+++|+|+++ | .      ..  ....+. .+|....       
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~---------~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~-v~D~~~~-------  163 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---G---------IASVWGCDIHQGLGDVITPFAREKDWDFTFA-LQDVLCA-------  163 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---T---------CSEEEEEESBHHHHHHHHHHHHHTTCEEEEE-ECCTTTS-------
T ss_pred             CCCCeEEEecCCccHHHHHhc---c---------CCeEEEEeCCHHHHHHHHHHHHhcCCCceEE-EeecccC-------
Confidence            467899999999999888765   2         46999999997 2 1      01  234455 6776653       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHH-HHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQ-LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~-~~~~~l~~~~~~LkpgG~~v~  182 (229)
                        .+.+.+|+|++....           ..++ .....+..+.+.|+++|.+|-
T Consensus       164 --~~~~~~DvvLllk~l-----------h~LE~q~~~~~~~ll~aL~~~~vvVs  204 (253)
T 3frh_A          164 --PPAEAGDLALIFKLL-----------PLLEREQAGSAMALLQSLNTPRMAVS  204 (253)
T ss_dssp             --CCCCBCSEEEEESCH-----------HHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred             --CCCCCcchHHHHHHH-----------HHhhhhchhhHHHHHHHhcCCCEEEE
Confidence              335689999984421           1121 112233367778999987764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.13  E-value=4e-06  Score=78.65  Aligned_cols=112  Identities=16%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCC-----------------------------------CCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSK-----------------------------------QPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~-----------------------------------~~~~~v~gvD~~~  104 (229)
                      .++..|||.+||+|.+.+.++.....  ..|.                                   .+..+|+|+|+++
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~--~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~  266 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATD--RAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA  266 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTT--CCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhh--cCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence            46789999999999999988875310  0000                                   1235899999997


Q ss_pred             -CC----------CCCC-CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q psy1489         105 -IY----------PIDG-AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVT  172 (229)
Q Consensus       105 -~~----------~~~~-~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~  172 (229)
                       +.          .+.+ +++. ++|+.+..      .....+.||+|++|++.   |.+..+.. .+......+....+
T Consensus       267 ~av~~A~~N~~~agv~~~i~~~-~~D~~~~~------~~~~~~~~d~Iv~NPPY---G~Rlg~~~-~l~~ly~~l~~~lk  335 (703)
T 3v97_A          267 RVIQRARTNARLAGIGELITFE-VKDVAQLT------NPLPKGPYGTVLSNPPY---GERLDSEP-ALIALHSLLGRIMK  335 (703)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEEE-ECCGGGCC------CSCTTCCCCEEEECCCC---CC---CCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCceEEE-ECChhhCc------cccccCCCCEEEeCCCc---cccccchh-HHHHHHHHHHHHHH
Confidence             21          2232 6777 88877621      01112379999999875   33322211 11222344566677


Q ss_pred             cccCCCEEEEee
Q psy1489         173 YSKPGADCLIKI  184 (229)
Q Consensus       173 ~LkpgG~~v~~~  184 (229)
                      .+.|||.+.+-+
T Consensus       336 ~~~~g~~~~ilt  347 (703)
T 3v97_A          336 NQFGGWNLSLFS  347 (703)
T ss_dssp             HHCTTCEEEEEE
T ss_pred             hhCCCCeEEEEe
Confidence            777999988743

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.12  E-value=7.1e-06  Score=68.89  Aligned_cols=125  Identities=14%  Similarity=0.069  Sum_probs=85.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C---------------CCCCCeEEecCCCCChh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y---------------PIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~---------------~~~~~~~~~~~D~~~~~  123 (229)
                      +...+||-||-|-|+.+..+++..         +..+|+.||+++. .               .-++++++ .+|.... 
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~---------~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~-~~Dg~~~-  150 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHK---------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV-IDDGVNF-  150 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE-ESCTTTT-
T ss_pred             CCCCeEEEECCCchHHHHHHHHcC---------CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEE-echHHHH-
Confidence            345799999999999999888763         4568999999962 0               12568888 8887762 


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHHHHHh
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEESITR  199 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~~l~~  199 (229)
                          +.  -..++||+|+.|... ..+...  .+    .....++.+.+.|+|||.+++..-.    ......+...++.
T Consensus       151 ----l~--~~~~~yDvIi~D~~d-p~~~~~--~L----~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~  217 (294)
T 3o4f_A          151 ----VN--QTSQTFDVIISDCTD-PIGPGE--SL----FTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSH  217 (294)
T ss_dssp             ----TS--CSSCCEEEEEESCCC-CCCTTC--CS----SCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred             ----Hh--hccccCCEEEEeCCC-cCCCch--hh----cCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHh
Confidence                11  235689999999863 112111  00    0125677899999999999975422    2234556677788


Q ss_pred             hCCeeEEEc
Q psy1489         200 FYSQVKILK  208 (229)
Q Consensus       200 ~F~~v~~~k  208 (229)
                      .|..|....
T Consensus       218 ~F~~v~~~~  226 (294)
T 3o4f_A          218 YFSDVGFYQ  226 (294)
T ss_dssp             HCSEEEEEE
T ss_pred             hCCceeeee
Confidence            898887664

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=98.05  E-value=1.5e-05  Score=71.28  Aligned_cols=89  Identities=17%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHH----HHHHHHHHHHHcccCCCEEEEeecCCCC--hHHHHHHHHhhCCeeEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQ----LAIAVIRFAVTYSKPGADCLIKIWDGRN--RPQLEESITRFYSQVKIL  207 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~----~~~~~l~~~~~~LkpgG~~v~~~~~~~~--~~~~~~~l~~~F~~v~~~  207 (229)
                      ..+||+|+.|+.-....    .|+...+    ....+-..+.++|+|||+++++.+...+  .+.++..+.+.|..+.+.
T Consensus       219 ~~ryDlvfvn~~t~yr~----HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv~  294 (670)
T 4gua_A          219 QARYDLVFINIGTKYRN----HHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAA  294 (670)
T ss_dssp             CCCEEEEEECCCCCCCS----CHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEEE
T ss_pred             CCcccEEEEecCCCccc----chHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeeee
Confidence            45899999988532222    2333322    2234556789999999999999876543  577888888889999999


Q ss_pred             cCCCCCCCCceEEEEeccCC
Q psy1489         208 KPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       208 kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      ||...-+ +.|+++|+.+|-
T Consensus       295 ~p~~~~s-nTEv~~~f~~~D  313 (670)
T 4gua_A          295 RPDCVSS-NTEMYLIFRQLD  313 (670)
T ss_dssp             CCTTCSB-TTCEEEEEEEEC
T ss_pred             CCCcccc-CceEEEEEEecC
Confidence            9965544 499999998874

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.03  E-value=4e-05  Score=66.57  Aligned_cols=118  Identities=10%  Similarity=0.100  Sum_probs=68.4

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhc------cCCCCCCCCcEEEEEeCCCCC------CCCCC-----------------e
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNS------HGYDSKQPKGLVLSVDKLPIY------PIDGA-----------------V  112 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~------~~~~~~~~~~~v~gvD~~~~~------~~~~~-----------------~  112 (229)
                      +.+|+|||||+|..+..+...+-.      .......|.-+|+..|+-.-.      .++..                 -
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            589999999999999887433311      000112345688898875411      01110                 1


Q ss_pred             EE-e-cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCC-CCc-c----------c-------------H--HHHHHHH
Q psy1489         113 VL-S-KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATG-MRE-M----------D-------------H--DLITQLA  163 (229)
Q Consensus       113 ~~-~-~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g-~~~-~----------d-------------~--~~~~~~~  163 (229)
                      ++ + .+.+..        ..+++++||+|+|+.+..+.. .+. .          +             .  .+.....
T Consensus       133 f~~gvpgSFy~--------rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~  204 (374)
T 3b5i_A          133 FVAGVPGSFYR--------RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADL  204 (374)
T ss_dssp             EEEEEESCTTS--------CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhc--------ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHH
Confidence            11 0 222222        236789999999998754321 110 0          0             0  0111234


Q ss_pred             HHHHHHHHHcccCCCEEEEeecCC
Q psy1489         164 IAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       164 ~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ..+|+...+.|+|||+|++.+...
T Consensus       205 ~~fL~~ra~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          205 AEFLRARAAEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEecC
Confidence            567888999999999999977644

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.00  E-value=3.2e-06  Score=65.07  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=64.3

Q ss_pred             cCCCCeeEeecCCCCch--HHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          59 LRPGLKVLDCGAAPGSW--SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~--s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      +++|.+|||+|||....  +..+.+...                +.    ...++.+. .+|+.+...     ..+++++
T Consensus        10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~----------------~~----~~~~~~~~-~~d~~~~~~-----~~~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSPVEALKGLVDKLQ----------------AL----TGNEGRVS-VENIKQLLQ-----SAHKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTTSCHHHHHHHHHHHH----------------HH----TTTTSEEE-EEEGGGGGG-----GCCCSSC
T ss_pred             CCCCCEEEEecCCceeeeCCHHHHHHHH----------------Hh----cccCcEEE-EechhcCcc-----ccCCCCC
Confidence            57899999999998541  111111111                00    00136777 787766320     0025778


Q ss_pred             ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---------CCChHHHHHHHHhh-C
Q psy1489         137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---------GRNRPQLEESITRF-Y  201 (229)
Q Consensus       137 ~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---------~~~~~~~~~~l~~~-F  201 (229)
                      ||+|++.......   ..+       ...++.++.++|||||.|++....         .....++...++.. |
T Consensus        64 fD~V~~~~~l~~~---~~~-------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           64 FDIILSGLVPGST---TLH-------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             EEEEEECCSTTCC---CCC-------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             EeEEEECChhhhc---ccC-------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            9999996654211   011       146889999999999999985321         11256777888765 6

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.99  E-value=6.8e-06  Score=67.67  Aligned_cols=73  Identities=7%  Similarity=-0.002  Sum_probs=49.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CC---CCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YP---IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~---~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++.+|||+|||+|.++. ++ +.         ...+|+|+|+++ |     ..   .++++++ ++|+.+.+......
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~-~~---------~~~~v~avEid~~~~~~a~~~~~~~~~v~~i-~~D~~~~~~~~~~~   86 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PV-GE---------RLDQLTVIELDRDLAARLQTHPFLGPKLTIY-QQDAMTFNFGELAE   86 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HH-HT---------TCSCEEEECCCHHHHHHHHTCTTTGGGEEEE-CSCGGGCCHHHHHH
T ss_pred             CCCcCEEEEECCCCcHHHH-hh-hC---------CCCeEEEEECCHHHHHHHHHHhccCCceEEE-ECchhhCCHHHhhc
Confidence            4578899999999999999 54 32         222399999996 2     11   2368899 99988754332111


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                      .   ....|.|++|.+.
T Consensus        87 ~---~~~~~~vvsNlPY  100 (252)
T 1qyr_A           87 K---MGQPLRVFGNLPY  100 (252)
T ss_dssp             H---HTSCEEEEEECCT
T ss_pred             c---cCCceEEEECCCC
Confidence            0   1246899998865

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.93  E-value=1.2e-05  Score=73.26  Aligned_cols=129  Identities=14%  Similarity=0.087  Sum_probs=73.4

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCC------CCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSK------QPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDI  124 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~------~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~  124 (229)
                      .+|||.|||+|++...+++++........      .....++|+|+++.           ..+. .+.+. ++|..... 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~-~gDtL~~~-  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKK-NADSFLDD-  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSS-SCCTTTSC-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccccee-ccchhcCc-
Confidence            39999999999998887765420000000      00247999999961           1111 12224 67754421 


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCc--------------------ccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMRE--------------------MDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~--------------------~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                            ...+.+||+|++|++........                    ......  .-...+..+.+.|+|||++++.+
T Consensus       324 ------~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~--~~~~Fl~~~l~~Lk~gGr~aiVl  395 (544)
T 3khk_A          324 ------QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGN--ANFAWMLHMLYHLAPTGSMALLL  395 (544)
T ss_dssp             ------SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTC--THHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ------ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcc--hhHHHHHHHHHHhccCceEEEEe
Confidence                  12356899999998864321000                    000000  01146777999999999988765


Q ss_pred             cC-----C-CChHHHHHHHHhhC
Q psy1489         185 WD-----G-RNRPQLEESITRFY  201 (229)
Q Consensus       185 ~~-----~-~~~~~~~~~l~~~F  201 (229)
                      ..     . .....+++.|...+
T Consensus       396 P~g~L~~~~~~~~~iRk~Lle~~  418 (544)
T 3khk_A          396 ANGSMSSNTNNEGEIRKTLVEQD  418 (544)
T ss_dssp             ETHHHHCCGGGHHHHHHHHHHTT
T ss_pred             cchhhhcCcchHHHHHHHHHhCC
Confidence            32     2 23466776665544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.89  E-value=8.7e-06  Score=66.87  Aligned_cols=70  Identities=14%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +.++.+|||+|||+|.++..++++          +.++|+|+|+++ |      ....+++++ ++|+.+.+..    . 
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~----------~~~~v~avEid~~~~~~~~~~~~~~v~~i-~~D~~~~~~~----~-   92 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQH----------PLKKLYVIELDREMVENLKSIGDERLEVI-NEDASKFPFC----S-   92 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTS----------CCSEEEEECCCHHHHHHHTTSCCTTEEEE-CSCTTTCCGG----G-
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHhccCCCeEEE-EcchhhCChh----H-
Confidence            356889999999999999998875          246999999996 2      122367888 9999874321    1 


Q ss_pred             hCCCCccEEEeCCCC
Q psy1489         132 LKDDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~  146 (229)
                      +.+ . ..|++|.+.
T Consensus        93 ~~~-~-~~vv~NlPy  105 (249)
T 3ftd_A           93 LGK-E-LKVVGNLPY  105 (249)
T ss_dssp             SCS-S-EEEEEECCT
T ss_pred             ccC-C-cEEEEECch
Confidence            111 3 378887764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.84  E-value=2.5e-05  Score=67.72  Aligned_cols=130  Identities=21%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C-------C-----------CCCCeEEecCCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y-------P-----------IDGAVVLSKCDFTQ  121 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~-------~-----------~~~~~~~~~~D~~~  121 (229)
                      +..+||-||-|-|+.+..+++.          +..+|+.||+++. .       +           .++++++ .+|...
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh----------~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vi-i~Da~~  273 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL----------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVL-IEDCIP  273 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT----------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEE-ESCHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhc----------CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeee-hHHHHH
Confidence            4589999999999999888764          3368999999961 0       1           0235555 555433


Q ss_pred             hhHHHHHHHH-hCCCCccEEEeCCCCCC-CCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHHHHH
Q psy1489         122 PDIQDRLVTI-LKDDKLDVVLSDMAPNA-TGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQLEES  196 (229)
Q Consensus       122 ~~~~~~i~~~-~~~~~~D~V~sd~~~~~-~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~~~~  196 (229)
                           .+.+. -..++||+|+.|..... ......  ..........++.+.+.|+|||.+++..-..   .....+...
T Consensus       274 -----fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g--~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~t  346 (381)
T 3c6k_A          274 -----VLKRYAKEGREFDYVINDLTAVPISTSPEE--DSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQ  346 (381)
T ss_dssp             -----HHHHHHHHTCCEEEEEEECCSSCCCCC------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHH
T ss_pred             -----HHHhhhhccCceeEEEECCCCCcccCcccC--cchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHH
Confidence                 12221 12468999999975211 111111  0111123467888999999999998753221   123445677


Q ss_pred             HHhhCCeeEEEc
Q psy1489         197 ITRFYSQVKILK  208 (229)
Q Consensus       197 l~~~F~~v~~~k  208 (229)
                      +++.|..|....
T Consensus       347 l~~vF~~v~~~~  358 (381)
T 3c6k_A          347 LGRLYCPVEFSK  358 (381)
T ss_dssp             HTTSSSCEEEEE
T ss_pred             HHHhCCcceEee
Confidence            777788776543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.83  E-value=5.8e-05  Score=59.96  Aligned_cols=110  Identities=19%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CC---CCCCeEEecCCCCCh---
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YP---IDGAVVLSKCDFTQP---  122 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~---~~~~~~~~~~D~~~~---  122 (229)
                      .+..+||++||  |.-+..+|+ .         ++++|+.+|.++.           ..   ..+++++ .+|+.+.   
T Consensus        29 ~~a~~VLEiGt--GySTl~lA~-~---------~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~-~gda~~~~~w   95 (202)
T 3cvo_A           29 EEAEVILEYGS--GGSTVVAAE-L---------PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIV-WTDIGPTGDW   95 (202)
T ss_dssp             HHCSEEEEESC--SHHHHHHHT-S---------TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEE-ECCCSSBCGG
T ss_pred             hCCCEEEEECc--hHHHHHHHH-c---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEE-EeCchhhhcc
Confidence            45689999998  455555554 2         3589999999861           12   2357788 8886542   


Q ss_pred             ---------hHHHHHH-HH--h-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee-cCCC
Q psy1489         123 ---------DIQDRLV-TI--L-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI-WDGR  188 (229)
Q Consensus       123 ---------~~~~~i~-~~--~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~-~~~~  188 (229)
                               +....+. ..  + ..++||+|+.|+..         .       ...+..+.+.|+|||.+++.- ...+
T Consensus        96 g~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k---------~-------~~~~~~~l~~l~~GG~Iv~DNv~~r~  159 (202)
T 3cvo_A           96 GHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF---------R-------VGCALATAFSITRPVTLLFDDYSQRR  159 (202)
T ss_dssp             GCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS---------H-------HHHHHHHHHHCSSCEEEEETTGGGCS
T ss_pred             cccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC---------c-------hhHHHHHHHhcCCCeEEEEeCCcCCc
Confidence                     1111111 11  1 23689999999843         1       123444778999999998743 3345


Q ss_pred             ChHHHHHHHH
Q psy1489         189 NRPQLEESIT  198 (229)
Q Consensus       189 ~~~~~~~~l~  198 (229)
                      ....+.+.+.
T Consensus       160 ~y~~v~~~~~  169 (202)
T 3cvo_A          160 WQHQVEEFLG  169 (202)
T ss_dssp             SGGGGHHHHC
T ss_pred             chHHHHHHHh
Confidence            5566655554

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.81  E-value=1.3e-05  Score=66.86  Aligned_cols=74  Identities=9%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCC-CcEEEEEeCCC-CCC------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQP-KGLVLSVDKLP-IYP------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~-~~~v~gvD~~~-~~~------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +.++.+|||+|||+|.++..++++..        . .++|+|+|+++ |..      ..+++++ ++|+.+.+..    .
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~--------~~~~~V~avDid~~~l~~a~~~~~~~v~~i-~~D~~~~~~~----~  106 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLA--------TPGSPLHAVELDRDLIGRLEQRFGELLELH-AGDALTFDFG----S  106 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHC--------BTTBCEEEEECCHHHHHHHHHHHGGGEEEE-ESCGGGCCGG----G
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCC--------CcCCeEEEEECCHHHHHHHHHhcCCCcEEE-ECChhcCChh----H
Confidence            45789999999999999999998863        1 24599999997 311      2468888 9998774321    1


Q ss_pred             HhCCC--CccEEEeCCC
Q psy1489         131 ILKDD--KLDVVLSDMA  145 (229)
Q Consensus       131 ~~~~~--~~D~V~sd~~  145 (229)
                      ..++.  ..+.|++|.+
T Consensus       107 ~~~~~~~~~~~vv~NlP  123 (279)
T 3uzu_A          107 IARPGDEPSLRIIGNLP  123 (279)
T ss_dssp             GSCSSSSCCEEEEEECC
T ss_pred             hcccccCCceEEEEccC
Confidence            12111  3457888775

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.79  E-value=5e-05  Score=63.22  Aligned_cols=72  Identities=22%  Similarity=0.381  Sum_probs=53.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----CC--CCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----PI--DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----~~--~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++++..+||.+||.|+.+..++++ +          ++|+|+|.++. .    .+  +++.++ ++|+.+....  + ..
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~----------g~VigiD~Dp~Ai~~A~~L~~~rv~lv-~~~f~~l~~~--L-~~   84 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-G----------GRVIGLDQDPEAVARAKGLHLPGLTVV-QGNFRHLKRH--L-AA   84 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHTCCTTEEEE-ESCGGGHHHH--H-HH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-C----------CEEEEEeCCHHHHHHHHhhccCCEEEE-ECCcchHHHH--H-HH
Confidence            467899999999999999999986 3          69999999971 0    02  468888 9998874321  2 22


Q ss_pred             hCCCCccEEEeCCC
Q psy1489         132 LKDDKLDVVLSDMA  145 (229)
Q Consensus       132 ~~~~~~D~V~sd~~  145 (229)
                      ....++|.|++|..
T Consensus        85 ~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           85 LGVERVDGILADLG   98 (285)
T ss_dssp             TTCSCEEEEEEECS
T ss_pred             cCCCCcCEEEeCCc
Confidence            33367999998764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.79  E-value=7.6e-05  Score=67.75  Aligned_cols=142  Identities=11%  Similarity=0.119  Sum_probs=75.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCC----CCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSK----QPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~----~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~  123 (229)
                      ..++.+|+|-+||+|+|...+.+++........    .....++|+|+++.           ..+....+. .+|.....
T Consensus       215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~-~~dtL~~~  293 (530)
T 3ufb_A          215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID-PENSLRFP  293 (530)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE-CSCTTCSC
T ss_pred             cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc-ccccccCc
Confidence            456889999999999999888777642111000    01236999999861           122334455 67754321


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHH-------HHHHHHHHHHHHHccc-------CCCEEEEeec----
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI-------TQLAIAVIRFAVTYSK-------PGADCLIKIW----  185 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~-------~~~~~~~l~~~~~~Lk-------pgG~~v~~~~----  185 (229)
                      .    ....+..+||+|++|++.....  ..+....       .......+..+.+.|+       |||++.+.+.    
T Consensus       294 ~----~~~~~~~~fD~Il~NPPf~~~~--~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~L  367 (530)
T 3ufb_A          294 L----REMGDKDRVDVILTNPPFGGEE--EKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTL  367 (530)
T ss_dssp             G----GGCCGGGCBSEEEECCCSSCBC--CHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHH
T ss_pred             h----hhhcccccceEEEecCCCCccc--cccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhh
Confidence            1    0112245799999998863211  1000000       0001123444555554       7999887653    


Q ss_pred             -CCCChHHHHHHHHhhCCeeEEE
Q psy1489         186 -DGRNRPQLEESITRFYSQVKIL  207 (229)
Q Consensus       186 -~~~~~~~~~~~l~~~F~~v~~~  207 (229)
                       .+.....+++.|-..+.-..+.
T Consensus       368 f~~~~~~~iRk~Lle~~~l~aII  390 (530)
T 3ufb_A          368 FSDGISARIKEELLKNFNLHTIV  390 (530)
T ss_dssp             HCCTHHHHHHHHHHHHSEEEEEE
T ss_pred             hccchHHHHHHHHhhcCEEEEEE
Confidence             2333345666665544333333

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.75  E-value=0.00013  Score=63.54  Aligned_cols=120  Identities=12%  Similarity=0.012  Sum_probs=65.6

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhc-c--CC-----CCCCCCcEEEEEeCCCCC------CC--------------CCCeE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNS-H--GY-----DSKQPKGLVLSVDKLPIY------PI--------------DGAVV  113 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~-~--~~-----~~~~~~~~v~gvD~~~~~------~~--------------~~~~~  113 (229)
                      ..+|+||||++|..+..+...+=. .  ..     ....|.-+|+..|+-...      .+              .+.-+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999999887765210 0  00     001234567777764200      00              01122


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCC-CCCcc-c-------------------H-H------HHHHHHHH
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT-GMREM-D-------------------H-D------LITQLAIA  165 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~-g~~~~-d-------------------~-~------~~~~~~~~  165 (229)
                      + .+.-..-     ....++++++|+|+|+.+..+. ..+.. .                   . .      +.......
T Consensus       133 ~-~gvpgSF-----y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          133 I-GAMPGSF-----YSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             E-EECCSCT-----TSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             E-Eecchhh-----hhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            2 2221110     0124678899999999875431 11100 0                   0 0      11123345


Q ss_pred             HHHHHHHcccCCCEEEEeecCC
Q psy1489         166 VIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       166 ~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      .|+.-.+.|+|||+|++.+...
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr  228 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICK  228 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHhccCCeEEEEEecC
Confidence            6788899999999999977544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.67  E-value=3.6e-05  Score=65.55  Aligned_cols=83  Identities=18%  Similarity=0.244  Sum_probs=58.5

Q ss_pred             hhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CC--CCCCeEEecCCCCChh
Q psy1489          51 EIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YP--IDGAVVLSKCDFTQPD  123 (229)
Q Consensus        51 ~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~--~~~~~~~~~~D~~~~~  123 (229)
                      |+.+.+. +++|..++|..||.|+.+..++++++        +.++|+|+|.++.     ..  ..++.++ ++++.+..
T Consensus        48 Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg--------~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv-~~nF~~l~  117 (347)
T 3tka_A           48 EAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLG--------EEGRLLAIDRDPQAIAVAKTIDDPRFSII-HGPFSALG  117 (347)
T ss_dssp             HHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCC--------TTCEEEEEESCHHHHHHHTTCCCTTEEEE-ESCGGGHH
T ss_pred             HHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHhhcCCcEEEE-eCCHHHHH
Confidence            3334444 47899999999999999999999876        7899999999971     11  2457788 88877732


Q ss_pred             HHHHHHHHhCCCCccEEEeCCC
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~  145 (229)
                        ..+...--.+++|.|+.|..
T Consensus       118 --~~L~~~g~~~~vDgILfDLG  137 (347)
T 3tka_A          118 --EYVAERDLIGKIDGILLDLG  137 (347)
T ss_dssp             --HHHHHTTCTTCEEEEEEECS
T ss_pred             --HHHHhcCCCCcccEEEECCc
Confidence              11221101136999999864

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.66  E-value=9.3e-05  Score=63.87  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHH--------HhccCCCCCCCCcEEEEEeCCCC------CCCC------CCeEE-e-cCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKL--------VNSHGYDSKQPKGLVLSVDKLPI------YPID------GAVVL-S-KCD  118 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~--------~~~~~~~~~~~~~~v~gvD~~~~------~~~~------~~~~~-~-~~D  118 (229)
                      ...+|+||||++|..+..+...        ....+ ....|.-+|+..|+-.-      ..++      +..++ + .+.
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~-~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMG-RENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSS-CSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcC-CCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            4478999999999877654322        11001 00135568999998641      1122      12233 0 233


Q ss_pred             CCChhHHHHHHHHhCCCCccEEEeCCCCCCC-CCC----c-----------------ccHHHHHHHHHHHHHHHHHcccC
Q psy1489         119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNAT-GMR----E-----------------MDHDLITQLAIAVIRFAVTYSKP  176 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~-g~~----~-----------------~d~~~~~~~~~~~l~~~~~~Lkp  176 (229)
                      +..        ..++++++|+|+|+.+..+. ..+    +                 .-...........|+.-.+.|+|
T Consensus       130 Fy~--------rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p  201 (359)
T 1m6e_X          130 FYG--------RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP  201 (359)
T ss_dssp             SSS--------CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred             hhh--------ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            332        34788999999999875321 111    0                 11112233455778888999999


Q ss_pred             CCEEEEeecC
Q psy1489         177 GADCLIKIWD  186 (229)
Q Consensus       177 gG~~v~~~~~  186 (229)
                      ||+|++.+..
T Consensus       202 GG~mvl~~~g  211 (359)
T 1m6e_X          202 GGRMVLTILG  211 (359)
T ss_dssp             TCEEEEEEEE
T ss_pred             CceEEEEEec
Confidence            9999997754

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.40  E-value=0.0002  Score=59.84  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=66.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------------------------------
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------------------------------  106 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------------------------------  106 (229)
                      ...||++|+..|.-+..++..+...+    .+.++|+++|..+ +.                                  
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g----~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~  182 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHD----VRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR  182 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTT----CCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcC----CCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence            46999999999999988887653100    0257899999753 10                                  


Q ss_pred             --C--CCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         107 --P--IDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       107 --~--~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                        .  ..+++++ .+|+.+.     +.. +++++||+|+.|+..          .   +.....|..+...|+|||.+++
T Consensus       183 ~~gl~~~~I~li-~Gda~et-----L~~-~~~~~~d~vfIDaD~----------y---~~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          183 NYDLLDEQVRFL-PGWFKDT-----LPT-APIDTLAVLRMDGDL----------Y---ESTWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             HTTCCSTTEEEE-ESCHHHH-----STT-CCCCCEEEEEECCCS----------H---HHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HcCCCcCceEEE-EeCHHHH-----Hhh-CCCCCEEEEEEcCCc----------c---ccHHHHHHHHHhhcCCCEEEEE
Confidence              0  1346666 7765331     111 335689999998731          1   1234567889999999999987


Q ss_pred             eec
Q psy1489         183 KIW  185 (229)
Q Consensus       183 ~~~  185 (229)
                      .-+
T Consensus       243 DD~  245 (282)
T 2wk1_A          243 DDY  245 (282)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.80  E-value=0.002  Score=50.12  Aligned_cols=95  Identities=22%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||..|++.  |.....++...|          .+|+++|.++-  ..  -.++...  .|..+.+..+.+.+..
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G----------~~V~~~~~~~~~~~~~~~~g~~~~--~d~~~~~~~~~~~~~~  103 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIG----------ARIYTTAGSDAKREMLSRLGVEYV--GDSRSVDFADEILELT  103 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHTTCCSEE--EETTCSTHHHHHHHHT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCEE--eeCCcHHHHHHHHHHh
Confidence            56899999999532  444444444433          58999998751  00  1122222  2444444445555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+.....                  ..+..+.+.|++||++++.
T Consensus       104 ~~~~~D~vi~~~g~------------------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          104 DGYGVDVVLNSLAG------------------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             TTCCEEEEEECCCT------------------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCCeEEEECCch------------------HHHHHHHHHhccCCEEEEE
Confidence            45579999985421                  1345688899999999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.79  E-value=0.0012  Score=57.41  Aligned_cols=106  Identities=18%  Similarity=0.293  Sum_probs=63.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhH-HHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDI-QDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~-~~~i~~~~  132 (229)
                      +++|++||.+|||+ |.++..+++..+         ..+|+++|.++-  .  .--++..+   |..+.+. .+.+.+..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~i---~~~~~~~~~~~~~~~~  250 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLG---------AACVIVGDQNPERLKLLSDAGFETI---DLRNSAPLRDQIDQIL  250 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHHTTTCEEE---ETTSSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCcEE---cCCCcchHHHHHHHHh
Confidence            57899999999987 777777887764         348999998861  1  11234444   2223232 34455545


Q ss_pred             CCCCccEEEeCCCCCCCCCCcc----cHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREM----DHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~----d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+-...     ....    +...  ......+..+.+.|++||++++.
T Consensus       251 ~g~g~Dvvid~~g-----~~~~~~~~~~~~--~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          251 GKPEVDCGVDAVG-----FEAHGLGDEANT--ETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SSSCEEEEEECSC-----TTCBCSGGGTTS--BCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCCCEEEECCC-----Cccccccccccc--cccHHHHHHHHHHHhcCCEEEEe
Confidence            5557999997432     1110    0000  00012456688899999998753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.71  E-value=0.0014  Score=56.26  Aligned_cols=95  Identities=16%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++-  ...  -++. ++   |..+.+..+.+.+..
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~vi---~~~~~~~~~~~~~~~  255 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCG---------ASIIIAVDIVESRLELAKQLGATHVI---NSKTQDPVAAIKEIT  255 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHHHcCCCEEe---cCCccCHHHHHHHhc
Confidence            56899999999887 777777777764         237999998761  100  1222 23   222333344455544


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+ .+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       256 ~g-g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          256 DG-GVNFALESTGS-----------------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             TS-CEEEEEECSCC-----------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CC-CCcEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEe
Confidence            44 89999974321                 13466788999999999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.70  E-value=0.0033  Score=53.70  Aligned_cols=96  Identities=24%  Similarity=0.302  Sum_probs=60.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCC---ChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFT---QPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~---~~~~~~~i~  129 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-  .  .--++ .++   |..   +.+....+.
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~vi---~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMG---------AAQVVVTDLSATRLSKAKEIGADLVL---QISKESPQEIARKVE  236 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHHHTTCSEEE---ECSSCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEEE---cCcccccchHHHHHH
Confidence            57899999999876 666677776653         238999998761  1  01123 222   222   133444455


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +... ..+|+|+.....                 ...+..+.+.|++||++++.-
T Consensus       237 ~~~~-~g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          237 GQLG-CKPEVTIECTGA-----------------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHT-SCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhC-CCCCEEEECCCC-----------------hHHHHHHHHHhcCCCEEEEEe
Confidence            5444 679999974321                 124566888999999998743

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.67  E-value=0.0041  Score=53.91  Aligned_cols=73  Identities=14%  Similarity=0.057  Sum_probs=51.5

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .+|+||.||.|+++.-+.+. |         -..|.++|+++.      ...++..++ .+|+.+..........+....
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G---------~~~v~avE~d~~a~~t~~~N~~~~~~~-~~DI~~~~~~~~~~~~~~~~~   71 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-G---------FDVKMAVEIDQHAINTHAINFPRSLHV-QEDVSLLNAEIIKGFFKNDMP   71 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-T---------CEEEEEECSCHHHHHHHHHHCTTSEEE-CCCGGGCCHHHHHHHHCSCCC
T ss_pred             CeEEEEccCcCHHHHHHHHC-C---------CcEEEEEeCCHHHHHHHHHhCCCCceE-ecChhhcCHHHHHhhcccCCC
Confidence            58999999999999987764 2         246789999872      134567788 899887543221112234568


Q ss_pred             ccEEEeCCCC
Q psy1489         137 LDVVLSDMAP  146 (229)
Q Consensus       137 ~D~V~sd~~~  146 (229)
                      +|+|+.+.++
T Consensus        72 ~D~i~ggpPC   81 (376)
T 3g7u_A           72 IDGIIGGPPC   81 (376)
T ss_dssp             CCEEEECCCC
T ss_pred             eeEEEecCCC
Confidence            9999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.60  E-value=0.0097  Score=50.81  Aligned_cols=99  Identities=21%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCC-CCCeEEecCC-CCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPI-DGAVVLSKCD-FTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~-~~~~~~~~~D-~~~~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |.++..+++..|         ...|+++|.++-     ..+ ..+... ..| ....+..+.+.+
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAG---------ACPLVITDIDEGRLKFAKEICPEVVTH-KVERLSAEESAKKIVE  246 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTT---------CCSEEEEESCHHHHHHHHHHCTTCEEE-ECCSCCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhchhcccc-cccccchHHHHHHHHH
Confidence            57899999999876 667777777654         234999998761     011 122112 222 122445555666


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ...+..+|+|+-....                 ...+..+.+.|++||++++.-
T Consensus       247 ~t~g~g~Dvvid~~g~-----------------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          247 SFGGIEPAVALECTGV-----------------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HTSSCCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEECC
T ss_pred             HhCCCCCCEEEECCCC-----------------hHHHHHHHHHhcCCCEEEEEc
Confidence            6666789999973321                 124566888999999998743

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.55  E-value=0.0039  Score=53.12  Aligned_cols=95  Identities=20%  Similarity=0.281  Sum_probs=58.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC-hhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ-PDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~-~~~~~~i~~~  131 (229)
                      +++|++||-+|+|+ |.++..+++..+          .+|+++|.++-  .  .--++. ++   |..+ .+..+.+.+.
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~~~---~~~~~~~~~~~i~~~  232 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYG----------AFVVCTARSPRRLEVAKNCGADVTL---VVDPAKEEESSIIER  232 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHTTCSEEE---ECCTTTSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHhCCCEEE---cCcccccHHHHHHHH
Confidence            57899999999865 556666666554          47999998751  0  011222 22   2222 2333344444


Q ss_pred             hC---CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LK---DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~---~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..   +..+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       233 ~~~~~g~g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          233 IRSAIGDLPNVTIDCSGN-----------------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             HHHHSSSCCSEEEECSCC-----------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             hccccCCCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            43   4579999974321                 12456688899999999864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.52  E-value=0.003  Score=53.59  Aligned_cols=97  Identities=19%  Similarity=0.069  Sum_probs=63.2

Q ss_pred             cCCCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|++ +++..+++..         ...+|+++|.++-  .  ..-++ .++   |..+.+..+.+.+..
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~---------~g~~Vi~~~~~~~r~~~~~~~Ga~~~i---~~~~~~~~~~v~~~t  228 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNV---------FGAKVIAVDINQDKLNLAKKIGADVTI---NSGDVNPVDEIKKIT  228 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT---------SCCEEEEEESCHHHHHHHHHTTCSEEE---EC-CCCHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHh---------CCCEEEEEECcHHHhhhhhhcCCeEEE---eCCCCCHHHHhhhhc
Confidence            578999999999984 4555555554         3469999999861  0  11122 233   334444556676666


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+|.++.+...                 ...+..+.+.|+++|++++.-
T Consensus       229 ~g~g~d~~~~~~~~-----------------~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          229 GGLGVQSAIVCAVA-----------------RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             TSSCEEEEEECCSC-----------------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCceEEEEeccC-----------------cchhheeheeecCCceEEEEe
Confidence            66778888875421                 135667889999999988643

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.52  E-value=0.012  Score=50.72  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCC--ChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFT--QPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~--~~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-.    .--++. ++   |..  +.+..+.+.+
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~vi---~~~~~~~~~~~~i~~  258 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAG---------ASRIIGIDIDSKKYETAKKFGVNEFV---NPKDHDKPIQEVIVD  258 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHT---------CSCEEEECSCTTHHHHHHTTTCCEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCcEEE---ccccCchhHHHHHHH
Confidence            57899999999977 777777777764         3489999988611    111222 23   222  2334445555


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~  184 (229)
                      ...+ .+|+|+-..     |.            ...+..+.+.|++| |++++.-
T Consensus       259 ~~~g-g~D~vid~~-----g~------------~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          259 LTDG-GVDYSFECI-----GN------------VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             HTTS-CBSEEEECS-----CC------------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             hcCC-CCCEEEECC-----CC------------HHHHHHHHHHhhccCCEEEEEc
Confidence            5544 899999733     21            13566788999997 9988643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.46  E-value=0.0093  Score=50.46  Aligned_cols=70  Identities=7%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCC---CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATG---MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g---~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ...++ .+|..+      ....+++++||+|++|++.....   .....+..........+.++.++|+|||.+++.+..
T Consensus        14 ~~~ii-~gD~~~------~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           14 NGSMY-IGDSLE------LLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SEEEE-ESCHHH------HGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CceEE-eCcHHH------HHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            34566 777543      22346678999999999864321   111223334455678899999999999999987644

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.45  E-value=0.01  Score=50.99  Aligned_cols=53  Identities=21%  Similarity=0.064  Sum_probs=42.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~  123 (229)
                      +++.|||+|.|+|.+|..|+++.         ...+|+++|+++ +       ...++++++ .+|+.+.+
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~---------~~~~vvavE~D~~l~~~L~~~~~~~~l~ii-~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKY---------CPRQYSLLEKRSSLYKFLNAKFEGSPLQIL-KRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH---------CCSEEEEECCCHHHHHHHHHHTTTSSCEEE-CSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhC---------CCCEEEEEecCHHHHHHHHHhccCCCEEEE-ECCccchh
Confidence            46899999999999999999874         235899999985 1       123578999 99998755

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.44  E-value=0.0015  Score=55.68  Aligned_cols=96  Identities=22%  Similarity=0.276  Sum_probs=61.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-  ...  -++. ++   |..+.+..+.+.+..
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLG---------AGRIFAVGSRKHCCDIALEYGATDII---NYKNGDIVEQILKAT  231 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTT---------CSSEEEECCCHHHHHHHHHHTCCEEE---CGGGSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHHHHhCCceEE---cCCCcCHHHHHHHHc
Confidence            57899999999876 666666666543         237999998761  100  1222 23   333334455566666


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+...     |..            ..+..+.+.|++||++++.
T Consensus       232 ~g~g~D~v~d~~-----g~~------------~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          232 DGKGVDKVVIAG-----GDV------------HTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             TTCCEEEEEECS-----SCT------------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCCEEEECC-----CCh------------HHHHHHHHHHhcCCEEEEe
Confidence            666899999633     111            2456688899999999864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.36  E-value=0.0059  Score=51.68  Aligned_cols=93  Identities=18%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+|+ |.++..+++..+          .+|+++|.++-  .  .--++. ++   |..+.+..+.+.+..
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~~i---~~~~~~~~~~~~~~~  230 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMG----------LRVAAVDIDDAKLNLARRLGAEVAV---NARDTDPAAWLQKEI  230 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHTTCSEEE---ETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHHHHcCCCEEE---eCCCcCHHHHHHHhC
Confidence            57899999999987 777777777654          59999998861  1  011222 23   233333444444422


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                        +.+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       231 --g~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          231 --GGAHGVLVTAVS-----------------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             --SSEEEEEESSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             --CCCCEEEEeCCC-----------------HHHHHHHHHHhccCCEEEEe
Confidence              379999874321                 13466788899999999864

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.35  E-value=0.0017  Score=54.25  Aligned_cols=34  Identities=29%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+|+.|||++||+|..+..+++. +          .+++|+|+++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~-g----------~~~~g~e~~~  267 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW-G----------RRALGVELVP  267 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-T----------CEEEEEESCH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc-C----------CeEEEEeCCH
Confidence            57899999999999999887654 3          5899999987

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.34  E-value=0.0039  Score=54.08  Aligned_cols=106  Identities=18%  Similarity=0.325  Sum_probs=62.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChh-HHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPD-IQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~-~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |.++..+++..|         ..+|+++|.++-  .  .--++..+   |..+.+ ..+.+.+..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~i---~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLG---------AAVVIVGDLNPARLAHAKAQGFEIA---DLSLDTPLHEQIAALL  250 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHHHTTCEEE---ETTSSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC---------CCeEEEEcCCHHHHHHHHHcCCcEE---ccCCcchHHHHHHHHh
Confidence            57899999999877 777777777654         337999998861  1  11234434   222222 334455555


Q ss_pred             CCCCccEEEeCCCCCCCC-----CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATG-----MREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g-----~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+-.......+     .+..+       ....+..+.+.|++||++++.
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEA-------PATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBC-------TTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCCEEEECCCCcccccccccccccc-------hHHHHHHHHHHHhcCCEEEEe
Confidence            556799999743211000     00000       012456688999999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.26  E-value=0.002  Score=55.33  Aligned_cols=94  Identities=17%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |..+..+++..|          .+|+++|.++-  ...  -++. ++   |-...+..+.+.+..
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATG----------AEVIVTSSSREKLDRAFALGADHGI---NRLEEDWVERVYALT  253 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEecCchhHHHHHHcCCCEEE---cCCcccHHHHHHHHh
Confidence            57899999999877 666677777654          59999998751  100  1222 33   222233445566666


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+.....                  ..+..+.+.|+++|++++.
T Consensus       254 ~g~g~D~vid~~g~------------------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          254 GDRGADHILEIAGG------------------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             TTCCEEEEEEETTS------------------SCHHHHHHHEEEEEEEEEE
T ss_pred             CCCCceEEEECCCh------------------HHHHHHHHHhhcCCEEEEE
Confidence            66689999974321                  1244577889999999864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.22  E-value=0.01  Score=50.98  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=59.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-.    .--++. ++   |..+  .+..+.+.+
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~vi---~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAG---------ASRIIAIDINGEKFPKAKALGATDCL---NPRELDKPVQDVITE  260 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHHHTTCSEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHhCCcEEE---ccccccchHHHHHHH
Confidence            56899999999876 666666776653         2389999987621    001222 22   2221  223344544


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ...+ .+|+|+-..     |.            ...+..+.+.|+++ |++++.
T Consensus       261 ~~~~-g~Dvvid~~-----G~------------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          261 LTAG-GVDYSLDCA-----GT------------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             HHTS-CBSEEEESS-----CC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HhCC-CccEEEECC-----CC------------HHHHHHHHHHhhcCCCEEEEE
Confidence            4443 899999733     11            13456788999999 999864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.22  E-value=0.018  Score=49.29  Aligned_cols=95  Identities=17%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-.    .--++. ++   |..+  .+..+.+.+
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~vi---~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAG---------ASRIIGVGTHKDKFPKAIELGATECL---NPKDYDKPIYEVICE  256 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHHHTTCSEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHHHcCCcEEE---ecccccchHHHHHHH
Confidence            56899999999877 666777777664         2389999987621    001222 22   2221  223344544


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ... +.+|+|+-..     |.            ...+..+.+.|+++ |++++.
T Consensus       257 ~t~-gg~Dvvid~~-----g~------------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          257 KTN-GGVDYAVECA-----GR------------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             HTT-SCBSEEEECS-----CC------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HhC-CCCCEEEECC-----CC------------HHHHHHHHHHHhcCCCEEEEE
Confidence            443 4899999733     11            13456788999999 999864

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.21  E-value=0.025  Score=46.39  Aligned_cols=122  Identities=13%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------------------------------
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------------------------------  107 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------------------------------  107 (229)
                      ...|+++|+-.|+-+..++.....  -++.++..+|++.|.-+ +..                                 
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~--l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGV--YEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHH--HCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCeEEEEecccCHHHHHHHHHHHH--hcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            358999999999988776653210  00111456899998543 100                                 


Q ss_pred             ---------CCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489         108 ---------IDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA  178 (229)
Q Consensus       108 ---------~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG  178 (229)
                               ..+++++ .+++.+  +...+....+..++|+|..|+-.          .   +.....+..+...|+|||
T Consensus       148 ~~~~~~g~~~~~i~li-~G~~~d--TL~~~l~~~~~~~~dlv~ID~D~----------Y---~~t~~~le~~~p~l~~GG  211 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLV-EGDVRE--TVPRYLAENPQTVIALAYFDLDL----------Y---EPTKAVLEAIRPYLTKGS  211 (257)
T ss_dssp             HTTSTTTTSCCSEEEE-ESCHHH--HHHHHHHHCTTCCEEEEEECCCC----------H---HHHHHHHHHHGGGEEEEE
T ss_pred             hhhhhcCCCCCcEEEE-EecHHH--HHHHHHHhCCCCceEEEEEcCcc----------c---chHHHHHHHHHHHhCCCc
Confidence                     0234555 555433  22222222345579999998731          1   123456777889999999


Q ss_pred             EEEEeecCCCChHHHHHHHHhhC
Q psy1489         179 DCLIKIWDGRNRPQLEESITRFY  201 (229)
Q Consensus       179 ~~v~~~~~~~~~~~~~~~l~~~F  201 (229)
                      .+++.-+..+......+.+..++
T Consensus       212 vIv~DD~~~~~w~G~~~A~~ef~  234 (257)
T 3tos_A          212 IVAFDELDNPKWPGENIAMRKVL  234 (257)
T ss_dssp             EEEESSTTCTTCTHHHHHHHHHT
T ss_pred             EEEEcCCCCCCChHHHHHHHHHH
Confidence            99987664333334444444443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.20  E-value=0.0077  Score=51.03  Aligned_cols=95  Identities=12%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-.|+|.  |..+..+++..|          .+|+++|.++- ..+     ++...  -|..+.+..+.+.+.
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~-~~~~~~~lga~~~--~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILN----------FRLIAVTRNNK-HTEELLRLGAAYV--IDTSTAPLYETVMEL  208 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESSST-THHHHHHHTCSEE--EETTTSCHHHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcC----------CEEEEEeCCHH-HHHHHHhCCCcEE--EeCCcccHHHHHHHH
Confidence            57899999999974  667777777664          59999998762 111     22211  233344455556666


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..+..+|+|+....          .        ..+..+.+.|+++|++++.-
T Consensus       209 ~~~~g~Dvvid~~g----------~--------~~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          209 TNGIGADAAIDSIG----------G--------PDGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             TTTSCEEEEEESSC----------H--------HHHHHHHHTEEEEEEEEECC
T ss_pred             hCCCCCcEEEECCC----------C--------hhHHHHHHHhcCCCEEEEEe
Confidence            66668999997442          1        11123447899999998743

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.18  E-value=0.0058  Score=51.88  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++-  .  .--++. ++ ..  .+ +..+.+.+..
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g---------~~~Vi~~~~~~~~~~~~~~lGa~~~i-~~--~~-~~~~~v~~~t  235 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVS---------AARVIAVDLDDDRLALAREVGADAAV-KS--GA-GAADAIRELT  235 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC---------CCEEEEEESCHHHHHHHHHTTCSEEE-EC--ST-THHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCCEEE-cC--CC-cHHHHHHHHh
Confidence            57899999999977 667777777662         369999998861  0  011222 33 11  22 3444555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+-....                 ...+..+.+.|+++|++++.
T Consensus       236 ~g~g~d~v~d~~G~-----------------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          236 GGQGATAVFDFVGA-----------------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GGGCEEEEEESSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCeEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            56689999973321                 13566788999999999864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.18  E-value=0.0041  Score=52.38  Aligned_cols=96  Identities=18%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.| +|+ |..+..+++..|          .+|+++|.++-  ...  -++...  .|..+.+..+.+.+..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALG----------AKLIGTVSSPEKAAHAKALGAWET--IDYSHEDVAKRVLELT  205 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHh
Confidence            57899999999 555 666777777664          58999998751  100  122211  2333444555566666


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+|+|+....     .             ..+..+.+.|+++|++++.-
T Consensus       206 ~~~g~Dvvid~~g-----~-------------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          206 DGKKCPVVYDGVG-----Q-------------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             TTCCEEEEEESSC-----G-------------GGHHHHHTTEEEEEEEEECC
T ss_pred             CCCCceEEEECCC-----h-------------HHHHHHHHHhcCCCEEEEEe
Confidence            6678999997442     1             13455788999999998753

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.18  E-value=0.012  Score=49.77  Aligned_cols=92  Identities=23%  Similarity=0.327  Sum_probs=58.1

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +|++||-+|+|+ |..+..+++..+         ..+|+++|.++  .   ..+ .-.++   |..+.+..+.+.+.. +
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~G---------a~~Vi~~~~~~~~~~~~~~l-a~~v~---~~~~~~~~~~~~~~~-~  229 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASG---------AGPILVSDPNPYRLAFARPY-ADRLV---NPLEEDLLEVVRRVT-G  229 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTT---------CCSEEEECSCHHHHGGGTTT-CSEEE---CTTTSCHHHHHHHHH-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHh-HHhcc---CcCccCHHHHHHHhc-C
Confidence            899999999965 555566666543         22899999875  1   122 22233   333334444455444 5


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+|+|+....     .            ...+..+.+.|+++|++++.
T Consensus       230 ~g~D~vid~~g-----~------------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          230 SGVEVLLEFSG-----N------------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             SCEEEEEECSC-----C------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCC-----C------------HHHHHHHHHHHhcCCEEEEE
Confidence            67999997432     1            13456688899999998864

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.16  E-value=0.013  Score=50.03  Aligned_cols=70  Identities=16%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .+|+||.||.|+++..+.....        ....|+++|+++.      ...++..++ .+|+.+.... .+.    ...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~--------~~~~v~~~E~d~~a~~~~~~N~~~~~~~-~~Di~~~~~~-~~~----~~~   68 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCI--------PAQVVAAIDVNTVANEVYKYNFPHTQLL-AKTIEGITLE-EFD----RLS   68 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTC--------SEEEEEEECCCHHHHHHHHHHCTTSCEE-CSCGGGCCHH-HHH----HHC
T ss_pred             CeEEEeCcCccHHHHHHHHCCC--------CceEEEEEeCCHHHHHHHHHhccccccc-cCCHHHccHh-HcC----cCC
Confidence            5899999999999998876520        0137999999862      123455667 8898874321 122    126


Q ss_pred             ccEEEeCCCC
Q psy1489         137 LDVVLSDMAP  146 (229)
Q Consensus       137 ~D~V~sd~~~  146 (229)
                      +|+|+.+.++
T Consensus        69 ~D~l~~gpPC   78 (343)
T 1g55_A           69 FDMILMSPPC   78 (343)
T ss_dssp             CSEEEECCC-
T ss_pred             cCEEEEcCCC
Confidence            9999998874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.14  E-value=0.012  Score=50.46  Aligned_cols=95  Identities=18%  Similarity=0.232  Sum_probs=58.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++-.    .--++. ++   |..+  .+..+.+.+
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAG---------AKRIIAVDLNPDKFEKAKVFGATDFV---NPNDHSEPISQVLSK  257 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHHHTTCCEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHhCCceEE---eccccchhHHHHHHH
Confidence            56899999999866 566666666653         2389999987611    001232 22   2221  123334444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ... +.+|+|+.....                 ...+..+.+.|+++ |++++.
T Consensus       258 ~~~-~g~D~vid~~g~-----------------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          258 MTN-GGVDFSLECVGN-----------------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             HHT-SCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HhC-CCCCEEEECCCC-----------------HHHHHHHHHHhhcCCcEEEEE
Confidence            443 479999974321                 13456788999999 999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.12  E-value=0.017  Score=50.21  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-  .  .--++..+  -|..+.+..+.+.+...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~i~~~t~  279 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG---------ASKVILSEPSEVRRNLAKELGADHV--IDPTKENFVEAVLDYTN  279 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCHHHHHHHHHHTCSEE--ECTTTSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCCEE--EcCCCCCHHHHHHHHhC
Confidence            57899999999876 666666776653         348999998761  0  00123221  23334445556666666


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +..+|+|+-...     .    ...   .....+..+.+.++++|++++.-
T Consensus       280 g~g~D~vid~~g-----~----~~~---~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          280 GLGAKLFLEATG-----V----PQL---VWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             TCCCSEEEECSS-----C----HHH---HHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCCCCEEEECCC-----C----cHH---HHHHHHHHHHhccCCCcEEEEeC
Confidence            668999997332     1    100   11122222234559999998743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.12  E-value=0.016  Score=49.62  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=58.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-.  ..  -++. ++   |..+  .+..+.+.+
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~G---------a~~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAG---------ASRIIGVDINKDKFARAKEFGATECI---NPQDFSKPIQEVLIE  255 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHHHHTCSEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCceEe---ccccccccHHHHHHH
Confidence            56899999999876 666666777654         2389999987621  00  1222 22   2221  123344544


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ... +.+|+|+....     .            ...+..+.+.|+++ |++++.
T Consensus       256 ~~~-~g~D~vid~~g-----~------------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          256 MTD-GGVDYSFECIG-----N------------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             HTT-SCBSEEEECSC-----C------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HhC-CCCCEEEECCC-----c------------HHHHHHHHHhhccCCcEEEEE
Confidence            443 48999997332     1            13456788999999 999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.0039  Score=53.85  Aligned_cols=97  Identities=16%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCC---ChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFT---QPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~---~~~~~~~i~  129 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++-  .  .--++. ++   |..   +.+..+.+.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~~~~v~  260 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG---------AENVIVIAGSPNRLKLAEEIGADLTL---NRRETSVEERRKAIM  260 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT---------BSEEEEEESCHHHHHHHHHTTCSEEE---ETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC---------CceEEEEcCCHHHHHHHHHcCCcEEE---eccccCcchHHHHHH
Confidence            56899999999766 556666666542         248999998751  1  011222 22   222   334444555


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +...+..+|+|+-...     ..            ..+..+.+.|+++|++++.-
T Consensus       261 ~~~~g~g~Dvvid~~g-----~~------------~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          261 DITHGRGADFILEATG-----DS------------RALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHTTTSCEEEEEECSS-----CT------------THHHHHHHHEEEEEEEEECC
T ss_pred             HHhCCCCCcEEEECCC-----CH------------HHHHHHHHHHhcCCEEEEEe
Confidence            5555557999997432     10            23556888999999998643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.07  E-value=0.0043  Score=53.40  Aligned_cols=97  Identities=16%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHH---
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVT---  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~---  130 (229)
                      +++|++||-+|+|+ |.++..+++..|         ..+|+++|.++-  .  .--++...  -|..+.+..+.+.+   
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAG---------ATTVILSTRQATKRRLAEEVGATAT--VDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCHHHHHHHHHHTCSEE--ECTTSSCHHHHHHSTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCCEE--ECCCCcCHHHHHHhhhh
Confidence            57899999999876 666777777653         348999998861  0  00123221  23334344444443   


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .. ++.+|+|+-...     .            ...+..+.+.|++||++++.-
T Consensus       249 ~~-~gg~Dvvid~~G-----~------------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          249 LV-PGGVDVVIECAG-----V------------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             SS-TTCEEEEEECSC-----C------------HHHHHHHHHHEEEEEEEEECS
T ss_pred             cc-CCCCCEEEECCC-----C------------HHHHHHHHHHhccCCEEEEEe
Confidence            22 347999997331     1            134667888999999998743

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.05  E-value=0.0051  Score=51.35  Aligned_cols=69  Identities=12%  Similarity=0.080  Sum_probs=43.7

Q ss_pred             CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCC-Cc----c----cHHHHHHHHHHHHHHHHHcccCCCEE
Q psy1489         110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGM-RE----M----DHDLITQLAIAVIRFAVTYSKPGADC  180 (229)
Q Consensus       110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~-~~----~----d~~~~~~~~~~~l~~~~~~LkpgG~~  180 (229)
                      ...++ ++|..+      ....+++++||+|++|++...... ..    .    ++...+.....++.++.++|+|||.+
T Consensus        21 ~~~i~-~gD~~~------~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l   93 (297)
T 2zig_A           21 VHRLH-VGDARE------VLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRL   93 (297)
T ss_dssp             CEEEE-ESCHHH------HHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CCEEE-ECcHHH------HHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            45677 888654      223356789999999987532110 00    0    01112233457788999999999999


Q ss_pred             EEeec
Q psy1489         181 LIKIW  185 (229)
Q Consensus       181 v~~~~  185 (229)
                      ++.+-
T Consensus        94 ~i~~~   98 (297)
T 2zig_A           94 VIVVG   98 (297)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.04  E-value=0.0051  Score=51.94  Aligned_cols=95  Identities=15%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.| +|+ |..+..+++..|          .+|+++|.++-  .  .--++...  .|..+.+..+.+.+..
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~~ga~~~--~~~~~~~~~~~~~~~~  213 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKG----------AHTIAVASTDEKLKIAKEYGAEYL--INASKEDILRQVLKFT  213 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHcCCcEE--EeCCCchHHHHHHHHh
Confidence            57899999999 444 556666666543          58999998751  0  00122211  2333444555566656


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+....     .             ..+..+.+.|++||++++.
T Consensus       214 ~~~g~D~vid~~g-----~-------------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          214 NGKGVDASFDSVG-----K-------------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             TTSCEEEEEECCG-----G-------------GGHHHHHHHEEEEEEEEEC
T ss_pred             CCCCceEEEECCC-----h-------------HHHHHHHHHhccCCEEEEE
Confidence            5668999998442     1             1345578899999999874

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.99  E-value=0.03  Score=45.65  Aligned_cols=65  Identities=8%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcc----cHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREM----DHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~----d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .++ ++|..+      ....+++++||+|+.|++.+... ...    .+..........+.++.++|+|||.+++.+
T Consensus         6 ~l~-~gD~~~------~l~~l~~~~vdlI~~DPPY~~~~-~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A            6 KIH-QMNCFD------FLDQVENKSVQLAVIDPPYNLSK-ADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             SEE-ECCHHH------HHHHSCTTCEEEEEECCCCSSCS-SGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEE-echHHH------HHHhccccccCEEEECCCCCCCc-ccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            455 676443      22346678999999999864321 111    233344556778888999999999998865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.97  E-value=0.012  Score=49.89  Aligned_cols=94  Identities=16%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||-+|+|+ |..+..+++..+          .+|+++|.++-  .  .--++...  .|..+.+..+.+.+.. 
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~~--~d~~~~~~~~~~~~~~-  228 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMG----------LNVVAVDIGDEKLELAKELGADLV--VNPLKEDAAKFMKEKV-  228 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTT----------CEEEEECSCHHHHHHHHHTTCSEE--ECTTTSCHHHHHHHHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHCCCCEE--ecCCCccHHHHHHHHh-
Confidence            57899999999965 445555555543          59999998751  1  01123221  2444434444454443 


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ..+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       229 -~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          229 -GGVHAAVVTAVS-----------------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             -SSEEEEEESSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             -CCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEe
Confidence             479999974421                 12456688899999998864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.95  E-value=0.016  Score=49.73  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQ--PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~--~~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |..+..+++..+         ..+|+++|.++-.    .--++. ++   |..+  .+..+.+.+
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~G---------a~~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAG---------AARIIGVDINKDKFAKAKEVGATECV---NPQDYKKPIQEVLTE  256 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHHHTTCSEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHhCCceEe---cccccchhHHHHHHH
Confidence            56899999999876 566666666653         2389999987611    001222 22   2221  223334444


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      ... +.+|+|+....     .            ...+..+.+.|+++ |++++.
T Consensus       257 ~~~-~g~D~vid~~g-----~------------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          257 MSN-GGVDFSFEVIG-----R------------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             HTT-SCBSEEEECSC-----C------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             HhC-CCCcEEEECCC-----C------------HHHHHHHHHHhhcCCcEEEEe
Confidence            333 48999997432     1            13456688899999 999864

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.90  E-value=0.02  Score=48.12  Aligned_cols=120  Identities=20%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             CCeeEeecCCCCchHHHHHH---HHhccCCCCCCCCc--EEEEEeCCCCCCCC-----------------------C--C
Q psy1489          62 GLKVLDCGAAPGSWSQVAVK---LVNSHGYDSKQPKG--LVLSVDKLPIYPID-----------------------G--A  111 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~---~~~~~~~~~~~~~~--~v~gvD~~~~~~~~-----------------------~--~  111 (229)
                      .-+|||+|-|+|.......+   ..+        +..  +.+++|..++...+                       +  +
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~--------~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L  168 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVN--------PKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSL  168 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHC--------TTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEE
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhC--------CCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEE
Confidence            36899999999986544332   222        344  56788865532110                       0  1


Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChH
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP  191 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~  191 (229)
                      .+. .+|+.+     .+.+ +++..||+|+.|+.. +...+++-       ...++..+.++++|||+|+.  |+..  .
T Consensus       169 ~l~-~GDa~~-----~l~~-l~~~~~Da~flDgFs-P~kNPeLW-------s~e~f~~l~~~~~pgg~laT--Ytaa--g  229 (308)
T 3vyw_A          169 KVL-LGDARK-----RIKE-VENFKADAVFHDAFS-PYKNPELW-------TLDFLSLIKERIDEKGYWVS--YSSS--L  229 (308)
T ss_dssp             EEE-ESCHHH-----HGGG-CCSCCEEEEEECCSC-TTTSGGGG-------SHHHHHHHHTTEEEEEEEEE--SCCC--H
T ss_pred             EEE-echHHH-----HHhh-hcccceeEEEeCCCC-cccCcccC-------CHHHHHHHHHHhCCCcEEEE--EeCc--H
Confidence            122 344322     2222 445579999999842 11222211       23678889999999999975  5443  4


Q ss_pred             HHHHHHHhhCCeeEEEc
Q psy1489         192 QLEESITRFYSQVKILK  208 (229)
Q Consensus       192 ~~~~~l~~~F~~v~~~k  208 (229)
                      .+..-|+..=-.|.-.+
T Consensus       230 ~VRR~L~~aGF~V~k~~  246 (308)
T 3vyw_A          230 SVRKSLLTLGFKVGSSR  246 (308)
T ss_dssp             HHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHCCCEEEecC
Confidence            56666777633455443

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.85  E-value=0.15  Score=40.56  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=69.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEE
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV  140 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V  140 (229)
                      .+++||-.|++ |+++..+++.+...      ....|+.+|.++......+.++ ..|+++.+....+.+.+.....|++
T Consensus         3 ~~k~vlITGas-~gIG~~~a~~l~~~------~g~~v~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            3 AMANYLVTGGS-KGIGKAVVELLLQN------KNHTVINIDIQQSFSAENLKFI-KADLTKQQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CCEEEEEETTT-SHHHHHHHHHHTTS------TTEEEEEEESSCCCCCTTEEEE-ECCTTCHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCeEEEeCCC-ChHHHHHHHHHHhc------CCcEEEEeccccccccccceEE-ecCcCCHHHHHHHHHHHHhCCCCEE
Confidence            35677877755 66778888776410      1247888898774345667888 9999998766555555555689999


Q ss_pred             EeCCCCCCC-CCCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         141 LSDMAPNAT-GMREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       141 ~sd~~~~~~-g~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.++..... ...+.+.  +. .++    -....++.+...++++|+++.
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~  124 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVF  124 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEE
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEE
Confidence            998764221 1222221  11 111    111344555566777788765

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.84  E-value=0.012  Score=49.73  Aligned_cols=94  Identities=17%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|+++|.++  ..   .--++...  .|..+.+..+.+.+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKG----------CRVVGIAGGAEKCRFLVEELGFDGA--IDYKNEDLAAGLKRE  214 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCCSEE--EETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHHcCCCEE--EECCCHHHHHHHHHh
Confidence            578999999998 33 566666666543          5999999875  11   11122221  234444455555554


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      . ++.+|+|+....          .        ..+..+.+.|+++|++++.
T Consensus       215 ~-~~~~d~vi~~~g----------~--------~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          215 C-PKGIDVFFDNVG----------G--------EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             C-TTCEEEEEESSC----------H--------HHHHHHHTTEEEEEEEEEC
T ss_pred             c-CCCceEEEECCC----------c--------chHHHHHHHHhhCCEEEEE
Confidence            4 467999998442          1        2456688899999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.84  E-value=0.01  Score=50.35  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      +|++||-+|+|+ |..+..+++..+         ..+|+++|.++-  ...  -++..+  .|..+.+..+.+.+...+.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~G---------a~~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~v~~~~~g~  235 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASG---------AYPVIVSEPSDFRRELAKKVGADYV--INPFEEDVVKEVMDITDGN  235 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT---------CCSEEEECSCHHHHHHHHHHTCSEE--ECTTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEE--ECCCCcCHHHHHHHHcCCC
Confidence            899999999965 555556666543         228999998751  100  122211  2333444445555555455


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       236 g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          236 GVDVFLEFSGA-----------------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             CEEEEEECSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            79999974321                 13456688899999998864

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.82  E-value=0.021  Score=48.25  Aligned_cols=80  Identities=15%  Similarity=0.014  Sum_probs=48.3

Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCccc-HHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-------ChHHHHHHHHhh-
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMD-HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-------NRPQLEESITRF-  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d-~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-------~~~~~~~~l~~~-  200 (229)
                      ..+++++||+|+.|++.+... ...+ +..........+.++.++|+|||.+++.+....       ....+...+... 
T Consensus        52 ~~l~~~svDlI~tDPPY~~~~-d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~l~~l~~~i~~~G  130 (319)
T 1eg2_A           52 AKLPDDSVQLIICDPPYNIML-ADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNS  130 (319)
T ss_dssp             HTSCTTCEEEEEECCCSBCCG-GGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHC
T ss_pred             HhCccCCcCEEEECCCCCCCC-CCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccccccccccHHHHHHHHhCcc
Confidence            346778999999999864320 0000 111233456778889999999999998764321       124455555433 


Q ss_pred             -C---CeeEEEcCC
Q psy1489         201 -Y---SQVKILKPP  210 (229)
Q Consensus       201 -F---~~v~~~kp~  210 (229)
                       |   ..+.+.|+.
T Consensus       131 ~~~~~~~IIW~K~~  144 (319)
T 1eg2_A          131 KMLLANLIIWNYPN  144 (319)
T ss_dssp             CCEEEEEEEEECSC
T ss_pred             cceeEEEEEEECCC
Confidence             3   345566764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.76  E-value=0.01  Score=50.40  Aligned_cols=92  Identities=22%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCe-EEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAV-VLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~-~~~~~D~~~~~~~~~i~~  130 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|++++.++- ..     -++. ++ ..  . .+..+.+.+
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~G----------a~Vi~~~~~~~-~~~~~~~~ga~~v~-~~--~-~~~~~~v~~  221 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMG----------AKVIAVVNRTA-ATEFVKSVGADIVL-PL--E-EGWAKAVRE  221 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESSGG-GHHHHHHHTCSEEE-ES--S-TTHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcC----------CEEEEEeCCHH-HHHHHHhcCCcEEe-cC--c-hhHHHHHHH
Confidence            578999999998 44 666677777654          59999998761 11     1222 23 22  2 334455666


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ...+..+|+|+....     .             ..+..+.+.|+++|++++.
T Consensus       222 ~~~~~g~Dvvid~~g-----~-------------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          222 ATGGAGVDMVVDPIG-----G-------------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             HTTTSCEEEEEESCC--------------------CHHHHHHTEEEEEEEEEC
T ss_pred             HhCCCCceEEEECCc-----h-------------hHHHHHHHhhcCCCEEEEE
Confidence            555668999997442     1             1245578899999999864

>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A

Probab=95.75  E-value=0.21  Score=48.50  Aligned_cols=93  Identities=19%  Similarity=0.312  Sum_probs=65.8

Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee-cCCCC-hHHHHHHHHhhCCeeEEEc
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI-WDGRN-RPQLEESITRFYSQVKILK  208 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~-~~~~~-~~~~~~~l~~~F~~v~~~k  208 (229)
                      .++.+.|.+|.||.---..|..+.+.  .-+.....+..+..+..+||.+++|+ |.... +..+...+..+|..+.+.|
T Consensus       569 p~pTGtf~fVYSDVDQV~d~~~Dl~A--s~r~~~~~l~~~l~~ts~GG~~v~KiNFPT~~vw~~if~~~~~~~~~~~i~K  646 (1299)
T 3iyl_W          569 AVPTGTFGLVYADLDQVEDAGTDMPA--ANRAAIAMLGTALQMTTAGGVSVLKVNFPTRAFWTQVFNLYATHATTLHLVK  646 (1299)
T ss_dssp             CCCCCCEEEEEECCCCC-----CCHH--HHHHHHHHHHHHHHHEEEEEEEEEEESCCCTTHHHHHHHHTTTTCSCEEEEE
T ss_pred             cCCCCceEEEEecchhhccCCcchhh--hhHHHHHHHHHHHHhhcCCceEEEEEcCCchHHHHHHHHHhcchhheeeeec
Confidence            37789999999987432223233322  22345577888999999999999998 54443 3455566677799999999


Q ss_pred             CCCCCCCCceEEEEeccCC
Q psy1489         209 PPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       209 p~~sr~~s~E~Y~v~~~~~  227 (229)
                      |--  .+|.|.|+|+-++.
T Consensus       647 Pli--~NnvEvf~v~~~r~  663 (1299)
T 3iyl_W          647 PTI--VNSSEVFLVFGGRQ  663 (1299)
T ss_dssp             CCS--SSCCCEEEEESCCC
T ss_pred             cee--ecceEEEEEEeeec
Confidence            844  68999999988764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.69  E-value=0.035  Score=46.84  Aligned_cols=98  Identities=13%  Similarity=0.044  Sum_probs=60.0

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      .++|++||-.|+|+ |.++..+++..+         ...++++|.++-  .  .--++ ..+   |..+.+..+.+...-
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G---------~~~vi~~~~~~~k~~~a~~lGa~~~i---~~~~~~~~~~~~~~~  225 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALG---------AKSVTAIDISSEKLALAKSFGAMQTF---NSSEMSAPQMQSVLR  225 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHHHTTCSEEE---ETTTSCHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcC---------CcEEEEEechHHHHHHHHHcCCeEEE---eCCCCCHHHHHHhhc
Confidence            56899999999987 455666666653         357789998861  1  11122 233   333333333343334


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      ....+|+|+....     .            ...+..+.+.|++||++++.-.
T Consensus       226 ~~~g~d~v~d~~G-----~------------~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          226 ELRFNQLILETAG-----V------------PQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             GGCSSEEEEECSC-----S------------HHHHHHHHHHCCTTCEEEECCC
T ss_pred             ccCCccccccccc-----c------------cchhhhhhheecCCeEEEEEec
Confidence            4567898886331     1            1346668889999999987543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.54  E-value=0.017  Score=49.26  Aligned_cols=95  Identities=14%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|+++|.++-  ..  --++...  .|..+.+..+.+.+..
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~~ga~~~--~d~~~~~~~~~~~~~~  235 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYG----------LKILGTAGTEEGQKIVLQNGAHEV--FNHREVNYIDKIKKYV  235 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCSEE--EETTSTTHHHHHHHHH
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCC----------CEEEEEeCChhHHHHHHHcCCCEE--EeCCCchHHHHHHHHc
Confidence            568999999997 32 444555555443          58999998751  10  0122221  2444444455565555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+....          .        ..+..+.+.|+++|++++.
T Consensus       236 ~~~~~D~vi~~~G----------~--------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          236 GEKGIDIIIEMLA----------N--------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CTTCEEEEEESCH----------H--------HHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCcEEEEECCC----------h--------HHHHHHHHhccCCCEEEEE
Confidence            5567999998441          0        2345678899999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.33  E-value=0.0053  Score=52.13  Aligned_cols=93  Identities=6%  Similarity=-0.007  Sum_probs=55.5

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +|++||-+|+|+ |.++..+++...        +..+|+++|.++-  ...  -++. ++   |..+.  .+.+.+...+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~--------~Ga~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~--~~~~~~~~~g  236 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALM--------KNITIVGISRSKKHRDFALELGADYVS---EMKDA--ESLINKLTDG  236 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHC--------TTCEEEEECSCHHHHHHHHHHTCSEEE---CHHHH--HHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhc--------CCCEEEEEeCCHHHHHHHHHhCCCEEe---ccccc--hHHHHHhhcC
Confidence            899999999976 666677777661        1268999998751  001  1222 22   21110  1112222334


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       237 ~g~D~vid~~g~-----------------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          237 LGASIAIDLVGT-----------------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             CCEEEEEESSCC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCccEEEECCCC-----------------hHHHHHHHHHhhcCCEEEEe
Confidence            479999974321                 12456688899999999864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.33  E-value=0.018  Score=48.70  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=58.5

Q ss_pred             cCCCCeeEeecC-C-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-A-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-G-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ | -|..+..+++..+          .+|+++|.++-  ...  -++...  .|..+.+..+.+.+..
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G----------~~Vi~~~~~~~~~~~~~~~ga~~~--~d~~~~~~~~~~~~~~  231 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFG----------ARVIATAGSEDKLRRAKALGADET--VNYTHPDWPKEVRRLT  231 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHHTCSEE--EETTSTTHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHhcCCCEE--EcCCcccHHHHHHHHh
Confidence            568999999998 3 3555555665543          58999998751  101  122221  2444444444555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+|+|+.....                  ..+..+.+.|+++|++++.
T Consensus       232 ~~~~~d~vi~~~g~------------------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          232 GGKGADKVVDHTGA------------------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             TTTCEEEEEESSCS------------------SSHHHHHHHEEEEEEEEES
T ss_pred             CCCCceEEEECCCH------------------HHHHHHHHhhccCCEEEEE
Confidence            45579999985531                  1234577889999998864

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=95.28  E-value=0.091  Score=39.61  Aligned_cols=101  Identities=13%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---CCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---IDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ..-|||||-|.|.---++.+.+         |...|+.+|..- ..+   .+.-.++ ++|+.+.  .......+ +...
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~---------P~R~I~vfDR~~~~hp~~~P~~e~~i-lGdi~~t--L~~~~~r~-g~~a  107 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHV---------QGREIYVFERAVASHPDSTPPEAQLI-LGDIRET--LPATLERF-GATA  107 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHC---------CSSCEEEEESSCCCCGGGCCCGGGEE-ESCHHHH--HHHHHHHH-CSCE
T ss_pred             CCceEEecCCCChhHHHHHHhC---------CCCcEEEEEeeeccCCCCCCchHhee-cccHHHH--HHHHHHhc-CCce
Confidence            3579999999999999999988         678999999753 111   2334567 8987662  22222234 6678


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      -++.+|...   |.++    ........+-..+..+|.|||.++-
T Consensus       108 ~LaHaD~G~---g~~~----~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A          108 SLVHADLGG---HNRE----KNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             EEEEECCCC---SCHH----HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEeecCC---CCcc----hhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            888898743   3322    2223333344567789999998875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.16  E-value=0.018  Score=48.41  Aligned_cols=95  Identities=15%  Similarity=0.140  Sum_probs=58.2

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ |. |..+..+++..+          .+|+++|.++-  ...  -++...  .|..+.+..+.+.+..
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G----------~~V~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~  205 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALG----------AKLIGTVGTAQKAQSALKAGAWQV--INYREEDLVERLKEIT  205 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCEE--EECCCccHHHHHHHHh
Confidence            568999999994 33 545555555543          58999998751  100  122221  2444444445555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ....+|+|+.....                  ..+..+.+.|+++|++++.
T Consensus       206 ~~~~~D~vi~~~g~------------------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          206 GGKKVRVVYDSVGR------------------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             TTCCEEEEEECSCG------------------GGHHHHHHTEEEEEEEEEC
T ss_pred             CCCCceEEEECCch------------------HHHHHHHHHhcCCCEEEEE
Confidence            55679999985421                  1345678899999999864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.14  E-value=0.058  Score=46.10  Aligned_cols=93  Identities=14%  Similarity=0.068  Sum_probs=58.8

Q ss_pred             CCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +|++||-.| +|+ |.++..+++..+         ..+|+++|.++-  .  .--++..+  -|..+ +..+.+.+. ..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~---------g~~Vi~~~~~~~~~~~~~~lGad~v--i~~~~-~~~~~v~~~-~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT---------DLTVIATASRPETQEWVKSLGAHHV--IDHSK-PLAAEVAAL-GL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC---------CSEEEEECSSHHHHHHHHHTTCSEE--ECTTS-CHHHHHHTT-CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHcCCCEE--EeCCC-CHHHHHHHh-cC
Confidence            789999998 777 777777787642         369999998751  0  01123222  12222 233444443 55


Q ss_pred             CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.+|+|+....          .       ...+..+.+.|+++|++++.
T Consensus       238 ~g~Dvvid~~g----------~-------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          238 GAPAFVFSTTH----------T-------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CCEEEEEECSC----------H-------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceEEEECCC----------c-------hhhHHHHHHHhcCCCEEEEE
Confidence            68999997331          0       13566788899999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.022  Score=48.28  Aligned_cols=95  Identities=24%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             cCCCCeeEeecCC--CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--C--CCCCeEEecCCCC-ChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAA--PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--P--IDGAVVLSKCDFT-QPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcG--pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~--~~~~~~~~~~D~~-~~~~~~~i~~~  131 (229)
                      +++|++||.+|++  -|..+..+++..+          .+|+++|.++-.  .  --++...  .|.. +.+..+.+.+.
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G----------a~V~~~~~~~~~~~~~~~~g~~~~--~d~~~~~~~~~~~~~~  234 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMG----------YRVLGIDGGEGKEELFRSIGGEVF--IDFTKEKDIVGAVLKA  234 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEEECSTTHHHHHHHTTCCEE--EETTTCSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCC----------CcEEEEcCCHHHHHHHHHcCCceE--EecCccHhHHHHHHHH
Confidence            5689999999983  2444445555433          589999987611  0  0122222  2444 23334445544


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ... .+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       235 ~~~-~~D~vi~~~g~-----------------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          235 TDG-GAHGVINVSVS-----------------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             HTS-CEEEEEECSSC-----------------HHHHHHHTTSEEEEEEEEEC
T ss_pred             hCC-CCCEEEECCCc-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            444 79999985421                 13466788999999998864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.04  E-value=0.019  Score=48.94  Aligned_cols=95  Identities=15%  Similarity=0.083  Sum_probs=58.5

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.| +|+ |..+..+++..|          .+|+++|.++-  ...  -++...  .|..+.+....+.+..
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~~--~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFG----------AEVYATAGSTGKCEACERLGAKRG--INYRSEDFAAVIKAET  232 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHhcCCCEE--EeCCchHHHHHHHHHh
Confidence            57899999994 454 666666666554          58999998751  000  122211  2333444444555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ...+|+|+....     .             ..+..+.+.|+++|++++.-
T Consensus       233 -~~g~Dvvid~~g-----~-------------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          233 -GQGVDIILDMIG-----A-------------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             -SSCEEEEEESCC-----G-------------GGHHHHHHTEEEEEEEEECC
T ss_pred             -CCCceEEEECCC-----H-------------HHHHHHHHHhccCCEEEEEE
Confidence             668999998442     1             12455788999999988643

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=94.98  E-value=0.042  Score=52.14  Aligned_cols=94  Identities=17%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|++++.++-   ..+..-.++   |..+.+..+.+.+...
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~G----------a~V~~t~~~~k~~~l~lga~~v~---~~~~~~~~~~i~~~t~  409 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLG----------AEVYATASEDKWQAVELSREHLA---SSRTCDFEQQFLGATG  409 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTT----------CCEEEECCGGGGGGSCSCGGGEE---CSSSSTHHHHHHHHSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcC----------CEEEEEeChHHhhhhhcChhhee---ecCChhHHHHHHHHcC
Confidence            578999999995 55 777788888765          58999886541   111111222   3344455566666666


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+|+.....                  ..+..+.+.|+|+|+|+..
T Consensus       410 g~GvDvVld~~gg------------------~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          410 GRGVDVVLNSLAG------------------EFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             SSCCSEEEECCCT------------------TTTHHHHTSCTTCEEEEEC
T ss_pred             CCCeEEEEECCCc------------------HHHHHHHHHhcCCCEEEEe
Confidence            7789999984321                  1234588899999999863

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.97  E-value=0.026  Score=48.27  Aligned_cols=94  Identities=18%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.| +|+ |..+..+++..+          .+|+++|.++-  ...  -++..+  .|..+.+..+.+.+..
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G----------a~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAK----------CHVIGTCSSDEKSAFLKSLGCDRP--INYKTEPVGTVLKQEY  228 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHHHHcCCcEE--EecCChhHHHHHHHhc
Confidence            57899999999 455 666666666654          58999998751  100  122221  1222333334444433


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       +..+|+|+....     .             ..+..+.+.|+++|++++.
T Consensus       229 -~~g~D~vid~~g-----~-------------~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          229 -PEGVDVVYESVG-----G-------------AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             -TTCEEEEEECSC-----T-------------HHHHHHHHHEEEEEEEEEC
T ss_pred             -CCCCCEEEECCC-----H-------------HHHHHHHHHHhcCCEEEEE
Confidence             457999997432     1             2345678899999998864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.85  E-value=0.015  Score=49.64  Aligned_cols=96  Identities=11%  Similarity=0.102  Sum_probs=57.3

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ |+ |..+..+++..+          .+|+++|.++-  ...  -++...  .|..+.+..+.+.+..
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G----------a~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~  227 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAG----------AIPLVTAGSQKKLQMAEKLGAAAG--FNYKKEDFSEATLKFT  227 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCcEE--EecCChHHHHHHHHHh
Confidence            568999999984 33 444444554433          58999998751  100  122221  2344444445555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ....+|+|+.....                  ..+..+.+.|+++|++++.-
T Consensus       228 ~~~~~d~vi~~~G~------------------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          228 KGAGVNLILDCIGG------------------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TTSCEEEEEESSCG------------------GGHHHHHHHEEEEEEEEECC
T ss_pred             cCCCceEEEECCCc------------------hHHHHHHHhccCCCEEEEEe
Confidence            55679999985421                  12445778899999998743

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.82  E-value=0.024  Score=48.11  Aligned_cols=92  Identities=14%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+| +|+ |..+..+++..+          .+|+++ .++-  .  .--++..+ .   .+.+..+.+.+..
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~G----------a~Vi~~-~~~~~~~~~~~lGa~~i-~---~~~~~~~~~~~~~  212 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARG----------ARVFAT-ARGSDLEYVRDLGATPI-D---ASREPEDYAAEHT  212 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEE-ECHHHHHHHHHHTSEEE-E---TTSCHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCC----------CEEEEE-eCHHHHHHHHHcCCCEe-c---cCCCHHHHHHHHh
Confidence            56899999999 455 666677776654          589988 5541  0  00133334 2   2333444455555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+.....                  ..+..+.+.|+++|++++.
T Consensus       213 ~~~g~D~vid~~g~------------------~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          213 AGQGFDLVYDTLGG------------------PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             TTSCEEEEEESSCT------------------HHHHHHHHHEEEEEEEEES
T ss_pred             cCCCceEEEECCCc------------------HHHHHHHHHHhcCCeEEEE
Confidence            66789999974321                  1355678889999999864

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=94.64  E-value=0.034  Score=46.12  Aligned_cols=111  Identities=9%  Similarity=-0.030  Sum_probs=64.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +..+||+=+|+|.++..++..           ..+++.+|.++-         ....+++++ +.|...     .+....
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~-----------~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~-~~D~~~-----~L~~l~  154 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS-----------QDRLYLCELHPTEYNFLLKLPHFNKKVYVN-HTDGVS-----KLNALL  154 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT-----------TSEEEEECCSHHHHHHHTTSCCTTSCEEEE-CSCHHH-----HHHHHC
T ss_pred             CCCceeEeCCcHHHHHHHcCC-----------CCeEEEEeCCHHHHHHHHHHhCcCCcEEEE-eCcHHH-----HHHHhc
Confidence            567999999999999887652           268999999861         122356677 666332     233333


Q ss_pred             C-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee--cCCCChHHHHHHHH
Q psy1489         133 K-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI--WDGRNRPQLEESIT  198 (229)
Q Consensus       133 ~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~--~~~~~~~~~~~~l~  198 (229)
                      + ..+||+|+.|++....     +.+   ......+.. ...+.|+|.+++=-  ........+.+.+.
T Consensus       155 ~~~~~fdLVfiDPPYe~k-----~~~---~~vl~~L~~-~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~  214 (283)
T 2oo3_A          155 PPPEKRGLIFIDPSYERK-----EEY---KEIPYAIKN-AYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  214 (283)
T ss_dssp             SCTTSCEEEEECCCCCST-----THH---HHHHHHHHH-HHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCccEEEECCCCCCC-----cHH---HHHHHHHHH-hCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence            3 3479999999975211     111   111122222 23567899887521  11223455555554

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.64  E-value=0.02  Score=48.21  Aligned_cols=94  Identities=17%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCC-hhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQ-PDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~-~~~~~~i~~~  131 (229)
                      +++|++||..|++.  |..+..++...|          .+|+++|.++-  ...  -++..  ..|..+ .+....+.+.
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G----------~~V~~~~~~~~~~~~~~~~g~~~--~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKG----------CKVVGAAGSDEKIAYLKQIGFDA--AFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCSE--EEETTSCSCHHHHHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHhcCCcE--EEecCCHHHHHHHHHHH
Confidence            56899999999832  444444444433          58999998751  100  12222  124444 3344445444


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .. +.+|+|+.+..          .        ..+..+.+.|++||++++.
T Consensus       211 ~~-~~~d~vi~~~g----------~--------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          211 SP-DGYDCYFDNVG----------G--------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             CT-TCEEEEEESSC----------H--------HHHHHHHTTEEEEEEEEEC
T ss_pred             hC-CCCeEEEECCC----------h--------HHHHHHHHHHhcCCEEEEE
Confidence            33 57999998552          1        1356688999999999864

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.59  E-value=0.02  Score=46.79  Aligned_cols=34  Identities=32%  Similarity=0.356  Sum_probs=28.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+|+.|||..||+|..+..+.+. +          .+++|+|+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~-g----------r~~ig~e~~~  244 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL-G----------RNFIGCDMNA  244 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT-T----------CEEEEEESCH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc-C----------CeEEEEeCCH
Confidence            57899999999999998886654 3          5899999987

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.59  E-value=0.4  Score=37.99  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=63.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHH----HhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT----ILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~----~~~~~~  136 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.+|.++........++ ..|+++.+....+.+    .+..+.
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~~~~g~   76 (241)
T 1dhr_A            6 EARRVLVYGG-RGALGSRCVQAFRA-------RNWWVASIDVVENEEASASVIV-KMTDSFTEQADQVTAEVGKLLGDQK   76 (241)
T ss_dssp             CCCEEEEETT-TSHHHHHHHHHHHT-------TTCEEEEEESSCCTTSSEEEEC-CCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHh-------CCCEEEEEeCChhhccCCcEEE-EcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4677887774 56778888877642       2358999998762222234566 899998764433322    221147


Q ss_pred             ccEEEeCCCCCCCC-C-Cccc--HH-HHHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         137 LDVVLSDMAPNATG-M-REMD--HD-LITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       137 ~D~V~sd~~~~~~g-~-~~~d--~~-~~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +|+++.++.....+ . .+.+  .+ ..++    -....++.+...++++|+++.
T Consensus        77 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~  131 (241)
T 1dhr_A           77 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTL  131 (241)
T ss_dssp             EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEE
Confidence            99999987642211 1 1111  11 1111    112344555666666788775

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.57  E-value=0.014  Score=50.17  Aligned_cols=90  Identities=17%  Similarity=0.119  Sum_probs=54.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |.++..+++..+          .+|+++|.++- ..     -++..+  -|..+.+.   +.. +
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~G----------a~Vi~~~~~~~-~~~~a~~lGa~~v--i~~~~~~~---~~~-~  254 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMG----------AHVVAFTTSEA-KREAAKALGADEV--VNSRNADE---MAA-H  254 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESSGG-GHHHHHHHTCSEE--EETTCHHH---HHT-T
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCHH-HHHHHHHcCCcEE--eccccHHH---HHH-h
Confidence            57899999999876 666666676654          57999998761 11     122211  12333321   222 2


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      . ..+|+|+....     ..            ..+..+.+.|+++|++++.
T Consensus       255 ~-~g~Dvvid~~g-----~~------------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          255 L-KSFDFILNTVA-----AP------------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             T-TCEEEEEECCS-----SC------------CCHHHHHTTEEEEEEEEEC
T ss_pred             h-cCCCEEEECCC-----CH------------HHHHHHHHHhccCCEEEEe
Confidence            2 47999997432     11            1244578899999998864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.49  E-value=0.026  Score=48.12  Aligned_cols=94  Identities=12%  Similarity=0.060  Sum_probs=55.9

Q ss_pred             cCCC------CeeEeecCCC-CchH-HHHH-HHHhccCCCCCCCCcEEEEEeCCCCC--CC-----CCCeEEecCCCCCh
Q psy1489          59 LRPG------LKVLDCGAAP-GSWS-QVAV-KLVNSHGYDSKQPKGLVLSVDKLPIY--PI-----DGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g------~~VLDlGcGp-G~~s-~~la-~~~~~~~~~~~~~~~~v~gvD~~~~~--~~-----~~~~~~~~~D~~~~  122 (229)
                      +++|      ++||-+|+|+ |.++ ..++ +..+         ..+|+++|.++-.  ..     -++..  . |..+.
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G---------a~~Vi~~~~~~~~~~~~~~~~~lGa~~--v-~~~~~  231 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG---------YENLYCLGRRDRPDPTIDIIEELDATY--V-DSRQT  231 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC---------CCEEEEEECCCSSCHHHHHHHHTTCEE--E-ETTTS
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC---------CcEEEEEeCCcccHHHHHHHHHcCCcc--c-CCCcc
Confidence            4578      9999999855 4444 4555 4432         2249999987620  11     13332  2 33333


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +..+ +.+. .+ .+|+|+-..     |.            ...+..+.+.|+++|++++.-
T Consensus       232 ~~~~-i~~~-~g-g~Dvvid~~-----g~------------~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          232 PVED-VPDV-YE-QMDFIYEAT-----GF------------PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             CGGG-HHHH-SC-CEEEEEECS-----CC------------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CHHH-HHHh-CC-CCCEEEECC-----CC------------hHHHHHHHHHHhcCCEEEEEe
Confidence            3333 4444 34 899999733     21            124566888999999998743

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.43  E-value=0.048  Score=46.03  Aligned_cols=93  Identities=11%  Similarity=0.156  Sum_probs=56.6

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---C-CCCCCeEEecCCCCCh-hHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---Y-PIDGAVVLSKCDFTQP-DIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---~-~~~~~~~~~~~D~~~~-~~~~~i~  129 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|+++|.++  .   . .+ ++...  .|..+. +....+.
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G----------~~V~~~~~~~~~~~~~~~~~-g~~~~--~d~~~~~~~~~~~~  219 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMG----------CYVVGSAGSKEKVDLLKTKF-GFDDA--FNYKEESDLTAALK  219 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTS-CCSEE--EETTSCSCSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHHc-CCceE--EecCCHHHHHHHHH
Confidence            568999999997 33 555555555543          5899999875  1   1 12 23221  233321 2333344


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ... ++.+|+|+....          .        ..+..+.+.|++||++++.
T Consensus       220 ~~~-~~~~d~vi~~~g----------~--------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          220 RCF-PNGIDIYFENVG----------G--------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HHC-TTCEEEEEESSC----------H--------HHHHHHHTTEEEEEEEEEC
T ss_pred             HHh-CCCCcEEEECCC----------H--------HHHHHHHHHHhcCCEEEEE
Confidence            433 357999998542          1        2456688899999999863

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.40  E-value=0.038  Score=46.79  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHH-hccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLV-NSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~-~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-.|+|.  |..+..+++.. +          .+|+++|.++-  ...  -++...  .|..+.+..+.+.+.
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~G----------a~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSG----------ATIIGVDVREEAVEAAKRAGADYV--INASMQDPLAEIRRI  235 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC----------CEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCC----------CeEEEEcCCHHHHHHHHHhCCCEE--ecCCCccHHHHHHHH
Confidence            56899999999973  44555555554 4          58999998751  101  122211  233333333344444


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ...+.+|+|+.....                 ...+..+.+.|+++|++++.
T Consensus       236 ~~~~~~d~vi~~~g~-----------------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          236 TESKGVDAVIDLNNS-----------------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             TTTSCEEEEEESCCC-----------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             hcCCCceEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence            332479999985431                 12456688999999999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.31  E-value=0.082  Score=44.73  Aligned_cols=90  Identities=19%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             CCCeeEee-cCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDC-GAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDl-GcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +|++||-. |+|+ |.++..+++..|          .+|+++|.++-  ...  -++. ++   |..+ +..+.+.+. .
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~-~~~~~~~~~-~  214 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYG----------LRVITTASRNETIEWTKKMGADIVL---NHKE-SLLNQFKTQ-G  214 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT----------CEEEEECCSHHHHHHHHHHTCSEEE---CTTS-CHHHHHHHH-T
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHhcCCcEEE---ECCc-cHHHHHHHh-C
Confidence            79999999 5666 666667776653          59999998751  000  1222 22   2222 234445544 5


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ...+|+|+....          .       ...+..+.+.|+++|+++.
T Consensus       215 ~~g~Dvv~d~~g----------~-------~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          215 IELVDYVFCTFN----------T-------DMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             CCCEEEEEESSC----------H-------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCccEEEECCC----------c-------hHHHHHHHHHhccCCEEEE
Confidence            668999997331          1       1345668889999999975

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.27  E-value=0.031  Score=47.38  Aligned_cols=86  Identities=17%  Similarity=0.114  Sum_probs=55.1

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |.++..+++..+          .+|+++|.++- ..     -++..+ .   .+.+       .+
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~G----------a~Vi~~~~~~~-~~~~~~~lGa~~v-~---~~~~-------~~  231 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMG----------AEVSVFARNEH-KKQDALSMGVKHF-Y---TDPK-------QC  231 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTT----------CEEEEECSSST-THHHHHHTTCSEE-E---SSGG-------GC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC----------CeEEEEeCCHH-HHHHHHhcCCCee-c---CCHH-------HH
Confidence            57899999999876 666777777654          58999998872 11     133333 2   1211       12


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .. .+|+|+....     ..            ..+..+.+.|+++|++++.-
T Consensus       232 ~~-~~D~vid~~g-----~~------------~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          232 KE-ELDFIISTIP-----TH------------YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             CS-CEEEEEECCC-----SC------------CCHHHHHTTEEEEEEEEECC
T ss_pred             hc-CCCEEEECCC-----cH------------HHHHHHHHHHhcCCEEEEEC
Confidence            22 7999996332     11            12455888999999998753

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.23  E-value=0.41  Score=37.77  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHH----HhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT----ILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~----~~~~~~~  137 (229)
                      +++||-.|+ +|+++..+++.+..       ...+|+.+|.++........++ ..|+++.+....+.+    .+..+.+
T Consensus         3 ~k~vlITGa-s~gIG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~g~i   73 (236)
T 1ooe_A            3 SGKVIVYGG-KGALGSAILEFFKK-------NGYTVLNIDLSANDQADSNILV-DGNKNWTEQEQSILEQTASSLQGSQV   73 (236)
T ss_dssp             CEEEEEETT-TSHHHHHHHHHHHH-------TTEEEEEEESSCCTTSSEEEEC-CTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHH-------CCCEEEEEecCccccccccEEE-eCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence            456777775 56677777776642       2358999998762222234566 899998764433322    2222579


Q ss_pred             cEEEeCCCC
Q psy1489         138 DVVLSDMAP  146 (229)
Q Consensus       138 D~V~sd~~~  146 (229)
                      |+|+.++..
T Consensus        74 d~lv~~Ag~   82 (236)
T 1ooe_A           74 DGVFCVAGG   82 (236)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.21  E-value=0.02  Score=50.59  Aligned_cols=97  Identities=19%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEe--cCCC--------CC
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLS--KCDF--------TQ  121 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~--~~D~--------~~  121 (229)
                      +++|++||-+|+ |+ |.++..+++..|          .+|++++.++-  ...  -++. ++.  ..|+        .+
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~G----------a~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~  295 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGG----------ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQD  295 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcC----------CeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccc
Confidence            578999999998 65 667777777654          58888887641  000  1222 220  1111        11


Q ss_pred             h----hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         122 P----DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       122 ~----~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .    ...+.+.+...+..+|+|+-..     |     .        ..+..+.+.|++||++++.
T Consensus       296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~-----G-----~--------~~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          296 PKEWKRFGKRIRELTGGEDIDIVFEHP-----G-----R--------ETFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHHHHHHHHHHHHHTSCCEEEEEECS-----C-----H--------HHHHHHHHHEEEEEEEEES
T ss_pred             hHHHHHHHHHHHHHhCCCCCcEEEEcC-----C-----c--------hhHHHHHHHhhCCcEEEEE
Confidence            1    1124455555567899999733     2     1        2456688899999999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.12  E-value=0.057  Score=45.38  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=57.9

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ |+ |..+..+++..+          .+|+++|.++-  ...  -++...  .|..+.+..+.+.+..
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G----------~~Vi~~~~~~~~~~~~~~~g~~~~--~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLG----------ATVIGTVSTEEKAETARKLGCHHT--INYSTQDFAEVVREIT  210 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHcCCCEE--EECCCHHHHHHHHHHh
Confidence            568999999996 32 444445555443          58999998751  100  122221  2444444444555555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ....+|+|+....     .             ..+..+.+.|+++|++++.-
T Consensus       211 ~~~~~d~vi~~~g-----~-------------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          211 GGKGVDVVYDSIG-----K-------------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             TTCCEEEEEECSC-----T-------------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCeEEEECCc-----H-------------HHHHHHHHhhccCCEEEEEe
Confidence            4567999997542     1             12455788999999988643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.10  E-value=0.046  Score=46.43  Aligned_cols=95  Identities=11%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             cCCC--CeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPG--LKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g--~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|  ++||-.|+ |+ |..+..+++..|         ..+|+++|.++-  .   ..-++...  .|..+.+..+.+.
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~G---------a~~Vi~~~~~~~~~~~~~~~~g~~~~--~d~~~~~~~~~~~  224 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLG---------CSRVVGICGTHEKCILLTSELGFDAA--INYKKDNVAEQLR  224 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHHHTSCCSEE--EETTTSCHHHHHH
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCC---------CCeEEEEeCCHHHHHHHHHHcCCceE--EecCchHHHHHHH
Confidence            5678  99999998 32 444444555433         228999998751  1   10122221  2444444444555


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +...+ .+|+|+....          .        ..+..+.+.|+++|++++.
T Consensus       225 ~~~~~-~~d~vi~~~G----------~--------~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          225 ESCPA-GVDVYFDNVG----------G--------NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             HHCTT-CEEEEEESCC----------H--------HHHHHHHHTEEEEEEEEEC
T ss_pred             HhcCC-CCCEEEECCC----------H--------HHHHHHHHHhccCcEEEEE
Confidence            54444 7999998542          1        2456688899999999864

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.00  E-value=0.14  Score=43.28  Aligned_cols=72  Identities=8%  Similarity=0.021  Sum_probs=46.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCC-CcEE-EEEeCCCCC------CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQP-KGLV-LSVDKLPIY------PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~-~~~v-~gvD~~~~~------~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ...+|+||.||.|+++..+.+. |        - ...| .++|+++..      ..+.. .+ .+|+.+.... .+.   
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~a-G--------~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~-~~DI~~~~~~-~i~---   73 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERS-S--------ININATFIPFDINEIANKIYSKNFKEE-VQ-VKNLDSISIK-QIE---   73 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHS-S--------CCCCEEEEEECCCHHHHHHHHHHHCCC-CB-CCCTTTCCHH-HHH---
T ss_pred             CCCEEEEECCChhHHHHHHHHc-C--------CCceEEEEEEECCHHHHHHHHHHCCCC-cc-cCChhhcCHH-Hhc---
Confidence            3468999999999999886643 2        1 1256 799998721      12232 45 7898876432 222   


Q ss_pred             CCCCccEEEeCCCCCC
Q psy1489         133 KDDKLDVVLSDMAPNA  148 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~  148 (229)
                       ...+|+++...++..
T Consensus        74 -~~~~Dil~ggpPCQ~   88 (327)
T 3qv2_A           74 -SLNCNTWFMSPPCQP   88 (327)
T ss_dssp             -HTCCCEEEECCCCTT
T ss_pred             -cCCCCEEEecCCccC
Confidence             236999999776543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.00  E-value=0.21  Score=42.63  Aligned_cols=91  Identities=18%  Similarity=0.281  Sum_probs=57.1

Q ss_pred             CCCCeeEeecC-C-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCe-EEecCCCCChhHHHHHHHH
Q psy1489          60 RPGLKVLDCGA-A-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAV-VLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        60 ~~g~~VLDlGc-G-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~-~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++|++||-+|+ | -|..+..+++..|          .+|+++. ++ ...     -++. ++   |..+.+..+.+.+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G----------a~Vi~~~-~~-~~~~~~~~lGa~~vi---~~~~~~~~~~v~~~  227 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSG----------YIPIATC-SP-HNFDLAKSRGAEEVF---DYRAPNLAQTIRTY  227 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTT----------CEEEEEE-CG-GGHHHHHHTTCSEEE---ETTSTTHHHHHHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCC----------CEEEEEe-CH-HHHHHHHHcCCcEEE---ECCCchHHHHHHHH
Confidence            78999999998 3 3777777777654          5888885 54 111     1232 33   33444455556655


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc-cCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS-KPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L-kpgG~~v~~  183 (229)
                      .++ .+|+|+-...     .            ...+..+.+.| ++||++++.
T Consensus       228 t~g-~~d~v~d~~g-----~------------~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          228 TKN-NLRYALDCIT-----N------------VESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             TTT-CCCEEEESSC-----S------------HHHHHHHHHHSCTTCEEEEES
T ss_pred             ccC-CccEEEECCC-----c------------hHHHHHHHHHhhcCCCEEEEE
Confidence            544 5999997332     1            13455677888 699998863

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=93.83  E-value=0.4  Score=38.71  Aligned_cols=78  Identities=15%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             CCCeeEeecC-CCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-------CCC-CCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGA-APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-------YPI-DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGc-GpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-------~~~-~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .++++|-.|+ |+|+++..+++.+..       ...+|+.+|.++.       ..+ ..+.++ .+|+++.+....+.+.
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~   77 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQE-------QGAQLVLTGFDRLRLIQRITDRLPAKAPLL-ELDVQNEEHLASLAGR   77 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHH-------TTCEEEEEECSCHHHHHHHHTTSSSCCCEE-ECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHH-------CCCEEEEEecChHHHHHHHHHhcCCCceEE-EccCCCHHHHHHHHHH
Confidence            3678998998 588899888887642       2358988888751       111 246778 8999997654433322


Q ss_pred             ----hC-CCCccEEEeCCCC
Q psy1489         132 ----LK-DDKLDVVLSDMAP  146 (229)
Q Consensus       132 ----~~-~~~~D~V~sd~~~  146 (229)
                          +. ...+|+++.++..
T Consensus        78 ~~~~~g~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           78 VTEAIGAGNKLDGVVHSIGF   97 (269)
T ss_dssp             HHHHHCTTCCEEEEEECCCC
T ss_pred             HHHHhCCCCCceEEEECCcc
Confidence                21 1279999998754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.61  E-value=0.043  Score=45.47  Aligned_cols=87  Identities=22%  Similarity=0.262  Sum_probs=53.5

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCeEEecCCCCC-hhHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAVVLSKCDFTQ-PDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~~~~~~D~~~-~~~~~~i~~  130 (229)
                      +++|++||-+|+ |+ |..+..+++..+          .+|+++|.++- ..     -++...  .|..+ .+    +.+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G----------a~Vi~~~~~~~-~~~~~~~~ga~~~--~~~~~~~~----~~~  185 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMG----------LRVLAAASRPE-KLALPLALGAEEA--ATYAEVPE----RAK  185 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT----------CEEEEEESSGG-GSHHHHHTTCSEE--EEGGGHHH----HHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC----------CEEEEEeCCHH-HHHHHHhcCCCEE--EECCcchh----HHH
Confidence            678999999997 44 556666666553          58999998761 11     122211  12222 22    222


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+  ..+|+|+. ...                  ..+..+.+.|+++|++++.
T Consensus       186 ~~--~~~d~vid-~g~------------------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          186 AW--GGLDLVLE-VRG------------------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             HT--TSEEEEEE-CSC------------------TTHHHHHTTEEEEEEEEEC
T ss_pred             Hh--cCceEEEE-CCH------------------HHHHHHHHhhccCCEEEEE
Confidence            23  57999998 531                  1235578899999998863

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.53  E-value=0.039  Score=47.05  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CCe-EEecCCCCCh-hHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GAV-VLSKCDFTQP-DIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~~-~~~~~D~~~~-~~~~~i~~  130 (229)
                      +++|++||-+|+|+ |.++..+++..+          .+|+++|.++- ..+     ++. ++   |..+. +..    +
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~G----------a~Vi~~~~~~~-~~~~~~~lGa~~v~---~~~~~~~~~----~  238 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMG----------AETYVISRSSR-KREDAMKMGADHYI---ATLEEGDWG----E  238 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSST-THHHHHHHTCSEEE---EGGGTSCHH----H
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEcCCHH-HHHHHHHcCCCEEE---cCcCchHHH----H
Confidence            57899999999966 666666776654          58999998762 111     222 22   11111 111    1


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+. +.+|+|+......  . .            ..+..+.+.|++||++++.
T Consensus       239 ~~~-~~~D~vid~~g~~--~-~------------~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          239 KYF-DTFDLIVVCASSL--T-D------------IDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             HSC-SCEEEEEECCSCS--T-T------------CCTTTGGGGEEEEEEEEEC
T ss_pred             Hhh-cCCCEEEECCCCC--c-H------------HHHHHHHHHhcCCCEEEEe
Confidence            122 4799999743210  0 0            1123477889999998763

>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U

Probab=93.41  E-value=0.081  Score=51.00  Aligned_cols=93  Identities=19%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee-cCCCC-hHHHHHHHHhhCCeeEEEc
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI-WDGRN-RPQLEESITRFYSQVKILK  208 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~-~~~~~-~~~~~~~l~~~F~~v~~~k  208 (229)
                      .++.+.|-+|.||.---.-|..+++.  .-....+.+..+.....+||.+++|+ |.... +..+......+|....++|
T Consensus       565 p~pTGtf~fVYSDvDQV~dgg~Dl~A--asr~~~~~l~~~l~~tt~GG~~VvKiNFPT~~~W~~lf~~~~~~~~s~~lvK  642 (1289)
T 1ej6_A          565 PFPSGDYQFVYSDVDQVVDGHDDLSI--SSGLVESLLSSCMHATAPGGSFVVKINFPTRPVWHYIEQKILPNITSYMLIK  642 (1289)
T ss_dssp             CCSCCCEEEEEECCCCCCSSSTTHHH--HHHHHHHHHHHHHHHEEEEEEEEEEESSCCHHHHHHHHHHTGGGEEEEEEEE
T ss_pred             cCCCcceEEEEechhhhhcCCCcchh--hHHHHHHHHHHHHHhhccCceEEEEEcCCChHHHHHHHHhhccccceeeeec
Confidence            37788999999987543334444433  23455678889999999999999998 33221 2334444455688999999


Q ss_pred             CCCCCCCCceEEEEeccCC
Q psy1489         209 PPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       209 p~~sr~~s~E~Y~v~~~~~  227 (229)
                      |-  -.+|.|.|+||-|+.
T Consensus       643 P~--IvNnvEvflv~~~r~  659 (1289)
T 1ej6_A          643 PF--VTNNVELFFVAFGVH  659 (1289)
T ss_dssp             EE--SSSSCCEEEEEEEES
T ss_pred             ce--eecceEEEEEEEeee
Confidence            84  468999999998764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.40  E-value=0.066  Score=46.73  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHH-HHhccCCCCCCCCcEEEEEeCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVK-LVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~-~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      ++++..|+|+||+.|.++..++. ..+        +.++|+++|.+|
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~--------~~~~V~afEP~p  262 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKG--------KFERVWMIEPDR  262 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTS--------CCSEEEEECCCH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcC--------CCCEEEEEcCCH
Confidence            36889999999999999999884 432        237999999986

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.26  E-value=0.11  Score=44.06  Aligned_cols=91  Identities=18%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CC-CeeEee-cCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCe-EEecCCCCChhHHHHHHHH
Q psy1489          61 PG-LKVLDC-GAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAV-VLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g-~~VLDl-GcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~-~~~~~D~~~~~~~~~i~~~  131 (229)
                      +| .+||=. |+|+ |..+..+++..|          .+|+++|.++- ..     -++. ++   |..+.+..+.+.+.
T Consensus       163 ~g~~~vli~gg~g~vG~~a~qla~~~G----------a~Vi~~~~~~~-~~~~~~~~Ga~~~~---~~~~~~~~~~v~~~  228 (349)
T 3pi7_A          163 EGEKAFVMTAGASQLCKLIIGLAKEEG----------FRPIVTVRRDE-QIALLKDIGAAHVL---NEKAPDFEATLREV  228 (349)
T ss_dssp             HCCSEEEESSTTSHHHHHHHHHHHHHT----------CEEEEEESCGG-GHHHHHHHTCSEEE---ETTSTTHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCC----------CEEEEEeCCHH-HHHHHHHcCCCEEE---ECCcHHHHHHHHHH
Confidence            45 556543 4444 555555666554          59999998761 11     1222 22   33344444555554


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+|+....          .        ..+..+.+.|+++|++++.
T Consensus       229 ~~~~g~D~vid~~g----------~--------~~~~~~~~~l~~~G~iv~~  262 (349)
T 3pi7_A          229 MKAEQPRIFLDAVT----------G--------PLASAIFNAMPKRARWIIY  262 (349)
T ss_dssp             HHHHCCCEEEESSC----------H--------HHHHHHHHHSCTTCEEEEC
T ss_pred             hcCCCCcEEEECCC----------C--------hhHHHHHhhhcCCCEEEEE
Confidence            44457999997432          1        1234577889999999874

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.23  E-value=2.1  Score=34.22  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             CCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+.+||-.|++.+ +++..+++.+..       ...+|+.++.++-.           .-..+.++ .+|+++.+....+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~   77 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE-------AGARLIFTYAGERLEKSVHELAGTLDRNDSIIL-PCDVTNDAEIETC   77 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-------TTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEE-ECCCSSSHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-------CCCEEEEecCchHHHHHHHHHHHhcCCCCceEE-eCCCCCHHHHHHH
Confidence            4678898888743 566666665542       23588888876410           11257888 9999997654433


Q ss_pred             HHHhCC--CCccEEEeCCCCCC-----CCCCcccHHHH---HH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKD--DKLDVVLSDMAPNA-----TGMREMDHDLI---TQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~--~~~D~V~sd~~~~~-----~g~~~~d~~~~---~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.+.+  +.+|+++.++....     ....+.+....   +.    -...+++.+...++++|++|.-
T Consensus        78 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           78 FASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            322211  36899999875421     11111221111   11    1123455667778888988753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.16  E-value=1.8  Score=35.77  Aligned_cols=74  Identities=18%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+++||-.| |+|.++..+++.+..       ...+|++++.++.      ..+.++.++ .+|+.+.+....+....  
T Consensus        19 ~~~~vlVTG-asG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~l~~v~~~-~~Dl~d~~~~~~~~~~~--   87 (330)
T 2pzm_A           19 SHMRILITG-GAGCLGSNLIEHWLP-------QGHEILVIDNFATGKREVLPPVAGLSVI-EGSVTDAGLLERAFDSF--   87 (330)
T ss_dssp             TCCEEEEET-TTSHHHHHHHHHHGG-------GTCEEEEEECCSSSCGGGSCSCTTEEEE-ECCTTCHHHHHHHHHHH--
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHH-------CCCEEEEEECCCccchhhhhccCCceEE-EeeCCCHHHHHHHHhhc--
Confidence            367898888 568888888877642       2258999998541      123567888 99999976544333222  


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                       .+|+|+..+..
T Consensus        88 -~~D~vih~A~~   98 (330)
T 2pzm_A           88 -KPTHVVHSAAA   98 (330)
T ss_dssp             -CCSEEEECCCC
T ss_pred             -CCCEEEECCcc
Confidence             68999987764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.13  E-value=0.065  Score=44.66  Aligned_cols=83  Identities=14%  Similarity=0.074  Sum_probs=52.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |.++..+++..|          .+|++++ ++ ...     -++..+ ..|   .       +.+
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~G----------a~Vi~~~-~~-~~~~~~~~lGa~~v-~~d---~-------~~v  196 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAG----------YVVDLVS-AS-LSQALAAKRGVRHL-YRE---P-------SQV  196 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEC-SS-CCHHHHHHHTEEEE-ESS---G-------GGC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC----------CEEEEEE-Ch-hhHHHHHHcCCCEE-EcC---H-------HHh
Confidence            57899999999976 777777777764          5999999 76 221     133333 212   1       112


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       +..+|+|+-..     |.             ..+..+.+.|+++|++++.
T Consensus       197 -~~g~Dvv~d~~-----g~-------------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          197 -TQKYFAIFDAV-----NS-------------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             -CSCEEEEECC-------------------------TTGGGEEEEEEEEEE
T ss_pred             -CCCccEEEECC-----Cc-------------hhHHHHHHHhcCCCEEEEE
Confidence             56899999632     11             1123477899999999864

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.08  E-value=0.95  Score=36.17  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             CCCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++++||-.|++ +|+++..+++.+..       ...+|+.++.+.-         .....+.++ .+|+++.+....+.
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~   83 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKR-------EGAELAFTYVGDRFKDRITEFAAEFGSELVF-PCDVADDAQIDALF   83 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH-------TTCEEEEEESSGGGHHHHHHHHHHTTCCCEE-ECCTTCHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHH-------cCCCEEEEecchhhHHHHHHHHHHcCCcEEE-ECCCCCHHHHHHHH
Confidence            357899999984 57888888876642       2358999987641         012347788 99999976544333


Q ss_pred             HHhC--CCCccEEEeCCCCCCC-----CCCc-ccH--HH-HHH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILK--DDKLDVVLSDMAPNAT-----GMRE-MDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~~~~-----g~~~-~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.+.  -+..|+++.++.....     ...+ .+.  +. .++    -....++.+...++++|.++..
T Consensus        84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  152 (271)
T 3ek2_A           84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL  152 (271)
T ss_dssp             HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence            2221  1478999998764221     1111 211  11 111    1123455566677778887753

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.07  E-value=0.084  Score=46.29  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=56.1

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEe--cCCCCCh-------
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLS--KCDFTQP-------  122 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~--~~D~~~~-------  122 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|++++.++-  ...  -++. ++.  ..|+.+.       
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~G----------a~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~  287 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGG----------GIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRR  287 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccc
Confidence            578999999998 54 666666666653          58888887641  000  1111 110  1122110       


Q ss_pred             ------hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         123 ------DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       123 ------~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                            ...+.+.+.. +..+|+|+...     |     .        ..+..+.+.|++||++++.
T Consensus       288 ~~~~~~~~~~~v~~~~-g~g~Dvvid~~-----G-----~--------~~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          288 VVETGRKLAKLVVEKA-GREPDIVFEHT-----G-----R--------VTFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHH-SSCCSEEEECS-----C-----H--------HHHHHHHHHSCTTCEEEES
T ss_pred             cchhhhHHHHHHHHHh-CCCceEEEECC-----C-----c--------hHHHHHHHHHhcCCEEEEE
Confidence                  0123444444 56799999843     2     1        2345677889999999874

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.71  E-value=1.1  Score=36.79  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++. .+++..+++.+..       ...+|+.+|.++-.         ....+.++ ++|+++.+....+.+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~  100 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCA-------QGAEVALTYLSETFKKRVDPLAESLGVKLTV-PCDVSDAESVDNMFK  100 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-------TTCEEEEEESSGGGHHHHHHHHHHHTCCEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHH-------CCCEEEEEeCChHHHHHHHHHHHhcCCeEEE-EcCCCCHHHHHHHHH
Confidence            467899889764 5777777776642       23589999887510         11346778 999999865544333


Q ss_pred             HhCC--CCccEEEeCCCCCC-----CCCCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKD--DKLDVVLSDMAPNA-----TGMREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~--~~~D~V~sd~~~~~-----~g~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.+  +..|+++.++....     ....+.+.  +. .++    -....++.+...++.+|++|.-
T Consensus       101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~i  167 (296)
T 3k31_A          101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTL  167 (296)
T ss_dssp             HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            2211  47999999875421     11111211  11 111    1123455566777788888753

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.67  E-value=0.07  Score=44.68  Aligned_cols=91  Identities=20%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             cCCCC-eeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCe-EEecCCCCChhHHHHHH
Q psy1489          59 LRPGL-KVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAV-VLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~-~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~-~~~~~D~~~~~~~~~i~  129 (229)
                      +++|+ +||-.|+ |+ |..+..+++..+          .+|++++.++- ..     -++. ++   |..+.+ ...+.
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G----------a~vi~~~~~~~-~~~~~~~lGa~~~i---~~~~~~-~~~~~  210 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRG----------YTVEASTGKAA-EHDYLRVLGAKEVL---AREDVM-AERIR  210 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCTT-CHHHHHHTTCSEEE---ECC---------
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCC----------CEEEEEECCHH-HHHHHHHcCCcEEE---ecCCcH-HHHHH
Confidence            45675 8999997 54 666677776654          58999998751 11     1222 22   222211 11122


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      . +.+..+|+|+...     |..             .+..+.+.|+++|++++.
T Consensus       211 ~-~~~~~~d~vid~~-----g~~-------------~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          211 P-LDKQRWAAAVDPV-----GGR-------------TLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             --CCSCCEEEEEECS-----TTT-------------THHHHHHTEEEEEEEEEC
T ss_pred             H-hcCCcccEEEECC-----cHH-------------HHHHHHHhhccCCEEEEE
Confidence            2 3345799999743     211             234578899999999864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.64  E-value=0.14  Score=43.52  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=55.4

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHH-hccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLV-NSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~-~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-+|+|+ |.++..+++.. +          .+|+++|.++-  .  .--++. ++   |..+. ..+.+.+.
T Consensus       184 ~~~g~~VlV~GaG~vG~~avqlak~~~G----------a~Vi~~~~~~~~~~~~~~lGa~~vi---~~~~~-~~~~v~~~  249 (359)
T 1h2b_A          184 LYPGAYVAIVGVGGLGHIAVQLLKVMTP----------ATVIALDVKEEKLKLAERLGADHVV---DARRD-PVKQVMEL  249 (359)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCC----------CEEEEEESSHHHHHHHHHTTCSEEE---ETTSC-HHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC----------CeEEEEeCCHHHHHHHHHhCCCEEE---eccch-HHHHHHHH
Confidence            57899999999975 55666666665 4          58999998751  1  011332 23   23333 33445444


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+..+|+|+-...     .    ..      ...+..+.+.  ++|++++.
T Consensus       250 ~~g~g~Dvvid~~G-----~----~~------~~~~~~~~~~--~~G~~v~~  284 (359)
T 1h2b_A          250 TRGRGVNVAMDFVG-----S----QA------TVDYTPYLLG--RMGRLIIV  284 (359)
T ss_dssp             TTTCCEEEEEESSC-----C----HH------HHHHGGGGEE--EEEEEEEC
T ss_pred             hCCCCCcEEEECCC-----C----ch------HHHHHHHhhc--CCCEEEEE
Confidence            44447999997332     1    10      0134445555  89998864

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=92.54  E-value=1.3  Score=33.67  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=45.5

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD  143 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd  143 (229)
                      +||-.|+ +|+++..+++.+.        ...+|++++.++-       .+ .+|+.+.+....+.+.+  +.+|+|+..
T Consensus         5 ~vlVtGa-sg~iG~~~~~~l~--------~g~~V~~~~r~~~-------~~-~~D~~~~~~~~~~~~~~--~~~d~vi~~   65 (202)
T 3d7l_A            5 KILLIGA-SGTLGSAVKERLE--------KKAEVITAGRHSG-------DV-TVDITNIDSIKKMYEQV--GKVDAIVSA   65 (202)
T ss_dssp             EEEEETT-TSHHHHHHHHHHT--------TTSEEEEEESSSS-------SE-ECCTTCHHHHHHHHHHH--CCEEEEEEC
T ss_pred             EEEEEcC-CcHHHHHHHHHHH--------CCCeEEEEecCcc-------ce-eeecCCHHHHHHHHHHh--CCCCEEEEC
Confidence            6888885 6888888888774        2358999987651       35 78999977555444333  468999987


Q ss_pred             CCC
Q psy1489         144 MAP  146 (229)
Q Consensus       144 ~~~  146 (229)
                      +..
T Consensus        66 ag~   68 (202)
T 3d7l_A           66 TGS   68 (202)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.40  E-value=0.095  Score=44.51  Aligned_cols=69  Identities=17%  Similarity=0.111  Sum_probs=46.9

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCC-cEEEEEeCCCCC------CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPK-GLVLSVDKLPIY------PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~-~~v~gvD~~~~~------~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      .+|+||.||.|+++..+.+. |        -. ..|.++|+++..      ..++..++ .+|+.+.... .+    +..
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G--------~~~~~v~a~e~d~~a~~ty~~N~~~~~~~-~~DI~~~~~~-~~----~~~   68 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-G--------LDGEIVAAVDINTVANSVYKHNFPETNLL-NRNIQQLTPQ-VI----KKW   68 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-T--------CSEEEEEEECCCHHHHHHHHHHCTTSCEE-CCCGGGCCHH-HH----HHT
T ss_pred             CEEEEECcCccHHHHHHHHc-C--------CCceEEEEEeCCHHHHHHHHHhCCCCcee-ccccccCCHH-Hh----ccC
Confidence            47999999999999887654 2        11 357899998721      23455566 7888775422 12    223


Q ss_pred             CccEEEeCCCC
Q psy1489         136 KLDVVLSDMAP  146 (229)
Q Consensus       136 ~~D~V~sd~~~  146 (229)
                      .+|+++...++
T Consensus        69 ~~D~l~ggpPC   79 (333)
T 4h0n_A           69 NVDTILMSPPC   79 (333)
T ss_dssp             TCCEEEECCCC
T ss_pred             CCCEEEecCCC
Confidence            69999987764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=92.33  E-value=1.3  Score=35.72  Aligned_cols=78  Identities=17%  Similarity=0.085  Sum_probs=51.9

Q ss_pred             CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++ +|+++..+++.+..       ...+|+.++.++-.         ....+.++ .+|+.+.+....+.+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~v~~~~~   76 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFN-------QGATLAFTYLNESLEKRVRPIAQELNSPYVY-ELDVSKEEHFKSLYN   76 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHT-------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEE-EcCCCCHHHHHHHHH
Confidence            36788988986 48888888887752       23589999887520         01236778 899999765443332


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+..|+++.++..
T Consensus        77 ~~~~~~g~id~lv~nAg~   94 (275)
T 2pd4_A           77 SVKKDLGSLDFIVHSVAF   94 (275)
T ss_dssp             HHHHHTSCEEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCcc
Confidence            211  1468999998754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=92.15  E-value=1.1  Score=35.85  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++. |+++..+++.+..       ...+|+.+|.++-     .    ......++ .+|+++.+....+.+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~v~~~~~   79 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHR-------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVL-QCDVAEDASIDTMFA   79 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHH-------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-------CCCEEEEEcCcHHHHHHHHHHHHhcCCcEEE-EccCCCHHHHHHHHH
Confidence            367888888863 8888888877642       2358999887651     0    01234677 899999765544333


Q ss_pred             HhCC--CCccEEEeCCCC
Q psy1489         131 ILKD--DKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~~--~~~D~V~sd~~~  146 (229)
                      ...+  +.+|+++.++..
T Consensus        80 ~~~~~~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           80 ELGKVWPKFDGFVHSIGF   97 (265)
T ss_dssp             HHHTTCSSEEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            2211  368999998754

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.06  E-value=0.59  Score=37.29  Aligned_cols=114  Identities=12%  Similarity=-0.039  Sum_probs=63.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.+||-.| |+|+++..+++.+...      ...+|+.++.++-  .        .-..+.++ .+|+.+.+....+.+
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~~~~~~~   74 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRL------FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH-QLDIDDLQSIRALRD   74 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHH------SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHh------cCCeEEEEeCChHHHHHHHHHHHhcCCeeEEE-ECCCCCHHHHHHHHH
Confidence            456788777 5678888888766410      1258888887641  0        01357788 999999764443322


Q ss_pred             HhC--CCCccEEEeCCCCCCCCCCcc---cHHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         131 ILK--DDKLDVVLSDMAPNATGMREM---DHDL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~~~~g~~~~---d~~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+.  -+.+|+|+.++..........   +.+. .+.    -...+++.+...++++|++|.
T Consensus        75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  136 (276)
T 1wma_A           75 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN  136 (276)
T ss_dssp             HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEE
Confidence            111  136999998875432221111   1111 111    112345556666777788765

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=92.00  E-value=1.7  Score=36.00  Aligned_cols=76  Identities=12%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.| |+|.++..+++.+...+     ...+|+++|.....          ..+++.++ .+|+.+.+....+..
T Consensus        23 ~~~~vlVtG-atG~iG~~l~~~L~~~g-----~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~d~~~~~~~~~   95 (346)
T 4egb_A           23 NAMNILVTG-GAGFIGSNFVHYMLQSY-----ETYKIINFDALTYSGNLNNVKSIQDHPNYYFV-KGEIQNGELLEHVIK   95 (346)
T ss_dssp             -CEEEEEET-TTSHHHHHHHHHHHHHC-----TTEEEEEEECCCTTCCGGGGTTTTTCTTEEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCeEEEEC-CccHHHHHHHHHHHhhC-----CCcEEEEEeccccccchhhhhhhccCCCeEEE-EcCCCCHHHHHHHHh
Confidence            467899888 56888888777653110     23589999876411          11478888 999999765544332


Q ss_pred             HhCCCCccEEEeCCCC
Q psy1489         131 ILKDDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~  146 (229)
                         +..+|+|+..+..
T Consensus        96 ---~~~~d~Vih~A~~  108 (346)
T 4egb_A           96 ---ERDVQVIVNFAAE  108 (346)
T ss_dssp             ---HHTCCEEEECCCC
T ss_pred             ---hcCCCEEEECCcc
Confidence               3358999987654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.98  E-value=1.5  Score=36.35  Aligned_cols=70  Identities=16%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEE
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV  140 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V  140 (229)
                      ++++||-.| |+|.++..+++.+..       ...+|++++.++-.  .++.++ .+|+.+......+   +.  .+|+|
T Consensus        18 ~~~~vlVtG-atG~iG~~l~~~L~~-------~G~~V~~~~r~~~~--~~~~~~-~~Dl~d~~~~~~~---~~--~~d~v   81 (347)
T 4id9_A           18 GSHMILVTG-SAGRVGRAVVAALRT-------QGRTVRGFDLRPSG--TGGEEV-VGSLEDGQALSDA---IM--GVSAV   81 (347)
T ss_dssp             ---CEEEET-TTSHHHHHHHHHHHH-------TTCCEEEEESSCCS--SCCSEE-ESCTTCHHHHHHH---HT--TCSEE
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHh-------CCCEEEEEeCCCCC--CCccEE-ecCcCCHHHHHHH---Hh--CCCEE
Confidence            467899888 578888888877642       23589999987622  678888 9999997654433   32  68999


Q ss_pred             EeCCCC
Q psy1489         141 LSDMAP  146 (229)
Q Consensus       141 ~sd~~~  146 (229)
                      +..++.
T Consensus        82 ih~A~~   87 (347)
T 4id9_A           82 LHLGAF   87 (347)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            987654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=91.93  E-value=1.8  Score=35.71  Aligned_cols=74  Identities=12%  Similarity=0.023  Sum_probs=50.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----------CCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+++||-.| |+|+++..+++.+..       ...+|+++|.++-..           -.++.++ .+|+.+.+....+.
T Consensus         4 ~~~~vlVTG-atG~iG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~   74 (341)
T 3enk_A            4 TKGTILVTG-GAGYIGSHTAVELLA-------HGYDVVIADNLVNSKREAIARIEKITGKTPAFH-ETDVSDERALARIF   74 (341)
T ss_dssp             SSCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEE-CCCTTCHHHHHHHH
T ss_pred             CCcEEEEec-CCcHHHHHHHHHHHH-------CCCcEEEEecCCcchHHHHHHHHhhcCCCceEE-EeecCCHHHHHHHH
Confidence            356788777 678888888877642       235899998865211           1367888 99999976554433


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                      +   ...+|+|+..+..
T Consensus        75 ~---~~~~d~vih~A~~   88 (341)
T 3enk_A           75 D---AHPITAAIHFAAL   88 (341)
T ss_dssp             H---HSCCCEEEECCCC
T ss_pred             h---ccCCcEEEECccc
Confidence            2   3479999987753

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.90  E-value=1.1  Score=36.86  Aligned_cols=75  Identities=15%  Similarity=-0.048  Sum_probs=49.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++++||-.| |+|.++..+++.+..       ...+|++++.++-.          ...++.++ .+|+.+.+....+.
T Consensus        12 ~~~~~vlVTG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~   82 (335)
T 1rpn_A           12 SMTRSALVTG-ITGQDGAYLAKLLLE-------KGYRVHGLVARRSSDTRWRLRELGIEGDIQYE-DGDMADACSVQRAV   82 (335)
T ss_dssp             ---CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCCSSCCCHHHHHTTCGGGEEEE-ECCTTCHHHHHHHH
T ss_pred             ccCCeEEEEC-CCChHHHHHHHHHHH-------CCCeEEEEeCCCccccccchhhccccCceEEE-ECCCCCHHHHHHHH
Confidence            4688999887 578888888876642       23589999987521          11357788 89999976544332


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                      .   +..+|+|+..+..
T Consensus        83 ~---~~~~d~Vih~A~~   96 (335)
T 1rpn_A           83 I---KAQPQEVYNLAAQ   96 (335)
T ss_dssp             H---HHCCSEEEECCSC
T ss_pred             H---HcCCCEEEECccc
Confidence            2   2258999987653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=91.82  E-value=1.5  Score=33.85  Aligned_cols=69  Identities=12%  Similarity=0.216  Sum_probs=49.4

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCCCCCeEEecCCCCC-hhHHHHHHHHhCCCCccEE
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPIDGAVVLSKCDFTQ-PDIQDRLVTILKDDKLDVV  140 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~~~~~~~~~~D~~~-~~~~~~i~~~~~~~~~D~V  140 (229)
                      +||-.| |+|.++..+++.+..       ...+|++++.++  .....++.++ .+|+.+ .+.   +...+.  .+|+|
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~-------~g~~V~~~~R~~~~~~~~~~~~~~-~~D~~d~~~~---~~~~~~--~~d~v   67 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLST-------TDYQIYAGARKVEQVPQYNNVKAV-HFDVDWTPEE---MAKQLH--GMDAI   67 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTT-------SSCEEEEEESSGGGSCCCTTEEEE-ECCTTSCHHH---HHTTTT--TCSEE
T ss_pred             eEEEEC-CCCHHHHHHHHHHHH-------CCCEEEEEECCccchhhcCCceEE-EecccCCHHH---HHHHHc--CCCEE
Confidence            577677 568899999988752       235899999886  2334678899 999998 653   333343  59999


Q ss_pred             EeCCCC
Q psy1489         141 LSDMAP  146 (229)
Q Consensus       141 ~sd~~~  146 (229)
                      +..+..
T Consensus        68 i~~ag~   73 (219)
T 3dqp_A           68 INVSGS   73 (219)
T ss_dssp             EECCCC
T ss_pred             EECCcC
Confidence            987764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.79  E-value=1.3  Score=36.31  Aligned_cols=115  Identities=17%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             CCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++.| +++..+++.+..       ...+|+.++.++-         .....+.++ .+|+++.+....+.+
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAARE-------AGAELAFTYQGDALKKRVEPLAEELGAFVAG-HCDVADAASIDAVFE  101 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHH-------TTCEEEEEECSHHHHHHHHHHHHHHTCEEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-------CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-ECCCCCHHHHHHHHH
Confidence            4678999998754 577777766542       2358888887741         012356778 999999865544333


Q ss_pred             HhC--CCCccEEEeCCCCCC-----CCCCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILK--DDKLDVVLSDMAPNA-----TGMREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~~~-----~g~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.  -+..|+++.++....     ....+.+.  +. .+.    -....++.+...++.+|++|.-
T Consensus       102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~i  168 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTL  168 (293)
T ss_dssp             HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            221  147999999875421     11111111  11 111    1123455666777788888753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.70  E-value=0.61  Score=33.77  Aligned_cols=96  Identities=7%  Similarity=-0.010  Sum_probs=58.3

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      .+|+=+||  |.++..+++.+..       ....|+++|.++-  .  .-.++.++ .+|.++++....    ..-..+|
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~-------~g~~v~vid~~~~~~~~~~~~g~~~i-~gd~~~~~~l~~----a~i~~ad   73 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLA-------SDIPLVVIETSRTRVDELRERGVRAV-LGNAANEEIMQL----AHLECAK   73 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHTTCEEE-ESCTTSHHHHHH----TTGGGCS
T ss_pred             CCEEEECc--CHHHHHHHHHHHH-------CCCCEEEEECCHHHHHHHHHcCCCEE-ECCCCCHHHHHh----cCcccCC
Confidence            56887887  5566666665531       2358999999871  1  12467788 899999765432    2234689


Q ss_pred             EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      +|+.....         .....     .+....+.+.|+..++.....
T Consensus        74 ~vi~~~~~---------~~~n~-----~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           74 WLILTIPN---------GYEAG-----EIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             EEEECCSC---------HHHHH-----HHHHHHHHHCSSSEEEEEESS
T ss_pred             EEEEECCC---------hHHHH-----HHHHHHHHHCCCCeEEEEECC
Confidence            99974421         21111     122345567788888776643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.63  E-value=1.6  Score=33.97  Aligned_cols=74  Identities=16%  Similarity=0.102  Sum_probs=49.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC-CCCccEE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK-DDKLDVV  140 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V  140 (229)
                      +++||-.|+ +|+++..+++.+..       ...+|+.+|.++-  ...+.++ .+|+.+.+....+.+.+. ...+|++
T Consensus         2 ~k~vlVtGa-sggiG~~la~~l~~-------~G~~V~~~~r~~~--~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~d~l   70 (242)
T 1uay_A            2 ERSALVTGG-ASGLGRAAALALKA-------RGYRVVVLDLRRE--GEDLIYV-EGDVTREEDVRRAVARAQEEAPLFAV   70 (242)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHH-------HTCEEEEEESSCC--SSSSEEE-ECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCEEEEeCC-CChHHHHHHHHHHH-------CCCEEEEEccCcc--ccceEEE-eCCCCCHHHHHHHHHHHHhhCCceEE
Confidence            457887785 57777777766532       1258999998763  5567888 999999765444332221 1368999


Q ss_pred             EeCCCC
Q psy1489         141 LSDMAP  146 (229)
Q Consensus       141 ~sd~~~  146 (229)
                      +.++..
T Consensus        71 i~~ag~   76 (242)
T 1uay_A           71 VSAAGV   76 (242)
T ss_dssp             EECCCC
T ss_pred             EEcccc
Confidence            987653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.62  E-value=0.024  Score=48.33  Aligned_cols=90  Identities=17%  Similarity=0.151  Sum_probs=54.0

Q ss_pred             cC-CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----C-CCCC-eEEecCCCCChhHHHHHHH
Q psy1489          59 LR-PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----P-IDGA-VVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~-~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~-~~~~-~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++ +|++||-+|+|+ |.++..+++..+          .+|+++|.++-.    . --++ .++   |..+.   +.+.+
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~G----------a~Vi~~~~~~~~~~~~~~~lGa~~vi---~~~~~---~~~~~  240 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAMG----------HHVTVISSSNKKREEALQDLGADDYV---IGSDQ---AKMSE  240 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSTTHHHHHHTTSCCSCEE---ETTCH---HHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC----------CeEEEEeCChHHHHHHHHHcCCceee---ccccH---HHHHH
Confidence            45 899999999876 556666676654          589999988621    0 1122 222   22232   22333


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..  +.+|+|+-...     ..            ..+..+.+.|+++|++++.
T Consensus       241 ~~--~g~D~vid~~g-----~~------------~~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          241 LA--DSLDYVIDTVP-----VH------------HALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             ST--TTEEEEEECCC-----SC------------CCSHHHHTTEEEEEEEEEC
T ss_pred             hc--CCCCEEEECCC-----Ch------------HHHHHHHHHhccCCEEEEe
Confidence            22  36999997332     11            1134477899999999864

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=91.62  E-value=2.5  Score=34.21  Aligned_cols=78  Identities=21%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++. |+++..+++.+..       ...+|+.++.++-     .    ...++.++ .+|+++.+....+.+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~~~   91 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHR-------EGAQLAFTYATPKLEKRVREIAKGFGSDLVV-KCDVSLDEDIKNLKK   91 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHH-------TTCEEEEEESSGGGHHHHHHHHHHTTCCCEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEE-EcCCCCHHHHHHHHH
Confidence            467899889874 8888888876642       2358988887651     0    01246778 899999765443332


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+.+|+++.++..
T Consensus        92 ~~~~~~g~iD~lv~~Ag~  109 (285)
T 2p91_A           92 FLEENWGSLDIIVHSIAY  109 (285)
T ss_dssp             HHHHHTSCCCEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            211  1468999998754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=91.56  E-value=4.3  Score=32.15  Aligned_cols=110  Identities=14%  Similarity=0.125  Sum_probs=62.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCccE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLDV  139 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D~  139 (229)
                      +++||-.|++ |+++..+++.+..       ...+|+.+|.++. .... ..+ ..|+.+.+....+.+.+.  -+.+|+
T Consensus        22 ~k~vlITGas-~gIG~~la~~l~~-------~G~~V~~~~r~~~-~~~~-~~~-~~d~~d~~~v~~~~~~~~~~~g~iD~   90 (251)
T 3orf_A           22 SKNILVLGGS-GALGAEVVKFFKS-------KSWNTISIDFREN-PNAD-HSF-TIKDSGEEEIKSVIEKINSKSIKVDT   90 (251)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESSCC-TTSS-EEE-ECSCSSHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEeCCcc-cccc-cce-EEEeCCHHHHHHHHHHHHHHcCCCCE
Confidence            5678877766 5677777766542       2358999998872 2222 344 678888765544433221  247899


Q ss_pred             EEeCCCCCCCC--CCcc--cHHH-HH----HHHHHHHHHHHHcccCCCEEEE
Q psy1489         140 VLSDMAPNATG--MREM--DHDL-IT----QLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       140 V~sd~~~~~~g--~~~~--d~~~-~~----~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ++.++.....+  ....  +.+. .+    .-...+++.+...++++|++|.
T Consensus        91 li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  142 (251)
T 3orf_A           91 FVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVL  142 (251)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEE
Confidence            99987642211  1111  1111 11    1112345556667777888775

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=91.50  E-value=0.29  Score=41.50  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             cCCC-CeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----C-C--CCCe-EEecCCCCChhHHH
Q psy1489          59 LRPG-LKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----P-I--DGAV-VLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g-~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~-~--~~~~-~~~~~D~~~~~~~~  126 (229)
                      +++| ++||-.|+ |+ |.++..+++..|          .+|+++..++-.     . +  -++. ++...+....+..+
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~G----------a~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~  233 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLN----------FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGP  233 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHT----------CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCC----------CEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHH
Confidence            5688 99999997 65 777777787764          577777654311     0 0  1222 22011000022333


Q ss_pred             HHHHHh--CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         127 RLVTIL--KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       127 ~i~~~~--~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.+..  .+..+|+|+-..     |     .       ... ..+.+.|+++|++++.
T Consensus       234 ~i~~~t~~~~~g~Dvvid~~-----G-----~-------~~~-~~~~~~l~~~G~~v~~  274 (364)
T 1gu7_A          234 TIKEWIKQSGGEAKLALNCV-----G-----G-------KSS-TGIARKLNNNGLMLTY  274 (364)
T ss_dssp             HHHHHHHHHTCCEEEEEESS-----C-----H-------HHH-HHHHHTSCTTCEEEEC
T ss_pred             HHHHHhhccCCCceEEEECC-----C-----c-------hhH-HHHHHHhccCCEEEEe
Confidence            444433  345799999733     1     1       011 2567899999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=91.41  E-value=0.89  Score=37.81  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=49.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC---------------CCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI---------------DGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~---------------~~~~~~~~~D~~~~~~~  125 (229)
                      .+++||-.| |+|.++..+++.+..       ...+|++++.++....               .++.++ .+|+.+.+..
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~   94 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLK-------LNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFI-EGDIRDLTTC   94 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEE-ECCTTCHHHH
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHH-------CCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEE-EccCCCHHHH
Confidence            367899887 578888888876642       2358999998652110               578889 9999997643


Q ss_pred             HHHHHHhCCCCccEEEeCCC
Q psy1489         126 DRLVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~  145 (229)
                      .   ..+.  .+|+|+..+.
T Consensus        95 ~---~~~~--~~d~Vih~A~  109 (351)
T 3ruf_A           95 E---QVMK--GVDHVLHQAA  109 (351)
T ss_dssp             H---HHTT--TCSEEEECCC
T ss_pred             H---HHhc--CCCEEEECCc
Confidence            3   3343  6999998664

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=91.40  E-value=2.4  Score=33.94  Aligned_cols=70  Identities=14%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL  141 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~  141 (229)
                      ++||-.|+ +|+++..+++.+..       ...+|+++|.++.. ...++.++ .+|+.+.+....+   +.  .+|+|+
T Consensus         4 k~vlVTGa-sg~IG~~la~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~-~~Dl~d~~~~~~~---~~--~~D~vi   69 (267)
T 3rft_A            4 KRLLVTGA-AGQLGRVMRERLAP-------MAEILRLADLSPLDPAGPNEECV-QCDLADANAVNAM---VA--GCDGIV   69 (267)
T ss_dssp             EEEEEEST-TSHHHHHHHHHTGG-------GEEEEEEEESSCCCCCCTTEEEE-ECCTTCHHHHHHH---HT--TCSEEE
T ss_pred             CEEEEECC-CCHHHHHHHHHHHh-------cCCEEEEEecCCccccCCCCEEE-EcCCCCHHHHHHH---Hc--CCCEEE
Confidence            46776664 68888888887742       12479999988732 23467888 9999997654433   32  689999


Q ss_pred             eCCCC
Q psy1489         142 SDMAP  146 (229)
Q Consensus       142 sd~~~  146 (229)
                      .++..
T Consensus        70 ~~Ag~   74 (267)
T 3rft_A           70 HLGGI   74 (267)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            98764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=91.40  E-value=3.6  Score=33.88  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .+++||-.| |+|.++..+++.+..       ...+|++++.++-.      .+.++.++ .+|+.+.+....+.   .+
T Consensus        20 ~~~~vlVTG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~l~~~~~~~~~-~~Dl~d~~~~~~~~---~~   87 (333)
T 2q1w_A           20 HMKKVFITG-ICGQIGSHIAELLLE-------RGDKVVGIDNFATGRREHLKDHPNLTFV-EGSIADHALVNQLI---GD   87 (333)
T ss_dssp             -CCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCSSCCGGGSCCCTTEEEE-ECCTTCHHHHHHHH---HH
T ss_pred             CCCEEEEeC-CccHHHHHHHHHHHH-------CCCEEEEEECCCccchhhHhhcCCceEE-EEeCCCHHHHHHHH---hc
Confidence            357888887 578888888876642       23589999886411      12467888 99999976544332   22


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      ..+|+|+..+..
T Consensus        88 ~~~D~vih~A~~   99 (333)
T 2q1w_A           88 LQPDAVVHTAAS   99 (333)
T ss_dssp             HCCSEEEECCCC
T ss_pred             cCCcEEEECcee
Confidence            358999987764

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=91.33  E-value=3.8  Score=32.37  Aligned_cols=77  Identities=13%  Similarity=0.045  Sum_probs=49.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      .++++|-.|+ +|+++..+++.+..       ...+|+.++.++.....++.++ ..|+.+.+....+.+...  -+.+|
T Consensus         6 ~~k~vlVTGa-s~giG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~g~id   76 (250)
T 2fwm_X            6 SGKNVWVTGA-GKGIGYATALAFVE-------AGAKVTGFDQAFTQEQYPFATE-VMDVADAAQVAQVCQRLLAETERLD   76 (250)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHH-------TTCEEEEEESCCCSSCCSSEEE-ECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEeCchhhhcCCceEE-EcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            3677888885 46777777766542       2358999988762111237778 899999765443322111  24699


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        77 ~lv~~Ag~   84 (250)
T 2fwm_X           77 ALVNAAGI   84 (250)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99998754

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=91.31  E-value=2.6  Score=32.65  Aligned_cols=102  Identities=10%  Similarity=0.110  Sum_probs=60.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEE
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV  140 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V  140 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.++.++           ..|+++.+....+.+.+  +..|++
T Consensus         5 ~~k~vlVTGas-~gIG~~~a~~l~~-------~G~~V~~~~r~~-----------~~D~~~~~~v~~~~~~~--g~id~l   63 (223)
T 3uce_A            5 DKTVYVVLGGT-SGIGAELAKQLES-------EHTIVHVASRQT-----------GLDISDEKSVYHYFETI--GAFDHL   63 (223)
T ss_dssp             CCEEEEEETTT-SHHHHHHHHHHCS-------TTEEEEEESGGG-----------TCCTTCHHHHHHHHHHH--CSEEEE
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEecCCc-----------ccCCCCHHHHHHHHHHh--CCCCEE
Confidence            35677777755 6778888887742       234788888765           46888876555554444  579999


Q ss_pred             EeCCCCC-C-CCCCcccHHHH---HH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         141 LSDMAPN-A-TGMREMDHDLI---TQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       141 ~sd~~~~-~-~g~~~~d~~~~---~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.++... . ....+.+....   ++    -....++.+...++++|+++..
T Consensus        64 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~  115 (223)
T 3uce_A           64 IVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLT  115 (223)
T ss_dssp             EECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEe
Confidence            9987642 1 11222221111   11    1123455666777888887753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.28  E-value=1.6  Score=31.19  Aligned_cols=69  Identities=19%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ..+|+-+||  |.++..+++.+..       ....|+++|.++-  .  ...++.++ .+|.++++....    ..-..+
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~-------~g~~V~~id~~~~~~~~~~~~~~~~~-~gd~~~~~~l~~----~~~~~~   71 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTA-------AGKKVLAVDKSKEKIELLEDEGFDAV-IADPTDESFYRS----LDLEGV   71 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHTTCEEE-ECCTTCHHHHHH----SCCTTC
T ss_pred             CCEEEEECC--CHHHHHHHHHHHH-------CCCeEEEEECCHHHHHHHHHCCCcEE-ECCCCCHHHHHh----CCcccC
Confidence            457888888  5577777776642       2358999999861  1  12467778 899999765432    233578


Q ss_pred             cEEEeCC
Q psy1489         138 DVVLSDM  144 (229)
Q Consensus       138 D~V~sd~  144 (229)
                      |+|+...
T Consensus        72 d~vi~~~   78 (141)
T 3llv_A           72 SAVLITG   78 (141)
T ss_dssp             SEEEECC
T ss_pred             CEEEEec
Confidence            9998843

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.18  E-value=4.1  Score=33.16  Aligned_cols=113  Identities=13%  Similarity=0.056  Sum_probs=64.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .|++||-.|++ |+++..+++.+..       ...+|+.+|.++..           .-..+.++ .+|+.+.+....+.
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~  116 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAK-------EGANIAIAYLDEEGDANETKQYVEKEGVKCVLL-PGDLSDEQHCKDIV  116 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEE-ESCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH-------CCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEE-ECCCCCHHHHHHHH
Confidence            46788888865 6677777766542       23588888887510           11356778 89999976544332


Q ss_pred             HHhC--CCCccEEEeCCCCCCC--CCCccc--HHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILK--DDKLDVVLSDMAPNAT--GMREMD--HDL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~~~~--g~~~~d--~~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.+.  -+..|+++.++.....  ...+.+  .+. .++    -...+++.+...++++|.+|.
T Consensus       117 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~  180 (291)
T 3ijr_A          117 QETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN  180 (291)
T ss_dssp             HHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence            2111  1468999998653211  111111  111 111    112455667777888898775

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.07  E-value=0.3  Score=40.68  Aligned_cols=73  Identities=12%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +...+|+||.||.|+++..+.+. |        -... |.++|+++.      ...++..++ .+|+.+.... .+.+  
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G--------~~~~~v~a~E~d~~a~~ty~~N~~~~~~~-~~DI~~i~~~-~i~~--   80 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-G--------IQVDRYIASEVCEDSITVGMVRHQGKIMY-VGDVRSVTQK-HIQE--   80 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-T--------BCEEEEEEECCCHHHHHHHHHHTTTCEEE-ECCGGGCCHH-HHHH--
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-C--------CccceEEEEECCHHHHHHHHHhCCCCcee-CCChHHccHH-Hhcc--
Confidence            34679999999999999886653 3        1122 689999862      123455667 8998875432 2322  


Q ss_pred             CCCCccEEEeCCCC
Q psy1489         133 KDDKLDVVLSDMAP  146 (229)
Q Consensus       133 ~~~~~D~V~sd~~~  146 (229)
                       ...+|+++...++
T Consensus        81 -~~~~Dll~ggpPC   93 (295)
T 2qrv_A           81 -WGPFDLVIGGSPC   93 (295)
T ss_dssp             -TCCCSEEEECCCC
T ss_pred             -cCCcCEEEecCCC
Confidence             1469999998764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=91.00  E-value=0.22  Score=42.51  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-.| +|+ |..+..+++..+          .+|++++ ++ ...     -++..+  .|..+.+..+.+.+ 
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G----------a~Vi~~~-~~-~~~~~~~~lGa~~v--~~~~~~~~~~~~~~-  245 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWD----------AHVTAVC-SQ-DASELVRKLGADDV--IDYKSGSVEEQLKS-  245 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTT----------CEEEEEE-CG-GGHHHHHHTTCSEE--EETTSSCHHHHHHT-
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCC----------CEEEEEe-Ch-HHHHHHHHcCCCEE--EECCchHHHHHHhh-
Confidence            56899999999 565 666666676653          5899988 44 111     123221  12333333333332 


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                        ...+|+|+....     ..   .        ..+..+.+.|++||++++.
T Consensus       246 --~~g~D~vid~~g-----~~---~--------~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          246 --LKPFDFILDNVG-----GS---T--------ETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             --SCCBSEEEESSC-----TT---H--------HHHGGGGBCSSSCCEEEES
T ss_pred             --cCCCCEEEECCC-----Ch---h--------hhhHHHHHhhcCCcEEEEe
Confidence              257999997432     11   0        1345577889999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.95  E-value=3.5  Score=30.06  Aligned_cols=71  Identities=17%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC---CCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP---IDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .++.+|+-+|+  |.++..+++.+..       ....|+++|.++  ...   ..++.++ .+|..+.+..   .. ..-
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~-------~g~~V~vid~~~~~~~~~~~~~g~~~~-~~d~~~~~~l---~~-~~~   82 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASS-------SGHSVVVVDKNEYAFHRLNSEFSGFTV-VGDAAEFETL---KE-CGM   82 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHH-------TTCEEEEEESCGGGGGGSCTTCCSEEE-ESCTTSHHHH---HT-TTG
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHh-------CCCeEEEEECCHHHHHHHHhcCCCcEE-EecCCCHHHH---HH-cCc
Confidence            46789999987  5566665555431       124899999886  212   2356666 7887775432   21 112


Q ss_pred             CCccEEEeCC
Q psy1489         135 DKLDVVLSDM  144 (229)
Q Consensus       135 ~~~D~V~sd~  144 (229)
                      ..+|+|+...
T Consensus        83 ~~ad~Vi~~~   92 (155)
T 2g1u_A           83 EKADMVFAFT   92 (155)
T ss_dssp             GGCSEEEECS
T ss_pred             ccCCEEEEEe
Confidence            3689999843

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=90.87  E-value=2.9  Score=33.62  Aligned_cols=77  Identities=13%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|+.+|.++......+..+ +.|+++.+....+.+.+.  -+..|
T Consensus        13 ~~k~vlVTGas-~GIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           13 TDKVAIVTGGS-SGIGLAVVDALVR-------YGAKVVSVSLDEKSDVNVSDHF-KIDVTNEEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHH-------TTCEEEEEESCC--CTTSSEEE-ECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEeCCchhccCceeEE-EecCCCHHHHHHHHHHHHHHcCCCC
Confidence            57888888865 5666666766542       2358999998873333456778 899999765443332211  14799


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=90.80  E-value=3.9  Score=32.66  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-CCCCCeEEecCCCCChhHHHHHHHHhC--CCCc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-PIDGAVVLSKCDFTQPDIQDRLVTILK--DDKL  137 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~  137 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.+|.++.. ....+.++ .+|+++.+....+.+...  -+.+
T Consensus        27 ~~k~vlVTGa-s~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~~~~~~~g~i   97 (260)
T 3un1_A           27 QQKVVVITGA-SQGIGAGLVRAYRD-------RNYRVVATSRSIKPSADPDIHTV-AGDISKPETADRIVREGIERFGRI   97 (260)
T ss_dssp             TCCEEEESSC-SSHHHHHHHHHHHH-------TTCEEEEEESSCCCCSSTTEEEE-ESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHH-------CCCEEEEEeCChhhcccCceEEE-EccCCCHHHHHHHHHHHHHHCCCC
Confidence            4677887775 46677777766642       23589999987621 22357788 999999865443332111  1369


Q ss_pred             cEEEeCCCC
Q psy1489         138 DVVLSDMAP  146 (229)
Q Consensus       138 D~V~sd~~~  146 (229)
                      |+++.++..
T Consensus        98 D~lv~nAg~  106 (260)
T 3un1_A           98 DSLVNNAGV  106 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998754

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=90.71  E-value=1.4  Score=35.22  Aligned_cols=78  Identities=22%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++ +|+++..+++.+..       ...+|+.++.++-     .    ....+.++ .+|+++.+....+.+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~v~~~~~   78 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKE-------AGAEVALSYQAERLRPEAEKLAEALGGALLF-RADVTQDEELDALFA   78 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHH-------HTCEEEEEESCGGGHHHHHHHHHHTTCCEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-------CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEE-ECCCCCHHHHHHHHH
Confidence            36789999986 48888888776642       1258988887651     0    01246778 899999764443322


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      ...  -+.+|+++.++..
T Consensus        79 ~~~~~~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           79 GVKEAFGGLDYLVHAIAF   96 (261)
T ss_dssp             HHHHHHSSEEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            111  1368999998754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=90.63  E-value=5.5  Score=31.80  Aligned_cols=76  Identities=13%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|+.++.++- .-.++.++ .+|+.+.+....+.+.+.  -+.+|
T Consensus         7 ~~k~vlVTGas-~gIG~~ia~~l~~-------~G~~V~~~~r~~~-~~~~~~~~-~~Dl~~~~~v~~~~~~~~~~~g~iD   76 (264)
T 2dtx_A            7 RDKVVIVTGAS-MGIGRAIAERFVD-------EGSKVIDLSIHDP-GEAKYDHI-ECDVTNPDQVKASIDHIFKEYGSIS   76 (264)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHH-------TTCEEEEEESSCC-CSCSSEEE-ECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEecCcc-cCCceEEE-EecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35678877754 6677777766542       2358999988762 23457788 899999764443322111  13689


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        77 ~lv~~Ag~   84 (264)
T 2dtx_A           77 VLVNNAGI   84 (264)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=90.60  E-value=4.7  Score=33.02  Aligned_cols=73  Identities=18%  Similarity=0.068  Sum_probs=48.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----------CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----------IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----------~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++||-.| |+|.++..+++.+..       ...+|++++.++-..          ..++.++ .+|+.+.+....+.+ 
T Consensus         3 ~~~vlVtG-atG~iG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~-   72 (345)
T 2z1m_A            3 GKRALITG-IRGQDGAYLAKLLLE-------KGYEVYGADRRSGEFASWRLKELGIENDVKII-HMDLLEFSNIIRTIE-   72 (345)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEECSCCSTTTTHHHHHTTCTTTEEEC-CCCTTCHHHHHHHHH-
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHH-------CCCEEEEEECCCcccccccHhhccccCceeEE-ECCCCCHHHHHHHHH-
Confidence            56788777 468888888876642       235899999875211          1257788 899999765443332 


Q ss_pred             hCCCCccEEEeCCCC
Q psy1489         132 LKDDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~  146 (229)
                        +..+|+|+..+..
T Consensus        73 --~~~~d~vih~A~~   85 (345)
T 2z1m_A           73 --KVQPDEVYNLAAQ   85 (345)
T ss_dssp             --HHCCSEEEECCCC
T ss_pred             --hcCCCEEEECCCC
Confidence              2258999987754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.43  E-value=2.1  Score=34.47  Aligned_cols=114  Identities=15%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .|+++|-.|++ |+++..+++++..       ...+|+.++.....           .-..+.++ +.|+++.+....+.
T Consensus        17 ~~k~~lVTGas-~gIG~aia~~l~~-------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~   87 (270)
T 3is3_A           17 DGKVALVTGSG-RGIGAAVAVHLGR-------LGAKVVVNYANSTKDAEKVVSEIKALGSDAIAI-KADIRQVPEIVKLF   87 (270)
T ss_dssp             TTCEEEESCTT-SHHHHHHHHHHHH-------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEE-ECCTTSHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEE-EcCCCCHHHHHHHH
Confidence            46788888865 5667777766542       23578887765311           11356778 99999976444332


Q ss_pred             HHhC--CCCccEEEeCCCCCCCC-CCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILK--DDKLDVVLSDMAPNATG-MREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~~~~g-~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +...  -+..|+++.++.....+ ..+.+.  +. .++    -....++.+...++++|++|.-
T Consensus        88 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  151 (270)
T 3is3_A           88 DQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT  151 (270)
T ss_dssp             HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            2111  13689999987643211 111121  11 111    1123456677778889988763

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=90.34  E-value=0.12  Score=44.15  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=53.1

Q ss_pred             CCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---CCC--C--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          62 GLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---IYP--I--DGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        62 g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---~~~--~--~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      |++||-+|+|+ |..+..+++..|          .+|+++|.++   -..  .  -++..+   | .+ +..+.+.+ ..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~G----------a~Vi~~~~~~~~~~~~~~~~~~ga~~v---~-~~-~~~~~~~~-~~  244 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYG----------LEVWMANRREPTEVEQTVIEETKTNYY---N-SS-NGYDKLKD-SV  244 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHT----------CEEEEEESSCCCHHHHHHHHHHTCEEE---E-CT-TCSHHHHH-HH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC----------CEEEEEeCCccchHHHHHHHHhCCcee---c-hH-HHHHHHHH-hC
Confidence            89999999844 444555555543          4999999875   210  0  133322   3 33 32233433 22


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHH-HHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVI-RFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l-~~~~~~LkpgG~~v~~  183 (229)
                       ..+|+|+.....     .            ..+ ..+.+.|+++|++++.
T Consensus       245 -~~~d~vid~~g~-----~------------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          245 -GKFDVIIDATGA-----D------------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             -CCEEEEEECCCC-----C------------THHHHHHGGGEEEEEEEEEC
T ss_pred             -CCCCEEEECCCC-----h------------HHHHHHHHHHHhcCCEEEEE
Confidence             579999975421     1            134 6688999999998864

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=89.93  E-value=0.14  Score=43.34  Aligned_cols=92  Identities=21%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---CCCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---YPIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---~~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ |+ |.++..+++..         ...+|++++...-   .. .++. ++   | .+.+..+.+.+. 
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~---------g~~~V~~~~~~~~~~~~~-~ga~~~~---~-~~~~~~~~~~~~-  204 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTV---------PNVTVFGTASTFKHEAIK-DSVTHLF---D-RNADYVQEVKRI-  204 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTS---------TTCEEEEEECGGGHHHHG-GGSSEEE---E-TTSCHHHHHHHH-
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHc---------CCcEEEEeCCHHHHHHHH-cCCcEEE---c-CCccHHHHHHHh-
Confidence            578999999998 43 44444555443         2358888884320   11 2232 23   2 333344445543 


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .++.+|+|+-..     |.             ..+..+.+.|+++|++++.
T Consensus       205 ~~~g~Dvv~d~~-----g~-------------~~~~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          205 SAEGVDIVLDCL-----CG-------------DNTGKGLSLLKPLGTYILY  237 (349)
T ss_dssp             CTTCEEEEEEEC-----C--------------------CTTEEEEEEEEEE
T ss_pred             cCCCceEEEECC-----Cc-------------hhHHHHHHHhhcCCEEEEE
Confidence            356899999633     11             1124578899999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=89.63  E-value=0.23  Score=42.27  Aligned_cols=91  Identities=14%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             cC-CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--C---CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LR-PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--P---IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~-~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~---~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +. +|++||-+|+|+ |..+..+++..+          .+|+++|.++-.  .   --++..+  .|..+.+   .+.+.
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G----------a~Vi~~~~~~~~~~~~~~~lGa~~v--~~~~~~~---~~~~~  248 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG----------SKVTVISTSPSKKEEALKNFGADSF--LVSRDQE---QMQAA  248 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESCGGGHHHHHHTSCCSEE--EETTCHH---HHHHT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHhcCCceE--EeccCHH---HHHHh
Confidence            34 899999999765 555555555543          589999987611  0   1122221  2333322   23332


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .  +.+|+|+....     ...            .+..+.+.|+++|+++..
T Consensus       249 ~--~~~D~vid~~g-----~~~------------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          249 A--GTLDGIIDTVS-----AVH------------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             T--TCEEEEEECCS-----SCC------------CSHHHHHHEEEEEEEEEC
T ss_pred             h--CCCCEEEECCC-----cHH------------HHHHHHHHHhcCCEEEEE
Confidence            2  36999997432     110            123467789999998864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.60  E-value=0.86  Score=36.51  Aligned_cols=113  Identities=11%  Similarity=0.033  Sum_probs=64.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC-----CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP-----IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~-----~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .|+++|-.|++ |+++..+++.+..       ...+|+.+|.++-  ..     -..+.++ ..|+.+.+....+.+...
T Consensus         7 ~gk~~lVTGas-~gIG~a~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGT-HGMGLATVRRLVE-------GGAEVLLTGRNESNIARIREEFGPRVHAL-RSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHGGGEEEE-ECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhCCcceEE-EccCCCHHHHHHHHHHHH
Confidence            46788888855 5677777766542       2358999998751  11     1246778 899999765443332211


Q ss_pred             --CCCccEEEeCCCCCCCC-CCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         134 --DDKLDVVLSDMAPNATG-MREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 --~~~~D~V~sd~~~~~~g-~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                        -+..|+++.++.....+ ..+.+.  +. .++    -....++.+...++++|+++.
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~  136 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVF  136 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEE
Confidence              14799999987542211 111111  11 111    111344556667777888775

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=89.41  E-value=5.9  Score=32.90  Aligned_cols=72  Identities=13%  Similarity=-0.007  Sum_probs=44.9

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------C--------CCCCeEEecCCCCChhHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------P--------IDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------~--------~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++||-.| |+|.++..+++.+..       ...+|++++.++-.       .        -.++.++ .+|+.+.+....
T Consensus         2 ~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~   72 (372)
T 1db3_A            2 KVALITG-VTGQDGSYLAEFLLE-------KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH-YGDLSDTSNLTR   72 (372)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEECC---------------------CCEEEC-CCCSSCHHHHHH
T ss_pred             CEEEEEC-CCChHHHHHHHHHHH-------CCCEEEEEECCCcccchHHHHHHhhccccCCCceEEE-ECCCCCHHHHHH
Confidence            4677666 468888888876642       22589999876411       1        1356778 899999765443


Q ss_pred             HHHHhCCCCccEEEeCCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~  146 (229)
                      +..   +..+|+|+..+..
T Consensus        73 ~~~---~~~~d~vih~A~~   88 (372)
T 1db3_A           73 ILR---EVQPDEVYNLGAM   88 (372)
T ss_dssp             HHH---HHCCSEEEECCCC
T ss_pred             HHH---hcCCCEEEECCcc
Confidence            332   2258999987764

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=89.40  E-value=3  Score=33.57  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=47.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      .|++||-.|++ |+++..+++.+..       ...+|+.+|.+. ........+ .+|+.+......+.+.+.  -+..|
T Consensus        27 ~gk~vlVTGas-~gIG~aia~~la~-------~G~~V~~~~r~~-~~~~~~~~~-~~Dv~~~~~~~~~~~~~~~~~g~iD   96 (266)
T 3uxy_A           27 EGKVALVTGAA-GGIGGAVVTALRA-------AGARVAVADRAV-AGIAADLHL-PGDLREAAYADGLPGAVAAGLGRLD   96 (266)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHH-------TTCEEEECSSCC-TTSCCSEEC-CCCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH-------CCCEEEEEeCCH-HHHHhhhcc-CcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            46778877754 6677777766542       235899998876 333344555 789998764443322111  14699


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        97 ~lvnnAg~  104 (266)
T 3uxy_A           97 IVVNNAGV  104 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.02  E-value=4.6  Score=32.49  Aligned_cols=114  Identities=12%  Similarity=0.061  Sum_probs=64.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.++.....           .-..+.++ .+|+.+.+....+.
T Consensus        30 ~gk~~lVTGas-~GIG~aia~~la~-------~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~Dv~d~~~v~~~~  100 (271)
T 3v2g_A           30 AGKTAFVTGGS-RGIGAAIAKRLAL-------EGAAVALTYVNAAERAQAVVSEIEQAGGRAVAI-RADNRDAEAIEQAI  100 (271)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH-------CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEE-ECCCCCHHHHHHHH
Confidence            46788888865 5667776766542       23578888665311           01346678 89999976444332


Q ss_pred             HHhC--CCCccEEEeCCCCCCCC-CCccc--HHH-HHH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILK--DDKLDVVLSDMAPNATG-MREMD--HDL-ITQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~~~~g-~~~~d--~~~-~~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +...  -+..|+++.++.....+ ..+.+  .+. .++    -....++.+...++++|.+|.-
T Consensus       101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          101 RETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            2111  13699999987642211 11111  111 111    1123456677778888988753

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=88.98  E-value=4.7  Score=31.32  Aligned_cols=76  Identities=16%  Similarity=0.088  Sum_probs=49.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCC--cEEEEEeCCCCC-----C--CCCCeEEecCCCCChhHHHHHHHH-
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPK--GLVLSVDKLPIY-----P--IDGAVVLSKCDFTQPDIQDRLVTI-  131 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~--~~v~gvD~~~~~-----~--~~~~~~~~~~D~~~~~~~~~i~~~-  131 (229)
                      +.+||-.|+ +|+++..+++.+..       ..  .+|++++.++..     .  -.++.++ .+|+++.+....+.+. 
T Consensus         3 ~k~vlItGa-sggiG~~la~~l~~-------~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~-~~D~~~~~~~~~~~~~~   73 (250)
T 1yo6_A            3 PGSVVVTGA-NRGIGLGLVQQLVK-------DKNIRHIIATARDVEKATELKSIKDSRVHVL-PLTVTCDKSLDTFVSKV   73 (250)
T ss_dssp             CSEEEESSC-SSHHHHHHHHHHHT-------CTTCCEEEEEESSGGGCHHHHTCCCTTEEEE-ECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecC-CchHHHHHHHHHHh-------cCCCcEEEEEecCHHHHHHHHhccCCceEEE-EeecCCHHHHHHHHHHH
Confidence            467787775 57888888887752       22  589999887511     1  2356788 9999997644433322 


Q ss_pred             ---hCCCCccEEEeCCCC
Q psy1489         132 ---LKDDKLDVVLSDMAP  146 (229)
Q Consensus       132 ---~~~~~~D~V~sd~~~  146 (229)
                         +....+|+|+.++..
T Consensus        74 ~~~~g~~~id~li~~Ag~   91 (250)
T 1yo6_A           74 GEIVGSDGLSLLINNAGV   91 (250)
T ss_dssp             HHHHGGGCCCEEEECCCC
T ss_pred             HHhcCCCCCcEEEECCcc
Confidence               211269999988753

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=88.93  E-value=6.9  Score=31.37  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC---------------CCCeEEecCCCCChh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI---------------DGAVVLSKCDFTQPD  123 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~---------------~~~~~~~~~D~~~~~  123 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.++.+...  ..               ..+.++ +.|+++.+
T Consensus         5 ~~k~~lVTGas-~GIG~aia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~   75 (274)
T 3e03_A            5 SGKTLFITGAS-RGIGLAIALRAAR-------DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLAL-KCDIREED   75 (274)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEE-ECCTTCHH
T ss_pred             CCcEEEEECCC-ChHHHHHHHHHHH-------CCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEE-eCCCCCHH
Confidence            46788888876 5666666665542       23589999887521  11               135677 89999976


Q ss_pred             HHHHHHHHhC--CCCccEEEeCCCC
Q psy1489         124 IQDRLVTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       124 ~~~~i~~~~~--~~~~D~V~sd~~~  146 (229)
                      ....+.+.+.  -+..|+++.++..
T Consensus        76 ~v~~~~~~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           76 QVRAAVAATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            5443332221  1479999998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=88.84  E-value=2.2  Score=36.10  Aligned_cols=70  Identities=21%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC-CCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP-IDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~-~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      +.++||-|||  |..+..+++.+.        ....|+..|++.  ... .+.+..+ ..|+.+.+...   +.+.  .+
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~--------~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~d~~~l~---~~~~--~~   78 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLK--------DEFDVYIGDVNNENLEKVKEFATPL-KVDASNFDKLV---EVMK--EF   78 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHT--------TTSEEEEEESCHHHHHHHTTTSEEE-ECCTTCHHHHH---HHHT--TC
T ss_pred             CccEEEEECC--CHHHHHHHHHHh--------cCCCeEEEEcCHHHHHHHhccCCcE-EEecCCHHHHH---HHHh--CC
Confidence            3478999998  788888888775        446788888875  111 2345666 78988865433   3332  58


Q ss_pred             cEEEeCCCC
Q psy1489         138 DVVLSDMAP  146 (229)
Q Consensus       138 D~V~sd~~~  146 (229)
                      |+|++-.++
T Consensus        79 DvVi~~~p~   87 (365)
T 3abi_A           79 ELVIGALPG   87 (365)
T ss_dssp             SEEEECCCG
T ss_pred             CEEEEecCC
Confidence            999985543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.81  E-value=7.9  Score=30.97  Aligned_cols=113  Identities=17%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C---------------------CCCCCeEEecCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y---------------------PIDGAVVLSKCD  118 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~---------------------~~~~~~~~~~~D  118 (229)
                      .|++||--|++ |+++..+++.+..       ...+|+.+|.+.- .                     .-..+.++ ..|
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~-------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D   79 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAE-------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTA-EVD   79 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEE-ECC
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHH-------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEE-Ecc
Confidence            46788888865 5666676766542       2358999988620 0                     01246677 899


Q ss_pred             CCChhHHHHHHHHhC--CCCccEEEeCCCCCCCCCC-cccHHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         119 FTQPDIQDRLVTILK--DDKLDVVLSDMAPNATGMR-EMDHDL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~--~~~~D~V~sd~~~~~~g~~-~~d~~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.+.+....+.+.+.  -+..|+++.++.....+.. ..+.+. .++    -....++.+...++.+|.++.
T Consensus        80 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  151 (287)
T 3pxx_A           80 VRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT  151 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence            999765443322111  1379999998764322211 112221 111    112345566677788888775

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=88.76  E-value=1.1  Score=37.90  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------C-----------------------CC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------P-----------------------ID  109 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~-----------------------~~  109 (229)
                      +...|+.||||.......+....         +..+++-||.-.+.        .                       .+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~---------~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMF---------PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG  167 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHC---------TTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred             CCcEEEEeCCCCccHHHHhcCcC---------CCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCC
Confidence            45789999999999998887653         34678888873210        0                       14


Q ss_pred             CCeEEecCCCCChhHHHHHHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         110 GAVVLSKCDFTQPDIQDRLVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       110 ~~~~~~~~D~~~~~~~~~i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +...+ .+|+++.+....+.... +.....++++-+..     ...+.    +....++..+.... |+|.+++
T Consensus       168 ~~~~v-~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL-----~YL~~----~~~~~ll~~ia~~~-~~~~~v~  230 (334)
T 1rjd_A          168 RYKLA-ACDLNDITETTRLLDVCTKREIPTIVISECLL-----CYMHN----NESQLLINTIMSKF-SHGLWIS  230 (334)
T ss_dssp             SEEEE-ECCTTCHHHHHHHHHTTCCTTSCEEEEEESCG-----GGSCH----HHHHHHHHHHHHHC-SSEEEEE
T ss_pred             ceEEE-ecCCCCcHHHHHHHHhcCCCCCCEEEEEcchh-----hCCCH----HHHHHHHHHHHhhC-CCcEEEE
Confidence            56788 89999976544432223 23456788875532     11122    23445666666655 7888763

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=88.71  E-value=3  Score=34.64  Aligned_cols=72  Identities=14%  Similarity=0.050  Sum_probs=49.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--C-------CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--P-------IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~-------~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++||-.| |+|.++..+++.+..       ...+|++++.++-.  .       ..++.++ .+|+.+......+..  
T Consensus         9 ~~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~--   77 (357)
T 1rkx_A            9 GKRVFVTG-HTGFKGGWLSLWLQT-------MGATVKGYSLTAPTVPSLFETARVADGMQSE-IGDIRDQNKLLESIR--   77 (357)
T ss_dssp             TCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEESSCSSSSCHHHHTTTTTTSEEE-ECCTTCHHHHHHHHH--
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHh-------CCCeEEEEeCCCcccchhhHhhccCCceEEE-EccccCHHHHHHHHH--
Confidence            57888877 678888888876642       23589999987521  1       2367888 999999765443332  


Q ss_pred             CCCCccEEEeCCC
Q psy1489         133 KDDKLDVVLSDMA  145 (229)
Q Consensus       133 ~~~~~D~V~sd~~  145 (229)
                       +..+|+|+..+.
T Consensus        78 -~~~~d~vih~A~   89 (357)
T 1rkx_A           78 -EFQPEIVFHMAA   89 (357)
T ss_dssp             -HHCCSEEEECCS
T ss_pred             -hcCCCEEEECCC
Confidence             125899998765

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.67  E-value=0.038  Score=46.35  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             cCCCC-eeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CCe-EEecCCCCChhHHHHHH
Q psy1489          59 LRPGL-KVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GAV-VLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~-~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~~-~~~~~D~~~~~~~~~i~  129 (229)
                      +++|+ +||-.|+ |+ |..+..+++..+          .+|++++.++- ..+     ++. ++   |..+.+ ...+ 
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G----------a~vi~~~~~~~-~~~~~~~lGa~~v~---~~~~~~-~~~~-  210 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRG----------YDVVASTGNRE-AADYLKQLGASEVI---SREDVY-DGTL-  210 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHT----------CCEEEEESSSS-THHHHHHHTCSEEE---EHHHHC-SSCC-
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCC----------CEEEEEeCCHH-HHHHHHHcCCcEEE---ECCCch-HHHH-
Confidence            45675 8999998 55 666777777664          57999998751 111     121 11   100000 0000 


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ..+.+..+|+|+...     |.             ..+..+.+.|+++|++++.
T Consensus       211 ~~~~~~~~d~vid~~-----g~-------------~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          211 KALSKQQWQGAVDPV-----GG-------------KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CSSCCCCEEEEEESC-----CT-------------HHHHHHHTTEEEEEEEEEC
T ss_pred             HHhhcCCccEEEECC-----cH-------------HHHHHHHHhhcCCCEEEEE
Confidence            012234699998743     21             1355688899999999864

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=88.56  E-value=5.1  Score=32.10  Aligned_cols=77  Identities=14%  Similarity=0.080  Sum_probs=48.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------C-----------CCCCCeEEecCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------Y-----------PIDGAVVLSKCD  118 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~-----------~~~~~~~~~~~D  118 (229)
                      .|++||-.|++ |+++..+++.+..       ...+|+.+|.+.-           .           .-..+.++ ++|
T Consensus        12 ~gk~vlVTGas-~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D   82 (278)
T 3sx2_A           12 TGKVAFITGAA-RGQGRAHAVRLAA-------DGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVAR-QAD   82 (278)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH-------TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEE-ECC
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHH-------CCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEE-eCC
Confidence            46788888854 6677777766542       2358999987620           0           01246778 899


Q ss_pred             CCChhHHHHHHHHhC--CCCccEEEeCCCC
Q psy1489         119 FTQPDIQDRLVTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~--~~~~D~V~sd~~~  146 (229)
                      +++.+....+.+...  -+..|+++.++..
T Consensus        83 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           83 VRDRESLSAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            999765443332111  1469999998864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=88.56  E-value=0.54  Score=50.04  Aligned_cols=92  Identities=16%  Similarity=0.086  Sum_probs=0.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCc----EEEEEeCCC--CCCCC------CCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG----LVLSVDKLP--IYPID------GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~----~v~gvD~~~--~~~~~------~~~~~~~~D~~~~~~~~~i  128 (229)
                      +..+||++|.|+|+.+..+.+.++        ...    ..+-.|+++  .....      ++..- .-|..+       
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~--------~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~-~~d~~~------- 1303 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLN--------TQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQG-QWDPAN------- 1303 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTT--------TSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEE-CCCSSC-------
T ss_pred             CCceEEEECCCccHHHHHHHHhhc--------ccCcccceEEEecCChHHHHHHHHHhhhcccccc-cccccc-------


Q ss_pred             HHHh---CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         129 VTIL---KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       129 ~~~~---~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                         .   ....||+|++           .+...........+..+.++|+|||.+++
T Consensus      1304 ---~~~~~~~~ydlvia-----------~~vl~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1304 ---PAPGSLGKADLLVC-----------NCALATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp             ---CCC-----CCEEEE-----------ECC--------------------CCEEEE
T ss_pred             ---cccCCCCceeEEEE-----------cccccccccHHHHHHHHHHhcCCCcEEEE

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=88.16  E-value=5.2  Score=32.72  Aligned_cols=73  Identities=22%  Similarity=0.243  Sum_probs=47.2

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-------CC---CCCCeEEecCCCCChhHHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-------YP---IDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-------~~---~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++||-.| |+|.++..+++.+...+     ...+|+++|.++.       ..   ..++.++ .+|+++......+   
T Consensus         3 ~m~vlVTG-atG~iG~~l~~~L~~~g-----~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~---   72 (336)
T 2hun_A            3 SMKLLVTG-GMGFIGSNFIRYILEKH-----PDWEVINIDKLGYGSNPANLKDLEDDPRYTFV-KGDVADYELVKEL---   72 (336)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHHC-----TTCEEEEEECCCTTCCGGGGTTTTTCTTEEEE-ECCTTCHHHHHHH---
T ss_pred             CCeEEEEC-CCchHHHHHHHHHHHhC-----CCCEEEEEecCcccCchhHHhhhccCCceEEE-EcCCCCHHHHHHH---
Confidence            45788777 56888888877663110     1258999987531       11   2357788 8999997644333   


Q ss_pred             hCCCCccEEEeCCCC
Q psy1489         132 LKDDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~  146 (229)
                      +  ..+|+|+..+..
T Consensus        73 ~--~~~d~vih~A~~   85 (336)
T 2hun_A           73 V--RKVDGVVHLAAE   85 (336)
T ss_dssp             H--HTCSEEEECCCC
T ss_pred             h--hCCCEEEECCCC
Confidence            3  368999987754

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=88.12  E-value=3.4  Score=33.05  Aligned_cols=77  Identities=18%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---C--CCCCeEEecCCCCChhHHHHHHHHhC--
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---P--IDGAVVLSKCDFTQPDIQDRLVTILK--  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~--~~~~~~~~~~D~~~~~~~~~i~~~~~--  133 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|+.+|.++-.   .  -.++.++ .+|+.+.+....+.+.+.  
T Consensus        26 ~~k~vlVTGas-~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~   96 (260)
T 3gem_A           26 SSAPILITGAS-QRVGLHCALRLLE-------HGHRVIISYRTEHASVTELRQAGAVAL-YGDFSCETGIMAFIDLLKTQ   96 (260)
T ss_dssp             -CCCEEESSTT-SHHHHHHHHHHHH-------TTCCEEEEESSCCHHHHHHHHHTCEEE-ECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEeCChHHHHHHHHhcCCeEE-ECCCCCHHHHHHHHHHHHHh
Confidence            35678877754 6677777776642       23589999987621   0  1247788 999999765443332211  


Q ss_pred             CCCccEEEeCCCC
Q psy1489         134 DDKLDVVLSDMAP  146 (229)
Q Consensus       134 ~~~~D~V~sd~~~  146 (229)
                      -+..|+++.++..
T Consensus        97 ~g~iD~lv~nAg~  109 (260)
T 3gem_A           97 TSSLRAVVHNASE  109 (260)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2479999998864

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.12  E-value=6.1  Score=32.15  Aligned_cols=113  Identities=14%  Similarity=0.048  Sum_probs=64.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----C--------CCCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----Y--------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~--------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.+|.+.-    .        .-..+.++ .+|+.+.+....+
T Consensus        48 ~~k~vlVTGa-s~GIG~aia~~la~-------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~  118 (294)
T 3r3s_A           48 KDRKALVTGG-DSGIGRAAAIAYAR-------EGADVAINYLPAEEEDAQQVKALIEECGRKAVLL-PGDLSDESFARSL  118 (294)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEEC-CCCTTSHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEE-EecCCCHHHHHHH
Confidence            4678888885 46677777776642       2358888887621    0        01356777 8999997644433


Q ss_pred             HHHhC--CCCccEEEeCCCCCC--CCCCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         129 VTILK--DDKLDVVLSDMAPNA--TGMREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~~~--~g~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+.+.  -+..|+++.++....  ....+.+.  +. .++    -...+++.+...++++|++|.
T Consensus       119 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~  183 (294)
T 3r3s_A          119 VHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT  183 (294)
T ss_dssp             HHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             HHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence            22211  147899999876421  11112221  11 111    112455666777888898875

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=87.94  E-value=8.5  Score=30.98  Aligned_cols=76  Identities=13%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      +|+++|--|++. ++...+++.+..       ...+|+.+|.+.........++ ++|+++.+....+.+...  -+..|
T Consensus        10 ~GK~alVTGas~-GIG~aia~~la~-------~Ga~V~~~~r~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~G~iD   80 (261)
T 4h15_A           10 RGKRALITAGTK-GAGAATVSLFLE-------LGAQVLTTARARPEGLPEELFV-EADLTTKEGCAIVAEATRQRLGGVD   80 (261)
T ss_dssp             TTCEEEESCCSS-HHHHHHHHHHHH-------TTCEEEEEESSCCTTSCTTTEE-ECCTTSHHHHHHHHHHHHHHTSSCS
T ss_pred             CCCEEEEeccCc-HHHHHHHHHHHH-------cCCEEEEEECCchhCCCcEEEE-EcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578888888665 456666655532       2368999998765555555677 899999875544332211  24799


Q ss_pred             EEEeCCC
Q psy1489         139 VVLSDMA  145 (229)
Q Consensus       139 ~V~sd~~  145 (229)
                      +++.++.
T Consensus        81 ilVnnAG   87 (261)
T 4h15_A           81 VIVHMLG   87 (261)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998865

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=87.85  E-value=4.8  Score=32.73  Aligned_cols=76  Identities=12%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      .++..+||-.| |+|.++..+++.+..       ...+|++++.++-....++.++ .+|+++......+   +.+..+|
T Consensus         9 ~~~~~~vlVTG-atG~iG~~l~~~L~~-------~G~~V~~~~r~~~~~~l~~~~~-~~Dl~d~~~~~~~---~~~~~~d   76 (321)
T 2pk3_A            9 HHGSMRALITG-VAGFVGKYLANHLTE-------QNVEVFGTSRNNEAKLPNVEMI-SLDIMDSQRVKKV---ISDIKPD   76 (321)
T ss_dssp             ----CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEESCTTCCCTTEEEE-ECCTTCHHHHHHH---HHHHCCS
T ss_pred             ccCcceEEEEC-CCChHHHHHHHHHHH-------CCCEEEEEecCCccccceeeEE-ECCCCCHHHHHHH---HHhcCCC
Confidence            44556777665 578888888876642       2358999998762110167788 8999997654433   2224689


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +|+..+..
T Consensus        77 ~vih~A~~   84 (321)
T 2pk3_A           77 YIFHLAAK   84 (321)
T ss_dssp             EEEECCSC
T ss_pred             EEEEcCcc
Confidence            99987754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=87.80  E-value=9.3  Score=30.57  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=51.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .|+.+|--|++.| +...+++++..       ...+|+.+|+++-  .  .-..+..+ +.|+++.+..+.+.+.+  ++
T Consensus        10 ~GK~alVTGas~G-IG~aia~~la~-------~Ga~Vv~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~--g~   78 (242)
T 4b79_A           10 AGQQVLVTGGSSG-IGAAIAMQFAE-------LGAEVVALGLDADGVHAPRHPRIRRE-ELDITDSQRLQRLFEAL--PR   78 (242)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHH-------TTCEEEEEESSTTSTTSCCCTTEEEE-ECCTTCHHHHHHHHHHC--SC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHH-------CCCEEEEEeCCHHHHhhhhcCCeEEE-EecCCCHHHHHHHHHhc--CC
Confidence            4788888887765 55555555532       2368999998861  1  12356777 89999987666665555  47


Q ss_pred             ccEEEeCCCC
Q psy1489         137 LDVVLSDMAP  146 (229)
Q Consensus       137 ~D~V~sd~~~  146 (229)
                      .|+++.++..
T Consensus        79 iDiLVNNAGi   88 (242)
T 4b79_A           79 LDVLVNNAGI   88 (242)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998753

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=87.75  E-value=8  Score=32.12  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------------C-----CCCCCeEEecCCCCChh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------------Y-----PIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------------~-----~~~~~~~~~~~D~~~~~  123 (229)
                      .+++||-.| |+|.++..+++.+...+     ...+|+++|.++-            .     .-.++.++ .+|+++.+
T Consensus         9 ~~~~vlVTG-atG~IG~~l~~~L~~~~-----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~   81 (362)
T 3sxp_A            9 ENQTILITG-GAGFVGSNLAFHFQENH-----PKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVI-AADINNPL   81 (362)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHHC-----TTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEE-ECCTTCHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHhhC-----CCCeEEEEECCCccccccccchhhhhhhhhccccCceEE-ECCCCCHH
Confidence            467888887 67888888887764100     1358999987541            1     11246788 99999976


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCC
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      ....+    ....+|+|+..+..
T Consensus        82 ~~~~~----~~~~~D~vih~A~~  100 (362)
T 3sxp_A           82 DLRRL----EKLHFDYLFHQAAV  100 (362)
T ss_dssp             HHHHH----TTSCCSEEEECCCC
T ss_pred             HHHHh----hccCCCEEEECCcc
Confidence            55443    23579999987753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.73  E-value=7.6  Score=30.25  Aligned_cols=94  Identities=10%  Similarity=0.086  Sum_probs=57.5

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ..+|+=+|+  |.++..+++.+.        ..+.|+++|.++-    .. .++.++ .+|.++++....    ..-..+
T Consensus         9 ~~~viI~G~--G~~G~~la~~L~--------~~g~v~vid~~~~~~~~~~-~~~~~i-~gd~~~~~~l~~----a~i~~a   72 (234)
T 2aef_A            9 SRHVVICGW--SESTLECLRELR--------GSEVFVLAEDENVRKKVLR-SGANFV-HGDPTRVSDLEK----ANVRGA   72 (234)
T ss_dssp             -CEEEEESC--CHHHHHHHHHST--------TSEEEEEESCGGGHHHHHH-TTCEEE-ESCTTCHHHHHH----TTCTTC
T ss_pred             CCEEEEECC--ChHHHHHHHHHH--------hCCeEEEEECCHHHHHHHh-cCCeEE-EcCCCCHHHHHh----cCcchh
Confidence            457887877  678888888764        2233899998761    12 578888 999998764332    222468


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      |+|++....         ....     ..+....+.+.|+..++..+.
T Consensus        73 d~vi~~~~~---------d~~n-----~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           73 RAVIVDLES---------DSET-----IHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             SEEEECCSC---------HHHH-----HHHHHHHHHHCSSSEEEEECS
T ss_pred             cEEEEcCCC---------cHHH-----HHHHHHHHHHCCCCeEEEEEC
Confidence            999984421         1111     122334455677767776653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=87.63  E-value=2.5  Score=34.19  Aligned_cols=74  Identities=14%  Similarity=0.115  Sum_probs=47.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC---------CCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP---------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~---------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+.+||-.|+ +|+++..+++.+..       ...+|++++.++-  ..         ...+.++ .+|+++.+....+.
T Consensus        27 ~~k~vlITGa-sggIG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~v~~~~   97 (286)
T 1xu9_A           27 QGKKVIVTGA-SKGIGREMAYHLAK-------MGAHVVVTARSKETLQKVVSHCLELGAASAHYI-AGTMEDMTFAEQFV   97 (286)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEE-ECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEE-eCCCCCHHHHHHHH
Confidence            4678888885 46777777776542       2358999998751  10         1246778 89999976444332


Q ss_pred             HHhC--CCCccEEEeC
Q psy1489         130 TILK--DDKLDVVLSD  143 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd  143 (229)
                      +.+.  -+.+|+++.+
T Consensus        98 ~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           98 AQAGKLMGGLDMLILN  113 (286)
T ss_dssp             HHHHHHHTSCSEEEEC
T ss_pred             HHHHHHcCCCCEEEEC
Confidence            2111  1369999987

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=87.55  E-value=2.2  Score=33.44  Aligned_cols=70  Identities=11%  Similarity=0.074  Sum_probs=42.6

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD  143 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd  143 (229)
                      +||-.|+ +|+++..+++.+..       ...+|+++|.++- ....  .+ .+|+.+......+.+.+ .+.+|+|+.+
T Consensus         3 ~vlVtGa-sg~iG~~l~~~L~~-------~g~~V~~~~r~~~-~~~~--~~-~~D~~~~~~~~~~~~~~-~~~~d~vi~~   69 (255)
T 2dkn_A            3 VIAITGS-ASGIGAALKELLAR-------AGHTVIGIDRGQA-DIEA--DL-STPGGRETAVAAVLDRC-GGVLDGLVCC   69 (255)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEESSSS-SEEC--CT-TSHHHHHHHHHHHHHHH-TTCCSEEEEC
T ss_pred             EEEEeCC-CcHHHHHHHHHHHh-------CCCEEEEEeCChh-Hccc--cc-cCCcccHHHHHHHHHHc-CCCccEEEEC
Confidence            4666664 57888888876642       2358999998762 1111  14 67776655443333323 2479999998


Q ss_pred             CCC
Q psy1489         144 MAP  146 (229)
Q Consensus       144 ~~~  146 (229)
                      +..
T Consensus        70 Ag~   72 (255)
T 2dkn_A           70 AGV   72 (255)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=87.46  E-value=0.21  Score=41.67  Aligned_cols=89  Identities=19%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CCC--CCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YPI--DGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~~--~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+| +|+ |.++..+++..+          .+|++++..+- ...  -++. ++   |..+.+.   +.+.+
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~G----------a~vi~~~~~~~~~~~~~lGa~~~i---~~~~~~~---~~~~~  213 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKG----------TTVITTASKRNHAFLKALGAEQCI---NYHEEDF---LLAIS  213 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEECHHHHHHHHHHTCSEEE---ETTTSCH---HHHCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcC----------CEEEEEeccchHHHHHHcCCCEEE---eCCCcch---hhhhc
Confidence            57899999996 777 777777777754          58888874321 000  1222 22   2222210   11112


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                        ..+|+|+-..     |     .        ..+..+.+.|+++|++++.
T Consensus       214 --~g~D~v~d~~-----g-----~--------~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          214 --TPVDAVIDLV-----G-----G--------DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             --SCEEEEEESS-----C-----H--------HHHHHHGGGEEEEEEEEEC
T ss_pred             --cCCCEEEECC-----C-----c--------HHHHHHHHhccCCCEEEEe
Confidence              4699999733     2     1        1235688999999999863

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=87.27  E-value=7.6  Score=31.06  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=48.7

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C--CCCCCCeEEecCCCCChhHHHHHHHHhC--CC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I--YPIDGAVVLSKCDFTQPDIQDRLVTILK--DD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~--~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~  135 (229)
                      +++||--|++ |+++..+++.+..       ...+|+.++.++  .  .....+.++ ..|+++.+....+.+...  -+
T Consensus        16 ~k~vlVTGas-~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~~~~~~~g   86 (266)
T 3p19_A           16 KKLVVITGAS-SGIGEAIARRFSE-------EGHPLLLLARRVERLKALNLPNTLCA-QVDVTDKYTFDTAITRAEKIYG   86 (266)
T ss_dssp             CCEEEEESTT-SHHHHHHHHHHHH-------TTCCEEEEESCHHHHHTTCCTTEEEE-ECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHhhcCCceEE-EecCCCHHHHHHHHHHHHHHCC
Confidence            5678877765 6677777766542       235899998874  1  122356778 899999765443332211  13


Q ss_pred             CccEEEeCCCC
Q psy1489         136 KLDVVLSDMAP  146 (229)
Q Consensus       136 ~~D~V~sd~~~  146 (229)
                      ..|+++.++..
T Consensus        87 ~iD~lvnnAg~   97 (266)
T 3p19_A           87 PADAIVNNAGM   97 (266)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999998764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=86.88  E-value=11  Score=30.40  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC---------------CCCeEEecCCCCChh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI---------------DGAVVLSKCDFTQPD  123 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~---------------~~~~~~~~~D~~~~~  123 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.++.++.  ..+               ..+.++ ++|+++.+
T Consensus         8 ~~k~vlVTGas-~GIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~   78 (285)
T 3sc4_A            8 RGKTMFISGGS-RGIGLAIAKRVAA-------DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPI-VGDIRDGD   78 (285)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHT-------TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEE-ECCTTSHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEE-ECCCCCHH
Confidence            46778888865 5677777776642       2358999988762  111               246677 89999976


Q ss_pred             HHHHHHHHhC--CCCccEEEeCCCC
Q psy1489         124 IQDRLVTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       124 ~~~~i~~~~~--~~~~D~V~sd~~~  146 (229)
                      ....+.+.+.  -+..|+++.++..
T Consensus        79 ~v~~~~~~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           79 AVAAAVAKTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            5443332211  1379999998764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=86.86  E-value=9.8  Score=29.87  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=47.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D  138 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.++.++ .....+..+ ..|+.+.+....+.+...  -+..|
T Consensus        14 ~~k~vlVTGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~-~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~g~id   83 (247)
T 1uzm_A           14 VSRSVLVTGG-NRGIGLAIAQRLAA-------DGHKVAVTHRGS-GAPKGLFGV-EVDVTDSDAVDRAFTAVEEHQGPVE   83 (247)
T ss_dssp             CCCEEEETTT-TSHHHHHHHHHHHH-------TTCEEEEEESSS-CCCTTSEEE-ECCTTCHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHH-------CCCEEEEEeCCh-HHHHHhcCe-eccCCCHHHHHHHHHHHHHHcCCCC
Confidence            3567887775 57777777776642       235899998876 233344446 899999765443322111  14689


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        84 ~lv~~Ag~   91 (247)
T 1uzm_A           84 VLVSNAGL   91 (247)
T ss_dssp             EEEEECSC
T ss_pred             EEEECCCC
Confidence            99988754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=86.86  E-value=2.3  Score=37.02  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      +..|+=+|+  |.++..+++.+..       ....|+++|.++-  .  ...++.++ .+|.+++++...    ..-..+
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~-------~g~~vvvId~d~~~v~~~~~~g~~vi-~GDat~~~~L~~----agi~~A   69 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLS-------SGVKMVVLDHDPDHIETLRKFGMKVF-YGDATRMDLLES----AGAAKA   69 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHH-------TTCCEEEEECCHHHHHHHHHTTCCCE-ESCTTCHHHHHH----TTTTTC
T ss_pred             CCeEEEECC--CHHHHHHHHHHHH-------CCCCEEEEECCHHHHHHHHhCCCeEE-EcCCCCHHHHHh----cCCCcc
Confidence            356777776  5677777766542       2357999999871  1  12366677 899999875432    233578


Q ss_pred             cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      |+|++....         ....     ..+....+.+.|...++.....
T Consensus        70 ~~viv~~~~---------~~~n-----~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           70 EVLINAIDD---------PQTN-----LQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             SEEEECCSS---------HHHH-----HHHHHHHHHHCTTCEEEEEESS
T ss_pred             CEEEECCCC---------hHHH-----HHHHHHHHHhCCCCeEEEEECC
Confidence            999884421         2111     2234455667788888776643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=86.81  E-value=0.45  Score=40.12  Aligned_cols=66  Identities=17%  Similarity=0.131  Sum_probs=43.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      +.+|+||.||.|+++..+... |         ...|.++|+++..      ..+..  . .+|+.+...     ..+  .
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G---------~~~v~~~e~d~~a~~t~~~N~~~~--~-~~Di~~~~~-----~~~--~   70 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-G---------AECVYSNEWDKYAQEVYEMNFGEK--P-EGDITQVNE-----KTI--P   70 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-T---------CEEEEEECCCHHHHHHHHHHHSCC--C-BSCGGGSCG-----GGS--C
T ss_pred             CCcEEEECCCcCHHHHHHHHC-C---------CeEEEEEeCCHHHHHHHHHHcCCC--C-cCCHHHcCH-----hhC--C
Confidence            578999999999999887654 2         3478899998611      11221  1 466665321     112  2


Q ss_pred             CccEEEeCCCCC
Q psy1489         136 KLDVVLSDMAPN  147 (229)
Q Consensus       136 ~~D~V~sd~~~~  147 (229)
                      .+|+|+.+.++.
T Consensus        71 ~~D~l~~gpPCQ   82 (327)
T 2c7p_A           71 DHDILCAGFPCQ   82 (327)
T ss_dssp             CCSEEEEECCCT
T ss_pred             CCCEEEECCCCC
Confidence            589999987753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=86.72  E-value=4.3  Score=33.45  Aligned_cols=72  Identities=17%  Similarity=0.057  Sum_probs=46.9

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------C-----------CCCCeEEecCCCCChhHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------P-----------IDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~-----------~~~~~~~~~~D~~~~~~~  125 (229)
                      ++||-.| |+|.++..+++.+..       ...+|+++|.+.-.      .           -.++.++ .+|+.+.+..
T Consensus         3 ~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~-~~D~~~~~~~   73 (348)
T 1ek6_A            3 EKVLVTG-GAGYIGSHTVLELLE-------AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE-EMDILDQGAL   73 (348)
T ss_dssp             SEEEEET-TTSHHHHHHHHHHHH-------TTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEE-ECCTTCHHHH
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHH-------CCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEE-ECCCCCHHHH
Confidence            5677776 568888888876642       22579999865311      0           1357888 9999997654


Q ss_pred             HHHHHHhCCCCccEEEeCCCC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      ..+..   ...+|+|+..+..
T Consensus        74 ~~~~~---~~~~d~vih~A~~   91 (348)
T 1ek6_A           74 QRLFK---KYSFMAVIHFAGL   91 (348)
T ss_dssp             HHHHH---HCCEEEEEECCSC
T ss_pred             HHHHH---hcCCCEEEECCCC
Confidence            43322   2268999987653

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=86.61  E-value=9.3  Score=32.05  Aligned_cols=72  Identities=15%  Similarity=0.041  Sum_probs=49.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----CCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----IDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .+++||-.| |+|.++..+++.+..       ...+|++++.++-..    ..++.++ .+|+.+.+....   .+.  .
T Consensus        28 ~~~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~---~~~--~   93 (379)
T 2c5a_A           28 ENLKISITG-AGGFIASHIARRLKH-------EGHYVIASDWKKNEHMTEDMFCDEFH-LVDLRVMENCLK---VTE--G   93 (379)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEESSCCSSSCGGGTCSEEE-ECCTTSHHHHHH---HHT--T
T ss_pred             cCCeEEEEC-CccHHHHHHHHHHHH-------CCCeEEEEECCCccchhhccCCceEE-ECCCCCHHHHHH---HhC--C
Confidence            457888888 468888888876642       235899999875211    2367888 999999764433   332  6


Q ss_pred             ccEEEeCCCC
Q psy1489         137 LDVVLSDMAP  146 (229)
Q Consensus       137 ~D~V~sd~~~  146 (229)
                      +|+|+..+..
T Consensus        94 ~d~Vih~A~~  103 (379)
T 2c5a_A           94 VDHVFNLAAD  103 (379)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECcee
Confidence            8999987654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=86.56  E-value=3.8  Score=33.99  Aligned_cols=71  Identities=15%  Similarity=0.072  Sum_probs=48.9

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC---------------CCCCeEEecCCCCChhHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP---------------IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~---------------~~~~~~~~~~D~~~~~~~~  126 (229)
                      +++||-.| |+|.++..+++.+..       ...+|++++.++...               ..++.++ .+|+.+.....
T Consensus        27 ~~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~   97 (352)
T 1sb8_A           27 PKVWLITG-VAGFIGSNLLETLLK-------LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFI-QGDIRNLDDCN   97 (352)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEE-ECCTTSHHHHH
T ss_pred             CCeEEEEC-CCcHHHHHHHHHHHH-------CCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEE-ECCCCCHHHHH
Confidence            57899888 578888888876642       235899998865210               1467888 99999975443


Q ss_pred             HHHHHhCCCCccEEEeCCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~  146 (229)
                         ..+.  .+|+|+..+..
T Consensus        98 ---~~~~--~~d~vih~A~~  112 (352)
T 1sb8_A           98 ---NACA--GVDYVLHQAAL  112 (352)
T ss_dssp             ---HHHT--TCSEEEECCSC
T ss_pred             ---HHhc--CCCEEEECCcc
Confidence               3332  68999987653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.55  E-value=2.7  Score=31.48  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCC-CcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHh-CCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQP-KGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTIL-KDD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~-~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~-~~~  135 (229)
                      +.+|+-+|+|  ..+..+++.+..       . ...|+++|.++-  .  ...++.++ .+|..+.+...   + . .-.
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~-------~~g~~V~vid~~~~~~~~~~~~g~~~~-~gd~~~~~~l~---~-~~~~~  104 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRA-------RYGKISLGIEIREEAAQQHRSEGRNVI-SGDATDPDFWE---R-ILDTG  104 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHH-------HHCSCEEEEESCHHHHHHHHHTTCCEE-ECCTTCHHHHH---T-BCSCC
T ss_pred             CCcEEEECCC--HHHHHHHHHHHh-------ccCCeEEEEECCHHHHHHHHHCCCCEE-EcCCCCHHHHH---h-ccCCC
Confidence            5688888875  555555554421       1 257999999861  1  11356667 78888765322   1 2 234


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+|+|+...+.         ....    ..+ ....+.+.|++.++...
T Consensus       105 ~ad~vi~~~~~---------~~~~----~~~-~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          105 HVKLVLLAMPH---------HQGN----QTA-LEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CCCEEEECCSS---------HHHH----HHH-HHHHHHTTCCSEEEEEE
T ss_pred             CCCEEEEeCCC---------hHHH----HHH-HHHHHHHCCCCEEEEEE
Confidence            68999983321         1111    112 22445567777877654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=86.46  E-value=2.8  Score=33.44  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CC---CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YP---IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~---~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+.+||-.|+ +|+++..+++.+..       ...+|+.+|.++-         ..   -.++.++ .+|+++.+....+
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~D~~~~~~v~~~   76 (267)
T 2gdz_A            6 NGKVALVTGA-AQGIGRAFAEALLL-------KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFI-QCDVADQQQLRDT   76 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEE-ECCTTSHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEE-ecCCCCHHHHHHH
Confidence            3567888885 56777777766542       2358999987641         01   1246677 8999997644333


Q ss_pred             HHHhC--CCCccEEEeCCCC
Q psy1489         129 VTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~  146 (229)
                      .+...  -+.+|+++.++..
T Consensus        77 ~~~~~~~~g~id~lv~~Ag~   96 (267)
T 2gdz_A           77 FRKVVDHFGRLDILVNNAGV   96 (267)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence            22110  1368999998753

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=86.36  E-value=5.1  Score=31.70  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCC---cEEEEEeCCCCCC---------CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPK---GLVLSVDKLPIYP---------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~---~~v~gvD~~~~~~---------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+.+||-.|+ +|+++..+++.+..       ..   .+|+.++.++...         -.++.++ .+|+.+.+....+
T Consensus        20 ~~k~vlITGa-sggIG~~la~~L~~-------~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~   90 (267)
T 1sny_A           20 HMNSILITGC-NRGLGLGLVKALLN-------LPQPPQHLFTTCRNREQAKELEDLAKNHSNIHIL-EIDLRNFDAYDKL   90 (267)
T ss_dssp             CCSEEEESCC-SSHHHHHHHHHHHT-------SSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEE-ECCTTCGGGHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHh-------cCCCCcEEEEEecChhhhHHHHHhhccCCceEEE-EecCCChHHHHHH
Confidence            4567887775 57888888887752       12   5899999875210         1257788 8999997654433


Q ss_pred             HH----HhCCCCccEEEeCCCC
Q psy1489         129 VT----ILKDDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~----~~~~~~~D~V~sd~~~  146 (229)
                      .+    .+....+|+|+.++..
T Consensus        91 ~~~~~~~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           91 VADIEGVTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HHHHHHHHGGGCCSEEEECCCC
T ss_pred             HHHHHHhcCCCCccEEEECCCc
Confidence            32    2222269999998754

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=86.35  E-value=8.1  Score=32.40  Aligned_cols=74  Identities=23%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHh-ccCCCCCCCCcEEEEEeCCCCCC------------------------CCC---CeE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVN-SHGYDSKQPKGLVLSVDKLPIYP------------------------IDG---AVV  113 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~-~~~~~~~~~~~~v~gvD~~~~~~------------------------~~~---~~~  113 (229)
                      +++||-.| |+|.++..+++.+. .       ...+|+++|.++-..                        ..+   +.+
T Consensus         2 ~m~vlVTG-atG~iG~~l~~~L~~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (397)
T 1gy8_A            2 HMRVLVCG-GAGYIGSHFVRALLRD-------TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAAL   73 (397)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHH-------CCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEE
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHh-------CCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEE
Confidence            35777776 56888888887653 2       335899998764211                        124   788


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      + .+|+.+......+...+  +.+|+|+..+..
T Consensus        74 ~-~~Dl~d~~~~~~~~~~~--~~~d~vih~A~~  103 (397)
T 1gy8_A           74 E-VGDVRNEDFLNGVFTRH--GPIDAVVHMCAF  103 (397)
T ss_dssp             E-ESCTTCHHHHHHHHHHS--CCCCEEEECCCC
T ss_pred             E-ECCCCCHHHHHHHHHhc--CCCCEEEECCCc
Confidence            8 99999976544333211  349999987754

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=86.29  E-value=5.8  Score=32.16  Aligned_cols=67  Identities=19%  Similarity=0.190  Sum_probs=44.0

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      +||-.| |+|.++..+++.+.        ..+.+++++...-.    ...++.++ .+|+.+ ....   ..+.  .+|.
T Consensus         3 ~vlVTG-atG~iG~~l~~~L~--------~~g~~v~~~~~~~~~~~~~~~~~~~~-~~Dl~~-~~~~---~~~~--~~d~   66 (313)
T 3ehe_A            3 LIVVTG-GAGFIGSHVVDKLS--------ESNEIVVIDNLSSGNEEFVNEAARLV-KADLAA-DDIK---DYLK--GAEE   66 (313)
T ss_dssp             CEEEET-TTSHHHHHHHHHHT--------TTSCEEEECCCSSCCGGGSCTTEEEE-CCCTTT-SCCH---HHHT--TCSE
T ss_pred             EEEEEC-CCchHHHHHHHHHH--------hCCCEEEEEcCCCCChhhcCCCcEEE-ECcCCh-HHHH---HHhc--CCCE
Confidence            566666 67999999998875        44577777654311    12457788 899987 3322   2232  6899


Q ss_pred             EEeCCCC
Q psy1489         140 VLSDMAP  146 (229)
Q Consensus       140 V~sd~~~  146 (229)
                      |+..+..
T Consensus        67 vih~a~~   73 (313)
T 3ehe_A           67 VWHIAAN   73 (313)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9976653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=86.29  E-value=1.2  Score=39.66  Aligned_cols=72  Identities=11%  Similarity=0.072  Sum_probs=46.3

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------CCCCCeEEecCCCCChhH--------
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------PIDGAVVLSKCDFTQPDI--------  124 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~~~~~~~~~~~D~~~~~~--------  124 (229)
                      ..+|+||.||.|+++.-+.+. |         --.|.++|+++..         ..++..++ .+|+.+...        
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G---------~~~v~avE~d~~A~~ty~~N~~~~p~~~~~-~~DI~~i~~~~~~~~~~  156 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-G---------GQCVFTSEWNKHAVRTYKANHYCDPATHHF-NEDIRDITLSHQEGVSD  156 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-T---------EEEEEEECCCHHHHHHHHHHSCCCTTTCEE-ESCTHHHHCTTCTTSCH
T ss_pred             cceEEEecCCccHHHHHHHHC-C---------CEEEEEEeCCHHHHHHHHHhcccCCCccee-ccchhhhhhccccccch
Confidence            468999999999999886542 2         1358999998621         12455666 788876431        


Q ss_pred             ---HHHHHHHhCCCCccEEEeCCCC
Q psy1489         125 ---QDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       125 ---~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                         ...+...+  ..+|+|+...++
T Consensus       157 ~~~~~~i~~~~--~~~Dvl~gGpPC  179 (482)
T 3me5_A          157 EAAAEHIRQHI--PEHDVLLAGFPC  179 (482)
T ss_dssp             HHHHHHHHHHS--CCCSEEEEECCC
T ss_pred             hhHHhhhhhcC--CCCCEEEecCCC
Confidence               11122222  358999987654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=86.26  E-value=14  Score=31.03  Aligned_cols=77  Identities=12%  Similarity=0.103  Sum_probs=48.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC---------------CCCeEEecCCCCChh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI---------------DGAVVLSKCDFTQPD  123 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~---------------~~~~~~~~~D~~~~~  123 (229)
                      .|++||-.|++ |+++..+++++..       ...+|+.++.++..  .+               ..+.++ ..|+++.+
T Consensus        44 ~gk~vlVTGas-~GIG~aia~~La~-------~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~-~~Dv~d~~  114 (346)
T 3kvo_A           44 AGCTVFITGAS-RGIGKAIALKAAK-------DGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPC-IVDVRDEQ  114 (346)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHT-------TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEE-ECCTTCHH
T ss_pred             CCCEEEEeCCC-hHHHHHHHHHHHH-------CCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEE-EccCCCHH
Confidence            46788877766 5667777766642       23588888887621  11               135677 89999986


Q ss_pred             HHHHHHHHhCC--CCccEEEeCCCC
Q psy1489         124 IQDRLVTILKD--DKLDVVLSDMAP  146 (229)
Q Consensus       124 ~~~~i~~~~~~--~~~D~V~sd~~~  146 (229)
                      ....+.+.+.+  +..|+++.++..
T Consensus       115 ~v~~~~~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          115 QISAAVEKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            54433322211  379999998764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=86.25  E-value=5.7  Score=31.78  Aligned_cols=77  Identities=12%  Similarity=0.003  Sum_probs=49.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+.+||-.|+ +|+++..+++.+..       ...+|+.+|.++-  ..        -..+.++ .+|+.+.+....+.+
T Consensus        30 ~~k~vlITGa-sggIG~~la~~L~~-------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~~~  100 (272)
T 1yb1_A           30 TGEIVLITGA-GHGIGRLTAYEFAK-------LKSKLVLWDINKHGLEETAAKCKGLGAKVHTF-VVDCSNREDIYSSAK  100 (272)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHH-------CCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEE-EeeCCCHHHHHHHHH
Confidence            4678888775 57788887776642       2358999988751  10        1256778 899999764443322


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+.+|+|+.++..
T Consensus       101 ~~~~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A          101 KVKAEIGDVSILVNNAGV  118 (272)
T ss_dssp             HHHHHTCCCSEEEECCCC
T ss_pred             HHHHHCCCCcEEEECCCc
Confidence            111  1469999998764

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=86.04  E-value=11  Score=30.32  Aligned_cols=78  Identities=22%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .+.+||-.|++. ++++..+++.+..       ...+|+.++.++.        .....+.++ .+|+++.+....+.+.
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHR-------EGAELAFTYVGQFKDRVEKLCAEFNPAAVL-PCDVISDQEIKDLFVE   96 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHH-------TTCEEEEEECTTCHHHHHHHHGGGCCSEEE-ECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-------cCCEEEEeeCchHHHHHHHHHHhcCCceEE-EeecCCHHHHHHHHHH
Confidence            467888888643 5677777766542       2358999988751        122357888 9999997654443322


Q ss_pred             hC--CCCccEEEeCCCC
Q psy1489         132 LK--DDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~--~~~~D~V~sd~~~  146 (229)
                      +.  -+..|+++.++..
T Consensus        97 ~~~~~g~id~li~nAg~  113 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAF  113 (280)
T ss_dssp             HHHHCSSCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCcc
Confidence            21  1478999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=86.02  E-value=7.9  Score=27.96  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CC--CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YP--IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~--~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ..+|+=+|+  |.++..+++.+..       ....|+.+|.++.      ..  ..++.++ .+|.++++.....    .
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~-------~g~~V~vid~~~~~~~~~~~~~~~~~~~~i-~gd~~~~~~l~~a----~   68 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQ-------RGQNVTVISNLPEDDIKQLEQRLGDNADVI-PGDSNDSSVLKKA----G   68 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHH-------TTCCEEEEECCCHHHHHHHHHHHCTTCEEE-ESCTTSHHHHHHH----T
T ss_pred             CCcEEEECC--CHHHHHHHHHHHH-------CCCCEEEEECCChHHHHHHHHhhcCCCeEE-EcCCCCHHHHHHc----C
Confidence            346777765  7777777776631       2247999998741      11  2368888 9999987654321    1


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      -..+|+|++....         ....     ..+....+.+.|...++.....
T Consensus        69 i~~ad~vi~~~~~---------d~~n-----~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           69 IDRCRAILALSDN---------DADN-----AFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             TTTCSEEEECSSC---------HHHH-----HHHHHHHHHHTSSSCEEEECSS
T ss_pred             hhhCCEEEEecCC---------hHHH-----HHHHHHHHHHCCCCEEEEEECC
Confidence            2468999984421         1111     2233445556677777775543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=86.02  E-value=0.94  Score=41.95  Aligned_cols=45  Identities=11%  Similarity=0.056  Sum_probs=27.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhcc-CCCCCCC--CcEEEEEeCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSH-GYDSKQP--KGLVLSVDKLPI  105 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~-~~~~~~~--~~~v~gvD~~~~  105 (229)
                      +..+|+|+|.|+|.....+.+..... ...|..+  ..+++++|..|+
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~  105 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPL  105 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCC
Confidence            44699999999998777666542100 0001111  247899998663

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=85.92  E-value=12  Score=30.16  Aligned_cols=69  Identities=19%  Similarity=0.153  Sum_probs=45.8

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL  141 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~  141 (229)
                      ++||-.| |+|.++..+++.+..       ...+|++++.++ ...++++.++ .+|+. .+...   +.+.  .+|+|+
T Consensus         3 ~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~-~~Dl~-~~~~~---~~~~--~~d~Vi   67 (311)
T 3m2p_A            3 LKIAVTG-GTGFLGQYVVESIKN-------DGNTPIILTRSIGNKAINDYEYR-VSDYT-LEDLI---NQLN--DVDAVV   67 (311)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEESCCC-----CCEEE-ECCCC-HHHHH---HHTT--TCSEEE
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHh-------CCCEEEEEeCCCCcccCCceEEE-Ecccc-HHHHH---Hhhc--CCCEEE
Confidence            5677766 478888888876642       225899999874 1124478888 99999 65433   3343  799999


Q ss_pred             eCCCC
Q psy1489         142 SDMAP  146 (229)
Q Consensus       142 sd~~~  146 (229)
                      ..+..
T Consensus        68 h~a~~   72 (311)
T 3m2p_A           68 HLAAT   72 (311)
T ss_dssp             ECCCC
T ss_pred             Ecccc
Confidence            87654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=85.87  E-value=5  Score=31.01  Aligned_cols=94  Identities=17%  Similarity=0.017  Sum_probs=56.3

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC---CCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP---IDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      +|+=+|+  |.++..+++.+..       ....|+.+|.++  ...   ..+..++ .+|.++......    ..-..+|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~-------~g~~v~vid~~~~~~~~l~~~~~~~~i-~gd~~~~~~l~~----a~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLS-------RKYGVVIINKDRELCEEFAKKLKATII-HGDGSHKEILRD----AEVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHSSSEEE-ESCTTSHHHHHH----HTCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHh-------CCCeEEEEECCHHHHHHHHHHcCCeEE-EcCCCCHHHHHh----cCcccCC
Confidence            4666665  7788887776642       235799999886  111   2367788 999999765432    2234789


Q ss_pred             EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      +|++....         ....     ..+....+.+.+...++..+.
T Consensus        68 ~vi~~~~~---------d~~n-----~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           68 VVVILTPR---------DEVN-----LFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             EEEECCSC---------HHHH-----HHHHHHHHHTSCCCEEEECCC
T ss_pred             EEEEecCC---------cHHH-----HHHHHHHHHHcCCCeEEEEEe
Confidence            99984421         1111     223334455566777776553

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=85.73  E-value=7.9  Score=31.12  Aligned_cols=113  Identities=16%  Similarity=0.042  Sum_probs=62.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---C--------CCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---P--------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~--------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .++++|-.|+ +|+++..+++.+..       ...+|+.++.++..   .        -..+.++ ..|+.+.+....+.
T Consensus        28 ~~k~vlVTGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~   98 (283)
T 1g0o_A           28 EGKVALVTGA-GRGIGREMAMELGR-------RGCKVIVNYANSTESAEEVVAAIKKNGSDAACV-KANVGVVEDIVRMF   98 (283)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHH-------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEE-EcCCCCHHHHHHHH
Confidence            4677887776 46777777776642       23588888876511   0        1246777 89999976443332


Q ss_pred             HHhC--CCCccEEEeCCCCCCCC-CCccc--HHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILK--DDKLDVVLSDMAPNATG-MREMD--HDL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~~~~g-~~~~d--~~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +...  -+.+|+++.++.....+ ..+.+  .+. .++    -....++.+...|+.+|++|.
T Consensus        99 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  161 (283)
T 1g0o_A           99 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL  161 (283)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence            2111  13689999987642211 11111  111 111    111344556666677788875

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=85.70  E-value=4.4  Score=31.97  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCCC----------CCCCCeEEecCCCCCh-hHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIY----------PIDGAVVLSKCDFTQP-DIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~~----------~~~~~~~~~~~D~~~~-~~~~~i  128 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+ |+.++.++-.          +-..+.++ .+|+.+. +....+
T Consensus         4 ~~k~vlVtGa-s~gIG~~~a~~l~~-------~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~-~~D~~~~~~~~~~~   74 (254)
T 1sby_A            4 TNKNVIFVAA-LGGIGLDTSRELVK-------RNLKNFVILDRVENPTALAELKAINPKVNITFH-TYDVTVPVAESKKL   74 (254)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEE-ECCTTSCHHHHHHH
T ss_pred             CCcEEEEECC-CChHHHHHHHHHHH-------CCCcEEEEEecCchHHHHHHHHHhCCCceEEEE-EEecCCChHHHHHH
Confidence            3678888886 58888888877642       1233 8888876510          01246677 8999986 433222


Q ss_pred             HHHh-C-CCCccEEEeCCCC
Q psy1489         129 VTIL-K-DDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~-~-~~~~D~V~sd~~~  146 (229)
                      .+.+ . -+.+|+++.++..
T Consensus        75 ~~~~~~~~g~id~lv~~Ag~   94 (254)
T 1sby_A           75 LKKIFDQLKTVDILINGAGI   94 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHhcCCCCEEEECCcc
Confidence            2211 0 1369999998753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=85.59  E-value=4.9  Score=32.41  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|+.+|.++-.          .-..+.++ ++|+++.+....+.+
T Consensus        31 ~gk~~lVTGas-~GIG~aia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~v~~~~~  101 (276)
T 3r1i_A           31 SGKRALITGAS-TGIGKKVALAYAE-------AGAQVAVAARHSDALQVVADEIAGVGGKALPI-RCDVTQPDQVRGMLD  101 (276)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH-------TTCEEEEEESSGGGGHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHH
Confidence            46788887865 6677777766542       23589999887511          01257788 999999765443332


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+..|+++.++..
T Consensus       102 ~~~~~~g~iD~lvnnAg~  119 (276)
T 3r1i_A          102 QMTGELGGIDIAVCNAGI  119 (276)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence            211  1369999998764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=85.57  E-value=2.8  Score=34.75  Aligned_cols=77  Identities=9%  Similarity=0.002  Sum_probs=49.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC------CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI------DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~------~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+.+||-.|++ |+++..+++.+..       ...+|++++.++-  .    .+      ..+.++ ..|+++.+....+
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~-------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~~~~~v~~~   77 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLN-------QGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV-QLDVASREGFKMA   77 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE-ECCTTCHHHHHHH
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEE-ECCCCCHHHHHHH
Confidence            36788888866 6677777766642       2358999998751  0    00      156778 8999998654433


Q ss_pred             HHHhC--CCCccEEEeCCCC
Q psy1489         129 VTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~  146 (229)
                      .+.+.  -+.+|+++.++..
T Consensus        78 ~~~~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           78 ADEVEARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHHHHHTCCEEEEEECCCC
T ss_pred             HHHHHHhCCCCCEEEECCCc
Confidence            32221  1468999998864

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=85.49  E-value=5.6  Score=31.73  Aligned_cols=113  Identities=10%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------------CCCCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|+.++.+...             .-..+.++ ..|+++.+....
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~   80 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFAL-------ESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALY-QSDLSNEEEVAK   80 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTT-------SSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEE-ECCCCSHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEE-ECCCCCHHHHHH
Confidence            46788887865 6677888877742       23578887764210             01246677 899999765444


Q ss_pred             HHHHhC--CCCccEEEeCCCCCCCC-CCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         128 LVTILK--DDKLDVVLSDMAPNATG-MREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       128 i~~~~~--~~~~D~V~sd~~~~~~g-~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.+.+.  -+..|+++.++.....+ ..+.+.  +. .++    -....++.+...++++|.++.
T Consensus        81 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~  145 (262)
T 3ksu_A           81 LFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIIT  145 (262)
T ss_dssp             HHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEE
Confidence            332211  14799999987642211 111111  11 111    112345556666777888775

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=85.41  E-value=3.8  Score=32.51  Aligned_cols=77  Identities=17%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeC-CC--CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDK-LP--IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~-~~--~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.++. ++  ..        .-..+.++ .+|+.+.+....+.
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~-------~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~   90 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGR-------RGASVVVNYGSSSKAAEEVVAELKKLGAQGVAI-QADISKPSEVVALF   90 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHH-------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEE-ECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHH-------CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEE-EecCCCHHHHHHHH
Confidence            4678887775 57788888876642       2358888887 32  10        01246677 89999976443332


Q ss_pred             HHhC--CCCccEEEeCCCC
Q psy1489         130 TILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~  146 (229)
                      +.+.  -+.+|+|+.++..
T Consensus        91 ~~~~~~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           91 DKAVSHFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHHHHHHSCEEEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            2110  1368999987754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=85.27  E-value=1.3  Score=35.62  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL  141 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~  141 (229)
                      +++||-.| + |.++..+++.+..       ...+|++++.++-...+++.++ .+|+.+.+...   ..+ .+.+|+|+
T Consensus         3 ~~~ilVtG-a-G~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~-~~Dl~d~~~~~---~~~-~~~~d~vi   68 (286)
T 3gpi_A            3 LSKILIAG-C-GDLGLELARRLTA-------QGHEVTGLRRSAQPMPAGVQTL-IADVTRPDTLA---SIV-HLRPEILV   68 (286)
T ss_dssp             CCCEEEEC-C-SHHHHHHHHHHHH-------TTCCEEEEECTTSCCCTTCCEE-ECCTTCGGGCT---TGG-GGCCSEEE
T ss_pred             CCcEEEEC-C-CHHHHHHHHHHHH-------CCCEEEEEeCCccccccCCceE-EccCCChHHHH---Hhh-cCCCCEEE
Confidence            46799899 4 8999998887642       2358999998763333578888 99999875432   223 23599999


Q ss_pred             eCCC
Q psy1489         142 SDMA  145 (229)
Q Consensus       142 sd~~  145 (229)
                      ..++
T Consensus        69 h~a~   72 (286)
T 3gpi_A           69 YCVA   72 (286)
T ss_dssp             ECHH
T ss_pred             EeCC
Confidence            8553

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=85.24  E-value=10  Score=29.30  Aligned_cols=75  Identities=19%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      ++++||-.|+ +|+++..+++.+..       ...+|+++|.++-      ....+++++ .+|+.+.+....+.+  .-
T Consensus         6 ~~~~vlVTGa-sggiG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~--~~   74 (244)
T 1cyd_A            6 SGLRALVTGA-GKGIGRDTVKALHA-------SGAKVVAVTRTNSDLVSLAKECPGIEPV-CVDLGDWDATEKALG--GI   74 (244)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHSTTCEEE-ECCTTCHHHHHHHHT--TC
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHhccCCCcE-EecCCCHHHHHHHHH--Hc
Confidence            4678887775 57788887776642       2358999988741      013467788 899999765444332  12


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      +.+|+|+.++..
T Consensus        75 ~~id~vi~~Ag~   86 (244)
T 1cyd_A           75 GPVDLLVNNAAL   86 (244)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            468999998753

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=85.00  E-value=8.2  Score=30.13  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+.+||-.| |+|+++..+++.+..       ...+|+.+|.++-  .        .-..+.++ .+|+.+.+....+.+
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~   80 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFAT-------AGASVVVSDINADAANHVVDEIQQLGGQAFAC-RCDITSEQELSALAD   80 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHT-------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHH-------CCCEEEEEcCCHHHHHHHHHHHHHhCCceEEE-EcCCCCHHHHHHHHH
Confidence            467788777 568888888887642       2358999988741  0        01356777 899999765443322


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+.+|+|+.++..
T Consensus        81 ~~~~~~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           81 FAISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHHHSSCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            111  1369999987754

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=84.97  E-value=6.1  Score=32.98  Aligned_cols=72  Identities=11%  Similarity=-0.025  Sum_probs=46.2

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------------CCCCCeEEecCCCCChhHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      ++||-.| |+|.++..+++.+..       ...+|++++.++..                ...++.++ .+|+.+.+...
T Consensus        25 ~~vlVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Dl~d~~~~~   95 (375)
T 1t2a_A           25 NVALITG-ITGQDGSYLAEFLLE-------KGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH-YGDLTDSTCLV   95 (375)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCCSSCCCTTTGGGC---------CEEEE-ECCTTCHHHHH
T ss_pred             cEEEEEC-CCchHHHHHHHHHHH-------CCCEEEEEECCccccchhhHHHHhhhhccccCCCceEE-EccCCCHHHHH
Confidence            4688776 468888888876642       23589999876421                11356788 89999976544


Q ss_pred             HHHHHhCCCCccEEEeCCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~  146 (229)
                      .+..   +..+|+|+..+..
T Consensus        96 ~~~~---~~~~d~vih~A~~  112 (375)
T 1t2a_A           96 KIIN---EVKPTEIYNLGAQ  112 (375)
T ss_dssp             HHHH---HHCCSEEEECCSC
T ss_pred             HHHH---hcCCCEEEECCCc
Confidence            3322   2258999987653

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=84.95  E-value=13  Score=29.60  Aligned_cols=77  Identities=19%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------C-CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------P-IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~-~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.+|.++-.      . -..+.++ ..|+++.+....+.+...
T Consensus        10 ~~k~vlVTGas-~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~   80 (271)
T 3tzq_B           10 ENKVAIITGAC-GGIGLETSRVLAR-------AGARVVLADLPETDLAGAAASVGRGAVHH-VVDLTNEVSVRALIDFTI   80 (271)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEECTTSCHHHHHHHHCTTCEEE-ECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHH-------CCCEEEEEcCCHHHHHHHHHHhCCCeEEE-ECCCCCHHHHHHHHHHHH
Confidence            36778877765 5667776766542       23589999987621      0 1356778 899999765443332111


Q ss_pred             --CCCccEEEeCCCC
Q psy1489         134 --DDKLDVVLSDMAP  146 (229)
Q Consensus       134 --~~~~D~V~sd~~~  146 (229)
                        -+..|+++.++..
T Consensus        81 ~~~g~id~lv~nAg~   95 (271)
T 3tzq_B           81 DTFGRLDIVDNNAAH   95 (271)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence              1368999998764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=84.92  E-value=13  Score=29.50  Aligned_cols=77  Identities=12%  Similarity=-0.008  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CC--CCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YP--IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~--~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|+.+|--|++.+ ++...+++.+..       ...+|+.+|.++-         ..  -..+.++ +.|+++.+....+
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~-------~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~   76 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQ-------LGAKLVFTYRKERSRKELEKLLEQLNQPEAHLY-QIDVQSDEEVING   76 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHH-------TTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEE-ECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEE-EccCCCHHHHHHH
Confidence            4788898897653 666666665542       2358999998751         11  1357788 8999997644333


Q ss_pred             HHHhC--CCCccEEEeCCC
Q psy1489         129 VTILK--DDKLDVVLSDMA  145 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~  145 (229)
                      .+...  -+..|+++.+..
T Consensus        77 ~~~~~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           77 FEQIGKDVGNIDGVYHSIA   95 (256)
T ss_dssp             HHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHhCCCCEEEeccc
Confidence            22111  157999998875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.83  E-value=5.3  Score=32.64  Aligned_cols=77  Identities=18%  Similarity=0.054  Sum_probs=49.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|.+||-.|++ |+++..+++.+..       ...+|+.+|.++-  .        .-..+.++ ..|+++.+....+.+
T Consensus        30 ~gk~vlVTGas-~gIG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dv~d~~~v~~~~~  100 (301)
T 3tjr_A           30 DGRAAVVTGGA-SGIGLATATEFAR-------RGARLVLSDVDQPALEQAVNGLRGQGFDAHGV-VCDVRHLDEMVRLAD  100 (301)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHH
Confidence            46788888876 5677777766542       2358999998751  0        11256778 899999765443332


Q ss_pred             HhC--CCCccEEEeCCCC
Q psy1489         131 ILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~~  146 (229)
                      .+.  -+.+|+++.++..
T Consensus       101 ~~~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A          101 EAFRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHHHSSCSEEEECCCC
T ss_pred             HHHHhCCCCCEEEECCCc
Confidence            211  1379999998764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=84.78  E-value=8.4  Score=30.30  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=49.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-------CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-------IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-------~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .+.+||-.|+ +|+++..+++.+..       ...+|+.++.++-..       -..+.++ ..|+.+.+....+.+.+.
T Consensus        11 ~~k~vlVTGa-sggiG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~   81 (265)
T 2o23_A           11 KGLVAVITGG-ASGLGLATAERLVG-------QGASAVLLDLPNSGGEAQAKKLGNNCVFA-PADVTSEKDVQTALALAK   81 (265)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEECTTSSHHHHHHHHCTTEEEE-ECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCcHhHHHHHHHhCCceEEE-EcCCCCHHHHHHHHHHHH
Confidence            4678888886 47778777776642       235899999875210       1256778 899999764433322111


Q ss_pred             --CCCccEEEeCCCC
Q psy1489         134 --DDKLDVVLSDMAP  146 (229)
Q Consensus       134 --~~~~D~V~sd~~~  146 (229)
                        -+.+|+|+.++..
T Consensus        82 ~~~g~id~li~~Ag~   96 (265)
T 2o23_A           82 GKFGRVDVAVNCAGI   96 (265)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHCCCCCEEEECCcc
Confidence              1369999998754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=84.71  E-value=0.41  Score=39.75  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             eeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CCe-EEecCCCCChhHHHHHHHHhCCC
Q psy1489          64 KVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GAV-VLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        64 ~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~~-~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      +||-.|+ |+ |..+..+++..|          .+|+++|.++- ..+     ++. ++...+...      + ..+..+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~G----------a~Vi~~~~~~~-~~~~~~~lGa~~vi~~~~~~~------~-~~~~~~  210 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLG----------YQVAAVSGRES-THGYLKSLGANRILSRDEFAE------S-RPLEKQ  210 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCGG-GHHHHHHHTCSEEEEGGGSSC------C-CSSCCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcC----------CEEEEEeCCHH-HHHHHHhcCCCEEEecCCHHH------H-HhhcCC
Confidence            4999997 55 777777887764          58999998761 110     221 220111111      0 112345


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+|+|+-..     |     .        ..+..+.+.|+++|++++.
T Consensus       211 ~~d~v~d~~-----g-----~--------~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          211 LWAGAIDTV-----G-----D--------KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CEEEEEESS-----C-----H--------HHHHHHHHTEEEEEEEEEC
T ss_pred             CccEEEECC-----C-----c--------HHHHHHHHHHhcCCEEEEE
Confidence            799988632     2     1        2456788999999999874

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=84.70  E-value=13  Score=29.37  Aligned_cols=75  Identities=15%  Similarity=0.233  Sum_probs=49.6

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHh--CCCCccE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL--KDDKLDV  139 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~--~~~~~D~  139 (229)
                      +++||-.|+ +|+++..+++.+..       ...+|+.++.++ ...+.+.++ .+|+.+.+....+.+..  .-+.+|+
T Consensus        21 ~k~vlVTGa-s~gIG~aia~~l~~-------~G~~V~~~~r~~-~~~~~~~~~-~~Dl~d~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           21 SRSVLVTGG-NRGIGLAIARAFAD-------AGDKVAITYRSG-EPPEGFLAV-KCDITDTEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEESSS-CCCTTSEEE-ECCTTSHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCEEEEeCC-CCHHHHHHHHHHHH-------CCCEEEEEeCCh-HhhccceEE-EecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            577888886 56677777766542       235888888876 344557888 99999976544332211  1246899


Q ss_pred             EEeCCCC
Q psy1489         140 VLSDMAP  146 (229)
Q Consensus       140 V~sd~~~  146 (229)
                      ++.++..
T Consensus        91 lv~nAg~   97 (253)
T 2nm0_A           91 LIANAGV   97 (253)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            9987753

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=84.51  E-value=6.2  Score=31.62  Aligned_cols=77  Identities=26%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhC-
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILK-  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~-  133 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.+|.++-      ..+.++.++ .+|+.+.+....+.+... 
T Consensus         8 ~~k~vlVTGas-~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~~~~~   78 (270)
T 1yde_A            8 AGKVVVVTGGG-RGIGAGIVRAFVN-------SGARVVICDKDESGGRALEQELPGAVFI-LCDVTQEDDVKTLVSETIR   78 (270)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHCTTEEEE-ECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhcCCeEE-EcCCCCHHHHHHHHHHHHH
Confidence            36778877754 6777777776642       2358999988741      123457788 999999765443322110 


Q ss_pred             -CCCccEEEeCCCC
Q psy1489         134 -DDKLDVVLSDMAP  146 (229)
Q Consensus       134 -~~~~D~V~sd~~~  146 (229)
                       -+.+|+++.++..
T Consensus        79 ~~g~iD~lv~nAg~   92 (270)
T 1yde_A           79 RFGRLDCVVNNAGH   92 (270)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1368999998754

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=84.49  E-value=8.7  Score=30.34  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=48.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-----------CCCCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.++.++-  .           ....+.++ ..|+++.+....
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~   76 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLAT-------DGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVL-PLDITDCTKADT   76 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHH-------HTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEE-ECCTTCHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHHhccccCcceEE-eccCCCHHHHHH
Confidence            46678877866 5566666655531       1258999988741  0           11457788 899999764443


Q ss_pred             HHHHhC--CCCccEEEeCCCC
Q psy1489         128 LVTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~~--~~~~D~V~sd~~~  146 (229)
                      +.+.+.  -+..|+++.++..
T Consensus        77 ~~~~~~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           77 EIKDIHQKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHHHHHHHCCEEEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCc
Confidence            322111  1479999998864

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=84.32  E-value=8.4  Score=31.32  Aligned_cols=71  Identities=24%  Similarity=0.321  Sum_probs=47.0

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---CC-CCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---PI-DGAVVLSKCDFTQPDIQDRLVTILKDDKLDV  139 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~~-~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~  139 (229)
                      +||-.| |+|.++..+++.+..       ...+|++++.++-.   .+ .++.++ .+|+.+.+....+.   ....+|+
T Consensus         3 ~ilVtG-atG~iG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~---~~~~~d~   70 (330)
T 2c20_A            3 SILICG-GAGYIGSHAVKKLVD-------EGLSVVVVDNLQTGHEDAITEGAKFY-NGDLRDKAFLRDVF---TQENIEA   70 (330)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCSSCCGGGSCTTSEEE-ECCTTCHHHHHHHH---HHSCEEE
T ss_pred             EEEEEC-CCcHHHHHHHHHHHh-------CCCEEEEEeCCCcCchhhcCCCcEEE-ECCCCCHHHHHHHH---hhcCCCE
Confidence            567666 478888888876642       23589999876411   12 267888 99999976544332   2236999


Q ss_pred             EEeCCCC
Q psy1489         140 VLSDMAP  146 (229)
Q Consensus       140 V~sd~~~  146 (229)
                      |+..+..
T Consensus        71 vih~a~~   77 (330)
T 2c20_A           71 VMHFAAD   77 (330)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9987653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=84.31  E-value=4.6  Score=32.05  Aligned_cols=77  Identities=17%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----C-CCCCeEEecCCCCChhHHHHHHHHh-
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----P-IDGAVVLSKCDFTQPDIQDRLVTIL-  132 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~-~~~~~~~~~~D~~~~~~~~~i~~~~-  132 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.+|.++-  .    . -..+.++ ++|+++.+....+.+.. 
T Consensus         7 ~~k~vlVTGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            7 EGKSALITGS-ARGIGRAFAEAYVR-------EGATVAIADIDIERARQAAAEIGPAAYAV-QMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHCTTEEEE-ECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhCCCceEE-EeeCCCHHHHHHHHHHHH
Confidence            4678888885 46777777776642       2358999998741  0    1 1346778 89999976444332211 


Q ss_pred             -CCCCccEEEeCCCC
Q psy1489         133 -KDDKLDVVLSDMAP  146 (229)
Q Consensus       133 -~~~~~D~V~sd~~~  146 (229)
                       .-+.+|+++.++..
T Consensus        78 ~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           78 EHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHSSSCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence             12379999998764

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=84.24  E-value=4.7  Score=33.82  Aligned_cols=72  Identities=17%  Similarity=0.007  Sum_probs=47.2

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------CC--------C-CCeEEecCCCCChhHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------PI--------D-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------~~--------~-~~~~~~~~D~~~~~~~~  126 (229)
                      .+||-.| |+|.++..+++.+..       ...+|++++.++-.       .+        + ++.++ .+|+.+.....
T Consensus        29 k~vlVtG-atG~IG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~   99 (381)
T 1n7h_A           29 KIALITG-ITGQDGSYLTEFLLG-------KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH-YADLTDASSLR   99 (381)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCCSSCCCTTTTTTC--------CCEEEE-ECCTTCHHHHH
T ss_pred             CeEEEEc-CCchHHHHHHHHHHH-------CCCEEEEEecCCccccchhhhhhhhccccccccceEEE-ECCCCCHHHHH
Confidence            4788887 468888888876642       22589999876421       11        1 67788 89999976544


Q ss_pred             HHHHHhCCCCccEEEeCCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~  146 (229)
                      .+..   +..+|+|+..+..
T Consensus       100 ~~~~---~~~~d~Vih~A~~  116 (381)
T 1n7h_A          100 RWID---VIKPDEVYNLAAQ  116 (381)
T ss_dssp             HHHH---HHCCSEEEECCSC
T ss_pred             HHHH---hcCCCEEEECCcc
Confidence            3322   2258999987653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=84.19  E-value=10  Score=29.81  Aligned_cols=77  Identities=14%  Similarity=0.059  Sum_probs=47.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC---------CCCCeEEecCCC--CChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP---------IDGAVVLSKCDF--TQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~---------~~~~~~~~~~D~--~~~~~~~~  127 (229)
                      .+++||-.|++ |+++..+++.+..       ...+|+.+|.++-  ..         -..+.++ ..|+  .+.+....
T Consensus        11 ~~k~vlVTGas-~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~   81 (252)
T 3f1l_A           11 NDRIILVTGAS-DGIGREAAMTYAR-------YGATVILLGRNEEKLRQVASHINEETGRQPQWF-ILDLLTCTSENCQQ   81 (252)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEE-ECCTTTCCHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEE-EEecccCCHHHHHH
Confidence            46788888854 6677777766542       2358999998751  10         1256778 8999  77654433


Q ss_pred             HHHHh--CCCCccEEEeCCCC
Q psy1489         128 LVTIL--KDDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~--~~~~~D~V~sd~~~  146 (229)
                      +.+.+  .-+..|+++.++..
T Consensus        82 ~~~~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           82 LAQRIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHHHHHHCSCCSEEEECCCC
T ss_pred             HHHHHHHhCCCCCEEEECCcc
Confidence            32221  12479999998764

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=84.18  E-value=14  Score=29.13  Aligned_cols=77  Identities=12%  Similarity=0.115  Sum_probs=47.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC----C-CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP----I-DGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~----~-~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .++++|-.|++ |+++..+++.+..       ...+|+.+|.++-  ..    + ..+.++ ..|+++.+....+.+...
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~   76 (257)
T 3tpc_A            6 KSRVFIVTGAS-SGLGAAVTRMLAQ-------EGATVLGLDLKPPAGEEPAAELGAAVRFR-NADVTNEADATAALAFAK   76 (257)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH-------TTCEEEEEESSCC------------CEEE-ECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEeCChHHHHHHHHHhCCceEEE-EccCCCHHHHHHHHHHHH
Confidence            46778887865 5667776766542       2358999988762  11    1 246778 899999765443332211


Q ss_pred             --CCCccEEEeCCCC
Q psy1489         134 --DDKLDVVLSDMAP  146 (229)
Q Consensus       134 --~~~~D~V~sd~~~  146 (229)
                        -+..|+++.++..
T Consensus        77 ~~~g~id~lv~nAg~   91 (257)
T 3tpc_A           77 QEFGHVHGLVNCAGT   91 (257)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence              1369999998764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=83.80  E-value=5.6  Score=33.37  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=49.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCC-cEEEEEeCCCCCC------CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPK-GLVLSVDKLPIYP------IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~-~~v~gvD~~~~~~------~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      .+++||-.|+ +|.++..+++.+..       .. .+|++++.++...      .+++.++ .+|+.+.+.   +...+.
T Consensus        31 ~~~~ilVtGa-tG~iG~~l~~~L~~-------~g~~~V~~~~r~~~~~~~~l~~~~~v~~~-~~Dl~d~~~---l~~~~~   98 (377)
T 2q1s_A           31 ANTNVMVVGG-AGFVGSNLVKRLLE-------LGVNQVHVVDNLLSAEKINVPDHPAVRFS-ETSITDDAL---LASLQD   98 (377)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TTCSEEEEECCCTTCCGGGSCCCTTEEEE-CSCTTCHHH---HHHCCS
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHH-------cCCceEEEEECCCCCchhhccCCCceEEE-ECCCCCHHH---HHHHhh
Confidence            3578887774 68888888876642       23 5899998875211      2467888 999998653   333333


Q ss_pred             CCCccEEEeCCCC
Q psy1489         134 DDKLDVVLSDMAP  146 (229)
Q Consensus       134 ~~~~D~V~sd~~~  146 (229)
                        .+|+|+..+..
T Consensus        99 --~~d~Vih~A~~  109 (377)
T 2q1s_A           99 --EYDYVFHLATY  109 (377)
T ss_dssp             --CCSEEEECCCC
T ss_pred             --CCCEEEECCCc
Confidence              68999987653

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=83.62  E-value=8.9  Score=30.33  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC------------CCCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP------------IDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~------------~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+++||-.|++. |+++..+++.+..       ...+|+.++.+....            -..+.++ +.|+.+.+....
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~-------~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~Dl~~~~~v~~   90 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAE-------MGAAVAITYASRAQGAEENVKELEKTYGIKAKAY-KCQVDSYESCEK   90 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHH-------TSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECC-BCCTTCHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHH-------CCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEE-ecCCCCHHHHHH
Confidence            467888888864 7788887776642       235888888765211            1246677 899999765443


Q ss_pred             HHHHhC--CCCccEEEeCCCC
Q psy1489         128 LVTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~~--~~~~D~V~sd~~~  146 (229)
                      +.+.+.  -+..|+++.++..
T Consensus        91 ~~~~~~~~~g~id~li~nAg~  111 (267)
T 3gdg_A           91 LVKDVVADFGQIDAFIANAGA  111 (267)
T ss_dssp             HHHHHHHHTSCCSEEEECCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCc
Confidence            332211  1478999998764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=83.24  E-value=12  Score=29.37  Aligned_cols=77  Identities=9%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----------CCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----------IDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----------~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+++||-.|+ +|+++..+++.+..       ...+|+.++.+.-..           -..+.++ .+|+.+.+....+.
T Consensus        13 ~~k~vlITGa-sggiG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~-~~Dl~~~~~~~~~~   83 (265)
T 1h5q_A           13 VNKTIIVTGG-NRGIGLAFTRAVAA-------AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAY-QCDVSNTDIVTKTI   83 (265)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHH-------TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEE-ECCTTCHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHH-------CCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEE-EeeCCCHHHHHHHH
Confidence            3677888885 57788888776642       235899998754110           1246778 89999976544332


Q ss_pred             HHhC--CCCccEEEeCCCC
Q psy1489         130 TILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~  146 (229)
                      +.+.  -+.+|+|+.++..
T Consensus        84 ~~~~~~~~~id~li~~Ag~  102 (265)
T 1h5q_A           84 QQIDADLGPISGLIANAGV  102 (265)
T ss_dssp             HHHHHHSCSEEEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCc
Confidence            2211  2469999988754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=83.20  E-value=10  Score=29.93  Aligned_cols=77  Identities=14%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--C--------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--P--------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~--------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .+.+||-.|++ |+++..+++.+..       ...+|+.+|.++-.  .        -..+.++ .+|+++.+....+.+
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~   76 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAA-------EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVAR-SLDARNEDEVTAFLN   76 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHH-------TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-ECcCCCHHHHHHHHH
Confidence            46778888866 5567777766542       23589999987511  0        1246778 899999765444332


Q ss_pred             Hh-CCCCccEEEeCCCC
Q psy1489         131 IL-KDDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~-~~~~~D~V~sd~~~  146 (229)
                      .+ ..+..|+++.++..
T Consensus        77 ~~~~~g~id~lv~nAg~   93 (252)
T 3h7a_A           77 AADAHAPLEVTIFNVGA   93 (252)
T ss_dssp             HHHHHSCEEEEEECCCC
T ss_pred             HHHhhCCceEEEECCCc
Confidence            21 11579999998764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=83.09  E-value=13  Score=29.73  Aligned_cols=77  Identities=13%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----------CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----------IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----------~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|+++|-.|++ |+++..+++.+..       ...+|+.+|.++-..          -..+.++ .+|+.+......+.+
T Consensus        32 ~gk~~lVTGas-~GIG~aia~~la~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~~~~~~~  102 (275)
T 4imr_A           32 RGRTALVTGSS-RGIGAAIAEGLAG-------AGAHVILHGVKPGSTAAVQQRIIASGGTAQEL-AGDLSEAGAGTDLIE  102 (275)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH-------TTCEEEEEESSTTTTHHHHHHHHHTTCCEEEE-ECCTTSTTHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE-EecCCCHHHHHHHHH
Confidence            46788877754 6677777766542       235899999876210          1346778 899998764443332


Q ss_pred             H-hCCCCccEEEeCCCC
Q psy1489         131 I-LKDDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~-~~~~~~D~V~sd~~~  146 (229)
                      . ...+..|+++.++..
T Consensus       103 ~~~~~g~iD~lvnnAg~  119 (275)
T 4imr_A          103 RAEAIAPVDILVINASA  119 (275)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCC
Confidence            1 112579999998764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=82.87  E-value=2.2  Score=33.66  Aligned_cols=75  Identities=21%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCCCCCeEEecCCCCChhHHHHHHHHhC-CC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPIDGAVVLSKCDFTQPDIQDRLVTILK-DD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~~-~~  135 (229)
                      +++||-.|+ +|+++..+++.+.        ..+.|+.++.++-     ....++.++ ..|+.+......+...+. -+
T Consensus         5 ~k~vlITGa-s~gIG~~~a~~l~--------~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~   74 (245)
T 3e9n_A            5 KKIAVVTGA-TGGMGIEIVKDLS--------RDHIVYALGRNPEHLAALAEIEGVEPI-ESDIVKEVLEEGGVDKLKNLD   74 (245)
T ss_dssp             -CEEEEEST-TSHHHHHHHHHHT--------TTSEEEEEESCHHHHHHHHTSTTEEEE-ECCHHHHHHTSSSCGGGTTCS
T ss_pred             CCEEEEEcC-CCHHHHHHHHHHh--------CCCeEEEEeCCHHHHHHHHhhcCCcce-ecccchHHHHHHHHHHHHhcC
Confidence            567787775 5677888888775        3468999988751     124567777 788766432111111111 14


Q ss_pred             CccEEEeCCCC
Q psy1489         136 KLDVVLSDMAP  146 (229)
Q Consensus       136 ~~D~V~sd~~~  146 (229)
                      .+|+++.++..
T Consensus        75 ~id~lv~~Ag~   85 (245)
T 3e9n_A           75 HVDTLVHAAAV   85 (245)
T ss_dssp             CCSEEEECC--
T ss_pred             CCCEEEECCCc
Confidence            68999998754

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=82.80  E-value=10  Score=31.43  Aligned_cols=76  Identities=12%  Similarity=0.063  Sum_probs=47.2

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC--------------CCCCeEEecCCCCChhHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP--------------IDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~--------------~~~~~~~~~~D~~~~~~~  125 (229)
                      +.+||-.|++ |+++..+++.+..       ...+|+.++.+.  ...              -..+.++ ..|+++.+..
T Consensus         2 ~k~vlVTGas-~GIG~ala~~L~~-------~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v   72 (327)
T 1jtv_A            2 RTVVLITGCS-SGIGLHLAVRLAS-------DPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL-QLDVRDSKSV   72 (327)
T ss_dssp             CEEEEESCCS-SHHHHHHHHHHHT-------CTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEE-ECCTTCHHHH
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHH-------CCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEE-EecCCCHHHH
Confidence            4567777775 5678888877652       113455554332  110              1346778 8999998765


Q ss_pred             HHHHHHhCCCCccEEEeCCCC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~  146 (229)
                      ..+.+.+..+.+|+++.++..
T Consensus        73 ~~~~~~~~~g~iD~lVnnAG~   93 (327)
T 1jtv_A           73 AAARERVTEGRVDVLVCNAGL   93 (327)
T ss_dssp             HHHHHTCTTSCCSEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCc
Confidence            555444444679999998854

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.76  E-value=16  Score=28.82  Aligned_cols=77  Identities=21%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             CCCeeEeecC-CCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGA-APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGc-GpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++||-.|+ |.| ++..+++.+..       ...+|+.+|.++-           ..-..+.++ .+|+.+.+....+
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~-~~Dl~~~~~v~~~   91 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALL-------EGADVVISDYHERRLGETRDQLADLGLGRVEAV-VCDVTSTEAVDAL   91 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEE-ECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHH-------CCCEEEEecCCHHHHHHHHHHHHhcCCCceEEE-EeCCCCHHHHHHH
Confidence            4678888887 343 55555555431       2358999988741           011367888 9999997654433


Q ss_pred             HHHhC--CCCccEEEeCCCC
Q psy1489         129 VTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~  146 (229)
                      .+.+.  -+.+|+++.++..
T Consensus        92 ~~~~~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           92 ITQTVEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhCCCcEEEECCCc
Confidence            32211  1368999998764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=82.63  E-value=8.7  Score=30.45  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      .+.+||-.|+ +|+++..+++.+..       ...+|+.++.++-  .       ...++.++ .+|+++.+....+.+.
T Consensus        15 ~~k~vlITGa-sggiG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~   85 (278)
T 2bgk_A           15 QDKVAIITGG-AGGIGETTAKLFVR-------YGAKVVIADIADDHGQKVCNNIGSPDVISFV-HCDVTKDEDVRNLVDT   85 (278)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHCCTTTEEEE-ECCTTCHHHHHHHHHH
T ss_pred             cCCEEEEECC-CCHHHHHHHHHHHH-------CCCEEEEEcCChhHHHHHHHHhCCCCceEEE-ECCCCCHHHHHHHHHH
Confidence            3678888885 57788887776642       2358999887641  0       11257788 9999997654433221


Q ss_pred             hC--CCCccEEEeCCCC
Q psy1489         132 LK--DDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~--~~~~D~V~sd~~~  146 (229)
                      +.  -+.+|+|+.++..
T Consensus        86 ~~~~~~~id~li~~Ag~  102 (278)
T 2bgk_A           86 TIAKHGKLDIMFGNVGV  102 (278)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCcc
Confidence            10  1368999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1ej0a_	180	c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric	1e-42
d2p41a1	257	c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-	3e-31

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

 Score =  140 bits (354), Expect = 1e-42
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 9/187 (4%)

Query: 41  YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSV 100
            R R+ FKL EI    K  +PG+ V+D GAAPG WSQ  V  +   G         +++ 
Sbjct: 2   LRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR--------IIAC 53

Query: 101 DKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT 160
           D LP+ PI G   L + DF    +   L+  + D K+ VV+SDMAPN +G   +D     
Sbjct: 54  DLLPMDPIVGVDFL-QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112

Query: 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELF 220
            L    +        PG   ++K++ G    +    I   +++VK+ KP SSR+ S E++
Sbjct: 113 YLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 172

Query: 221 LLGRGFK 227
           ++  G K
Sbjct: 173 IVATGRK 179

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

 Score =  113 bits (283), Expect = 3e-31
 Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 24/208 (11%)

Query: 23  WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
             +    +   +     +   R + KL     +   + P  KV+D G   G WS     L
Sbjct: 29  VDRTLAKEGIKRGETDHHAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL 87

Query: 83  VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL---VTILKDDKLDV 139
            N         KGL          PI  +       +    ++ +    V  +  ++ D 
Sbjct: 88  KNVRE-----VKGLTKGGP-GHEEPIPMST------YGWNLVRLQSGVDVFFIPPERCDT 135

Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
           +L D+  + +    ++        + V+     +        +K+ +      + E +  
Sbjct: 136 LLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSNNTQFCVKVLNP-YMSSVIEKMEA 189

Query: 200 FYSQVK--ILKPPSSRSHSAELFLLGRG 225
              +    +++ P SR+ + E++ +   
Sbjct: 190 LQRKHGGALVRNPLSRNSTHEMYWVSNA 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	100.0
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	99.96
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.61
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.59
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.59
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.55
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.54
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.53
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.52
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.52
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.51
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.51
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.5
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.48
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.48
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.46
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.45
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.44
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.43
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.43
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.42
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.42
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.41
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.4
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.39
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.39
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.39
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.39
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.38
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.38
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.38
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.35
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.35
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.35
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.33
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.31
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.3
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.29
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.28
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.28
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.27
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.26
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.25
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.25
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.24
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.24
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.19
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.19
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.18
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.18
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.17
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.17
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.14
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.13
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.13
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.11
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.03
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.02
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.02
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.02
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	99.01
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.97
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.95
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.92
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.92
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.88
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.88
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.77
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.73
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.73
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.68
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.68
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.63
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.59
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.54
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.53
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.51
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.4
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.3
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.3
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.29
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.27
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.27
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.19
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.1
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.06
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.04
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.03
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.01
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.01
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.82
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.81
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.65
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.65
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.57
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.53
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.51
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.5
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.49
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.38
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.37
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.23
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.21
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.07
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.02
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.93
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.89
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.85
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.81
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.61
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.52
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.26
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.2
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.97
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.94
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.83
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.79
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.74
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.73
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.31
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.19
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.86
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.33
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.28
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.61
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.6
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.4
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.17
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	91.06
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.03
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.04
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.69
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.19
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.15
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.63
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	88.01
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.56
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.56
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.16
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.16
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	86.91
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	86.54
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	86.18
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	85.62
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	85.58
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.08
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	84.82
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.74
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	83.95
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	83.72
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	83.39
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	83.03
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.77
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	81.54
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	81.01
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.69
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	80.55
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	80.5
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.38
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	80.35

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-46  Score=293.67  Aligned_cols=179  Identities=35%  Similarity=0.583  Sum_probs=171.6

Q ss_pred             CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCC
Q psy1489          40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF  119 (229)
Q Consensus        40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~  119 (229)
                      |||+|++|||.||+++|++++++.+||||||+||+|+++++++.+        ..+.|+|+|+.+|.+++++.++ ++|+
T Consensus         1 GyrsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~--------~~~~v~~vDl~~~~~i~~~~~~-~~d~   71 (180)
T d1ej0a_           1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG--------GKGRIIACDLLPMDPIVGVDFL-QGDF   71 (180)
T ss_dssp             CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC--------TTCEEEEEESSCCCCCTTEEEE-ESCT
T ss_pred             CchhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeecc--------ccceEEEeecccccccCCceEe-eccc
Confidence            799999999999999999999999999999999999999999886        6689999999999999999999 9999


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                      ++......+.......+||+|+|||+|+.+|.++.|+...++++..++..|.++|++||.||+|+|++.....+++.++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          72 RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             ccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            99888777777777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489         200 FYSQVKILKPPSSRSHSAELFLLGRGFK  227 (229)
Q Consensus       200 ~F~~v~~~kp~~sr~~s~E~Y~v~~~~~  227 (229)
                      +|..|.++||.+||++|+|+|+||+|||
T Consensus       152 ~F~~V~~~KP~aSR~~SsE~Ylv~~g~K  179 (180)
T d1ej0a_         152 LFTKVKVRKPDSSRARSREVYIVATGRK  179 (180)
T ss_dssp             HEEEEEEECCTTSCTTCCEEEEEEEEEC
T ss_pred             hcCEEEEECCCCcccCCceEEEEEecCC
Confidence            9999999999999999999999999997

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=99.96  E-value=5.1e-30  Score=206.86  Aligned_cols=164  Identities=18%  Similarity=0.205  Sum_probs=125.9

Q ss_pred             HhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC---CCCCCCC---
Q psy1489          37 KKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL---PIYPIDG---  110 (229)
Q Consensus        37 ~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~---~~~~~~~---  110 (229)
                      ...+++||+++||.++++++ +++++.+|+|||||||+|+++++.+.         +...|.|+|+-   .+.|+..   
T Consensus        43 ~~~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~---------~v~~V~g~~iG~d~~e~P~~~~~~  112 (257)
T d2p41a1          43 TDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLK---------NVREVKGLTKGGPGHEEPIPMSTY  112 (257)
T ss_dssp             CSSCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTST---------TEEEEEEECCCSTTSCCCCCCCST
T ss_pred             ccCCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhc---------CCCceeEEEecCccccCCcccccc
Confidence            33468999999999999998 67888999999999999999998764         22356666662   1233331   


Q ss_pred             ----CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         111 ----AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       111 ----~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          +.+....|+..          ++++.+|+|+|||+++ ++.+..|+.+.+    .+|..+.++|+|||.|++|+|+
T Consensus       113 ~~ni~~~~~~~dv~~----------l~~~~~D~vlcDm~es-s~~~~vd~~Rtl----~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         113 GWNLVRLQSGVDVFF----------IPPERCDTLLCDIGES-SPNPTVEAGRTL----RVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             TGGGEEEECSCCTTT----------SCCCCCSEEEECCCCC-CSSHHHHHHHHH----HHHHHHHHHCCTTCEEEEEESC
T ss_pred             ccccccchhhhhHHh----------cCCCcCCEEEeeCCCC-CCCchhhhhhHH----HHHHHHHHHcccCCEEEEEECC
Confidence                12221333333          5678999999999986 777777776654    4677889999999999999999


Q ss_pred             CC--ChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489         187 GR--NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF  226 (229)
Q Consensus       187 ~~--~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~  226 (229)
                      ..  +..+.++.|+..|....+.+| +||++++|||+||.+.
T Consensus       178 py~~~v~e~le~lq~~fgg~lVR~P-~SRnst~EmY~Vs~~~  218 (257)
T d2p41a1         178 PYMSSVIEKMEALQRKHGGALVRNP-LSRNSTHEMYWVSNAS  218 (257)
T ss_dssp             CCSHHHHHHHHHHHHHHCCEEECCT-TSCTTCCCEEEETTCC
T ss_pred             CCChHHHHHHHHHHHHhCCeeEcCC-CCccccceeEEeeccc
Confidence            54  466667888888988888877 9999999999998764

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=1.4e-16  Score=128.32  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|++|||||||+|.++..++++.           ++|+|||+|+ |.          .++++.++ ++|+.+..    
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~-----------~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~-~~d~~~~~----   77 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV-----------QECIGVDATKEMVEVASSFAQEKGVENVRFQ-QGTAESLP----   77 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-----------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEE-ECBTTBCC----
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC-----------CeEEEEeCChhhhhhhhhhhccccccccccc-cccccccc----
Confidence            6899999999999999999998763           5899999996 31          24678888 99987732    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                          +++++||+|+|..+..     ..      .....+++++.++|||||.+++..+....
T Consensus        78 ----~~~~~fD~v~~~~~l~-----~~------~d~~~~l~~~~r~LkpgG~~~~~~~~~~~  124 (234)
T d1xxla_          78 ----FPDDSFDIITCRYAAH-----HF------SDVRKAVREVARVLKQDGRFLLVDHYAPE  124 (234)
T ss_dssp             ----SCTTCEEEEEEESCGG-----GC------SCHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             ----ccccccceeeeeceee-----cc------cCHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence                5678999999966531     11      11357899999999999999886655443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=7.1e-15  Score=118.03  Aligned_cols=137  Identities=23%  Similarity=0.345  Sum_probs=93.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++||++|||||||+|.++.++++.++        +.|+|+|+|+++ |        ....++..+ ..|...+....   
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG--------~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i-~~d~~~~~~~~---  138 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVG--------WEGKIFGIEFSPRVLRELVPIVEERRNIVPI-LGDATKPEEYR---  138 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHC--------TTSEEEEEESCHHHHHHHHHHHSSCTTEEEE-ECCTTCGGGGT---
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHHhcCCceEE-EEECCCccccc---
Confidence            67999999999999999999999998        889999999997 2        234566777 78887754211   


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-----CChHH----HHHHHHhh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-----RNRPQ----LEESITRF  200 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-----~~~~~----~~~~l~~~  200 (229)
                        .....+|+|++|.+.       .+      ....++.++.++|||||.+++.++..     .....    ..+.+..-
T Consensus       139 --~~~~~vD~i~~d~~~-------~~------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~g  203 (227)
T d1g8aa_         139 --ALVPKVDVIFEDVAQ-------PT------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY  203 (227)
T ss_dssp             --TTCCCEEEEEECCCS-------TT------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT
T ss_pred             --ccccceEEEEEEccc-------cc------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcC
Confidence              224679999998753       11      23467889999999999999865431     12222    23344445


Q ss_pred             CCeeEEEc-CCCCCCCCceEEEEecc
Q psy1489         201 YSQVKILK-PPSSRSHSAELFLLGRG  225 (229)
Q Consensus       201 F~~v~~~k-p~~sr~~s~E~Y~v~~~  225 (229)
                      |..++... .+..+   ....+||++
T Consensus       204 f~iie~i~L~p~~~---~H~~vv~rK  226 (227)
T d1g8aa_         204 FEVIERLNLEPYEK---DHALFVVRK  226 (227)
T ss_dssp             SEEEEEEECTTTSS---SEEEEEEEC
T ss_pred             CEEEEEEcCCCCCC---ceEEEEEEe
Confidence            76666543 11222   235667664

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.59  E-value=3.7e-16  Score=124.95  Aligned_cols=97  Identities=19%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++++++|||||||+|.++..++++.           ++|+|+|+++ |          ...+++.+. ++|+.+.+    
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~-----------~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~-~~d~~~l~----   76 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFV-----------KKVVAFDLTEDILKVARAFIEGNGHQQVEYV-QGDAEQMP----   76 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-----------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCC-CCC----
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhC-----------CEEEEEECCHHHHhhhhhccccccccccccc-cccccccc----
Confidence            6789999999999999999988653           5899999996 2          234678898 99988732    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          +++++||+|+|.....     ..      .....++.++.++|||||.+++..+.
T Consensus        77 ----~~~~~fD~v~~~~~l~-----~~------~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          77 ----FTDERFHIVTCRIAAH-----HF------PNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             ----SCTTCEEEEEEESCGG-----GC------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ----cccccccccccccccc-----cc------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence                5678999999966431     11      12357899999999999999986544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3e-15  Score=122.62  Aligned_cols=116  Identities=20%  Similarity=0.330  Sum_probs=90.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------------CCCCCCeEEecCCCCChhH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------------YPIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------------~~~~~~~~~~~~D~~~~~~  124 (229)
                      ++||++|||+|||+|.++.+||+.++        |.|+|+++|+++ +             ....++.+. .+|+.+.  
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vg--------p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~-~~d~~~~--  162 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVG--------PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV-VSDLADS--  162 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE-CSCGGGC--
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhC--------CCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEE-ecccccc--
Confidence            57999999999999999999999998        889999999996 2             123577788 8887652  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH-h-hCC
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT-R-FYS  202 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~-~-~F~  202 (229)
                            .++++.||.|+.|++.         +       ..++..+.++|||||.+++...+..+...+.+.++ . .|.
T Consensus       163 ------~~~~~~fDaV~ldlp~---------P-------~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         163 ------ELPDGSVDRAVLDMLA---------P-------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  220 (264)
T ss_dssp             ------CCCTTCEEEEEEESSC---------G-------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             ------cccCCCcceEEEecCC---------H-------HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence                  2567899999998742         1       24677899999999999886655555667777775 3 376


Q ss_pred             eeEEE
Q psy1489         203 QVKIL  207 (229)
Q Consensus       203 ~v~~~  207 (229)
                      .++++
T Consensus       221 ~i~~~  225 (264)
T d1i9ga_         221 EPRAW  225 (264)
T ss_dssp             CCEEE
T ss_pred             cceEE
Confidence            65553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.54  E-value=2.9e-15  Score=123.75  Aligned_cols=100  Identities=20%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChh
Q psy1489          56 IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPD  123 (229)
Q Consensus        56 ~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~  123 (229)
                      ...++++.+|||+|||+|.++..++++.+          .+|+|+|+++ |.          .+ .++.++ .+|+.+..
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~-~~d~~~l~  130 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKFG----------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVK-YGSFLEIP  130 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE-ECCTTSCS
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccCC----------cEEEEEeccchhhhhhhccccccccccccccc-cccccccc
Confidence            34467899999999999999999998754          6899999997 21          12 468888 99988732


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                              +++++||+|++.....    +..       ....++.++.++|||||.|++..+
T Consensus       131 --------~~~~sfD~V~~~~~l~----h~~-------d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         131 --------CEDNSYDFIWSQDAFL----HSP-------DKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             --------SCTTCEEEEEEESCGG----GCS-------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------ccccccchhhccchhh----hcc-------CHHHHHHHHHHhcCCCcEEEEEEe
Confidence                    5678999999965431    111       134688999999999999988653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.3e-15  Score=121.89  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=76.1

Q ss_pred             hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCC
Q psy1489          52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDF  119 (229)
Q Consensus        52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~  119 (229)
                      +.+.+. +.+|++|||+|||+|.++..+++..+          ++|+|||+|+ |.          .+ +++++. .+|+
T Consensus        25 l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~----------~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~-~~d~   92 (245)
T d1nkva_          25 LGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG----------ITGTGIDMSSLFTAQAKRRAEELGVSERVHFI-HNDA   92 (245)
T ss_dssp             HHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC----------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ESCC
T ss_pred             HHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC----------CEEEEEecccchhhHHHHHHHHhhccccchhh-hhHH
Confidence            334444 57899999999999999999988743          6999999997 31          22 347888 9998


Q ss_pred             CChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+.         +++++||+|+|......    .       .....++.++.++|||||.+++..
T Consensus        93 ~~~---------~~~~~fD~v~~~~~~~~----~-------~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          93 AGY---------VANEKCDVAACVGATWI----A-------GGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             TTC---------CCSSCEEEEEEESCGGG----T-------SSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhc---------cccCceeEEEEEehhhc----c-------CCHHHHHHHHHHHcCcCcEEEEEe
Confidence            872         45789999999654311    1       112468899999999999998854

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=1.2e-14  Score=118.20  Aligned_cols=112  Identities=21%  Similarity=0.320  Sum_probs=85.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----------CCCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----------YPIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----------~~~~~~~~~~~~D~~~~~~~~  126 (229)
                      ++||++|||+|||+|.++..+|+.++        +.++|+++|.++ +           ....++++. .+|+.+.    
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~--------~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~-~~Di~~~----  149 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALN--------GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS-RSDIADF----  149 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHT--------TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE-CSCTTTC----
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEE-Eeeeecc----
Confidence            57999999999999999999999887        789999999986 2           123467888 8888762    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v  204 (229)
                           +++..||.|+.|++-         +       ..++..+.++|||||.+++......+..++.+.++.. |..+
T Consensus       150 -----~~~~~fD~V~ld~p~---------p-------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i  207 (250)
T d1yb2a1         150 -----ISDQMYDAVIADIPD---------P-------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL  207 (250)
T ss_dssp             -----CCSCCEEEEEECCSC---------G-------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred             -----cccceeeeeeecCCc---------h-------HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCcee
Confidence                 567889999998742         1       1457789999999999988654433455566666554 6444

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=7.2e-14  Score=114.93  Aligned_cols=141  Identities=16%  Similarity=0.223  Sum_probs=101.6

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..+.+|||||||+|..+..++...         |..+|+|+|+|+.           ..+.++.++ ++|+.+.      
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~---------p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~-~~d~~~~------  170 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER---------PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHIL-QSDWFSA------  170 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC---------TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE-CCSTTGG------
T ss_pred             ccccceeeeehhhhHHHHHHHhhC---------CcceeeeccchhHHHhHHHHHHHHhCcccceee-ecccccc------
Confidence            346789999999999999999876         7789999999962           134578899 9998763      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCC-----cc--c-------HHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMR-----EM--D-------HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~-----~~--d-------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                         +++.+||+|+||++.-.....     ..  +       ...-+.....++..+.++|+|||.+++++-. .....+.
T Consensus       171 ---~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-~q~~~v~  246 (274)
T d2b3ta1         171 ---LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVR  246 (274)
T ss_dssp             ---GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHH
T ss_pred             ---cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHH
Confidence               456799999999763211100     00  0       0122345567899999999999999997643 3456777


Q ss_pred             HHHHhh-CCeeEEEcCCCCCCCCceEEEEec
Q psy1489         195 ESITRF-YSQVKILKPPSSRSHSAELFLLGR  224 (229)
Q Consensus       195 ~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~  224 (229)
                      +.+... |..++++|.-+.    ...+++|+
T Consensus       247 ~~l~~~gf~~i~~~kDl~g----~~R~v~~r  273 (274)
T d2b3ta1         247 QAFILAGYHDVETCRDYGD----NERVTLGR  273 (274)
T ss_dssp             HHHHHTTCTTCCEEECTTS----SEEEEEEE
T ss_pred             HHHHHCCCCeEEEEECCCC----CceEEEEe
Confidence            777766 899999998544    44456554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.51  E-value=1e-14  Score=116.49  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=73.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      ++++.+|||||||+|..+..+++....       +..+|+|+|+|+ |.           ....+.+. .+|+.+     
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~-------~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~-~~d~~~-----  103 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEIL-CNDIRH-----  103 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCC-------SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEE-CSCTTT-----
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcC-------CCCceEEeCCCHHHHHHHHHHhHhhcccchhhhc-cchhhc-----
Confidence            578899999999999999999976421       457999999997 31           12345666 777665     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                           ++...+|+|++.....     ..    ..+....+|+++.++|||||.|++....
T Consensus       104 -----~~~~~~d~i~~~~~l~-----~~----~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         104 -----VEIKNASMVILNFTLQ-----FL----PPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             -----CCCCSEEEEEEESCGG-----GS----CGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----cccccceeeEEeeecc-----cc----ChhhHHHHHHHHHHhCCCCceeeccccc
Confidence                 4567889999865431     11    1122457899999999999999986544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=6.7e-15  Score=116.70  Aligned_cols=99  Identities=17%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++++.+|||||||+|.++..+++..           .+|+|+|+|+ |.         .-..+.++ .+|+.+..     
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~-----------~~v~giD~S~~~i~~ak~~~~~~~~~~~~~-~~d~~~l~-----   97 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYG-----------FEVVGVDISEDMIRKAREYAKSRESNVEFI-VGDARKLS-----   97 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHHHHHTTCCCEEE-ECCTTSCC-----
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhh-----------cccccccccccchhhhhhhhcccccccccc-cccccccc-----
Confidence            5678899999999999999998752           5899999996 31         11346677 78887732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                         +++++||+|+|....     +....    .....+++++.++|||||.+++....
T Consensus        98 ---~~~~~fD~I~~~~~l-----~~~~~----~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1          98 ---FEDKTFDYVIFIDSI-----VHFEP----LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             ---SCTTCEEEEEEESCG-----GGCCH----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---ccCcCceEEEEecch-----hhCCh----hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence               567899999996543     11111    23457899999999999999886643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.50  E-value=1.6e-14  Score=113.15  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=86.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC--CCeEEecCCCCChhHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID--GAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~--~~~~~~~~D~~~~~~~  125 (229)
                      ..++.+|||+|||+|.++..+++..           .+|+++|+++.           ..+.  .++++ .+|+.+.   
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~-----------~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~-~~d~~~~---  114 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEV-----------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVV-HSDLYEN---  114 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGS-----------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE-ECSTTTT---
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhc-----------cccceeeeccccchhHHHHHHHhCCccceEEEE-Ecchhhh---
Confidence            4578999999999999999988653           48999999961           1232  46777 8887652   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeE
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVK  205 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~  205 (229)
                            ++++.||+|+++.+..     ...     .....++..+.++|+|||.+++.+........+.+.++..|..++
T Consensus       115 ------~~~~~fD~Ii~~~p~~-----~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~  178 (194)
T d1dusa_         115 ------VKDRKYNKIITNPPIR-----AGK-----EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVE  178 (194)
T ss_dssp             ------CTTSCEEEEEECCCST-----TCH-----HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCE
T ss_pred             ------hccCCceEEEEcccEE-----ecc-----hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEE
Confidence                  4578999999987531     111     224567889999999999998866554445566677777787766


Q ss_pred             EE
Q psy1489         206 IL  207 (229)
Q Consensus       206 ~~  207 (229)
                      ..
T Consensus       179 ~~  180 (194)
T d1dusa_         179 TV  180 (194)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.48  E-value=5.6e-14  Score=111.38  Aligned_cols=98  Identities=21%  Similarity=0.255  Sum_probs=74.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++||++|||||||||..+.++++.+         +.++|+|+|+++ |.        ...++.++ .+|..++....   
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v---------~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i-~~d~~~~~~~~---  120 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIV---------DEGIIYAVEYSAKPFEKLLELVRERNNIIPL-LFDASKPWKYS---  120 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHT---------TTSEEEEECCCHHHHHHHHHHHHHCSSEEEE-CSCTTCGGGTT---
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhc---------cCCeEEEEeCCHHHHHHHHHHhhccCCceEE-EeeccCccccc---
Confidence            6899999999999999999999987         568999999997 21        23578888 89888754211   


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        .....+|+|+++...       .      .....++.++.++|||||.+++.+
T Consensus       121 --~~~~~vd~v~~~~~~-------~------~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         121 --GIVEKVDLIYQDIAQ-------K------NQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             --TTCCCEEEEEECCCS-------T------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --cccceEEEEEecccC-------h------hhHHHHHHHHHHHhccCCeEEEEE
Confidence              123468888887642       1      113467889999999999998765

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=6.8e-14  Score=112.45  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=81.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++||.+|||||||+|.++.++++..         +.+.|+|||+|+ |        ...+++..+ .+|...+..     
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~---------~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i-~~d~~~~~~-----  136 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIA---------DKGIVYAIEYAPRIMRELLDACAERENIIPI-LGDANKPQE-----  136 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHT---------TTSEEEEEESCHHHHHHHHHHTTTCTTEEEE-ECCTTCGGG-----
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhC---------CCCEEEEEeCcHHHHHHHHHHHhhhcccceE-EEeeccCcc-----
Confidence            6799999999999999999999875         678999999997 2        234567777 788877532     


Q ss_pred             HHhCCCC--ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-----CC----hHHHHHHHH
Q psy1489         130 TILKDDK--LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-----RN----RPQLEESIT  198 (229)
Q Consensus       130 ~~~~~~~--~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-----~~----~~~~~~~l~  198 (229)
                        ..+..  +|+++++...       .+      ....++.++.++|||||.+++.+...     ..    ..+..+.|+
T Consensus       137 --~~~~~~~v~~i~~~~~~-------~~------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~  201 (230)
T d1g8sa_         137 --YANIVEKVDVIYEDVAQ-------PN------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILE  201 (230)
T ss_dssp             --GTTTCCCEEEEEECCCS-------TT------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHH
T ss_pred             --cccccceeEEeeccccc-------hH------HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHH
Confidence              22333  4555564431       11      23567889999999999998765321     11    344445665


Q ss_pred             hh-CCeeEEE
Q psy1489         199 RF-YSQVKIL  207 (229)
Q Consensus       199 ~~-F~~v~~~  207 (229)
                      .. |+.++..
T Consensus       202 ~aGF~ive~i  211 (230)
T d1g8sa_         202 AGGFKIVDEV  211 (230)
T ss_dssp             HHTEEEEEEE
T ss_pred             HcCCEEEEEe
Confidence            54 7666554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.46  E-value=1.3e-14  Score=112.94  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +++|++|||+|||+|.++..+++..           ++|+|+|+++ +          ..+ ++++++ ++|+.+.    
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~-----------~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~-~gda~~~----   94 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRV-----------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM-EGDAPEA----   94 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-----------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE-ESCHHHH----
T ss_pred             CCCCCEEEEEECCeEcccccccccc-----------eEEEEecCCHHHHHHHHHHHHHcCCCcceEEE-ECchhhc----
Confidence            5789999999999999999988642           5999999996 2          123 478888 8885442    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI  206 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~  206 (229)
                          ..+...||+|+++...     .   +      ....+..+.++|||||++++......+...+.+.++.+...+.+
T Consensus        95 ----~~~~~~~D~v~~~~~~-----~---~------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~  156 (186)
T d1l3ia_          95 ----LCKIPDIDIAVVGGSG-----G---E------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI  156 (186)
T ss_dssp             ----HTTSCCEEEEEESCCT-----T---C------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred             ----ccccCCcCEEEEeCcc-----c---c------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEE
Confidence                2445789999997642     1   1      23567889999999999988665444556666777776444443


Q ss_pred             E
Q psy1489         207 L  207 (229)
Q Consensus       207 ~  207 (229)
                      .
T Consensus       157 ~  157 (186)
T d1l3ia_         157 T  157 (186)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.8e-14  Score=118.45  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=78.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      ..++.+|||+|||+|.++..+++..         +...++|+|+++ |.     ..+++.+. ++|+.+..        +
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~---------~~~~~~giD~s~~~~~~a~~~~~~~~~~-~~d~~~l~--------~  143 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADAL---------PEITTFGLDVSKVAIKAAAKRYPQVTFC-VASSHRLP--------F  143 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTC---------TTSEEEEEESCHHHHHHHHHHCTTSEEE-ECCTTSCS--------B
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHC---------CCCEEEEecchHhhhhhhhcccccccce-eeehhhcc--------C
Confidence            3467899999999999999999875         567999999997 31     34688998 99998843        6


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE  194 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~  194 (229)
                      +++.||+|++...+.                  .+.++.|+|||||.|++.+.......++.
T Consensus       144 ~~~sfD~v~~~~~~~------------------~~~e~~rvLkpgG~l~~~~p~~~~l~el~  187 (268)
T d1p91a_         144 SDTSMDAIIRIYAPC------------------KAEELARVVKPGGWVITATPGPRHLMELK  187 (268)
T ss_dssp             CTTCEEEEEEESCCC------------------CHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred             CCCCEEEEeecCCHH------------------HHHHHHHHhCCCcEEEEEeeCCcchHHHH
Confidence            688999999966541                  13568899999999999887655544443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=1.5e-13  Score=112.00  Aligned_cols=112  Identities=26%  Similarity=0.367  Sum_probs=79.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------CC--CCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------ID--GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~~--~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++|++|||+|||+|.++..+++. +          .+|+|+|+++ +..       ..  ...++ ++|+.        
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~-g----------~~V~gvDis~~av~~A~~na~~n~~~~~~~-~~d~~--------  177 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL-G----------GKALGVDIDPMVLPQAEANAKRNGVRPRFL-EGSLE--------  177 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T----------CEEEEEESCGGGHHHHHHHHHHTTCCCEEE-ESCHH--------
T ss_pred             cCccCEEEEcccchhHHHHHHHhc-C----------CEEEEEECChHHHHHHHHHHHHcCCceeEE-ecccc--------
Confidence            468999999999999999887653 3          5899999998 210       11  34566 66643        


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVK  205 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~  205 (229)
                       ..++.++||+|+++...              ......+..+.++|||||++++.-+...+...+.+.++.. |..+.
T Consensus       178 -~~~~~~~fD~V~ani~~--------------~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         178 -AALPFGPFDLLVANLYA--------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             -HHGGGCCEEEEEEECCH--------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred             -ccccccccchhhhcccc--------------ccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEE
Confidence             23556799999997532              1234567788999999999998755455567777777776 54444

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.44  E-value=2.4e-14  Score=115.71  Aligned_cols=96  Identities=11%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ++.+|||+|||+|.++..++++.           .+|+|+|+|+ |.         .-.++.++ ++|+.+..       
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g-----------~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~-~~d~~~~~-------   97 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF-----------KNTWAVDLSQEMLSEAENKFRSQGLKPRLA-CQDISNLN-------   97 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS-----------SEEEEECSCHHHHHHHHHHHHHTTCCCEEE-CCCGGGCC-------
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC-----------CccEeeccchhhhhhccccccccCccceee-ccchhhhc-------
Confidence            46799999999999999998753           4899999997 31         12358888 99987631       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                        .+++||+|+|-...       ..+....+....+++.+.++|+|||.|++.+
T Consensus        98 --~~~~fD~i~~~~~~-------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_          98 --INRKFDLITCCLDS-------TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             --CSCCEEEEEECTTG-------GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --ccccccccceeeee-------eeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence              25689999983311       1122223445678999999999999999754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=8.3e-14  Score=112.37  Aligned_cols=96  Identities=15%  Similarity=0.043  Sum_probs=70.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..++.+|||+|||+|.++..+++. +          .+|+|||+|+ |..         -.++.++ ++|+++..     
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~-~----------~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~-~~d~~~l~-----  101 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAER-G----------YEVVGLDLHEEMLRVARRKAKERNLKIEFL-QGDVLEIA-----  101 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHTTCCCEEE-ESCGGGCC-----
T ss_pred             CCCCCEEEEeCCCCCccchhhccc-c----------eEEEEEeeccccccccccccccccccchhe-ehhhhhcc-----
Confidence            456689999999999999998875 2          5899999997 421         1257888 99987732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                         + +++||+|+|....       ..+. ..+....+|+.+.++|||||.|++.
T Consensus       102 ---~-~~~fD~I~~~~~~-------~~~~-~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         102 ---F-KNEFDAVTMFFST-------IMYF-DEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             ---C-CSCEEEEEECSSG-------GGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---c-ccccchHhhhhhh-------hhcC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence               2 4689999984321       1111 1123457899999999999999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.5e-14  Score=117.83  Aligned_cols=118  Identities=23%  Similarity=0.229  Sum_probs=84.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------------------CCCCCeEEec
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------------PIDGAVVLSK  116 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------------~~~~~~~~~~  116 (229)
                      ++||++|||+|||+|.++.+||+.++        +.|+|+++|+++ +.                     ...++.+. .
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg--------~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~-~  166 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVG--------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI-H  166 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE-E
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhC--------CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE-e
Confidence            57999999999999999999999998        889999999985 10                     12367788 8


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES  196 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~  196 (229)
                      +|+.+..      ..+++..||.|+.|++.         +       ..++..+.++|||||.|++.+.+-......++.
T Consensus       167 ~di~~~~------~~~~~~~fD~V~LD~p~---------P-------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~  224 (324)
T d2b25a1         167 KDISGAT------EDIKSLTFDAVALDMLN---------P-------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDG  224 (324)
T ss_dssp             SCTTCCC-------------EEEEEECSSS---------T-------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             cchhhcc------cccCCCCcceEeecCcC---------H-------HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHH
Confidence            8887632      11346689999999852         1       135778999999999999865444445566666


Q ss_pred             HHhh---CCeeEEE
Q psy1489         197 ITRF---YSQVKIL  207 (229)
Q Consensus       197 l~~~---F~~v~~~  207 (229)
                      |+..   |..++++
T Consensus       225 l~~~~~~f~~i~~~  238 (324)
T d2b25a1         225 IRTCELALSCEKIS  238 (324)
T ss_dssp             HHHHTCCEEEEEEE
T ss_pred             HHHcCCCceeeEEE
Confidence            6542   6666554

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=110.03  Aligned_cols=121  Identities=17%  Similarity=0.095  Sum_probs=84.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .++.+|||||||+|.++..++...          ..+|+|||+|+ |.          ...+++++ ++|+.+..     
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~----------~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~-~~d~~~~~-----  122 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL----------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYF-CCGLQDFT-----  122 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT----------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEE-ECCGGGCC-----
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc----------CCEEEEeecCHHHhhccccccccccccccccc-cccccccc-----
Confidence            467899999999999999877553          25899999997 31          12356788 88887632     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC--------------ChHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR--------------NRPQLE  194 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~--------------~~~~~~  194 (229)
                         +++++||+|++.....     ....    .....++..+.++|+|||.+++......              ....+.
T Consensus       123 ---~~~~~fD~I~~~~~l~-----h~~~----~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (222)
T d2ex4a1         123 ---PEPDSYDVIWIQWVIG-----HLTD----QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR  190 (222)
T ss_dssp             ---CCSSCEEEEEEESCGG-----GSCH----HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHH
T ss_pred             ---cccccccccccccccc-----cchh----hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHH
Confidence               4568999999966431     1111    2245788999999999999998643211              246677


Q ss_pred             HHHHhh-CCeeEEEc
Q psy1489         195 ESITRF-YSQVKILK  208 (229)
Q Consensus       195 ~~l~~~-F~~v~~~k  208 (229)
                      +.+.+. |..+...+
T Consensus       191 ~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         191 RIICSAGLSLLAEER  205 (222)
T ss_dssp             HHHHHTTCCEEEEEE
T ss_pred             HHHHHcCCEEEEEEE
Confidence            777665 76665554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=6.5e-14  Score=114.88  Aligned_cols=116  Identities=13%  Similarity=0.237  Sum_probs=86.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +++|++|||+|||+|+++.++|+.++        +.++|+++|+++ +.          .+ .++.+. ..|+..     
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~--------~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~-~~d~~~-----  166 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVG--------SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK-VRDISE-----  166 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTT--------TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE-CCCGGG-----
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhC--------CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEE-eccccc-----
Confidence            57999999999999999999999887        789999999997 21          11 345555 666433     


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeE
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVK  205 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~  205 (229)
                          .++...||.|+.|++.                ...++..+.++|||||.+++.........++.+.++.. |..++
T Consensus       167 ----~~~~~~~D~V~~d~p~----------------p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         167 ----GFDEKDVDALFLDVPD----------------PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  226 (266)
T ss_dssp             ----CCSCCSEEEEEECCSC----------------GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             ----cccccceeeeEecCCC----------------HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEE
Confidence                2556789999998742                12467889999999999998665545556677777664 76666


Q ss_pred             EEc
Q psy1489         206 ILK  208 (229)
Q Consensus       206 ~~k  208 (229)
                      ++.
T Consensus       227 ~~E  229 (266)
T d1o54a_         227 VWE  229 (266)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            553

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=4.3e-14  Score=113.33  Aligned_cols=97  Identities=15%  Similarity=0.082  Sum_probs=70.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----IDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ++++.+|||+|||+|.++..+++. +          .+|+|+|+|+ |..    .....++ .+|+.+..        ++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~giD~s~~~l~~a~~~~~~~~~-~~~~~~l~--------~~   99 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER-G----------FEVVLVDPSKEMLEVAREKGVKNVV-EAKAEDLP--------FP   99 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT-T----------CEEEEEESCHHHHHHHHHHTCSCEE-ECCTTSCC--------SC
T ss_pred             cCCCCEEEEECCCCchhccccccc-c----------eEEEEeecccccccccccccccccc-cccccccc--------cc
Confidence            457789999999999999999875 2          5999999997 311    0112355 77877732        56


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      +++||+|+|...          .+..+.....+|+++.++|||||.+++.+.
T Consensus       100 ~~~fD~ii~~~~----------~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         100 SGAFEAVLALGD----------VLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             TTCEEEEEECSS----------HHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccceeeecc----------hhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            789999998432          112222345688999999999999998764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=2.9e-13  Score=112.29  Aligned_cols=113  Identities=17%  Similarity=0.034  Sum_probs=75.9

Q ss_pred             hHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEec
Q psy1489          49 LLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSK  116 (229)
Q Consensus        49 l~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~  116 (229)
                      +..+.++.+ +++|++|||||||.|+++.+++++.+          ++|+|+++|+-           ..+. .+.+. .
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g----------~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~-~  117 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD----------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR-I  117 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEE-E
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC----------cceeeccchHHHHHHHHHHHHhhccchhhhhh-h
Confidence            334445555 68999999999999999999998875          69999999961           1122 34444 4


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .|..           ..+++||.|+|-.+....+.....  ...+.....++.+.++|||||++++.++.
T Consensus       118 ~d~~-----------~~~~~fD~i~sie~~eH~~~~~~~--~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         118 QGWE-----------EFDEPVDRIVSLGAFEHFADGAGD--AGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CCGG-----------GCCCCCSEEEEESCGGGTTCCSSC--CSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             hccc-----------ccccccceEeechhHHhcchhhhh--hHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            4432           346789999997654221111000  00012346789999999999999987654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=7.1e-13  Score=109.64  Aligned_cols=104  Identities=21%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             hhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------------CCCCCCeEEecCC
Q psy1489          51 EIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------------YPIDGAVVLSKCD  118 (229)
Q Consensus        51 ~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------------~~~~~~~~~~~~D  118 (229)
                      .+.++.. +++|++|||||||.|+.+.++++..+          ++|+|+++|+.            .....+.+. .+|
T Consensus        53 ~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g----------~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~-~~d  120 (285)
T d1kpga_          53 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD----------VNVVGLTLSKNQANHVQQLVANSENLRSKRVL-LAG  120 (285)
T ss_dssp             HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE-ESC
T ss_pred             HHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC----------cceEEEeccHHHHHHHHHHHHhhhhhhhhHHH-Hhh
Confidence            3444555 68999999999999999999999875          79999999961            012456677 777


Q ss_pred             CCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ..+          + +++||.|+|-.+....+..         .....++.+.++|||||++++..+.
T Consensus       121 ~~~----------~-~~~fD~i~si~~~eh~~~~---------~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         121 WEQ----------F-DEPVDRIVSIGAFEHFGHE---------RYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             GGG----------C-CCCCSEEEEESCGGGTCTT---------THHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhc----------c-cccccceeeehhhhhcCch---------hHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            654          3 4689999996554222211         1246789999999999999986543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=6e-13  Score=109.87  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             hHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEec
Q psy1489          49 LLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLSK  116 (229)
Q Consensus        49 l~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~~  116 (229)
                      +..+.++.. +++|++|||+|||+|+++.+++++.+          ++|+|+|+|+ +          ..+. .+.+. .
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g----------~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~-~  108 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD----------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVL-L  108 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC----------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE-E
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc----------eeEEEecchHHHHHHHHHHHHhhccccchhhh-h
Confidence            334444555 68999999999999999999998864          6999999996 1          1122 34444 4


Q ss_pred             CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .|..+          + +++||.|+|-.+....+.         ......++.+.++|||||.+++..
T Consensus       109 ~d~~~----------~-~~~fD~i~si~~~eh~~~---------~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         109 QGWED----------F-AEPVDRIVSIEAFEHFGH---------ENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SCGGG----------C-CCCCSEEEEESCGGGTCG---------GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhh----------h-ccchhhhhHhhHHHHhhh---------hhHHHHHHHHHhccCCCceEEEEE
Confidence            55433          2 568999999654321111         113467889999999999999864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.39  E-value=2.9e-13  Score=109.77  Aligned_cols=103  Identities=16%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~~~~~~~~  126 (229)
                      .+++.+|||||||+|+.+..+++.          +.++|+|+|+|+ |.           ...++.++ ++|+....   
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~----------~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~-~~D~~~~~---   87 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA----------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFR-AQDSYGRH---   87 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH----------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEE-ESCTTTSC---
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc----------CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEE-Ecchhhhc---
Confidence            568899999999999999988875          346899999997 31           11257788 89986531   


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                          ...++.||+|+|..+..    +..   ...+....++.++.++|||||.|++.+..
T Consensus        88 ----~~~~~~fD~V~~~~~l~----~~~---~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          88 ----MDLGKEFDVISSQFSFH----YAF---STSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             ----CCCSSCEEEEEEESCGG----GGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ----ccccccceEEEEcceee----ecC---CCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence                12356899999966431    111   11234567899999999999999986654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.39  E-value=2.9e-13  Score=106.76  Aligned_cols=106  Identities=10%  Similarity=0.103  Sum_probs=76.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++-.|||||||+|.++..+|+..         |+..++|+|+++ +          ..+.++.++ .+|+.+      +.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~---------p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~-~~Da~~------l~   92 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQN---------PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLL-NIDADT------LT   92 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHC---------TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEE-CCCGGG------HH
T ss_pred             CCceEEEEEecCcHHHHHHHHhC---------CCCcEEEeecchHHHHHHHHHHHHHhccCchhc-ccchhh------hh
Confidence            34589999999999999999986         788999999986 1          246789999 999876      34


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      ..++++.+|.|+...+.-..  + ..+....-.....+.++.++|||||.|.+.+.
T Consensus        93 ~~~~~~~~d~v~i~fp~P~~--k-~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1          93 DVFEPGEVKRVYLNFSDPWP--K-KRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             HHCCTTSCCEEEEESCCCCC--S-GGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             cccCchhhhccccccccccc--h-hhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            55788999999876542111  1 01110000123678889999999999988653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.38  E-value=1.8e-13  Score=107.09  Aligned_cols=98  Identities=26%  Similarity=0.222  Sum_probs=72.1

Q ss_pred             CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHH
Q psy1489          57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~  125 (229)
                      ..+++| +|||||||+|..+..++++.           .+|+|+|+++ |.          .++++++. ..|+.+.   
T Consensus        27 ~~~~~g-rvLDiGcG~G~~~~~la~~g-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~d~~~~---   90 (198)
T d2i6ga1          27 KVVAPG-RTLDLGCGNGRNSLYLAANG-----------YDVTAWDKNPASMANLERIKAAEGLDNLQTD-LVDLNTL---   90 (198)
T ss_dssp             TTSCSC-EEEEETCTTSHHHHHHHHTT-----------CEEEEEESCHHHHHHHHHHHHHTTCTTEEEE-ECCTTTC---
T ss_pred             ccCCCC-cEEEECCCCCHHHHHHHHHh-----------hhhccccCcHHHHHHHHHHhhhccccchhhh-heecccc---
Confidence            335554 99999999999999999763           5899999997 21          24567777 8887763   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                            ..+++||+|++......     .+.    ......+..+.++|+|||.+++..+
T Consensus        91 ------~~~~~fD~I~~~~~~~~-----~~~----~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          91 ------TFDGEYDFILSTVVMMF-----LEA----QTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ------CCCCCEEEEEEESCGGG-----SCT----THHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ------cccccccEEEEeeeeec-----CCH----HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                  23678999999765421     111    1235688899999999999988654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-13  Score=108.49  Aligned_cols=115  Identities=10%  Similarity=-0.008  Sum_probs=79.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C--------------------CCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P--------------------IDG  110 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~--------------------~~~  110 (229)
                      ..++.+|||+|||+|..+.+|+++ |          .+|+|||+|+ +.       .                    -.+
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~-G----------~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR-G----------HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT-T----------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC-C----------CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            567899999999999999999975 3          5999999997 10       0                    024


Q ss_pred             CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---
Q psy1489         111 AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---  187 (229)
Q Consensus       111 ~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---  187 (229)
                      +.+. ++|+.+..       ......||+|+.......  +..       ......+..+.++|||||++++..+..   
T Consensus       112 v~~~-~~d~~~l~-------~~~~~~fd~i~~~~~l~~--~~~-------~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~  174 (229)
T d2bzga1         112 ISLY-CCSIFDLP-------RTNIGKFDMIWDRGALVA--INP-------GDRKCYADTMFSLLGKKFQYLLCVLSYDPT  174 (229)
T ss_dssp             EEEE-ESCGGGGG-------GSCCCCEEEEEESSSTTT--SCG-------GGHHHHHHHHHHTEEEEEEEEEEEEECCTT
T ss_pred             EEEE-Ecchhhcc-------ccccCceeEEEEEEEEEe--ccc-------hhhHHHHHHHHhhcCCcceEEEEEcccCCC
Confidence            5667 77776532       134578999998665421  111       123467888999999999988766432   


Q ss_pred             --------CChHHHHHHHHhhC
Q psy1489         188 --------RNRPQLEESITRFY  201 (229)
Q Consensus       188 --------~~~~~~~~~l~~~F  201 (229)
                              ....++.+.+...|
T Consensus       175 ~~~gpp~~~~~~el~~lf~~~~  196 (229)
T d2bzga1         175 KHPGPPFYVPHAEIERLFGKIC  196 (229)
T ss_dssp             TCCCSSCCCCHHHHHHHHTTTE
T ss_pred             CCCCCCCCCCHHHHHHHhcCCC
Confidence                    12455666666555

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=9.5e-14  Score=109.19  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=81.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      .++.+|||||||+|.++..++               +++|||+|+ |.   .-.++.++ ++|+.+..        ++++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~---------------~~~giD~s~~~~~~a~~~~~~~~-~~d~~~l~--------~~~~   90 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK---------------IKIGVEPSERMAEIARKRGVFVL-KGTAENLP--------LKDE   90 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT---------------CCEEEESCHHHHHHHHHTTCEEE-ECBTTBCC--------SCTT
T ss_pred             CCCCeEEEECCCCcccccccc---------------eEEEEeCChhhcccccccccccc-cccccccc--------cccc
Confidence            456799999999999876542               468999997 32   22468888 99988742        5578


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-----------------------ChHH
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-----------------------NRPQ  192 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-----------------------~~~~  192 (229)
                      +||+|++.....        +.   .....++.++.++|+|||.+++......                       ...+
T Consensus        91 ~fD~I~~~~~l~--------h~---~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  159 (208)
T d1vlma_          91 SFDFALMVTTIC--------FV---DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEE  159 (208)
T ss_dssp             CEEEEEEESCGG--------GS---SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHH
T ss_pred             cccccccccccc--------cc---cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHH
Confidence            999999966531        11   1234678999999999999988764211                       2466


Q ss_pred             HHHHHHhh-CCeeEEEc
Q psy1489         193 LEESITRF-YSQVKILK  208 (229)
Q Consensus       193 ~~~~l~~~-F~~v~~~k  208 (229)
                      +...|++. |..+++..
T Consensus       160 l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         160 LMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             HHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHcCCeEEEEEE
Confidence            77777776 77676553

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.35  E-value=2.2e-13  Score=105.29  Aligned_cols=100  Identities=11%  Similarity=0.004  Sum_probs=71.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C---------------CCCCeEEe
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P---------------IDGAVVLS  115 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~---------------~~~~~~~~  115 (229)
                      +++|.+|||+|||+|..+.+||++ |          .+|+|+|+|+ |.       .               -....++ 
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~-G----------~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-   85 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ-G----------YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW-   85 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH-C----------CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE-
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc-C----------CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee-
Confidence            578999999999999999999986 3          6999999996 21       0               1234567 


Q ss_pred             cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ++|+.+....       ....||+|++.....         ..........++.+.++|||||.+++..+.
T Consensus        86 ~~d~~~l~~~-------~~~~~D~i~~~~~l~---------~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          86 CGDFFALTAR-------DIGHCAAFYDRAAMI---------ALPADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             EECCSSSTHH-------HHHSEEEEEEESCGG---------GSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             cccccccccc-------cccceeEEEEEeeeE---------ecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            7888774321       134799999865431         111123456888899999999998876543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.2e-13  Score=109.68  Aligned_cols=92  Identities=26%  Similarity=0.358  Sum_probs=70.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|++|||+|||+|.++..+++.++        +.++|+++|+++ +          ..+.++.++ .+|..+.     
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~--------~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~-~~d~~~~-----  138 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVG--------EKGLVVSVEYSRKICEIAKRNVERLGIENVIFV-CGDGYYG-----  138 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHC--------TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ESCGGGC-----
T ss_pred             ccccceEEEecCccchhHHHHHHHhC--------CCCcEEEeecchhhHHHhhhhHhhhcccccccc-cCchHHc-----
Confidence            68999999999999999999999987        778999999996 2          135677777 7876542     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         ...+++||+|+++++..     ...            ..+.+.|||||++++-+
T Consensus       139 ---~~~~~~fD~I~~~~~~~-----~~p------------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         139 ---VPEFSPYDVIFVTVGVD-----EVP------------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             ---CGGGCCEEEEEECSBBS-----CCC------------HHHHHHEEEEEEEEEEB
T ss_pred             ---cccccchhhhhhhccHH-----HhH------------HHHHHhcCCCcEEEEEE
Confidence               13356899999987541     111            12456799999998855

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.35  E-value=3.6e-12  Score=103.40  Aligned_cols=102  Identities=19%  Similarity=0.250  Sum_probs=75.0

Q ss_pred             hhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------C-CCCCeEEecCCCCC
Q psy1489          53 DSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------P-IDGAVVLSKCDFTQ  121 (229)
Q Consensus        53 ~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~-~~~~~~~~~~D~~~  121 (229)
                      ...+. +....+|||||||+|.++..++++.         |..+++++|+.++.          . ..++.++ .+|+.+
T Consensus        73 ~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~---------p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~-~~D~~~  141 (253)
T d1tw3a2          73 AAAYD-WTNVRHVLDVGGGKGGFAAAIARRA---------PHVSATVLEMAGTVDTARSYLKDEGLSDRVDVV-EGDFFE  141 (253)
T ss_dssp             HHHSC-CTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEE-ECCTTS
T ss_pred             HhhcC-CccCCEEEEeCCCCCHHHHHHHHhc---------ceeEEEEccCHHHHHHHHHHHHHhhcccchhhc-cccchh
Confidence            33444 4567899999999999999999986         67899999986531          1 2467888 899876


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .         . ...||+|++....     +.++.    +.+..+|+++.++|||||++++..
T Consensus       142 ~---------~-~~~~D~v~~~~vl-----h~~~d----~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         142 P---------L-PRKADAIILSFVL-----LNWPD----HDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             C---------C-SSCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             h---------c-ccchhheeecccc-----ccCCc----hhhHHHHHHHHHhcCCCcEEEEEe
Confidence            2         2 3579999985532     22222    334578999999999999998754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-13  Score=110.24  Aligned_cols=100  Identities=17%  Similarity=0.146  Sum_probs=69.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+|.+|||+|||+|.++..+++..          ..+|+|||+++ +.         ....+..+ ..|..+      +.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~----------~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~------~~  114 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP----------IDEHWIIECNDGVFQRLRDWAPRQTHKVIPL-KGLWED------VA  114 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC----------EEEEEEEECCHHHHHHHHHHGGGCSSEEEEE-ESCHHH------HG
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC----------CCeEEEeCCCHHHHHHHHHHhhhcccccccc-cccccc------cc
Confidence            578999999999999999988753          25899999997 21         11234444 444322      23


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ..+++++||.|+.|......      ..........+++++.++|||||.|++
T Consensus       115 ~~~~~~~fD~i~fD~~~~~~------~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         115 PTLPDGHFDGILYDTYPLSE------ETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             GGSCTTCEEEEEECCCCCBG------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cccccccccceeeccccccc------ccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            34677899999998754221      112223455788999999999999976

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.31  E-value=5.1e-13  Score=110.23  Aligned_cols=97  Identities=16%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +.++.+|||+|||+|.++..+++..+        ..++|+|+|+++ +.        . -.++.+. .+|+.+..     
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~--------~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~-~~d~~~~~-----   90 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLP--------EGSKYTGIDSGETLLAEARELFRLLPYDSEFL-EGDATEIE-----   90 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSC--------TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEE-ESCTTTCC-----
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCC--------CCCEEEEEecchhHhhhhhccccccccccccc-cccccccc-----
Confidence            45668999999999999999988764        346899999996 21        1 1257788 89988732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                         + +++||+|++.....    + .      .....+++++.++|||||.+++..
T Consensus        91 ---~-~~~fD~v~~~~~l~----~-~------~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          91 ---L-NDKYDIAICHAFLL----H-M------TTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ---C-SSCEEEEEEESCGG----G-C------SSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---c-cCCceEEEEehhhh----c-C------CCHHHHHHHHHHHcCcCcEEEEEE
Confidence               3 45799999976431    1 1      113468899999999999998754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.5e-11  Score=100.10  Aligned_cols=148  Identities=18%  Similarity=0.221  Sum_probs=96.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|.+|||+|+|||+.+.++++..         .++.|+++|+++-.           ...++... ..|....     
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~---------~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~-~~~~~~~-----  164 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVA---------PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQ-GDGRYPS-----  164 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC---------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEE-CCTTCTH-----
T ss_pred             ccccceeEeccCccccchhhhhhhh---------hhhhhhhhhcchhhhhhHhhhhhcccccceeee-ccccccc-----
Confidence            4678999999999999999999864         45899999999721           12333333 3433321     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~~~~  193 (229)
                        .......||.|+.|+++..+|....           +......++..+|..|.++|||||.+|-.+-+   .++...+
T Consensus       165 --~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv  242 (284)
T d1sqga2         165 --QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQI  242 (284)
T ss_dssp             --HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             --hhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHH
Confidence              1234578999999999876664321           12234556778999999999999999855422   3343444


Q ss_pred             HHHHHhhCCeeEEEcCCCC---------CCCCceEEEEec
Q psy1489         194 EESITRFYSQVKILKPPSS---------RSHSAELFLLGR  224 (229)
Q Consensus       194 ~~~l~~~F~~v~~~kp~~s---------r~~s~E~Y~v~~  224 (229)
                      .+.+++ +..+++..+...         ..+..+.+|||+
T Consensus       243 ~~~l~~-~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~  281 (284)
T d1sqga2         243 KAFLQR-TADAELCETGTPEQPGKQNLPGAEEGDGFFYAK  281 (284)
T ss_dssp             HHHHHH-CTTCEECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred             HHHHHh-CCCcEEecCCCCCCCcEEECCCCCCcccEEEEE
Confidence            455555 444555443211         134456677776

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.29  E-value=4.2e-13  Score=107.05  Aligned_cols=92  Identities=12%  Similarity=0.180  Sum_probs=66.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY------PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~------~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      ++.+|||||||+|.++..+++..           .+|+|+|+++ +.      ...++.++ .+|+.+.         ..
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g-----------~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~~~~~---------~~   78 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF-----------NDITCVEASEEAISHAQGRLKDGITYI-HSRFEDA---------QL   78 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC-----------SCEEEEESCHHHHHHHHHHSCSCEEEE-ESCGGGC---------CC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC-----------CeEEEEeCcHHHhhhhhcccccccccc-ccccccc---------cc
Confidence            46799999999999999887652           4899999997 21      12367788 8876652         23


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH-HcccCCCEEEEee
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAV-TYSKPGADCLIKI  184 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~-~~LkpgG~~v~~~  184 (229)
                      +++||+|++....        +|   +.....++.++. ++|+|||.+++.+
T Consensus        79 ~~~fD~I~~~~vl--------eh---~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          79 PRRYDNIVLTHVL--------EH---IDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             SSCEEEEEEESCG--------GG---CSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccccccccccee--------Ee---cCCHHHHHHHHHHHhcCCCceEEEEe
Confidence            5789999995532        11   122346677776 7899999999875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=7.6e-12  Score=104.92  Aligned_cols=121  Identities=18%  Similarity=0.129  Sum_probs=84.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +|.+|||+|||+|+++.+++.. +          .+|+++|+++ +          ..+.+++++ ++|+.+.  ...+.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g-~----------~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i-~~d~~~~--~~~~~  210 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG-F----------REVVAVDSSAEALRRAEENARLNGLGNVRVL-EANAFDL--LRRLE  210 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-E----------EEEEEEESCHHHHHHHHHHHHHTTCTTEEEE-ESCHHHH--HHHHH
T ss_pred             CCCeeeccCCCCcHHHHHHHhc-C----------CcEEeecchHHHHHHHHHHHHHcCCCCccee-eccHHHH--hhhhH
Confidence            6899999999999999988753 2          5999999996 1          234567888 8886652  11121


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHh
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITR  199 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~  199 (229)
                        ..+++||+|++|++....+.  .+..........++..+.++|+|||.+++...+. -+..++.+.+..
T Consensus       211 --~~~~~fD~Vi~DpP~~~~~~--~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~  277 (318)
T d1wxxa2         211 --KEGERFDLVVLDPPAFAKGK--KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAE  277 (318)
T ss_dssp             --HTTCCEEEEEECCCCSCCST--TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             --hhhcCCCEEEEcCCccccch--HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHH
Confidence              23578999999987644333  2334444455678899999999999998866543 345556655544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=7.9e-12  Score=105.07  Aligned_cols=133  Identities=19%  Similarity=0.162  Sum_probs=89.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~  126 (229)
                      +++|.+|||+|||+|+++..++..          +..+|+++|+++.           ..+ .+++++ ++|+.+.  ..
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~----------ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~-~~d~~~~--~~  209 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIA----------GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI-VGSAFEE--ME  209 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE-ESCHHHH--HH
T ss_pred             cCCCCeeecccCcccchhhhhhhc----------CCcEEEeecCCHHHHHHHHHHHHHcCCCccceee-echhhhh--hH
Confidence            567999999999999999998865          3469999999971           122 246777 8886542  11


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhhC----
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRFY----  201 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~F----  201 (229)
                      .+.  ..+.+||+|++|++....+.  .+..........++..+.++|+|||.+++..-.. -+.+++.+.+...+    
T Consensus       210 ~~~--~~~~~fD~Vi~DpP~~~~~~--~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         210 KLQ--KKGEKFDIVVLDPPAFVQHE--KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             HHH--HTTCCEEEEEECCCCSCSSG--GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHH--hccCCCCchhcCCccccCCH--HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            111  24578999999987643332  2333444455678889999999999998865443 34566666665432    


Q ss_pred             CeeEEEc
Q psy1489         202 SQVKILK  208 (229)
Q Consensus       202 ~~v~~~k  208 (229)
                      ..+++..
T Consensus       286 r~~~~~~  292 (324)
T d2as0a2         286 KFLKMLE  292 (324)
T ss_dssp             EEEEESS
T ss_pred             CeEEEee
Confidence            3455543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.27  E-value=5e-12  Score=99.55  Aligned_cols=120  Identities=10%  Similarity=0.048  Sum_probs=82.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      ...|||||||+|.++..+|+..         |+..++|+|+++ +          ..++++.++ .+|+.+.      ..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~---------p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~-~~da~~l------~~   95 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQN---------PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLL-WVDGSDL------TD   95 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEE-ECCSSCG------GG
T ss_pred             CCeEEEEeccCCHHHHHHHHHC---------CCCceEEEeccHHHHHHHHHhhhhhccccceee-ecCHHHH------hh
Confidence            4579999999999999999986         788999999996 1          246789999 9998873      34


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF  200 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~  200 (229)
                      .+++..+|.|++..+.-...   ..|....-.....+..+.++|+|||.|.+.+....-....++.+...
T Consensus        96 ~~~~~~~~~i~i~fPdPw~K---~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~  162 (204)
T d1yzha1          96 YFEDGEIDRLYLNFSDPWPK---KRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQY  162 (204)
T ss_dssp             TSCTTCCSEEEEESCCCCCS---GGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             hccCCceehhcccccccccc---hhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHC
Confidence            57788999998866421110   01111101124678889999999999988764322223334444443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.26  E-value=1.4e-12  Score=106.08  Aligned_cols=121  Identities=10%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .++.+|||+|||+|.++..++....          ..|++||+++ |        ...+.+.+. ++|+.+..       
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~----------~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~d~~~~~-------  153 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY----------ATTDLLEPVKHMLEEAKRELAGMPVGKFI-LASMETAT-------  153 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC----------SEEEEEESCHHHHHHHHHHTTTSSEEEEE-ESCGGGCC-------
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC----------ceEEEEcCCHHHHHhhhccccccccceeE-Eccccccc-------
Confidence            3568999999999999999887653          4899999997 3        123456777 88876521       


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--C-------------ChHHHHH
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--R-------------NRPQLEE  195 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~-------------~~~~~~~  195 (229)
                       +++++||+|++....        .|.. ......+++.+.++|+|||.++++....  .             ....+.+
T Consensus       154 -~~~~~fD~I~~~~vl--------~hl~-d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~  223 (254)
T d1xtpa_         154 -LPPNTYDLIVIQWTA--------IYLT-DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR  223 (254)
T ss_dssp             -CCSSCEEEEEEESCG--------GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred             -cCCCccceEEeeccc--------cccc-hhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHH
Confidence             456789999996543        1111 1224578999999999999999864221  1             1345666


Q ss_pred             HHHhh-CCeeEEEc
Q psy1489         196 SITRF-YSQVKILK  208 (229)
Q Consensus       196 ~l~~~-F~~v~~~k  208 (229)
                      .+++. |..++..+
T Consensus       224 l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         224 LFNESGVRVVKEAF  237 (254)
T ss_dssp             HHHHHTCCEEEEEE
T ss_pred             HHHHcCCEEEEEEe
Confidence            66665 66555443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.3e-12  Score=104.02  Aligned_cols=147  Identities=12%  Similarity=0.017  Sum_probs=83.3

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCC--CCCeEEecCCCCChhHHHH---------
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPI--DGAVVLSKCDFTQPDIQDR---------  127 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~--~~~~~~~~~D~~~~~~~~~---------  127 (229)
                      .+|.+|||||||+|.++..++...          ..+|+|+|+|+ |...  ..+... ..++........         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~----------~~~v~giD~S~~~i~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  118 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS----------FQDITLSDFTDRNREELEKWLKKE-PGAYDWTPAVKFACELEGNSG  118 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT----------EEEEEEEESCHHHHHHHHHHHHTC-TTCCCCHHHHHHHHHHTTCGG
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc----------cCcEEEecCCHHHHHHHHHHHhhc-cccchhhhHHHHHHHhccccc
Confidence            467899999999999987776542          24799999997 2100  000000 001100000000         


Q ss_pred             -------------------------HHHHhCCCCccEEEeCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHcccCCCEEE
Q psy1489         128 -------------------------LVTILKDDKLDVVLSDMAPNATGMREMDHDL-ITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       128 -------------------------i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~-~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                                               ....++++.||+|++....        .+.. ..+....+++.+.++|||||.|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l--------~~~~~~~~~~~~~l~~i~~~LkpGG~li  190 (257)
T d2a14a1         119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM--------ECACCSLDAYRAALCNLASLLKPGGHLV  190 (257)
T ss_dssp             GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH--------HHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhH--------HHhcccHHHHHHHHHHHHhccCCCcEEE
Confidence                                     0012346789999995532        1110 11344578899999999999999


Q ss_pred             EeecCC---------------CChHHHHHHHHhh-CCeeEE--EcCCCCC--C-CCceEEEEecc
Q psy1489         182 IKIWDG---------------RNRPQLEESITRF-YSQVKI--LKPPSSR--S-HSAELFLLGRG  225 (229)
Q Consensus       182 ~~~~~~---------------~~~~~~~~~l~~~-F~~v~~--~kp~~sr--~-~s~E~Y~v~~~  225 (229)
                      +..+..               ....++.+.+... |..+.+  .......  . .+.-+++|||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arK  255 (257)
T d2a14a1         191 TTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK  255 (257)
T ss_dssp             EEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred             EEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEe
Confidence            865432               2467787888776 654343  3222222  2 34445666774

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.5e-12  Score=104.63  Aligned_cols=120  Identities=15%  Similarity=0.084  Sum_probs=70.7

Q ss_pred             hhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C---CCCCeEEecCCCCC
Q psy1489          54 SKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P---IDGAVVLSKCDFTQ  121 (229)
Q Consensus        54 ~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~---~~~~~~~~~~D~~~  121 (229)
                      .+..-.++..+|||+|||+|.++..++..+....   .+....++|||+|+ |.        .   ++++.+. ..+.+-
T Consensus        33 ~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~---~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~  108 (280)
T d1jqea_          33 GRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQY---PGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFA-WHKETS  108 (280)
T ss_dssp             TTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHS---TTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEE-EECSCH
T ss_pred             HHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhc---cCCceEEEEEeCcHHHHHHHHHHHhhcccccccccc-chhhhh
Confidence            3333344556899999999999988877542100   00123689999986 31        1   2233221 111111


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                      ...........++++||+|++.....     ..      .....+++.+.++|+|||.+++.++...
T Consensus       109 ~~~~~~~~~~~~~~~fD~I~~~~~l~-----~~------~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         109 SEYQSRMLEKKELQKWDFIHMIQMLY-----YV------KDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             HHHHHHHTTSSSCCCEEEEEEESCGG-----GC------SCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             hhhcchhcccCCCCceeEEEEcccee-----cC------CCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            11111222235678999999966431     11      1134688999999999999988776543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.2e-12  Score=104.74  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=69.6

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------------CCCCCeEEecCCCCCh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------PIDGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------~~~~~~~~~~~D~~~~  122 (229)
                      +++|++|||+|||+|..+..+++.++        +.++|+++|+++ +.               ...++.+. .+|..+.
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~--------~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~-~gD~~~~  144 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVG--------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV-VGDGRMG  144 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHC--------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE-ESCGGGC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhC--------CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE-Eeecccc
Confidence            57899999999999999999999887        788999999986 21               12356667 7776542


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                              ..++..||+|++++...     ..            ...+.+.|||||++++-+.
T Consensus       145 --------~~~~~~fD~I~~~~~~~-----~i------------p~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         145 --------YAEEAPYDAIHVGAAAP-----VV------------PQALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             --------CGGGCCEEEEEECSBBS-----SC------------CHHHHHTEEEEEEEEEEES
T ss_pred             --------cchhhhhhhhhhhcchh-----hc------------CHHHHhhcCCCcEEEEEEc
Confidence                    13356899999987541     11            1235678999999998654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=8.5e-12  Score=97.24  Aligned_cols=113  Identities=17%  Similarity=0.293  Sum_probs=84.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ++++..+||++||+|+.+..+++..         |.++|+|+|.++ |.        . -.++.++ ++++.+...   +
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~---------~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~-~~~f~~~~~---~   87 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHC---------PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF-KVSYREADF---L   87 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEE-ECCGGGHHH---H
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcC---------CCCeEEEeechHHHHHHHHHhhccccccccch-hHHHhhHHH---H
Confidence            5688999999999999999999987         678999999997 21        1 2357788 888776432   2


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcc---cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREM---DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN  189 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~---d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~  189 (229)
                      ...+..++||.|+.|..     +.+.   +....+......|..+.++|+|||.+++..|+..+
T Consensus        88 ~~~~~~~~vdgIl~DlG-----vSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~E  146 (192)
T d1m6ya2          88 LKTLGIEKVDGILMDLG-----VSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLE  146 (192)
T ss_dssp             HHHTTCSCEEEEEEECS-----CCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHH
T ss_pred             HHHcCCCCcceeeeccc-----hhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHH
Confidence            33355679999999974     3221   11123445568899999999999999987877554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.9e-11  Score=102.73  Aligned_cols=95  Identities=23%  Similarity=0.188  Sum_probs=68.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------C-CCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------P-IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~-~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+|++|||||||+|.++..+++.          ++.+|+|+|.+++.          . ...+.++ .+|+.+..     
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~----------Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i-~~~~~~l~-----  100 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKH----------GAKHVIGVDMSSIIEMAKELVELNGFSDKITLL-RGKLEDVH-----  100 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT----------CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEE-ESCTTTSC-----
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHHHhCccccceEE-Eeehhhcc-----
Confidence            36899999999999999888765          34699999999842          1 2357788 89888742     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                         +++.+||+|++........ ...       ....++....++|||||.++
T Consensus       101 ---~~~~~~D~i~se~~~~~~~-~e~-------~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         101 ---LPFPKVDIIISEWMGYFLL-YES-------MMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ---CSSSCEEEEEECCCBTTBS-TTC-------CHHHHHHHHHHHEEEEEEEE
T ss_pred             ---CcccceeEEEEEecceeec-cch-------hHHHHHHHHHhccCCCeEEE
Confidence               5678999999976532111 111       12356666789999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2.3e-11  Score=101.77  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=69.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+|++|||||||+|.++..+++.          ++.+|+|+|.+++.          .. .++.++ ++|+.+..     
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~----------Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~-~~~~~~~~-----   95 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKA----------GARKVIGIECSSISDYAVKIVKANKLDHVVTII-KGKVEEVE-----   95 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEE-ESCTTTCC-----
T ss_pred             CCcCEEEEEecCCcHHHHHHHHh----------CCCEEEEEcCcHHHhhhhhHHHHhCCccccceE-eccHHHcc-----
Confidence            36899999999999999988875          34689999999841          12 357888 89988742     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                         ++.++||+|++......  ....      .....++..+.++|+|||.++
T Consensus        96 ---~~~~~~D~ivs~~~~~~--l~~e------~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          96 ---LPVEKVDIIISEWMGYC--LFYE------SMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             ---CSSSCEEEEEECCCBBT--BTBT------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---cccceeEEEeeeeeeee--eccH------HHHHHHHHHHHhcCCCCeEEE
Confidence               45678999999754321  1111      123466778899999999986

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=3.6e-11  Score=97.93  Aligned_cols=92  Identities=20%  Similarity=0.137  Sum_probs=70.1

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~  126 (229)
                      +++|.+|||+|||+|.++..+|++          +.++|+|+|+++.           ..+. .++++ ++|..+.    
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~----------~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~-~~D~~~~----  169 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY----------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY-NMDNRDF----  169 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH----------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE-CSCTTTC----
T ss_pred             cCCccEEEECcceEcHHHHHHHHh----------CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEE-EcchHHh----
Confidence            578999999999999999999876          3469999999971           1333 37888 9998762    


Q ss_pred             HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                           .....||.|+++.++..               ...+..+.++|++||.+.+..+
T Consensus       170 -----~~~~~~D~Ii~~~p~~~---------------~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         170 -----PGENIADRILMGYVVRT---------------HEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             -----CCCSCEEEEEECCCSSG---------------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -----ccCCCCCEEEECCCCch---------------HHHHHHHHhhcCCCCEEEEEec
Confidence                 34678999999876521               1345668889999999865443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.18  E-value=6.2e-11  Score=99.17  Aligned_cols=125  Identities=14%  Similarity=0.051  Sum_probs=81.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC--CCCeEEecCCCCChhHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI--DGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~--~~~~~~~~~D~~~~~~~  125 (229)
                      +.+|.+|||++||+|+++.+++..          +...|++||+++.           ..+  .+++++ ++|+.+.   
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~----------ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i-~~d~~~~---  207 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG----------GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLV-VMDVFDY---  207 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT----------TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEE-ESCHHHH---
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC----------CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEE-EccHHHH---
Confidence            457999999999999999887653          3468999999972           122  356788 8886542   


Q ss_pred             HHHHHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhhC
Q psy1489         126 DRLVTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRFY  201 (229)
Q Consensus       126 ~~i~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~F  201 (229)
                        +... ..+++||+|++|++.....-....  ........++..+.++|+|||.+++..-+. -+..++...+...+
T Consensus       208 --l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~--~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~  281 (317)
T d2b78a2         208 --FKYARRHHLTYDIIIIDPPSFARNKKEVF--SVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGF  281 (317)
T ss_dssp             --HHHHHHTTCCEEEEEECCCCC-----CCC--CHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             --HHHHHhhcCCCCEEEEcChhhccchhHHH--HHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHH
Confidence              2221 235689999999874221111111  122234467888999999999998865432 35666666665543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.6e-11  Score=100.46  Aligned_cols=103  Identities=13%  Similarity=0.081  Sum_probs=74.2

Q ss_pred             hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------------------CCCCC
Q psy1489          52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------------------PIDGA  111 (229)
Q Consensus        52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------------------~~~~~  111 (229)
                      +.++.. ++++++|||||||+|.++..+|+..         +..+++|||+++ +.                   ...++
T Consensus       143 ~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~---------~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         143 MIDEIK-MTDDDLFVDLGSGVGQVVLQVAAAT---------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             HHHHSC-CCTTCEEEEETCTTSHHHHHHHHHC---------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHh---------CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            333444 5789999999999999999998875         446899999997 21                   23468


Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .++ ++|+.+.+..+.+.      .+|+|+++...     ..       .....+|.++.+.|||||++|+.
T Consensus       213 ~~~-~gd~~~~~~~~~~~------~advi~~~~~~-----f~-------~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         213 TLE-RGDFLSEEWRERIA------NTSVIFVNNFA-----FG-------PEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             EEE-ECCTTSHHHHHHHH------HCSEEEECCTT-----TC-------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             EEE-ECcccccccccccC------cceEEEEccee-----cc-------hHHHHHHHHHHHhCCCCcEEEEe
Confidence            889 99999876443322      36888875321     11       12346788899999999999863

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.4e-12  Score=107.90  Aligned_cols=106  Identities=18%  Similarity=0.109  Sum_probs=66.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------CC----CCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------ID----GAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~~----~~~~~~~~D~~~~~~  124 (229)
                      +++.+|||+|||+|.++..|++. +          .+|+|+|+|+ |..          ..    ...+. ..|+...+ 
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~-g----------~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~-  121 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE-G----------FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE-EANWLTLD-  121 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE-ECCGGGHH-
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc-C----------CeeeeccCchHHHHHHHHHHHhcccccccceeeee-eccccccc-
Confidence            35689999999999999999875 2          5899999997 311          00    12233 44443321 


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                          ........||+|++....- .  +..+.....+....+|+++.++|||||.|++.+.
T Consensus       122 ----~~~~~~~~fd~v~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         122 ----KDVPAGDGFDAVICLGNSF-A--HLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             ----HHSCCTTCEEEEEECSSCG-G--GSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----cccCCCCCceEEEEecCch-h--hcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence                1122356899999843210 0  0000000012345789999999999999998653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.9e-11  Score=99.41  Aligned_cols=95  Identities=25%  Similarity=0.244  Sum_probs=68.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCCCCeEEecCCCCChhHHHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PIDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+|++|||||||+|.++..+|+.          ++.+|+|+|.++. .          ....+.++ .+|+.+..     
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~----------Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~-~~~~~~l~-----   97 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKA----------GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLI-KGKIEEVH-----   97 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHT----------TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEE-ESCTTTSC-----
T ss_pred             CCcCEEEEECCCCCHHHHHHHHc----------CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEE-EeeHHHhc-----
Confidence            36899999999999999988875          3469999999982 1          12457888 89888732     


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL  181 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v  181 (229)
                         ++..+||+|++........ . .      .....++....++|+|||.++
T Consensus        98 ---~~~~~~D~Ivse~~~~~~~-~-e------~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          98 ---LPVEKVDVIISEWMGYFLL-F-E------SMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             ---CSCSCEEEEEECCCBTTBT-T-T------CHHHHHHHHHHHHEEEEEEEE
T ss_pred             ---CccccceEEEEeeeeeecc-c-c------cccHHHHHHHHhcCCCCcEEe
Confidence               4567999999975432111 1 0      123355566778999999987

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=6.9e-11  Score=98.74  Aligned_cols=124  Identities=16%  Similarity=0.237  Sum_probs=87.2

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|++|||+|||||+-+.+++..+.        ..+.++++|+++  +         ....++... ..|.....    
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~--------~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~-~~d~~~~~----  180 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMR--------NDGVIYAFDVDENRLRETRLNLSRLGVLNVILF-HSSSLHIG----  180 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTT--------TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEE-SSCGGGGG----
T ss_pred             CCccceeeecccchhhhhHhhhhhcc--------cccceeeeccCHHHHHHHHHHHHHHHhhccccc-cccccccc----
Confidence            46899999999999999999999876        678999999986  1         123456666 66654421    


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCccc-----------HHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCChHHH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMD-----------HDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNRPQL  193 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~~~~  193 (229)
                          .....||.|+.|+++..+|....+           ......++..+|..+.+.|||||.+|-.+-+   .++...+
T Consensus       181 ----~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV  256 (313)
T d1ixka_         181 ----ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI  256 (313)
T ss_dssp             ----GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHH
T ss_pred             ----cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHH
Confidence                225689999999998777754322           1223446668999999999999998855432   3344444


Q ss_pred             HHHHHh
Q psy1489         194 EESITR  199 (229)
Q Consensus       194 ~~~l~~  199 (229)
                      ...++.
T Consensus       257 ~~~L~~  262 (313)
T d1ixka_         257 QWALDN  262 (313)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            455554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.13  E-value=7.4e-11  Score=95.79  Aligned_cols=102  Identities=23%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             hhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------C-CCCCeEEecCCCCC
Q psy1489          53 DSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------P-IDGAVVLSKCDFTQ  121 (229)
Q Consensus        53 ~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~-~~~~~~~~~~D~~~  121 (229)
                      .+.+. +....+|||||||+|.++..++++.         |..+++++|+.++.          . ...+.+. .+|+.+
T Consensus        74 ~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~---------P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~-~~d~~~  142 (256)
T d1qzza2          74 ADAYD-WSAVRHVLDVGGGNGGMLAAIALRA---------PHLRGTLVELAGPAERARRRFADAGLADRVTVA-EGDFFK  142 (256)
T ss_dssp             HHTSC-CTTCCEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE-ECCTTS
T ss_pred             HhcCC-CccCCEEEEECCCCCHHHHHHHHhh---------cCcEEEEecChHHHHHHHHHHhhcCCcceeeee-eeeccc
Confidence            33444 4566899999999999999999986         77899999985321          1 2357777 788765


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      +         + +..+|+|++....     +.++.    +.+..+|+++.+.|||||++++..
T Consensus       143 ~---------~-p~~~D~v~~~~vL-----h~~~d----~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         143 P---------L-PVTADVVLLSFVL-----LNWSD----EDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             C---------C-SCCEEEEEEESCG-----GGSCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c---------c-cccchhhhccccc-----cccCc----HHHHHHHHHHHhhcCCcceeEEEE
Confidence            2         3 3469999985432     22322    345678899999999999998754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.11  E-value=1e-11  Score=99.07  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|++|||+|||+|.++..+++..           ++|+++|+++ +        ....++.++ .+|....       
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~-----------~~V~aiE~~~~~~~~A~~~~~~~~nv~~~-~~d~~~g-------  128 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV-----------DKVVSVEINEKMYNYASKLLSYYNNIKLI-LGDGTLG-------  128 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEEESCHHHHHHHHHHHTTCSSEEEE-ESCGGGC-------
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh-----------cccccccccHHHHHHHHHHHhcccccccc-cCchhhc-------
Confidence            6799999999999999999988864           5999999986 1        234678888 8886542       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       +...++||.|++.++..     ...            ....+.|+|||++|+-+-
T Consensus       129 -~~~~~pfD~Iiv~~a~~-----~ip------------~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         129 -YEEEKPYDRVVVWATAP-----TLL------------CKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             -CGGGCCEEEEEESSBBS-----SCC------------HHHHHTEEEEEEEEEEEC
T ss_pred             -chhhhhHHHHHhhcchh-----hhh------------HHHHHhcCCCCEEEEEEc
Confidence             12246799999977531     111            124567999999998553

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.7e-11  Score=99.96  Aligned_cols=123  Identities=17%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--------CCC---------------------
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--------IDG---------------------  110 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--------~~~---------------------  110 (229)
                      .|.+|||+|||||.++...+...          ..+|+|+|+++ |..        .+.                     
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~----------~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  123 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH----------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW  123 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG----------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc----------CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchh
Confidence            57899999999998876655442          24899999997 211        000                     


Q ss_pred             -----------CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHcccCCC
Q psy1489         111 -----------AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDL-ITQLAIAVIRFAVTYSKPGA  178 (229)
Q Consensus       111 -----------~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~-~~~~~~~~l~~~~~~LkpgG  178 (229)
                                 ...+ ..|++.......  .....+.||+|++....        ++.. ..+....+++.+.++|||||
T Consensus       124 ~~~~~~~~~~~~~~~-~~Dv~~~~~~~~--~~~~~~~fD~V~~~~~l--------~~i~~~~~~~~~~l~~~~~~LkPGG  192 (263)
T d2g72a1         124 QDKERQLRARVKRVL-PIDVHQPQPLGA--GSPAPLPADALVSAFCL--------EAVSPDLASFQRALDHITTLLRPGG  192 (263)
T ss_dssp             HHHHHHHHHHEEEEE-CCCTTSSSTTCS--SCSSCSSEEEEEEESCH--------HHHCSSHHHHHHHHHHHHTTEEEEE
T ss_pred             hhhHHHhhhhhhccc-cccccCCCcccc--CCcCcCccCeeeeHHHH--------HHHccCHHHHHHHHHHHHHHcCCCC
Confidence                       0112 234333211000  00224579999995532        1110 01235678999999999999


Q ss_pred             EEEEeecC---------------CCChHHHHHHHHhh-CCee
Q psy1489         179 DCLIKIWD---------------GRNRPQLEESITRF-YSQV  204 (229)
Q Consensus       179 ~~v~~~~~---------------~~~~~~~~~~l~~~-F~~v  204 (229)
                      .|++....               .....++.+.+... |..+
T Consensus       193 ~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~  234 (263)
T d2g72a1         193 HLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVR  234 (263)
T ss_dssp             EEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             EEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEE
Confidence            99875421               12456777777776 6433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.02  E-value=3.1e-10  Score=84.90  Aligned_cols=97  Identities=18%  Similarity=0.090  Sum_probs=64.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .|.+|||+|||+|.++..++.+          .+.+|++||.++.           ... ..++++ ++|+..     .+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~r----------ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii-~~D~~~-----~l   77 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSR----------GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL-KMEAER-----AI   77 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT----------TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE-CSCHHH-----HH
T ss_pred             CCCeEEEcCCccCHHHHHHHHh----------Ccceeeeehhchhhhhhhhhhhhhcccccchhhh-cccccc-----cc
Confidence            5899999999999999988776          3469999999961           112 247778 787544     12


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .  ...++||+|++|++.         ...........+. ..++|+|||.++++.-
T Consensus        78 ~--~~~~~fDiIf~DPPy---------~~~~~~~~l~~i~-~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          78 D--CLTGRFDLVFLDPPY---------AKETIVATIEALA-AKNLLSEQVMVVCETD  122 (152)
T ss_dssp             H--HBCSCEEEEEECCSS---------HHHHHHHHHHHHH-HTTCEEEEEEEEEEEE
T ss_pred             c--ccccccceeEechhh---------ccchHHHHHHHHH-HCCCcCCCeEEEEEeC
Confidence            2  346789999999753         1111111112222 2468999999998653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.2e-09  Score=93.76  Aligned_cols=104  Identities=15%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------------------CCCC
Q psy1489          52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------------------IDGA  111 (229)
Q Consensus        52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------------------~~~~  111 (229)
                      +.++.+ +++|++|||||||+|..+..+|...+         .++|+|||+++ |..                   ....
T Consensus       208 Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g---------~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~  277 (406)
T d1u2za_         208 VYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG---------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  277 (406)
T ss_dssp             HHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC---------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             HHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence            333444 57899999999999999999998873         45899999996 210                   0111


Q ss_pred             eE-EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         112 VV-LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       112 ~~-~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .. . .+++.+.+...   ..+  ..+|+|+.+...     .  +     ......|.++.+.|||||++|+.
T Consensus       278 ~~~~-~~~f~~~~~~d---~~~--~~adVV~inn~~-----f--~-----~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         278 EFSL-KKSFVDNNRVA---ELI--PQCDVILVNNFL-----F--D-----EDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EEEE-SSCSTTCHHHH---HHG--GGCSEEEECCTT-----C--C-----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeee-eechhhccccc---ccc--ccceEEEEeccc-----C--c-----hHHHHHHHHHHHhcCCCcEEEEe
Confidence            22 3 55555543322   122  258999985421     1  1     12346788899999999999863

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.02  E-value=5.7e-10  Score=89.87  Aligned_cols=105  Identities=11%  Similarity=0.109  Sum_probs=77.8

Q ss_pred             HhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHH
Q psy1489          50 LEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        50 ~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~  125 (229)
                      ..+.+.+..+....+|||+|||+|.++..++++.         |..+++..|+-+.    ....+++++ .+|+.++   
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~---------P~l~~~v~Dlp~vi~~~~~~~ri~~~-~gd~~~~---  136 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY---------PLIKGINFDLPQVIENAPPLSGIEHV-GGDMFAS---  136 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECHHHHTTCCCCTTEEEE-ECCTTTC---
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHC---------CCCeEEEecchhhhhccCCCCCeEEe-cCCcccc---
Confidence            3444456655667899999999999999999987         7789999998542    234578888 8998763   


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                            ++  ..|+++....     .++++.    +.+..+|+.+.+.|+|||++++..
T Consensus       137 ------~p--~~D~~~l~~v-----Lh~~~d----e~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         137 ------VP--QGDAMILKAV-----CHNWSD----EKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             ------CC--CEEEEEEESS-----GGGSCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------cc--cceEEEEehh-----hhhCCH----HHHHHHHHHHHHHcCCCcEEEEEE
Confidence                  33  3598887432     233332    457788999999999999988754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=2.7e-10  Score=87.75  Aligned_cols=134  Identities=16%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|+.++|..+|.|+.+..+++.           .++|+|+|.++..       ..+++.++ ++++.+..   .+...
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~-----------~~~viaiD~D~~ai~~a~~~~~~~~~~~-~~~f~~~~---~~l~~   80 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILER-----------GGRVIGLDQDPEAVARAKGLHLPGLTVV-QGNFRHLK---RHLAA   80 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-----------TCEEEEEESCHHHHHHHHHTCCTTEEEE-ESCGGGHH---HHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcc-----------cCcEEEEhhhhhHHHHHhhccccceeEe-ehHHHHHH---HHHHH
Confidence            578999999999999999998875           3699999999731       23577888 88877632   22223


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcC
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP  209 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp  209 (229)
                      +..+.+|.|+.|+........+  ....+......|..+..+|+|||.+++..|+..+...+...++....+....||
T Consensus        81 ~~~~~vdgIl~DLGvSs~qld~--~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i~kK~  156 (182)
T d1wg8a2          81 LGVERVDGILADLGVSSFHLDD--PSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVLTKKP  156 (182)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHC--GGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEESCSSC
T ss_pred             cCCCccCEEEEEccCCHHHhhc--chHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceeccCCC
Confidence            4457899999998532111111  112234455688999999999999999888766544455666665544444444

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.7e-09  Score=88.11  Aligned_cols=127  Identities=15%  Similarity=0.188  Sum_probs=80.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .++|++|||+|||||+.+.+++..++        +.++|+++|+++  +         ..+.++.+. ..|.......  
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~--------~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~-~~d~~~~~~~--  160 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLK--------NQGKIFAFDLDAKRLASMATLLARAGVSCCELA-EEDFLAVSPS--  160 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHT--------TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCGGGSCTT--
T ss_pred             CCccceEEecccchhhHHHHHHHHhc--------CCceEeeecCCHHHHHHHHHHHHhcCccceeee-ehhhhhhccc--
Confidence            46799999999999999999999886        678999999985  1         134567776 6765542100  


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCccc-------------HHHHHHHHHHHHHHHHHcccCCCEEEEeec---CCCChH
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMD-------------HDLITQLAIAVIRFAVTYSKPGADCLIKIW---DGRNRP  191 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-------------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~---~~~~~~  191 (229)
                         .-..+.||.|+.|+++..+|.....             ......++..++..|. .|+|||++|-.+-   ..++..
T Consensus       161 ---~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~  236 (293)
T d2b9ea1         161 ---DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENED  236 (293)
T ss_dssp             ---CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHH
T ss_pred             ---ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHH
Confidence               0012579999999987766653221             1223345556777777 4799999875442   223434


Q ss_pred             HHHHHHHhh
Q psy1489         192 QLEESITRF  200 (229)
Q Consensus       192 ~~~~~l~~~  200 (229)
                      .+...++.+
T Consensus       237 vV~~~L~~~  245 (293)
T d2b9ea1         237 VVRDALQQN  245 (293)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHhC
Confidence            444555543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=3.1e-10  Score=89.70  Aligned_cols=91  Identities=18%  Similarity=0.344  Sum_probs=68.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +++|++|||+|||+|..+..+++..+          ++|+++|.++ +          ..+.++.++ .+|..+.     
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g----------~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~-~gd~~~g-----  139 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK----------TDVYTIERIPELVEFAKRNLERAGVKNVHVI-LGDGSKG-----  139 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC----------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ESCGGGC-----
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC----------ceeEEEeccHHHHHHHHHHHHHcCCceeEEE-ECccccC-----
Confidence            67899999999999999999998764          5899999986 2          145788999 9987652     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                         .....+||.|++.++..     ....            ...+.|+|||++++-+-
T Consensus       140 ---~~~~~pfD~Iiv~~a~~-----~ip~------------~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         140 ---FPPKAPYDVIIVTAGAP-----KIPE------------PLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             ---CGGGCCEEEEEECSBBS-----SCCH------------HHHHTEEEEEEEEEEEC
T ss_pred             ---CcccCcceeEEeecccc-----cCCH------------HHHHhcCCCCEEEEEEc
Confidence               13357899999977531     1211            14567999999998553

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=4.4e-11  Score=95.26  Aligned_cols=98  Identities=11%  Similarity=0.261  Sum_probs=69.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------------CCCCCeEEecCCCCCh
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------PIDGAVVLSKCDFTQP  122 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------~~~~~~~~~~~D~~~~  122 (229)
                      +++|++|||+|||+|.++..+++.++..+.   ++..+|+++|.++ +.               .+.++.+. .+|..+.
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~---~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~-~~d~~~~  153 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGV---DADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV-EGDGRKG  153 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCC---CTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE-ESCGGGC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccC---CcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE-ecccccc
Confidence            578999999999999999999998862210   0124899999986 21               12467788 8886652


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                              ..+..+||.|+++++..     ....            ...+.|+|||++++-+.
T Consensus       154 --------~~~~~~fD~Iiv~~a~~-----~~p~------------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         154 --------YPPNAPYNAIHVGAAAP-----DTPT------------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             --------CGGGCSEEEEEECSCBS-----SCCH------------HHHHTEEEEEEEEEEES
T ss_pred             --------cccccceeeEEEEeech-----hchH------------HHHHhcCCCcEEEEEEe
Confidence                    13356899999987642     1211            25678999999988654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.92  E-value=1.8e-09  Score=89.47  Aligned_cols=123  Identities=16%  Similarity=0.038  Sum_probs=77.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC--CCeEEecCCCCChhHHH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID--GAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~--~~~~~~~~D~~~~~~~~  126 (229)
                      .++.+||||+||+|+++.+++.. +          ++|++||.++.           ..+.  .++++ ++|+.+.    
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~-G----------A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i-~~D~~~~----  194 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAA-G----------AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWI-CEDAMKF----  194 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-T----------CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEE-CSCHHHH----
T ss_pred             cCCCeEEEecCCCcHHHHHHHhC-C----------CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEE-eCCHHHh----
Confidence            46789999999999999998753 2          48999999961           1222  47788 8886652    


Q ss_pred             HHHHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhh
Q psy1489         127 RLVTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRF  200 (229)
Q Consensus       127 ~i~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~  200 (229)
                       +... ..+..||+|++|++.-..+-... ...........+..+..+|+|||.+++...+.  .....+.+.+...
T Consensus       195 -l~~~~~~~~~fD~IilDPP~f~~~~~~~-~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~  269 (309)
T d2igta1         195 -IQREERRGSTYDIILTDPPKFGRGTHGE-VWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRET  269 (309)
T ss_dssp             -HHHHHHHTCCBSEEEECCCSEEECTTCC-EEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             -HHHHhhcCCCCCEEEECCCcccccccch-hHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence             2111 23578999999987422221111 01111222345667889999999866554433  2344555555554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.4e-09  Score=84.28  Aligned_cols=137  Identities=10%  Similarity=-0.036  Sum_probs=86.1

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~~i  128 (229)
                      +..++||+|||+|..+..++.+.         ++.+++|+|+++.           ..+. .+.+. +.+....- ...+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~---------~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~-~~~~~~~~-~~~~  129 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL---------NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV-KVPQKTLL-MDAL  129 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH---------HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE-ECCTTCSS-TTTS
T ss_pred             ccceEEEeCCCchHHHHHHHHhC---------CCccccceecCHHHHHHHHHHHHHhCCCcceeee-eeccHHhh-hhhh
Confidence            34689999999999999999987         5689999999961           1222 24444 43332210 0000


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcc-----c-----HH--------------HHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREM-----D-----HD--------------LITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~-----d-----~~--------------~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       ....+++||+|+||++.-.......     .     +.              .........+.++..++++.|.+.+.+
T Consensus       130 -~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i  208 (250)
T d2h00a1         130 -KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML  208 (250)
T ss_dssp             -TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE
T ss_pred             -hhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe
Confidence             0123567999999987422111000     0     00              001235577888999999999998777


Q ss_pred             cCCCChHHHHHHHHhh-CCeeEEEcC
Q psy1489         185 WDGRNRPQLEESITRF-YSQVKILKP  209 (229)
Q Consensus       185 ~~~~~~~~~~~~l~~~-F~~v~~~kp  209 (229)
                      -...+..++...|+.. |.++++.+.
T Consensus       209 g~~~~l~~i~~~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         209 GKKCSLAPLKEELRIQGVPKVTYTEF  234 (250)
T ss_dssp             SSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cchhhHHHHHHHHHHcCCCeEEEEEe
Confidence            6667778888888665 667766654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=4.8e-10  Score=87.33  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .|++|||+|||+|.++..++.+          +..+|+|+|+++.      ...+++.++ .+|+.+          + +
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~----------ga~~V~~vDid~~a~~~ar~N~~~~~~~-~~D~~~----------l-~  105 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLL----------GAESVTAFDIDPDAIETAKRNCGGVNFM-VADVSE----------I-S  105 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT----------TBSEEEEEESCHHHHHHHHHHCTTSEEE-ECCGGG----------C-C
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc----------CCCcccccccCHHHHHHHHHccccccEE-EEehhh----------c-C
Confidence            5899999999999998876664          3358999999972      135678888 998765          3 4


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      ++||+|++|++.
T Consensus       106 ~~fD~Vi~NPPf  117 (197)
T d1ne2a_         106 GKYDTWIMNPPF  117 (197)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CcceEEEeCccc
Confidence            689999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.88  E-value=1.8e-08  Score=78.80  Aligned_cols=125  Identities=18%  Similarity=0.081  Sum_probs=80.0

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-C-CCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-P-IDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-~-~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .+++.+|||.|||+|.|...+.++..        ....++|+|+++.. . ......+ .+|....         .....
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~--------~~~~i~g~ei~~~~~~~~~~~~~~-~~~~~~~---------~~~~~   78 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHG--------TAYRFVGVEIDPKALDLPPWAEGI-LADFLLW---------EPGEA   78 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHC--------SCSEEEEEESCTTTCCCCTTEEEE-ESCGGGC---------CCSSC
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhcc--------ccceEEeeecCHHHHhhcccceee-eeehhcc---------ccccc
Confidence            46789999999999999988887764        45689999999832 2 2334556 6665432         23568


Q ss_pred             ccEEEeCCCCCCCCCCcc-----cHHHH-------------HHHHHHHHHHHHHcccCCCEEEEeec----CCCChHHHH
Q psy1489         137 LDVVLSDMAPNATGMREM-----DHDLI-------------TQLAIAVIRFAVTYSKPGADCLIKIW----DGRNRPQLE  194 (229)
Q Consensus       137 ~D~V~sd~~~~~~g~~~~-----d~~~~-------------~~~~~~~l~~~~~~LkpgG~~v~~~~----~~~~~~~~~  194 (229)
                      ||+|+++.+.........     .....             ..+....+..+.++|+|||.+++.+.    .......+.
T Consensus        79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR  158 (223)
T d2ih2a1          79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLR  158 (223)
T ss_dssp             EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHH
T ss_pred             cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHH
Confidence            999999987432111110     00000             00223567789999999999887652    233456666


Q ss_pred             HHHHhhC
Q psy1489         195 ESITRFY  201 (229)
Q Consensus       195 ~~l~~~F  201 (229)
                      +.+.+.+
T Consensus       159 ~~l~~~~  165 (223)
T d2ih2a1         159 EFLAREG  165 (223)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            6665544

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=4.3e-08  Score=79.68  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ..+|+|+|||+|..+..+++.          ++.+|+|+|+++-           .... .+.+. .+|+.+...     
T Consensus       111 ~~~vld~g~GsG~i~~~la~~----------~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~-~~~~~~~~~-----  174 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKF----------SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR-KGEFLEPFK-----  174 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH----------SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE-ESSTTGGGG-----
T ss_pred             ccEEEEeeeeeehhhhhhhhc----------ccceeeechhhhhHHHHHHHHHHHcCCCceeEEe-ecccccccc-----
Confidence            468999999999999988754          6789999999971           1222 34555 788776311     


Q ss_pred             HHhCCCCccEEEeCCCCCCC-----CCCcccHHHH-------HHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489         130 TILKDDKLDVVLSDMAPNAT-----GMREMDHDLI-------TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI  197 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~-----g~~~~d~~~~-------~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l  197 (229)
                        ...++||+|+||++--..     .....++...       +.....+   +.++|+|||.+++++-... .    +.+
T Consensus       175 --~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig~~Q-~----~~v  244 (271)
T d1nv8a_         175 --EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIGEDQ-V----EEL  244 (271)
T ss_dssp             --GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECCTTC-H----HHH
T ss_pred             --cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEECHHH-H----HHH
Confidence              113689999999872100     0000111100       1122232   4578999999999874322 2    345


Q ss_pred             HhhCCeeEEEcCCCCCCCCceEEEEecc
Q psy1489         198 TRFYSQVKILKPPSSRSHSAELFLLGRG  225 (229)
Q Consensus       198 ~~~F~~v~~~kp~~sr~~s~E~Y~v~~~  225 (229)
                      .+.|.++.++|.-    +..+.++++++
T Consensus       245 ~~l~~~~g~~kDl----~g~~R~~~~~k  268 (271)
T d1nv8a_         245 KKIVSDTVFLKDS----AGKYRFLLLNR  268 (271)
T ss_dssp             TTTSTTCEEEECT----TSSEEEEEEEC
T ss_pred             HHHHHhCCEEecc----CCCcEEEEEEE
Confidence            5667778887763    34455666543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.73  E-value=6.7e-08  Score=77.30  Aligned_cols=102  Identities=11%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHH
Q psy1489          52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +...+.......+|||+|||+|.++..++++.         |+.+++..|+-+..    ..+++.++ .+|+.++     
T Consensus        72 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dlp~vi~~~~~~~r~~~~-~~d~~~~-----  136 (243)
T d1kyza2          72 ILETYTGFEGLKSLVDVGGGTGAVINTIVSKY---------PTIKGINFDLPHVIEDAPSYPGVEHV-GGDMFVS-----  136 (243)
T ss_dssp             HHHHCCTTSSCSEEEEETCTTSHHHHHHHHHC---------TTSEEEEEECTTTTTTCCCCTTEEEE-ECCTTTC-----
T ss_pred             HHHhcccccCCcEEEEecCCCcHHHHHHHHHC---------CCCeEEEcccHHhhhhcccCCceEEe-ccccccc-----
Confidence            33345544556789999999999999999987         78899999997632    23568888 8998763     


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                          ++.  .|+++...-     .++++.    +.+..+|+.+.+.|+|||++++.
T Consensus       137 ----~P~--ad~~~l~~v-----lh~~~d----~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         137 ----IPK--ADAVFMKWI-----CHDWSD----EHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             ----CCC--CSCEECSSS-----STTSCH----HHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             ----CCC--cceEEEEEE-----eecCCH----HHHHHHHHHHHHhcCCCceEEEE
Confidence                332  344443221     222322    34678899999999999998775

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=1.3e-09  Score=82.98  Aligned_cols=99  Identities=15%  Similarity=0.074  Sum_probs=60.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      +.+|.+|||+|||+|.++..++.+ +          ++|+++|.++. .          .+ ..++. ..+   .+....
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~-g----------a~vv~vD~~~~a~~~~~~N~~~~~~-~~~v~-~~~---~d~~~~  102 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE-G----------WEAVLVEKDPEAVRLLKENVRRTGL-GARVV-ALP---VEVFLP  102 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT-T----------CEEEEECCCHHHHHHHHHHHHHHTC-CCEEE-CSC---HHHHHH
T ss_pred             ccCCCeEEEeccccchhhhhhhhc-c----------chhhhcccCHHHHhhhhHHHHhhcc-cccee-eee---hhcccc
Confidence            457889999999999999987765 2          58999999972 1          11 12233 222   111111


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                       .......+||+|++|++...    +...     ....++  ...+|+|||.+++..-
T Consensus       103 -~~~~~~~~fD~If~DPPY~~----~~~~-----~l~~l~--~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         103 -EAKAQGERFTVAFMAPPYAM----DLAA-----LFGELL--ASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             -HHHHTTCCEEEEEECCCTTS----CTTH-----HHHHHH--HHTCEEEEEEEEEEEE
T ss_pred             -cccccCCccceeEEcccccc----CHHH-----HHHHHH--HcCCcCCCeEEEEEec
Confidence             11244678999999986421    1111     122222  2468999999988653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=5.6e-09  Score=80.24  Aligned_cols=95  Identities=15%  Similarity=0.032  Sum_probs=64.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+.+||||+||+|.++..++.+          +..+|+.||.++-           ....+..++ .+|+.+     .+.
T Consensus        43 ~~~~vLDlfaGsG~~giealsr----------Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii-~~d~~~-----~l~  106 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR----------YAAGATLIEMDRAVSQQLIKNLATLKAGNARVV-NSNAMS-----FLA  106 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT----------TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEE-CSCHHH-----HHS
T ss_pred             chhhhhhhhccccceeeeEEec----------CcceeEEEEEeechhhHHHHHHhhccccceeee-eecccc-----ccc
Confidence            5789999999999999988876          3469999999961           123466777 776432     121


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeec
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIW  185 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~  185 (229)
                        ....+||+|++|++..   .  ...       ..++..+  ..+|+++|.++++..
T Consensus       107 --~~~~~fDlIf~DPPY~---~--~~~-------~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         107 --QKGTPHNIVFVDPPFR---R--GLL-------EETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             --SCCCCEEEEEECCSSS---T--TTH-------HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             --ccccccCEEEEcCccc---c--chH-------HHHHHHHHHCCCCCCCeEEEEEec
Confidence              2357899999998642   1  111       1222222  357999999998653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.68  E-value=8.1e-09  Score=80.53  Aligned_cols=64  Identities=23%  Similarity=0.217  Sum_probs=47.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C-----C----CCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y-----P----IDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~-----~----~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      .|.+|||+|||+|.++..++.+          +..+|+|+|+++. .     .    -....++ .+|..+         
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~----------g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~-~~d~~~---------  105 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLL----------GAKEVICVEVDKEAVDVLIENLGEFKGKFKVF-IGDVSE---------  105 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEE-ESCGGG---------
T ss_pred             CCCEEEECcCcchHHHHHHHHc----------CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEE-ECchhh---------
Confidence            5889999999999999887754          3469999999971 0     0    1134566 677544         


Q ss_pred             HhCCCCccEEEeCCCC
Q psy1489         131 ILKDDKLDVVLSDMAP  146 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~  146 (229)
                       + +++||+|++|++.
T Consensus       106 -~-~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         106 -F-NSRVDIVIMNPPF  119 (201)
T ss_dssp             -C-CCCCSEEEECCCC
T ss_pred             -h-CCcCcEEEEcCcc
Confidence             2 5689999999875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.63  E-value=7.9e-09  Score=79.36  Aligned_cols=98  Identities=16%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|.+||||+||+|+++..++.+          ++.+|++||.++.  .         .. .++.++ ++|+.+.     +
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~sr----------Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~-~~D~~~~-----l  104 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSR----------GMDKSICIEKNFAALKVIKENIAITKEPEKFEVR-KMDANRA-----L  104 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE-ESCHHHH-----H
T ss_pred             CCCEEEEcccccccccceeeec----------chhHHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccchhh-----h
Confidence            6899999999999999998876          3468999999961  0         11 256677 7776541     2


Q ss_pred             HHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeecC
Q psy1489         129 VTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIWD  186 (229)
Q Consensus       129 ~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~~  186 (229)
                      ... -...+||+|++|++..     ..+.       ...+..+  ..+|+++|.++++.-.
T Consensus       105 ~~~~~~~~~fDlIflDPPY~-----~~~~-------~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYA-----KQEI-------VSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGG-----GCCH-------HHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhcccCCCcceEEechhhh-----hhHH-------HHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            221 2356899999998631     1111       1223333  3579999999887643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=6.3e-09  Score=81.96  Aligned_cols=116  Identities=19%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +..+|||+|||+|..+..+++.++        ++++|+++|+++ +.          .+ ..++++ .+|..+.  ...+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~--------~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~-~Gd~~e~--l~~l  124 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQ--------PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTIL-NGASQDL--IPQL  124 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCC--------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE-ESCHHHH--GGGH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCC--------CccEEEEEeccHHHHHHHHHHHHHcCCCccceee-ecccccc--ccch
Confidence            347999999999999999998764        568999999986 11          12 247788 8876542  2223


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR  199 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~  199 (229)
                      ........||+|+.|...        +..    .....+.++.++|+|||.+++.-.--+...++.+.++.
T Consensus       125 ~~~~~~~~~D~ifiD~~~--------~~~----~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~  183 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLDHWK--------DRY----LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG  183 (214)
T ss_dssp             HHHSCCCCEEEEEECSCG--------GGH----HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH
T ss_pred             hhcccccccceeeecccc--------ccc----ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc
Confidence            333455789999998642        111    11234566888999999887642222334566666654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.54  E-value=7.9e-08  Score=79.98  Aligned_cols=134  Identities=16%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------CCCCeEEecCCCCChhHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------IDGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------~~~~~~~~~~D~~~~~~~~~i  128 (229)
                      .+++.+|||.|||+|++...+..++...    .....+++|+|+++ +..         ....... .+|....      
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~----~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~-~~d~~~~------  183 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELK----GDVDVHASGVDVDDLLISLALVGADLQRQKMTLL-HQDGLAN------  183 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTT----SSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEE-ESCTTSC------
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhc----cCccceEEEecccHHHHHHHHHHHHHhhhhhhhh-ccccccc------
Confidence            3567899999999999999988776411    01234799999987 111         1234455 5665431      


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHH---------HHHHHHHHHHHHHcccCCCEEEEee----cCCCChHHHHH
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLI---------TQLAIAVIRFAVTYSKPGADCLIKI----WDGRNRPQLEE  195 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~---------~~~~~~~l~~~~~~LkpgG~~v~~~----~~~~~~~~~~~  195 (229)
                         ....+||+|++|++......  .+....         ...-...+..+.+.|+|||++++-+    +.......+++
T Consensus       184 ---~~~~~fD~vi~NPPy~~~~~--~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~  258 (328)
T d2f8la1         184 ---LLVDPVDVVISDLPVGYYPD--DENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDK  258 (328)
T ss_dssp             ---CCCCCEEEEEEECCCSEESC--HHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHH
T ss_pred             ---cccccccccccCCCCCCCcc--chhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHH
Confidence               34568999999987521110  000000         0011236777999999999987755    33455677787


Q ss_pred             HHHhhCCeeEEEc
Q psy1489         196 SITRFYSQVKILK  208 (229)
Q Consensus       196 ~l~~~F~~v~~~k  208 (229)
                      .+...+.-..+..
T Consensus       259 ~L~~~~~i~~ii~  271 (328)
T d2f8la1         259 FIKKNGHIEGIIK  271 (328)
T ss_dssp             HHHHHEEEEEEEE
T ss_pred             HHHhCCcEEEEEE
Confidence            7766654443443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.7e-08  Score=76.60  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=69.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ..++||++|||+|.-+..+++.+.        ++++|+.+|.++.           ... ..++++ .+|..+.  ...+
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~--------~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~-~Gda~e~--l~~~  127 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALP--------ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR-LKPALET--LDEL  127 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSC--------TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEE-ESCHHHH--HHHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCC--------CCceEEEEeechhHHHHHHHHHHhcCccceEEEE-Eeehhhc--chhh
Confidence            458999999999999999998764        5689999999972           112 346677 7775542  2222


Q ss_pred             HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ........||+|+.|....        .      ....+..+.++|+|||.+++.
T Consensus       128 ~~~~~~~~fD~ifiD~dk~--------~------y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         128 LAAGEAGTFDVAVVDADKE--------N------CSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             HHTTCTTCEEEEEECSCST--------T------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcccCCccEEEEeCCHH--------H------HHHHHHHHHHHhcCCcEEEEe
Confidence            2223456899999987531        1      123456678899999999874

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.51  E-value=1.7e-07  Score=75.05  Aligned_cols=94  Identities=12%  Similarity=0.169  Sum_probs=70.1

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      ....+|||+|||+|.++..++++.         |..+++..|+-+.    ....+++++ .+|+.++         .  .
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dlp~vi~~~~~~~rv~~~-~gD~f~~---------~--p  137 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETF---------PKLKCIVFDRPQVVENLSGSNNLTYV-GGDMFTS---------I--P  137 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC---------TTCEEEEEECHHHHTTCCCBTTEEEE-ECCTTTC---------C--C
T ss_pred             cCceEEEEecCCccHHHHHHHHhC---------CCCeEEEecCHHHHHhCcccCceEEE-ecCcccC---------C--C
Confidence            344789999999999999999987         7789999998641    224578899 9998763         2  2


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC---CEEEEe
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG---ADCLIK  183 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg---G~~v~~  183 (229)
                      .+|+++....     .++++.    +.+..+|+.+.+.|+||   |++++.
T Consensus       138 ~aD~~~l~~v-----LHdw~d----~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         138 NADAVLLKYI-----LHNWTD----KDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             CCSEEEEESC-----GGGSCH----HHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             CCcEEEEEee-----cccCCh----HHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            5799987443     233333    45678899999999998   666553

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.40  E-value=6.1e-07  Score=72.97  Aligned_cols=137  Identities=14%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------------CCCCCeEEecCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------------PIDGAVVLSKCD  118 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------------~~~~~~~~~~~D  118 (229)
                      ++..+||.||+|.|+.+..+++.          +..+|+.||+++. .                    ..++++++ .+|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~----------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~-~~D  139 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH----------DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT-IGD  139 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS----------CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE-ESC
T ss_pred             CCCceEEEecCCchHHHHHHHHh----------CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEE-ECh
Confidence            45689999999999998887653          3468999999961 0                    12456777 776


Q ss_pred             CCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHH
Q psy1489         119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLE  194 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~  194 (229)
                      ...     .+.+   .++||+|+.|..... +.  ....    .....++.+.+.|+|||.+++......    ....+.
T Consensus       140 a~~-----~l~~---~~~yDvIi~D~~~~~-~~--~~~L----~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~  204 (276)
T d1mjfa_         140 GFE-----FIKN---NRGFDVIIADSTDPV-GP--AKVL----FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAY  204 (276)
T ss_dssp             HHH-----HHHH---CCCEEEEEEECCCCC--------T----TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHH
T ss_pred             HHH-----HHhc---cCCCCEEEEeCCCCC-CC--cccc----cCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHH
Confidence            543     2322   568999999986321 11  0010    123678889999999999988653322    234556


Q ss_pred             HHHHhhCCeeEEEc-CCCCCCCCceEEEEe
Q psy1489         195 ESITRFYSQVKILK-PPSSRSHSAELFLLG  223 (229)
Q Consensus       195 ~~l~~~F~~v~~~k-p~~sr~~s~E~Y~v~  223 (229)
                      ..++..|..|..+. |..+=. +.-.+++|
T Consensus       205 ~tl~~~F~~v~~y~~~vP~y~-~~w~f~~a  233 (276)
T d1mjfa_         205 KEMKKVFDRVYYYSFPVIGYA-SPWAFLVG  233 (276)
T ss_dssp             HHHHHHCSEEEEEEECCTTSS-SSEEEEEE
T ss_pred             HHHHhhCCeeEEEEecCcCCC-CceEEEEE
Confidence            77778899888765 222222 33466665

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.30  E-value=1.3e-07  Score=72.42  Aligned_cols=98  Identities=19%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC--CCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID--GAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~--~~~~~~~~D~~~~~~~~~  127 (229)
                      .+.+||||.||+|.++..++.+          ++.+|+.||.+.-           ....  ...+. ..|..+     .
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR----------GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~-~~d~~~-----~  106 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR----------QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI-NQSSLD-----F  106 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT----------TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEE-CSCHHH-----H
T ss_pred             ccceEeecccCccceeeeeeee----------cceeeEEeecccchhhhHhhHHhhhcccccccccc-cccccc-----c
Confidence            5789999999999999998877          4569999999861           0111  23333 343211     1


Q ss_pred             HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeecC
Q psy1489         128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIWD  186 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~~  186 (229)
                      +.......+||+|++|++...      +.      ...++..+  ..+|+++|.++++.-.
T Consensus       107 l~~~~~~~~fDlIFlDPPY~~------~~------~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         107 LKQPQNQPHFDVVFLDPPFHF------NL------AEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             TTSCCSSCCEEEEEECCCSSS------CH------HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ccccccCCcccEEEechhHhh------hh------HHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            111123457999999987521      11      11223333  3579999999987643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=5.4e-07  Score=74.52  Aligned_cols=128  Identities=16%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C---------------CCCCCeEEecCCCCChh
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y---------------PIDGAVVLSKCDFTQPD  123 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~---------------~~~~~~~~~~~D~~~~~  123 (229)
                      +..++||.||.|.|+.+..+++..         +..+|+.||+++. .               .-++++++ .+|..+. 
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~---------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~-~~Da~~~-  144 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHP---------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV-IDDARAY-  144 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST---------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE-ESCHHHH-
T ss_pred             CCcceEEEeCCCchHHHHHHHhcC---------CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEE-EchHHHH-
Confidence            345799999999999988877653         4579999999971 0               12457777 7775541 


Q ss_pred             HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec----CCCCh-HHHHHHHH
Q psy1489         124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW----DGRNR-PQLEESIT  198 (229)
Q Consensus       124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~----~~~~~-~~~~~~l~  198 (229)
                          +.+  .+++||+|+.|..............    .....++.+.+.|+|||.|++..-    ..... ..+...++
T Consensus       145 ----l~~--~~~~yDvIi~D~~dp~~~~~~~~~L----~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~  214 (312)
T d1uira_         145 ----LER--TEERYDVVIIDLTDPVGEDNPARLL----YTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR  214 (312)
T ss_dssp             ----HHH--CCCCEEEEEEECCCCBSTTCGGGGG----SSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred             ----hhh--cCCcccEEEEeCCCcccccchhhhh----hhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHH
Confidence                222  3568999999885311111001010    013567889999999999987542    12233 34557788


Q ss_pred             hhCCeeEEEc
Q psy1489         199 RFYSQVKILK  208 (229)
Q Consensus       199 ~~F~~v~~~k  208 (229)
                      ..|..|..+.
T Consensus       215 ~~F~~V~~y~  224 (312)
T d1uira_         215 EAFRYVRSYK  224 (312)
T ss_dssp             TTCSEEEEEE
T ss_pred             HhCceEEEEE
Confidence            8899888764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.29  E-value=5.7e-07  Score=71.06  Aligned_cols=98  Identities=11%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      ...+||++|++.|.-+..+++-++        ++++|+.+|.++. .          .. ..++++ .+|..+  ....+
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~--------~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~-~g~a~~--~L~~l  127 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIP--------EDGKILAMDINKENYELGLPVIKKAGVDHKIDFR-EGPALP--VLDEM  127 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSC--------TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEE-ESCHHH--HHHHH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCC--------CCcEEEEEeccchhHHHHHHHHHHhccccceeee-ehHHHH--HHHHH
Confidence            457999999999999999998875        5789999999972 0          11 246677 776543  22222


Q ss_pred             HHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         129 VTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       129 ~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      ... ...++||+|+.|+...        .      ....+..+.++|+|||.+++.
T Consensus       128 ~~~~~~~~~fD~iFiDa~k~--------~------y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         128 IKDEKNHGSYDFIFVDADKD--------N------YLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHCGGGTTCBSEEEECSCST--------T------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             HhccccCCceeEEEeccchh--------h------hHHHHHHHHhhcCCCcEEEEc
Confidence            111 1245799999998531        1      224566678899999999875

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.9e-06  Score=66.96  Aligned_cols=105  Identities=12%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      ++.+|+|+|+|.|.=+..+|-..         |+.+++.+|.+.  .         ..+.+++++ ..++.+.       
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~---------p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~-~~R~E~~-------  127 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR---------PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPV-QSRVEEF-------  127 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC---------TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEE-ECCTTTS-------
T ss_pred             cCCceeeeeccCCceeeehhhhc---------ccceEEEEecchHHHHHHHHHHHHcCCcceeee-ccchhhh-------
Confidence            45799999999999999988764         788999999984  1         245688888 7877762       


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY  201 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F  201 (229)
                        ..+.+||+|+|-+..      .         ...++..+..+++++|.+++  +.+....+=+..+...|
T Consensus       128 --~~~~~fD~V~sRA~~------~---------~~~ll~~~~~~l~~~g~~~~--~KG~~~~eEl~~~~~~~  180 (207)
T d1jsxa_         128 --PSEPPFDGVISRAFA------S---------LNDMVSWCHHLPGEQGRFYA--LKGQMPEDEIALLPEEY  180 (207)
T ss_dssp             --CCCSCEEEEECSCSS------S---------HHHHHHHHTTSEEEEEEEEE--EESSCCHHHHHTSCTTE
T ss_pred             --ccccccceehhhhhc------C---------HHHHHHHHHHhcCCCcEEEE--ECCCCHHHHHHhhhcCC
Confidence              234589999995531      1         23567788999999999875  34444333333333334

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.27  E-value=5.7e-07  Score=71.89  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.+++.|||+|||+|.+|..|++..           .+|+|||+++ +.        ..+++.++ .+|+.+.+      
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~-----------~~v~aIE~D~~l~~~l~~~~~~~~n~~ii-~~D~l~~~------   88 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKIS-----------KQVTSIELDSHLFNLSSEKLKLNTRVTLI-HQDILQFQ------   88 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-----------SEEEESSSSCSSSSSSSCTTTTCSEEEEC-CSCCTTTT------
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhc-----------CceeEeeecccchhhhhhhhhhccchhhh-hhhhhccc------
Confidence            4678999999999999999999873           5999999997 21        12468888 99998843      


Q ss_pred             HHhCCCCccEEEeCCCCC
Q psy1489         130 TILKDDKLDVVLSDMAPN  147 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~  147 (229)
                        ++...++.|+++.+.+
T Consensus        89 --~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          89 --FPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             --CCCSSEEEEEEECCSS
T ss_pred             --cccceeeeEeeeeehh
Confidence              4556778899988753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=3.6e-06  Score=68.18  Aligned_cols=125  Identities=12%  Similarity=0.008  Sum_probs=84.7

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------------CCCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------------YPIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------------~~~~~~~~~~~~D~~~~~~  124 (229)
                      ++..+||-||-|.|+.+..++++.         +..+|+.||+++.               ..-++++++ .+|....  
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~---------~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~-~~D~~~~--  141 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHP---------SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ-VDDGFMH--  141 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT---------TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE-ESCSHHH--
T ss_pred             CCcceEEecCCCCcHHHHHHHhcC---------CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEE-echHHHH--
Confidence            345899999999999998887653         4569999999971               023467777 7776541  


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~  200 (229)
                         +.  -.+++||+|+.|..... +...  +.    .....++.+.+.|+|||.|++......    ....+...++..
T Consensus       142 ---l~--~~~~~yDvIi~D~~~p~-~~~~--~L----~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~  209 (274)
T d1iy9a_         142 ---IA--KSENQYDVIMVDSTEPV-GPAV--NL----FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (274)
T ss_dssp             ---HH--TCCSCEEEEEESCSSCC-SCCC--CC----STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             ---Hh--hcCCCCCEEEEcCCCCC-Ccch--hh----ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence               22  23568999999975321 2111  00    013567789999999999987643221    134566777888


Q ss_pred             CCeeEEEc
Q psy1489         201 YSQVKILK  208 (229)
Q Consensus       201 F~~v~~~k  208 (229)
                      |..|..+.
T Consensus       210 F~~v~~y~  217 (274)
T d1iy9a_         210 FPITKLYT  217 (274)
T ss_dssp             CSEEEEEE
T ss_pred             cCceEEEE
Confidence            99887765

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.10  E-value=6.7e-06  Score=64.89  Aligned_cols=124  Identities=11%  Similarity=0.048  Sum_probs=76.7

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      ..+||++|++.|+-+..++..+...     ++.++|+|+|+.+-      ...+++.++ ++|..+.....    .+.+.
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~-----~~~~kI~giDId~~~~~~~~~~~~~I~~i-~gDs~~~~~~~----~l~~~  150 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIM-----GIDCQVIGIDRDLSRCQIPASDMENITLH-QGDCSDLTTFE----HLREM  150 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHT-----TCCCEEEEEESCCTTCCCCGGGCTTEEEE-ECCSSCSGGGG----GGSSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhc-----CCCceEEecCcChhhhhhhhccccceeee-ecccccHHHHH----HHHhc
Confidence            4799999999998776666543100     15789999999761      123578899 99988866432    34456


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHHHHHhhCCeeEEEc
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEESITRFYSQVKILK  208 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~~l~~~F~~v~~~k  208 (229)
                      .+|+|+.|...      ..++      ....+. ...+|++||.+++.-..    ......+.+.+..+-..+.+..
T Consensus       151 ~~dlIfID~~H------~~~~------v~~~~~-~~~lLk~GG~iIveD~i~~~~~~~~~~~~e~~~~~~~~~~~d~  214 (232)
T d2bm8a1         151 AHPLIFIDNAH------ANTF------NIMKWA-VDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDM  214 (232)
T ss_dssp             CSSEEEEESSC------SSHH------HHHHHH-HHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEET
T ss_pred             CCCEEEEcCCc------chHH------HHHHHH-HhcccCcCCEEEEEcCCccccccCchHHHHHHhhhccEEEeeh
Confidence            78999998742      2222      111222 34789999999885321    1122334455555545555443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5e-06  Score=67.69  Aligned_cols=142  Identities=13%  Similarity=0.015  Sum_probs=89.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~  124 (229)
                      +..++||-||-|.|+.+..+++..         +..+|+.||+++. .              .-++++++ .+|...   
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~---------~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~-~~Da~~---  143 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHP---------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH-VGDGFE---  143 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHH---
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcC---------CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEE-EccHHH---
Confidence            345899999999999998887653         4569999999961 0              12567777 777443   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-C---hHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-N---RPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~---~~~~~~~l~~~  200 (229)
                        .+.  -..++||+|++|..... +.  ..+.    .....++.+.+.|+|||.+++...... .   ...+...++..
T Consensus       144 --~l~--~~~~~yDvIi~D~~~p~-~~--~~~L----~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~  212 (285)
T d2o07a1         144 --FMK--QNQDAFDVIITDSSDPM-GP--AESL----FKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL  212 (285)
T ss_dssp             --HHH--TCSSCEEEEEEECC------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH
T ss_pred             --HHh--cCCCCCCEEEEcCCCCC-Cc--cccc----ccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc
Confidence              122  13568999999975311 11  1110    123678889999999999998654322 2   34455677778


Q ss_pred             CCeeEEEcC-CCCCCCCceEEEEecc
Q psy1489         201 YSQVKILKP-PSSRSHSAELFLLGRG  225 (229)
Q Consensus       201 F~~v~~~kp-~~sr~~s~E~Y~v~~~  225 (229)
                      |..|..+.. ..+-++..-.|++|-+
T Consensus       213 F~~v~~y~~~vP~~~~g~w~f~~aSk  238 (285)
T d2o07a1         213 FPVVAYAYCTIPTYPSGQIGFMLCSK  238 (285)
T ss_dssp             CSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             CCeeeEEeeeeeecCCCCeEEEEEEC
Confidence            988876542 2233333345677753

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.04  E-value=5.7e-06  Score=68.05  Aligned_cols=125  Identities=13%  Similarity=0.040  Sum_probs=80.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--------CC-------CCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--------YP-------IDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--------~~-------~~~~~~~~~~D~~~~~~  124 (229)
                      +...+||-||-|.|+.+..+++..         +..+|+.||+++.        .+       -++++++ .+|...   
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~---------~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~-i~Da~~---  171 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHE---------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF-CGDGFE---  171 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT---------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE-CSCHHH---
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcC---------CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEE-EchHHH---
Confidence            345799999999999998887653         4469999999861        01       2456777 666443   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~  200 (229)
                        .+..  ..++||+|+.|.... .+.  ...    -.....++.+.+.|+|||.+++..-...    ....+...++..
T Consensus       172 --~l~~--~~~~yDvII~D~~dp-~~~--~~~----L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v  240 (312)
T d2b2ca1         172 --FLKN--HKNEFDVIITDSSDP-VGP--AES----LFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI  240 (312)
T ss_dssp             --HHHH--CTTCEEEEEECCC--------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             --HHHh--CCCCCCEEEEcCCCC-CCc--chh----hhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc
Confidence              2322  357899999998631 111  111    1124678889999999999998543221    134466677778


Q ss_pred             CCeeEEEc
Q psy1489         201 YSQVKILK  208 (229)
Q Consensus       201 F~~v~~~k  208 (229)
                      |..|..+.
T Consensus       241 F~~v~~y~  248 (312)
T d2b2ca1         241 FPAVTYAQ  248 (312)
T ss_dssp             CSEEEEEE
T ss_pred             cceEEEee
Confidence            98887765

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=2.8e-06  Score=69.46  Aligned_cols=125  Identities=12%  Similarity=0.037  Sum_probs=81.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDIQ  125 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~~  125 (229)
                      ...+||-||.|.|+.+..+++..         +..+|++||+++. .              .-++++++ .+|...    
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~---------~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~-~~Da~~----  154 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHD---------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV-IANGAE----  154 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST---------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHH----
T ss_pred             CCceEEEecCCchHHHHHHHhcC---------CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEE-hhhHHH----
Confidence            45799999999999988877653         4568999999971 0              12567777 776443    


Q ss_pred             HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhhC
Q psy1489         126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRFY  201 (229)
Q Consensus       126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~F  201 (229)
                       .+.  -.+++||+|+.|......+..  ..    -.....++.+.+.|+|||.+++......    ....+...++..|
T Consensus       155 -~l~--~~~~~yDvIi~D~~dp~~~~~--~~----L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF  225 (295)
T d1inla_         155 -YVR--KFKNEFDVIIIDSTDPTAGQG--GH----LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF  225 (295)
T ss_dssp             -HGG--GCSSCEEEEEEEC----------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred             -HHh--cCCCCCCEEEEcCCCCCcCch--hh----hccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhc
Confidence             122  125689999999753111100  00    0124678889999999999988653321    2345667778889


Q ss_pred             CeeEEEc
Q psy1489         202 SQVKILK  208 (229)
Q Consensus       202 ~~v~~~k  208 (229)
                      ..|..+.
T Consensus       226 ~~v~~y~  232 (295)
T d1inla_         226 PITRVYL  232 (295)
T ss_dssp             SEEEEEE
T ss_pred             ceeEEEE
Confidence            8887765

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.01  E-value=3.2e-06  Score=66.98  Aligned_cols=68  Identities=15%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.++++|||+|||+|.+|..+++..           .+|+|||+++ +        ...+++.++ .+|+.+.+      
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~~-----------~~v~avE~D~~l~~~l~~~~~~~~n~~i~-~~D~l~~~------   80 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQRC-----------NFVTAIEIDHKLCKTTENKLVDHDNFQVL-NKDILQFK------   80 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-----------SEEEEECSCHHHHHHHHHHTTTCCSEEEE-CCCGGGCC------
T ss_pred             CCCCCeEEEECCCchHHHHHHHhCc-----------CceEEEeeccchHHHHHHHhhcccchhhh-hhhhhhcc------
Confidence            4689999999999999999999863           5899999986 2        134678999 99987632      


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                        ++......|++|.+.
T Consensus        81 --~~~~~~~~vv~NLPY   95 (235)
T d1qama_          81 --FPKNQSYKIFGNIPY   95 (235)
T ss_dssp             --CCSSCCCEEEEECCG
T ss_pred             --ccccccceeeeeehh
Confidence              333445578898764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=5.6e-06  Score=67.55  Aligned_cols=124  Identities=10%  Similarity=0.016  Sum_probs=81.8

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhH
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDI  124 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~  124 (229)
                      +...+||-||-|.|+.+..+++..         +..+|+.||+++. .              .-++++++ .+|...   
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~---------~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~-~~Da~~---  145 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHA---------SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLV-IGDGVA---  145 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT---------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEE-ESCHHH---
T ss_pred             CCCcceEEecCCchHHHHHHHhcc---------cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEE-EccHHH---
Confidence            345799999999999998887753         4468999999961 0              12466777 676433   


Q ss_pred             HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-C---hHHHHHHHHhh
Q psy1489         125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-N---RPQLEESITRF  200 (229)
Q Consensus       125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~---~~~~~~~l~~~  200 (229)
                        .+ ....+++||+|+.|... ..+.  ..+.    .....++.+.+.|+|||.+++...... +   ...+...++..
T Consensus       146 --~l-~~~~~~~yDvIi~D~~d-p~~~--~~~L----~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v  215 (290)
T d1xj5a_         146 --FL-KNAAEGSYDAVIVDSSD-PIGP--AKEL----FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREI  215 (290)
T ss_dssp             --HH-HTSCTTCEEEEEECCCC-TTSG--GGGG----GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             --HH-hhccccCccEEEEcCCC-CCCc--chhh----CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhh
Confidence              12 22345689999999863 1121  1111    123578889999999999998654322 2   34466777777


Q ss_pred             CCeeEE
Q psy1489         201 YSQVKI  206 (229)
Q Consensus       201 F~~v~~  206 (229)
                      |..+..
T Consensus       216 F~~~~~  221 (290)
T d1xj5a_         216 FKGSVN  221 (290)
T ss_dssp             CSSCEE
T ss_pred             ccccee
Confidence            876643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=7.4e-06  Score=68.44  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=52.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ..++.+||||.||.|.++..|++..           .+|+|+|.++.           ..+.++.++ .+|..+.-..  
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~-----------~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~-~~~~~~~~~~--  275 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA-----------ASVVGVEGVPALVEKGQQNARLNGLQNVTFY-HENLEEDVTK--  275 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS-----------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEE-ECCTTSCCSS--
T ss_pred             cCCCceEEEecccccccchhccccc-----------cEEEeccCcHHHHHHHHHhHHhcccccceee-ecchhhhhhh--
Confidence            4567899999999999999998754           59999999861           246778888 8877652100  


Q ss_pred             HHHHhCCCCccEEEeCCC
Q psy1489         128 LVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~  145 (229)
                        .......+|+|+.|++
T Consensus       276 --~~~~~~~~d~vilDPP  291 (358)
T d1uwva2         276 --QPWAKNGFDKVLLDPA  291 (358)
T ss_dssp             --SGGGTTCCSEEEECCC
T ss_pred             --hhhhhccCceEEeCCC
Confidence              0122467999999986

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.81  E-value=5.7e-06  Score=63.45  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=28.7

Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      .+.||+|+|-...         .+...+...+++....+.|+|||.|++
T Consensus       130 ~~~fDvI~CRNVL---------iYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         130 PGPFDAIFCRNVM---------IYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             CCCEEEEEECSSG---------GGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCccEEEeehhH---------HhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            4679999994422         111124456889999999999998876

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.78  E-value=2.8e-05  Score=66.48  Aligned_cols=133  Identities=12%  Similarity=0.154  Sum_probs=76.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCC----CCcEEEEEeCCCC-----------C--CCCCCeEEecCCCCC
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQ----PKGLVLSVDKLPI-----------Y--PIDGAVVLSKCDFTQ  121 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~----~~~~v~gvD~~~~-----------~--~~~~~~~~~~~D~~~  121 (229)
                      ..++.+|+|-+||+|++...+.+++.........    ....++|+|+++.           .  ........ .+|..+
T Consensus       160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~-~~d~l~  238 (425)
T d2okca1         160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV-CEDSLE  238 (425)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE-ECCTTT
T ss_pred             CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceee-cCchhh
Confidence            3467899999999999999988877421110000    0124899999861           0  11233445 566554


Q ss_pred             hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccH--H----HHHHHHHHHHHHHHHcccCCCEEEEeec-----CCCCh
Q psy1489         122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDH--D----LITQLAIAVIRFAVTYSKPGADCLIKIW-----DGRNR  190 (229)
Q Consensus       122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~--~----~~~~~~~~~l~~~~~~LkpgG~~v~~~~-----~~~~~  190 (229)
                      .         .+...||+|++|++.........+.  .    .....-...+..+.+.|++||++++.+.     .+...
T Consensus       239 ~---------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~  309 (425)
T d2okca1         239 K---------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAG  309 (425)
T ss_dssp             S---------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHH
T ss_pred             h---------hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhH
Confidence            2         3356899999999863221110000  0    0000112366778899999999877552     23334


Q ss_pred             HHHHHHHHhhC
Q psy1489         191 PQLEESITRFY  201 (229)
Q Consensus       191 ~~~~~~l~~~F  201 (229)
                      ..+++.|-..+
T Consensus       310 ~~iR~~Ll~~~  320 (425)
T d2okca1         310 ETIRKRLLQDF  320 (425)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHhc
Confidence            56776665544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.65  E-value=3.6e-05  Score=58.89  Aligned_cols=110  Identities=17%  Similarity=0.270  Sum_probs=68.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||.+|||| |..+..+++..         ...+|+++|.++-    ..-.++...  -+-.+.+..+.+.+...
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~---------ga~~Vi~~d~~~~rl~~a~~~Ga~~~--~~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLL---------GAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLG   91 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT---------TCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhh---------cccceeeecccchhhHhhhhccccEE--EeCCCcCHHHHHHHHhC
Confidence            68999999999999 55666666665         3569999999861    111234433  23334445556666677


Q ss_pred             CCCccEEEeCCCCCCCC--CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         134 DDKLDVVLSDMAPNATG--MREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g--~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +..+|+++-.......+  ....+.    ......++.+.+.++|||++++.
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~----~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKH----EAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGS----BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEEECccccccCCcccceee----cCcHHHHHHHHHHHhcCCEEEEe
Confidence            77899999643211111  000000    00124678899999999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.65  E-value=0.00015  Score=53.57  Aligned_cols=99  Identities=24%  Similarity=0.299  Sum_probs=60.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCC--CCh-hHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDF--TQP-DIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~--~~~-~~~~~i~  129 (229)
                      +++|++||-+|||+ |.++..+++..+          ++|+++|.++..    .--++ ..+ ..+-  .+. .....+.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G----------a~vi~v~~~~~r~~~a~~~ga~~~~-~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYG----------AFVVCTARSPRRLEVAKNCGADVTL-VVDPAKEEESSIIERIR   92 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHTTCSEEE-ECCTTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhc----------ccccccchHHHHHHHHHHcCCcEEE-eccccccccchhhhhhh
Confidence            57899999999998 666666776653          699999998611    00122 112 1221  122 2223333


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      + ..+..+|+|+-..     |.            ...+..+.+.|+|+|++++.-..
T Consensus        93 ~-~~g~g~D~vid~~-----g~------------~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          93 S-AIGDLPNVTIDCS-----GN------------EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             H-HSSSCCSEEEECS-----CC------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             c-ccccCCceeeecC-----CC------------hHHHHHHHHHHhcCCceEEEecC
Confidence            3 3356799998632     11            13567788999999999875433

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=4.9e-05  Score=57.18  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|||| |.++..+++..|         ..+|+++|.++.  +.  --++ .++...+-...+..+.+.+..
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G---------a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLG---------AENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT---------BSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccc---------cccccccccccccccccccccceEEEeccccchHHHHHHHHHhh
Confidence            67899999999988 777788887764         248999999861  10  0122 233011111122334455555


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+|+|+-..     |..            ..+..+.+.|++||++++.-
T Consensus        97 ~~~g~Dvvid~v-----G~~------------~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          97 HGRGADFILEAT-----GDS------------RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             TTSCEEEEEECS-----SCT------------THHHHHHHHEEEEEEEEECC
T ss_pred             CCCCceEEeecC-----Cch------------hHHHHHHHHhcCCCEEEEEe
Confidence            566799998632     211            24566888999999998653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.56  E-value=2.1e-05  Score=59.15  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=65.6

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|||+ |..+..+++..+         ..+|+++|.++..  ..  -++ +++   |..+.+..+.+.+..
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G---------a~~Vi~~d~~~~r~~~a~~lGa~~~i---~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRG---------AGRIIGVGSRPICVEAAKFYGATDIL---NYKNGHIEDQVMKLT   92 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTT---------CSCEEEECCCHHHHHHHHHHTCSEEE---CGGGSCHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhccc---------ccccccccchhhhHHHHHhhCccccc---cccchhHHHHHHHHh
Confidence            67899999999998 777777777653         3479999998610  00  122 333   333334455566666


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .+..+|+|+-...     ..            ..+..+.+.|+|+|++++.-+.
T Consensus        93 ~g~G~D~vid~~g-----~~------------~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          93 NGKGVDRVIMAGG-----GS------------ETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TTSCEEEEEECSS-----CT------------THHHHHHHHEEEEEEEEECCCC
T ss_pred             hccCcceEEEccC-----CH------------HHHHHHHHHHhcCCEEEEEeec
Confidence            6677999987332     11            2456688899999999885443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00024  Score=52.67  Aligned_cols=101  Identities=24%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCChh-HHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQPD-IQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~~~-~~~~i~~~  131 (229)
                      +++|++||=+|||| |..+..+++..+         ..+|+++|.++.  .  .--+++ ++ ..+-.+.. ....+.. 
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G---------~~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~~~~~~~-   92 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMG---------AAQVVVTDLSATRLSKAKEIGADLVL-QISKESPQEIARKVEG-   92 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEEESCHHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHH-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcC---------CceEEeccCCHHHHHHHHHhCCcccc-cccccccccccccccc-
Confidence            57899999999999 555566666653         348999999861  1  011332 22 22222322 2222222 


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG  187 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~  187 (229)
                      ..+..+|+|+-..     |.            ...+..+.+.+++||++++--+..
T Consensus        93 ~~g~g~Dvvid~~-----G~------------~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          93 QLGCKPEVTIECT-----GA------------EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HHTSCCSEEEECS-----CC------------HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             cCCCCceEEEecc-----CC------------chhHHHHHHHhcCCCEEEEEecCC
Confidence            2356799998732     21            135677899999999998865443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=9.3e-05  Score=55.13  Aligned_cols=95  Identities=14%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-.|+ |+ |..+..+++..+          .+|++++.++-  ..  --++..+  -|..+.+..+.+.+..
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G----------~~vi~~~~~~~~~~~~~~~Ga~~v--i~~~~~~~~~~i~~~t   93 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYG----------LKILGTAGTEEGQKIVLQNGAHEV--FNHREVNYIDKIKKYV   93 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCSEE--EETTSTTHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccccccccccccccC----------cccccccccccccccccccCcccc--cccccccHHHHhhhhh
Confidence            678999999996 54 666677777654          68999987751  10  1133222  2455666666777777


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..+|+|+....                  ...+..+.+.|+|+|++++.
T Consensus        94 ~~~g~d~v~d~~g------------------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          94 GEKGIDIIIEMLA------------------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CTTCEEEEEESCH------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ccCCceEEeeccc------------------HHHHHHHHhccCCCCEEEEE
Confidence            7888999998331                  12456678899999999874

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.50  E-value=0.00015  Score=57.06  Aligned_cols=92  Identities=14%  Similarity=0.039  Sum_probs=65.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      .+.+++|+|+|.|.=+..++-..         |+.+++-+|.+.-           ..+.++.++ .+.+.+...     
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~---------p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~-~~R~E~~~~-----  134 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF---------PHLHVTIVDSLNKRITFLEKLSEALQLENTTFC-HDRAETFGQ-----  134 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC---------TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEE-ESCHHHHTT-----
T ss_pred             CCCeEEeecCCCchHHHHHHHhC---------CCccceeecchHHHHHHHHHHHHHhCCCCcEEE-eehhhhccc-----
Confidence            56799999999999999988765         6789999999851           135677777 554432100     


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ..-..+.||+|+|-+.-               .....+..+..++++||.+++
T Consensus       135 ~~~~~~~~D~v~sRAva---------------~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         135 RKDVRESYDIVTARAVA---------------RLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             CTTTTTCEEEEEEECCS---------------CHHHHHHHHGGGEEEEEEEEE
T ss_pred             cccccccceEEEEhhhh---------------CHHHHHHHHhhhcccCCEEEE
Confidence            00113579999996531               134577889999999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.49  E-value=0.00011  Score=54.95  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|||+ |.++..+++..+         ...|+.+|.++..    .--++ .++ ...-.+ +....+....
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~G---------a~~Vi~~d~~~~r~~~a~~~Ga~~~i-~~~~~~-~~~~~~~~~~   94 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAG---------ASRIIAIDINGEKFPKAKALGATDCL-NPRELD-KPVQDVITEL   94 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT---------CSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCS-SCHHHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhC---------CceeeeeccchHHHHHHHHhCCCccc-CCccch-hhhhhhHhhh
Confidence            67899999999999 777788887764         4589999998721    11122 233 111111 1222233334


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~~~  186 (229)
                      .++.+|+|+-..     |.            ...+..+.+.|++| |++++.-..
T Consensus        95 ~~~G~d~vie~~-----G~------------~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          95 TAGGVDYSLDCA-----GT------------AQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HTSCBSEEEESS-----CC------------HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hcCCCcEEEEec-----cc------------chHHHHHHHHhhcCCeEEEecCCC
Confidence            467899999732     21            24677899999997 999875443

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.00019  Score=62.83  Aligned_cols=133  Identities=14%  Similarity=0.151  Sum_probs=74.7

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCC---------CcEEEEEeCCCC-----------CCCC-----CCeE
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQP---------KGLVLSVDKLPI-----------YPID-----GAVV  113 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~---------~~~v~gvD~~~~-----------~~~~-----~~~~  113 (229)
                      ..++.+|+|-+||+|+|...+.+++..........         ...++|+|+++.           ....     +...
T Consensus       162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~  241 (524)
T d2ar0a1         162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI  241 (524)
T ss_dssp             CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred             CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchh
Confidence            45688999999999999988887764322111100         125899999861           0111     1122


Q ss_pred             EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCccc-----HHHHHHHHHHHHHHHHHcccCCCEEEEeec---
Q psy1489         114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD-----HDLITQLAIAVIRFAVTYSKPGADCLIKIW---  185 (229)
Q Consensus       114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~---  185 (229)
                      . .++....+       .....+||+|++|++..........     .....+  ...+..+.+.|+|||++++.+.   
T Consensus       242 ~-~~~~l~~d-------~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~--~~Fi~~~l~~Lk~gGr~aiIlP~~~  311 (524)
T d2ar0a1         242 R-LGNTLGSD-------GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNV  311 (524)
T ss_dssp             E-ESCTTSHH-------HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH--HHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             h-hhhhhhhc-------ccccccceeEEecCCccccccccchhhhcccccccc--HHHHHHHHHhccccCcEEEEEehHH
Confidence            2 34444321       1335689999999986321111100     000001  1366778899999999887552   


Q ss_pred             --CCCChHHHHHHHHhhC
Q psy1489         186 --DGRNRPQLEESITRFY  201 (229)
Q Consensus       186 --~~~~~~~~~~~l~~~F  201 (229)
                        .+.....+++.|-..+
T Consensus       312 Lf~~~~~~~iR~~Ll~~~  329 (524)
T d2ar0a1         312 LFEGGKGTDIRRDLMDKC  329 (524)
T ss_dssp             HHCCTHHHHHHHHHHHHE
T ss_pred             hhhhhhhHHHHHHHHHcC
Confidence              3333345666664443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.38  E-value=0.00015  Score=54.00  Aligned_cols=95  Identities=16%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|||+ |..+..+++..+         ..+|+.+|.++-  .   .+-..+++   |..+.+..+.+.+..
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g---------~~~v~~~~~~~~k~~~a~~~Ga~~~i---~~~~~~~~~~i~~~t   93 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCG---------ASIIIAVDIVESRLELAKQLGATHVI---NSKTQDPVAAIKEIT   93 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT---------CSEEEEEESCHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccc---------cceeeeeccHHHHHHHHHHcCCeEEE---eCCCcCHHHHHHHHc
Confidence            67899999999998 445666666664         457888898761  1   11122444   333444555666654


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                       ++.+|+|+-..     |.            ...+..+.+.++|+|++++.
T Consensus        94 -~gg~D~vid~~-----G~------------~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          94 -DGGVNFALEST-----GS------------PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             -TSCEEEEEECS-----CC------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             -CCCCcEEEEcC-----Cc------------HHHHHHHHhcccCceEEEEE
Confidence             45899999632     11            24566789999999999874

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00021  Score=57.54  Aligned_cols=66  Identities=20%  Similarity=0.245  Sum_probs=50.8

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C---CCCCeEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P---IDGAVVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~---~~~~~~~~~~D~~~~~~~~  126 (229)
                      +.+++.||++|+|+|.+|..|+++.           .+|++||+++ +.        .   ..+++++ .+|+...    
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-----------~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i-~~D~l~~----   82 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKA-----------KKVVACELDPRLVAELHKRVQGTPVASKLQVL-VGDVLKT----   82 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-----------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE-ESCTTTS----
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcC-----------CcEEEEEEccchhHHHHHHHhhhccccchhhh-HHHHhhh----
Confidence            4578999999999999999999873           5999999986 11        1   2367888 9998873    


Q ss_pred             HHHHHhCCCCccEEEeCCCC
Q psy1489         127 RLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       127 ~i~~~~~~~~~D~V~sd~~~  146 (229)
                            +-..++.|++|.+.
T Consensus        83 ------~~~~~~~vV~NLPY   96 (278)
T d1zq9a1          83 ------DLPFFDTCVANLPY   96 (278)
T ss_dssp             ------CCCCCSEEEEECCG
T ss_pred             ------hhhhhhhhhcchHH
Confidence                  22356789998764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00012  Score=58.10  Aligned_cols=73  Identities=5%  Similarity=0.058  Sum_probs=51.9

Q ss_pred             cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +.+++.||++|||+|.+|..|+++.           .+|++||+++ +        ...+++.++ .+|+.+.+......
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-----------~~v~aiEiD~~l~~~L~~~~~~~~~~~ii-~~D~l~~~~~~~~~   86 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL-----------DQLTVIELDRDLAARLQTHPFLGPKLTIY-QQDAMTFNFGELAE   86 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC-----------SCEEEECCCHHHHHHHHTCTTTGGGEEEE-CSCGGGCCHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC-----------CceEEEEeccchhHHHHHHhhhccchhHH-hhhhhhhccccccc
Confidence            4678999999999999999999763           5899999996 2        112468899 99988654333221


Q ss_pred             HHhCCCCccEEEeCCCC
Q psy1489         130 TILKDDKLDVVLSDMAP  146 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~  146 (229)
                      . . + ..-.|++|.+.
T Consensus        87 ~-~-~-~~~~vvgNlPY  100 (252)
T d1qyra_          87 K-M-G-QPLRVFGNLPY  100 (252)
T ss_dssp             H-H-T-SCEEEEEECCT
T ss_pred             c-c-C-CCeEEEecchH
Confidence            1 1 2 33477888765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.21  E-value=0.00017  Score=53.18  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=58.5

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |..+..+++..+          .+|+++|.++-  .  .--++ .++   |..+.+..+.+....
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G----------~~Vi~~~~~~~~~~~a~~~Ga~~~i---~~~~~~~~~~~~~~~   91 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMG----------LHVAAIDIDDAKLELARKLGASLTV---NARQEDPVEAIQRDI   91 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHHHTTCSEEE---ETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcC----------CccceecchhhHHHhhhccCccccc---cccchhHHHHHHHhh
Confidence            57899999999998 666677777653          69999999861  1  01122 233   233333344444333


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       .+.+|.|++...+                  ..+..+.+.|+|+|++++.-
T Consensus        92 -~g~~~~i~~~~~~------------------~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          92 -GGAHGVLVTAVSN------------------SAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             -SSEEEEEECCSCH------------------HHHHHHHTTEEEEEEEEECC
T ss_pred             -cCCcccccccccc------------------hHHHHHHHHhcCCcEEEEEE
Confidence             3445555553321                  34566889999999998743

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00068  Score=50.40  Aligned_cols=95  Identities=22%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=.|. |+ |.++..+++..+          .+|++++.++-  .  .-.++..+  -|..+.+..+.+.+..
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g----------~~vi~~~~~~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~t   90 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIG----------ARIYTTAGSDAKREMLSRLGVEYV--GDSRSVDFADEILELT   90 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHTTCCSEE--EETTCSTHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCcccccchhhcccc----------ccceeeeccccccccccccccccc--ccCCccCHHHHHHHHh
Confidence            678999999873 44 667777777765          68888876641  0  11233322  2445556666777777


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+..||+|+.....                  ..+..+.+.|+++|+++..
T Consensus        91 ~~~g~d~v~d~~g~------------------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          91 DGYGVDVVLNSLAG------------------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TTCCEEEEEECCCT------------------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCEEEEEecccc------------------hHHHHHHHHhcCCCEEEEE
Confidence            77889999984321                  2345577899999999873

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.02  E-value=0.0007  Score=50.04  Aligned_cols=98  Identities=13%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|+|+ |.++..+++..+         ..+|+++|.++-  .   ..-...++ ..  .+. ......+..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g---------~~~vv~~~~~~~k~~~~~~~ga~~~i-~~--~~~-~~~~~~~~~   96 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT---------PATVIALDVKEEKLKLAERLGADHVV-DA--RRD-PVKQVMELT   96 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC---------CCEEEEEESSHHHHHHHHHTTCSEEE-ET--TSC-HHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc---------CcccccccchhHHHHHHhhcccceee-cC--ccc-HHHHHHHhh
Confidence            57899999999999 555566676653         458899999861  1   12222344 22  222 223334445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      .+..+|+|+-....                 ...+..+.+.|++||++++.-+.
T Consensus        97 ~~~g~d~vid~~g~-----------------~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          97 RGRGVNVAMDFVGS-----------------QATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             TTCCEEEEEESSCC-----------------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred             CCCCceEEEEecCc-----------------chHHHHHHHHHhCCCEEEEEeCc
Confidence            56779999974421                 13567789999999999975443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.93  E-value=0.0013  Score=48.72  Aligned_cols=100  Identities=12%  Similarity=0.003  Sum_probs=58.1

Q ss_pred             cCCCCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||-+|||+.+ .+..+++..+         ..+|+++|.++-.    .--+++ ++ ...-.+. .........
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G---------~~~Vi~~d~~~~kl~~a~~lGa~~~i-~~~~~d~-~~~~~~~~~   93 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAG---------ASRIIGVGTHKDKFPKAIELGATECL-NPKDYDK-PIYEVICEK   93 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSS-CHHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC---------CceeeccCChHHHHHHHHHcCCcEEE-cCCCchh-HHHHHHHHh
Confidence            6899999999999954 5555666653         4689999998711    111322 33 1111111 112233334


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC-CCEEEEeecC
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP-GADCLIKIWD  186 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~~v~~~~~  186 (229)
                      .++.+|+|+-....                 ...+..+...+++ +|++++--+.
T Consensus        94 ~~~G~d~vid~~g~-----------------~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          94 TNGGVDYAVECAGR-----------------IETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             TTSCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             cCCCCcEEEEcCCC-----------------chHHHHHHHHHHHhcCceEEEEEe
Confidence            56689999974321                 1344556666655 5998875443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.93  E-value=0.00046  Score=50.57  Aligned_cols=96  Identities=16%  Similarity=0.079  Sum_probs=57.8

Q ss_pred             cCCCCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          59 LRPGLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +++|++||-.||||-+ .+..+++..+          .+|+++|.++..    .--++..+  .|..+.+....+.... 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g----------~~v~~~~~~~~r~~~~k~~Ga~~~--~~~~~~~~~~~~~~~~-   91 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMG----------LNVVAVDIGDEKLELAKELGADLV--VNPLKEDAAKFMKEKV-   91 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTT----------CEEEEECSCHHHHHHHHHTTCSEE--ECTTTSCHHHHHHHHH-
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCC----------CeEeccCCCHHHhhhhhhcCccee--cccccchhhhhccccc-
Confidence            6789999999999954 4455555543          589999987611    11233332  2333333444444433 


Q ss_pred             CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .+.+|+|+....                  ...+..+.+.|+|+|++++.-.
T Consensus        92 ~~~~~~v~~~~~------------------~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          92 GGVHAAVVTAVS------------------KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             SSEEEEEESSCC------------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEeecCC------------------HHHHHHHHHHhccCCceEeccc
Confidence            344555544221                  1346678899999999987543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.89  E-value=0.0004  Score=51.25  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||=+|| |+ |.++..+++..+         ...|+++|.++-  .  .--++ ..+   |..+.+..+.+.+.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g---------~~~V~~~~~~~~~~~~~~~~Ga~~~i---~~~~~~~~~~~~~~   92 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS---------GATIIGVDVREEAVEAAKRAGADYVI---NASMQDPLAEIRRI   92 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT---------CCEEEEEESSHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeecccccc---------cccccccccchhhHHHHHHcCCceee---ccCCcCHHHHHHHH
Confidence            578999999996 65 445566666553         458999998861  1  11122 333   23344445556665


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ..+..||+|+.....                 ...+..+.+.|+|||++++.-+.
T Consensus        93 ~~~~~~d~vid~~g~-----------------~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          93 TESKGVDAVIDLNNS-----------------EKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             TTTSCEEEEEESCCC-----------------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred             hhcccchhhhccccc-----------------chHHHhhhhhcccCCEEEEeccc
Confidence            667789999973321                 23456688999999999875443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00062  Score=50.49  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=.|+|.  |.++..+++..+          ++|++++.++-  +..  -++..+  -|..+.+..+.+.+..
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~G----------a~Vi~~~~s~~k~~~~~~lGa~~v--i~~~~~d~~~~v~~~t   93 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALG----------AKLIGTVGTAQKAQSALKAGAWQV--INYREEDLVERLKEIT   93 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHT----------CEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHT
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhC----------CeEeecccchHHHHHHHhcCCeEE--EECCCCCHHHHHHHHh
Confidence            67899999997776  567778888765          69999999871  111  123221  2555666667777777


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+..+|+|+.....                  ..+..+...|+++|++++..
T Consensus        94 ~g~g~d~v~d~~g~------------------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          94 GGKKVRVVYDSVGR------------------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             TTCCEEEEEECSCG------------------GGHHHHHHTEEEEEEEEECC
T ss_pred             CCCCeEEEEeCccH------------------HHHHHHHHHHhcCCeeeecc
Confidence            77889998874321                  13455788999999987643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.81  E-value=0.0016  Score=48.45  Aligned_cols=97  Identities=11%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             cCCCCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CCe-EEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GAV-VLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~~-~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||=+|||+.+ .+..+++..         ...+|+++|.++ ..++     ++. ++...|-.+  ....+.+.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~---------G~~~Vi~vd~~~-~kl~~Ak~~GA~~~in~~~~~~--~~~~~~~~   94 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSA---------GASRIIGIDLNK-DKFEKAMAVGATECISPKDSTK--PISEVLSE   94 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT---------TCSEEEEECSCG-GGHHHHHHHTCSEEECGGGCSS--CHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHc---------CCceEEEecCcH-HHHHHHHhcCCcEEECccccch--HHHHHHHH
Confidence            6789999999999944 555566655         346999999987 2211     222 330111111  12223333


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc-cCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS-KPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L-kpgG~~v~~~  184 (229)
                      ..+..+|+|+-....                 ...+..+...+ +++|++++.-
T Consensus        95 ~~g~G~d~vi~~~g~-----------------~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          95 MTGNNVGYTFEVIGH-----------------LETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HHTSCCCEEEECSCC-----------------HHHHHHHHTTSCTTTCEEEECS
T ss_pred             hccccceEEEEeCCc-----------------hHHHHHHHHHhhcCCeEEEEEE
Confidence            446789998874321                 12334455555 5559988754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0014  Score=48.22  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CC-eEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GA-VVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~-~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-+|+|+ |.++..+++..|          ++|+++|.++. .++     ++ .++...+-.+      ..+.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G----------~~vi~~~~~~~-k~~~a~~lGa~~~i~~~~~~~------~~~~   87 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMG----------AETYVISRSSR-KREDAMKMGADHYIATLEEGD------WGEK   87 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHT----------CEEEEEESSST-THHHHHHHTCSEEEEGGGTSC------HHHH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhcc----------ccccccccchh-HHHHhhccCCcEEeeccchHH------HHHh
Confidence            67899999999987 667777777664          68999999872 211     22 2220111111      1111


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      . .+.+|+|+.-...    ....           .+..+.+.|+|+|++++.-
T Consensus        88 ~-~~~~d~vi~~~~~----~~~~-----------~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          88 Y-FDTFDLIVVCASS----LTDI-----------DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             S-CSCEEEEEECCSC----STTC-----------CTTTGGGGEEEEEEEEECC
T ss_pred             h-hcccceEEEEecC----Cccc-----------hHHHHHHHhhccceEEEec
Confidence            2 4579988863211    0000           1234788999999998753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.52  E-value=0.0045  Score=45.37  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=57.9

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=.|||+ |.++..+++..+         ...|+++|.++-.     .+-...++ ..+-.+.+....+. ..
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G---------~~~vi~~~~~~~k~~~ak~lGa~~~i-~~~~~~~~~~~~~~-~~   94 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAG---------ASRIIGVDINKDKFARAKEFGATECI-NPQDFSKPIQEVLI-EM   94 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT---------CSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHHH-HH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHh---------cCceEEEcccHHHHHHHHHhCCcEEE-eCCchhhHHHHHHH-HH
Confidence            68999999999987 445666677663         4689999988621     01112233 11101111222233 34


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .++.+|+|+-....                 ...+..+..++++||.+++-
T Consensus        95 ~~~g~D~vid~~G~-----------------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          95 TDGGVDYSFECIGN-----------------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             TTSCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEEE
T ss_pred             cCCCCcEeeecCCC-----------------HHHHHHHHHhhcCCceeEEE
Confidence            45679999974321                 13456688889999887653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.26  E-value=0.0083  Score=44.00  Aligned_cols=97  Identities=11%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             cCCCCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489          59 LRPGLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +++|++||=+|+|+++ .+..+++..         ...+|+++|.++-.    .-.++ ..+  ......+.........
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~---------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i--~~~~~~~~~~~~~~~~   94 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAA---------GAARIIGVDINKDKFAKAKEVGATECV--NPQDYKKPIQEVLTEM   94 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT---------TCSEEEEECSCGGGHHHHHHTTCSEEE--CGGGCSSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHc---------CCceEEeecCcHHHHHHHHHhCCeeEE--ecCCchhHHHHHHHHH
Confidence            6899999999998855 444445554         34699999998721    11122 222  1111112222333445


Q ss_pred             CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489         133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK  183 (229)
Q Consensus       133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~  183 (229)
                      .++.+|+|+-....                 ...+..+...++++ |.+++-
T Consensus        95 ~~~G~D~vid~~G~-----------------~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          95 SNGGVDFSFEVIGR-----------------LDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             TTSCBSEEEECSCC-----------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             hcCCCCEEEecCCc-----------------hhHHHHHHHHHhcCCcceEEe
Confidence            56789999974321                 12345577788887 455543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.20  E-value=0.0017  Score=54.18  Aligned_cols=92  Identities=15%  Similarity=-0.021  Sum_probs=60.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---------CCCC---------------CeEE
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---------PIDG---------------AVVL  114 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---------~~~~---------------~~~~  114 (229)
                      .+.+|||..||+|..++..+...         +...|+++|+++.  .         ...+               +.+.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~---------~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~  115 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALET---------PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVIN  115 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHS---------SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEE
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC---------CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEee
Confidence            46799999999999999877765         3458999999961  0         1111               1122


Q ss_pred             ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                       +.|...     .+.  ...+.||+|..|+.    |-           +...|+.|.+.++.||.+.+..
T Consensus       116 -~~Da~~-----~~~--~~~~~fDvIDiDPf----Gs-----------~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         116 -HDDANR-----LMA--ERHRYFHFIDLDPF----GS-----------PMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             -ESCHHH-----HHH--HSTTCEEEEEECCS----SC-----------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -hhhhhh-----hhH--hhcCcCCcccCCCC----CC-----------cHHHHHHHHHHhccCCEEEEEe
Confidence             333211     111  23567999999863    21           1246677889999999988754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.97  E-value=0.0049  Score=45.65  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||=.|++.  |..+..+++..+          ++|++++.++-     ...-.-+++   |..+.+..+.+.+.
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~G----------a~vi~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~~~~~   93 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKG----------CKVVGAAGSDEKIAYLKQIGFDAAF---NYKTVNSLEEALKK   93 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTT----------CEEEEEESSHHHHHHHHHTTCSEEE---ETTSCSCHHHHHHH
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccC----------CEEEEeCCCHHHHHHHHhhhhhhhc---ccccccHHHHHHHH
Confidence            67899999888876  456677777764          69999987751     011112223   22233333344445


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .....+|+|+-...                  ...+..+.+.|+++|++++.
T Consensus        94 ~~~~Gvd~v~D~vG------------------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          94 ASPDGYDCYFDNVG------------------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HCTTCEEEEEESSC------------------HHHHHHHGGGEEEEEEEEEC
T ss_pred             hhcCCCceeEEecC------------------chhhhhhhhhccCCCeEEee
Confidence            56778999997331                  13456789999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0039  Score=45.58  Aligned_cols=90  Identities=18%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCe-EEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAV-VLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~-~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||=+|||+ |.++..+++..+          .+++++|.++- ..     -++. ++   |..+...   .  .
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~G----------a~~i~~~~~~~-~~~~a~~lGad~~i---~~~~~~~---~--~   88 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMG----------AHVVAFTTSEA-KREAAKALGADEVV---NSRNADE---M--A   88 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT----------CEEEEEESSGG-GHHHHHHHTCSEEE---ETTCHHH---H--H
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhccc----------ccchhhccchh-HHHHHhccCCcEEE---ECchhhH---H--H
Confidence            67899999999988 667777777654          57888988762 11     1222 22   3333221   1  1


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ...+.+|+|+-...     ..            ..+..+.+.|+++|++++.-
T Consensus        89 ~~~~~~D~vid~~g-----~~------------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          89 AHLKSFDFILNTVA-----AP------------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTTTCEEEEEECCS-----SC------------CCHHHHHTTEEEEEEEEECC
T ss_pred             HhcCCCceeeeeee-----cc------------hhHHHHHHHHhcCCEEEEec
Confidence            22457999987432     11            12445788999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.83  E-value=0.011  Score=43.22  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             cCCCCeeEeecCCCCchH-HHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCCCCh-hHHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDFTQP-DIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG~~s-~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~~~~-~~~~~i~~~  131 (229)
                      +++|++||=+|+|+++.. ..+++..         ....|+++|.++-.    .--++ +++   |..+. +........
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~---------g~~~Vi~~~~~~~rl~~a~~~GAd~~i---n~~~~~~~~~~~~~~   93 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSA---------GAKRIIAVDLNPDKFEKAKVFGATDFV---NPNDHSEPISQVLSK   93 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT---------TCSEEEEECSCGGGHHHHHHTTCCEEE---CGGGCSSCHHHHHHH
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHH---------hhchheeecchHHHHHHHHHcCCcEEE---cCCCcchhHHHHHHh
Confidence            689999999999996554 4444444         45689999998721    01122 333   21111 112233344


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      ..+..+|+|+-....                 ...+..+...+++||..++
T Consensus        94 ~~~~G~d~vid~~G~-----------------~~~~~~a~~~~~~g~~~~~  127 (175)
T d1cdoa2          94 MTNGGVDFSLECVGN-----------------VGVMRNALESCLKGWGVSV  127 (175)
T ss_dssp             HHTSCBSEEEECSCC-----------------HHHHHHHHHTBCTTTCEEE
T ss_pred             hccCCcceeeeecCC-----------------HHHHHHHHHHhhCCCccee
Confidence            446689999874321                 1334556777777654443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.01  Score=48.31  Aligned_cols=57  Identities=19%  Similarity=0.032  Sum_probs=43.5

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--------CCCCCCeEEecCCCCChhHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      .+..|||+|+|+|.+|..+++..+         ..+|+++|+++.        ..-.++.++ .+|+...+....
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~---------~~~v~~iE~D~~~~~~L~~~~~~~~~~ii-~~D~l~~~~~~~  107 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC---------PRQYSLLEKRSSLYKFLNAKFEGSPLQIL-KRDPYDWSTYSN  107 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC---------CSEEEEECCCHHHHHHHHHHTTTSSCEEE-CSCTTCHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC---------CCEEEEEECCHHHHHHHHHhccCCCcEEE-eCchhhcchhhh
Confidence            467899999999999999998752         348999999861        122468888 999988654433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.74  E-value=0.0014  Score=51.63  Aligned_cols=54  Identities=20%  Similarity=0.140  Sum_probs=37.8

Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCccc-HHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMD-HDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d-~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      ..++++++|+|+.|++.+.. ....+ +....+.....+.++.++|+|+|.+++..
T Consensus        17 ~~l~d~SIDliitDPPYn~~-~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_          17 AKLPDDSVQLIICDPPYNIM-LADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             HTSCTTCEEEEEECCCSBCC-GGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhCcCCCccEEEECCCCCCC-cccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            44789999999999975432 11111 11233455678899999999999998755

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.73  E-value=0.0059  Score=47.94  Aligned_cols=115  Identities=14%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C------------C-------CCCCeEEecCCCCCh
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y------------P-------IDGAVVLSKCDFTQP  122 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~------------~-------~~~~~~~~~~D~~~~  122 (229)
                      .+|||+-||.|..+..+|.. |          ++|+++|.++. .            .       ..+++++ .+|..+ 
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~-G----------~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li-~~Ds~~-  156 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV-G----------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI-HASSLT-  156 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-T----------CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE-ESCHHH-
T ss_pred             CEEEECCCcccHHHHHHHhC-C----------CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheee-cCcHHH-
Confidence            48999999999999999975 3          69999999972 0            0       1245677 776332 


Q ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH-HHHhhC
Q psy1489         123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE-SITRFY  201 (229)
Q Consensus       123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~-~l~~~F  201 (229)
                          .+.. . ...||+|+.|+++.... +...       ....+.....++.          ...+.+++++ .++...
T Consensus       157 ----~L~~-~-~~~~DvIYlDPMFp~~~-Ksa~-------~kk~m~~l~~l~~----------~d~d~~~ll~~a~~~a~  212 (250)
T d2oyra1         157 ----ALTD-I-TPRPQVVYLDPMFPHKQ-KSAL-------VKKEMRVFQSLVG----------PDLDADGLLEPARLLAT  212 (250)
T ss_dssp             ----HSTT-C-SSCCSEEEECCCCCCCC-C------------HHHHHHHHHSC----------CCTTGGGGHHHHHHHCS
T ss_pred             ----HHhc-c-CCCCCEEEECCCCcccc-cccc-------chhHHHHHHhhcc----------CCCCHHHHHHHHHhhCC
Confidence                1111 1 35799999999863211 1111       1111222222221          2234455554 445567


Q ss_pred             CeeEEEcCCCCCC
Q psy1489         202 SQVKILKPPSSRS  214 (229)
Q Consensus       202 ~~v~~~kp~~sr~  214 (229)
                      .+|.+.+|..+..
T Consensus       213 ~RVVVKRp~~a~~  225 (250)
T d2oyra1         213 KRVVVKRPDYAPP  225 (250)
T ss_dssp             SEEEEEEETTCCC
T ss_pred             CEEEEeCcCCCcc
Confidence            8898888865543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.31  E-value=0.0089  Score=46.09  Aligned_cols=63  Identities=8%  Similarity=0.041  Sum_probs=42.7

Q ss_pred             cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCC---CcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489         116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGM---REMDHDLITQLAIAVIRFAVTYSKPGADCLIKI  184 (229)
Q Consensus       116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~---~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~  184 (229)
                      .+|..+      +...++++++|+|+.|++.+....   ...+.....+.....+.++.++|+|||.+++..
T Consensus         9 ~gDcle------~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           9 QMNCFD------FLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             ECCHHH------HHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccHHH------HHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            666544      334578999999999987543211   112233445566788999999999999887543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.19  E-value=0.0086  Score=47.62  Aligned_cols=67  Identities=7%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCC---CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489         112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATG---MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW  185 (229)
Q Consensus       112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g---~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~  185 (229)
                      .++ ++|..+      +...++++++|+|+.|++-+...   ....++...+..+...+.++.++|+|+|.+++.+.
T Consensus        14 ~l~-~GD~le------~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          14 SMY-IGDSLE------LLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             EEE-ESCHHH------HGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEE-ehhHHH------HHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            455 677443      33457899999999998754321   12233445556677899999999999999988653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.86  E-value=0.0097  Score=43.60  Aligned_cols=88  Identities=22%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCeEEecCCCCChhHHHHHHHH
Q psy1489          59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +++|++||-.|+ |+ |..+..+++..|          .+|++++.++ ...     -+++..  -|..+  ...   ..
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G----------~~vi~~~~~~-~~~~~~~~lGa~~~--i~~~~--~~~---~~   86 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMG----------LRVLAAASRP-EKLALPLALGAEEA--ATYAE--VPE---RA   86 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT----------CEEEEEESSG-GGSHHHHHTTCSEE--EEGGG--HHH---HH
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccc----------cccccccccc-ccccccccccccee--eehhh--hhh---hh
Confidence            579999999884 55 566677777654          6899999876 111     122221  12222  111   22


Q ss_pred             hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .....+|+|+.-     .| .             .+..+.+.|+|+|++++.
T Consensus        87 ~~~~g~D~v~d~-----~G-~-------------~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          87 KAWGGLDLVLEV-----RG-K-------------EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHTTSEEEEEEC-----SC-T-------------THHHHHTTEEEEEEEEEC
T ss_pred             hccccccccccc-----cc-h-------------hHHHHHHHHhcCCcEEEE
Confidence            235679999862     23 1             123477899999999864

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.031  Score=41.33  Aligned_cols=95  Identities=13%  Similarity=0.178  Sum_probs=61.2

Q ss_pred             cCCC--CeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHH
Q psy1489          59 LRPG--LKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        59 ~~~g--~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +++|  ++||-.|+ |. |.++..+++..+         ...|++++.++-.     .--+++.+  -|..+.+..+.+.
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~G---------a~~vi~~~~~~e~~~~l~~~~gad~v--i~~~~~~~~~~~~   94 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLG---------CSRVVGICGTQEKCLFLTSELGFDAA--VNYKTGNVAEQLR   94 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTT---------CSEEEEEESSHHHHHHHHHHSCCSEE--EETTSSCHHHHHH
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcC---------CcceecccchHHHHhhhhhcccceEE--eeccchhHHHHHH
Confidence            4555  78998884 55 889999998874         3467777766411     01133322  3555555566666


Q ss_pred             HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      +.. +..+|+|+-..     |             ...+..+.+.|+++|++++.
T Consensus        95 ~~~-~~GvDvv~D~v-----G-------------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          95 EAC-PGGVDVYFDNV-----G-------------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHC-TTCEEEEEESS-----C-------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHh-ccCceEEEecC-----C-------------chhHHHHhhhccccccEEEe
Confidence            654 46799999732     1             12456688999999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.28  E-value=0.4  Score=36.24  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=61.3

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhH----HHHHHHHhCCCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI----QDRLVTILKDDK  136 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~----~~~i~~~~~~~~  136 (229)
                      +|++||-.|++ |+++..+++.+..       ...+|+.+|.++-......... ..+..+...    ...+...+....
T Consensus         1 egK~vlITGas-~GIG~a~a~~l~~-------~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   71 (236)
T d1dhra_           1 EARRVLVYGGR-GALGSRCVQAFRA-------RNWWVASIDVVENEEASASVIV-KMTDSFTEQADQVTAEVGKLLGDQK   71 (236)
T ss_dssp             CCCEEEEETTT-SHHHHHHHHHHHT-------TTCEEEEEESSCCTTSSEEEEC-CCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEeCCcccccccccee-ecccCcHHHHHHHHHHHHHHhCCCC
Confidence            36788888865 5667777766642       2358999998763222222223 344333322    223334455667


Q ss_pred             ccEEEeCCCCCCC--CCCcc--cHHHH-HH----HHHHHHHHHHHcccCCCEEEEe
Q psy1489         137 LDVVLSDMAPNAT--GMREM--DHDLI-TQ----LAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       137 ~D~V~sd~~~~~~--g~~~~--d~~~~-~~----~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .|+++.++.....  .....  +.+.. ++    -.....+.+...++++|.++.-
T Consensus        72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~i  127 (236)
T d1dhra_          72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLA  127 (236)
T ss_dssp             EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEE
Confidence            9999987652111  11111  11111 11    1123455677778999998763

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.61  E-value=0.36  Score=39.28  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             CCeeEeecCCCCchHHHH--------HHHHhccCCCCCCCCcEEEEEeCCCC------CCCC-------C--CeEEecCC
Q psy1489          62 GLKVLDCGAAPGSWSQVA--------VKLVNSHGYDSKQPKGLVLSVDKLPI------YPID-------G--AVVLSKCD  118 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~l--------a~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~-------~--~~~~~~~D  118 (229)
                      .-+|.|+||+.|..+..+        .++.... .....|.-+|+-.|+-.-      ..++       .  +..+ .+.
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~-~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gv-pGS  129 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKM-GRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGV-PGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSS-SCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEE-ESC
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhc-CCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEec-CCc
Confidence            367999999999877432        2221111 111224557888887431      0111       1  1223 455


Q ss_pred             CCChhHHHHHHHHhCCCCccEEEeCCCCCC-C----CC-------C--------ccc--HHHHHHHHHHHHHHHHHcccC
Q psy1489         119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNA-T----GM-------R--------EMD--HDLITQLAIAVIRFAVTYSKP  176 (229)
Q Consensus       119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~-~----g~-------~--------~~d--~~~~~~~~~~~l~~~~~~Lkp  176 (229)
                      +.+        ..+|+++.|+++|..+..+ +    ++       +        ..+  .....+.....|..=.+-|+|
T Consensus       130 FY~--------rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  201 (359)
T d1m6ex_         130 FYG--------RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP  201 (359)
T ss_dssp             SSS--------CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred             hhh--------hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            554        3578899999998765321 1    00       0        001  112233445677777778999


Q ss_pred             CCEEEEeecC
Q psy1489         177 GADCLIKIWD  186 (229)
Q Consensus       177 gG~~v~~~~~  186 (229)
                      ||++++..+.
T Consensus       202 GG~mvl~~~g  211 (359)
T d1m6ex_         202 GGRMVLTILG  211 (359)
T ss_dssp             TCEEEEEEEE
T ss_pred             CcEEEEEEec
Confidence            9999987643

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.09  Score=41.85  Aligned_cols=144  Identities=13%  Similarity=0.150  Sum_probs=74.4

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      .+|+||.||.|+++..+.. .|        -.. .|.++|+.+-      ...++..++ .+|+.+.....     ++..
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~-aG--------~~~~~~~a~E~~~~a~~~~~~n~~~~~~~-~~di~~~~~~~-----~~~~   67 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRE-SC--------IPAQVVAAIDVNTVANEVYKYNFPHTQLL-AKTIEGITLEE-----FDRL   67 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHH-HT--------CSEEEEEEECCCHHHHHHHHHHCTTSCEE-CSCGGGCCHHH-----HHHH
T ss_pred             CEEEEcCcCccHHHHHHHH-cC--------CCCeEEEEEECCHHHHHHHHHHCCCCCcc-cCchhhCCHhH-----cCCC
Confidence            5899999999999877543 33        122 3679999861      123556677 78887653221     2223


Q ss_pred             CccEEEeCCCCCCCCCCcccHHHH-----HHHHHHHHHHHHHcc--cCCCEEEEee---c-CCCChHHHHHHHHhhCCee
Q psy1489         136 KLDVVLSDMAPNATGMREMDHDLI-----TQLAIAVIRFAVTYS--KPGADCLIKI---W-DGRNRPQLEESITRFYSQV  204 (229)
Q Consensus       136 ~~D~V~sd~~~~~~g~~~~d~~~~-----~~~~~~~l~~~~~~L--kpgG~~v~~~---~-~~~~~~~~~~~l~~~F~~v  204 (229)
                      .+|+++...++.  +.+.......     -.+....++.+ +.+  +|. .|+++=   + .......++..|+..-..+
T Consensus        68 ~~Dll~ggpPCq--~fS~ag~~~~~~d~r~~l~~~~~~~i-~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v  143 (343)
T d1g55a_          68 SFDMILMSPPCQ--PFTRIGRQGDMTDSRTNSFLHILDIL-PRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQY  143 (343)
T ss_dssp             CCSEEEECCC--------------------CHHHHHHHHG-GGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             CccEEEeecccc--cccccccccccccccccccchhhhhH-hhhcCCCc-eeeeeccCCcccchhhHHHHhhhhcccccc
Confidence            689999876542  2221111100     01222223322 233  464 455442   1 1223456667777764455


Q ss_pred             EEEcCCCCC----CCCceEEEEecc
Q psy1489         205 KILKPPSSR----SHSAELFLLGRG  225 (229)
Q Consensus       205 ~~~kp~~sr----~~s~E~Y~v~~~  225 (229)
                      ....-.++-    ..+.-+|+||..
T Consensus       144 ~~~vlna~dyGvPQ~R~Rvfivg~r  168 (343)
T d1g55a_         144 QEFLLSPTSLGIPNSRLRYFLIAKL  168 (343)
T ss_dssp             EEEEECGGGGTCSCCCCEEEEEEEE
T ss_pred             ceeeeeccccCCcccceeEEEEEEe
Confidence            554444432    356667777753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.40  E-value=0.48  Score=32.12  Aligned_cols=91  Identities=7%  Similarity=-0.041  Sum_probs=58.2

Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCC
Q psy1489          70 AAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMA  145 (229)
Q Consensus        70 cGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~  145 (229)
                      ||.|.++..+++.+.         ...|+.+|.++-    ....++.++ .+|.++++.+..    ..=..++.+++...
T Consensus         6 ~G~g~~g~~l~~~L~---------~~~i~vi~~d~~~~~~~~~~~~~~i-~Gd~~~~~~L~~----a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELR---------GSEVFVLAEDENVRKKVLRSGANFV-HGDPTRVSDLEK----ANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSC---------GGGEEEEESCTTHHHHHHHTTCEEE-ESCTTSHHHHHH----TTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHc---------CCCCEEEEcchHHHHHHHhcCcccc-ccccCCHHHHHH----hhhhcCcEEEEecc
Confidence            577888999998763         235778888772    123578899 999999875543    22346888888442


Q ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489         146 PNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR  188 (229)
Q Consensus       146 ~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~  188 (229)
                               +....     ..+....+.+.|...++..+....
T Consensus        72 ---------~d~~n-----~~~~~~~r~~~~~~~iia~~~~~~  100 (129)
T d2fy8a1          72 ---------SDSET-----IHCILGIRKIDESVRIIAEAERYE  100 (129)
T ss_dssp             ---------SHHHH-----HHHHHHHHHHCSSSCEEEECSSGG
T ss_pred             ---------chhhh-----HHHHHHHHHHCCCceEEEEEcCHH
Confidence                     12122     122334566889988888765443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.17  E-value=0.17  Score=36.93  Aligned_cols=94  Identities=14%  Similarity=0.045  Sum_probs=56.3

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-----CCCe-EEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-----DGAV-VLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-----~~~~-~~~~~D~~~~~~~~~i~~  130 (229)
                      .++|++||--|++-  |.++..+++..+          ++|++...++- ..     -++. ++   |..+.  ......
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~G----------a~Viat~~s~~-k~~~~~~lGa~~vi---~~~~~--~~~~~~   92 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRG----------YTVEASTGKAA-EHDYLRVLGAKEVL---AREDV--MAERIR   92 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTT----------CCEEEEESCTT-CHHHHHHTTCSEEE---ECC----------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcC----------CceEEecCchH-HHHHHHhcccceee---ecchh--HHHHHH
Confidence            56789999888654  567777887765          68999887761 11     1222 22   11111  111222


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ...++.+|+|+-...-                  ..+..+.+.|+|||++++.-..
T Consensus        93 ~~~~~gvD~vid~vgg------------------~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          93 PLDKQRWAAAVDPVGG------------------RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             -CCSCCEEEEEECSTT------------------TTHHHHHHTEEEEEEEEECSCC
T ss_pred             HhhccCcCEEEEcCCc------------------hhHHHHHHHhCCCceEEEeecc
Confidence            3456789999985421                  1245588899999999875543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=91.06  E-value=0.68  Score=35.96  Aligned_cols=65  Identities=11%  Similarity=0.050  Sum_probs=43.3

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PIDGAVVLSKCDFTQPDIQDRLVTILKDDK  136 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~  136 (229)
                      .+||||-||-|+++.-+-+ .|         --.+.++|+.+.  .    ..+ -..+ .+|+++....     .+  ..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~-aG---------~~~~~a~e~d~~a~~~~~~N~~-~~~~-~~Di~~~~~~-----~~--~~   61 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQK-AG---------FRIICANEYDKSIWKTYESNHS-AKLI-KGDISKISSD-----EF--PK   61 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHH-HT---------CEEEEEEECCHHHHHHHHHHCC-SEEE-ESCTTTSCGG-----GS--CC
T ss_pred             CeEEEeCcCcCHHHHHHHH-CC---------CEEEEEEeCCHHHHHHHHHHCC-CCCc-cCChhhCCHh-----Hc--cc
Confidence            4799999999999877554 33         125679999861  1    123 3456 7898875321     12  36


Q ss_pred             ccEEEeCCCC
Q psy1489         137 LDVVLSDMAP  146 (229)
Q Consensus       137 ~D~V~sd~~~  146 (229)
                      +|+++...++
T Consensus        62 ~dll~~g~PC   71 (324)
T d1dcta_          62 CDGIIGGPPC   71 (324)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEeecccc
Confidence            8999987664

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.03  E-value=1  Score=33.62  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHH----HHHHHHhCCCCc
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ----DRLVTILKDDKL  137 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~----~~i~~~~~~~~~  137 (229)
                      +.+||-.|++ |+++..+++.+..       ...+|+.+|.++-......... .+|.......    ..+...+..++.
T Consensus         2 ~gkVlITGas-~GIG~aia~~l~~-------~G~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i   72 (235)
T d1ooea_           2 SGKVIVYGGK-GALGSAILEFFKK-------NGYTVLNIDLSANDQADSNILV-DGNKNWTEQEQSILEQTASSLQGSQV   72 (235)
T ss_dssp             CEEEEEETTT-SHHHHHHHHHHHH-------TTEEEEEEESSCCTTSSEEEEC-CTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHH-------CCCEEEEEECCchhccccccee-ccccCchhHHHHHHHHHHHHhcCCCe
Confidence            3578877766 5677777766642       2358999999873222222233 4555443322    223333456789


Q ss_pred             cEEEeCCCCCCCCC-Ccc---cHHHH-HHH----HHHHHHHHHHcccCCCEEEEe
Q psy1489         138 DVVLSDMAPNATGM-REM---DHDLI-TQL----AIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       138 D~V~sd~~~~~~g~-~~~---d~~~~-~~~----~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      |+++.++.....+. ...   +.+.. ++.    .....+.+...|+++|+++..
T Consensus        73 D~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~i  127 (235)
T d1ooea_          73 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLT  127 (235)
T ss_dssp             EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEe
Confidence            99999875322211 111   22211 111    113456677788999987763

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.04  E-value=0.69  Score=37.20  Aligned_cols=72  Identities=18%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC------------CCCC---------------CCCCeEE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL------------PIYP---------------IDGAVVL  114 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~------------~~~~---------------~~~~~~~  114 (229)
                      |++||-.|. +|.++.++++.+-.       ....|+++|-.            ...+               -++++++
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~-------~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   72 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSK-------KNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY   72 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHH-------CcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEE
Confidence            678888775 89999998877642       23589999821            1111               1467899


Q ss_pred             ecCCCCChhHHHHHHHHhCCCCccEEEeCCC
Q psy1489         115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMA  145 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~  145 (229)
                       .+|+++.+....+   +.+..+|+|+.-++
T Consensus        73 -~~Dl~d~~~l~~~---~~~~~~d~ViHlAa   99 (393)
T d1i24a_          73 -VGDICDFEFLAES---FKSFEPDSVVHFGE   99 (393)
T ss_dssp             -ESCTTSHHHHHHH---HHHHCCSEEEECCS
T ss_pred             -EccCCCHHHHHHH---HHhhcchheecccc
Confidence             9999997655443   33446899987554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.69  E-value=1.5  Score=33.25  Aligned_cols=77  Identities=21%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHh-C-C
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTIL-K-D  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~-~-~  134 (229)
                      +|+.+|--|++ +++...+++.+..       ...+|+.+|.++-.    .-.+..++ +.|+++.+..+.+.+.. . -
T Consensus         4 ~GK~alITGas-~GIG~aia~~la~-------~G~~V~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           4 AGKGVLVTGGA-RGIGRAIAQAFAR-------EGALVALCDLRPEGKEVAEAIGGAFF-QVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESSTTHHHHHHHHTCEEE-ECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHcCCeEE-EEeCCCHHHHHHHHHHHHHhc
Confidence            47888888854 5666666766542       23689999987611    01145677 89999976444332211 1 1


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      ++.|+++.++..
T Consensus        75 G~iDiLVnnAG~   86 (248)
T d2d1ya1          75 GRVDVLVNNAAI   86 (248)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeEEEeCcC
Confidence            479999998753

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.19  E-value=1.6  Score=34.87  Aligned_cols=75  Identities=23%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC-CC----C----------------------CCCCCeEE
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL-PI----Y----------------------PIDGAVVL  114 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~-~~----~----------------------~~~~~~~~  114 (229)
                      +++||=.| |+|.++.++++++-.      +....|+++|.. ..    .                      ....+.++
T Consensus         2 ~MKVLITG-~tGfIGs~lv~~LL~------~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (383)
T d1gy8a_           2 HMRVLVCG-GAGYIGSHFVRALLR------DTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE   74 (383)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHH------HCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred             cCEEEEeC-CCcHHHHHHHHHHHH------hCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEE
Confidence            57888666 889999888876510      034589999941 10    0                      01246788


Q ss_pred             ecCCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489         115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~  146 (229)
                       .+|+++.+....+...  ...+|+|+.-+++
T Consensus        75 -~~Di~d~~~l~~~~~~--~~~~d~ViH~Aa~  103 (383)
T d1gy8a_          75 -VGDVRNEDFLNGVFTR--HGPIDAVVHMCAF  103 (383)
T ss_dssp             -ESCTTCHHHHHHHHHH--SCCCCEEEECCCC
T ss_pred             -ECcccCHHHhhhhhhc--cceeehhhccccc
Confidence             9999997755444332  2468999987654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.15  E-value=2  Score=32.50  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----------CCC--CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----------YPI--DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----------~~~--~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|+.+|--|++ +++...+++.+..       ...+|+.+|.++-          ...  ..+.++ +.|+++.+....+
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~-------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dv~~~~~v~~~   72 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLL-------KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFI-QCDVADQQQLRDT   72 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEE-ECCTTSHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEE-EeecCCHHHHHHH
Confidence            47788888866 5566666766542       2368999998741          111  246677 8999997654433


Q ss_pred             HHHhC--CCCccEEEeCCCC
Q psy1489         129 VTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~  146 (229)
                      .+...  -+..|+++.++..
T Consensus        73 ~~~~~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          73 FRKVVDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHcCCcCeecccccc
Confidence            32221  1479999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.73  Score=36.33  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      ++||-.| |+|..+.++++.+-.       ....|+++|...-.           .-.++.++ ++|+++.+....+   
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~-------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~l~~~---   68 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQ-------NGHDVIILDNLCNSKRSVLPVIERLGGKHPTFV-EGDIRNEALMTEI---   68 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEE-ECCTTCHHHHHHH---
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHH-------CcCEEEEEECCCCcchhhHHHHHhhcCCCCEEE-EeecCCHHHHHHH---
Confidence            3566665 789999998887642       23589999864210           12468899 9999997654433   


Q ss_pred             hCCCCccEEEeCCC
Q psy1489         132 LKDDKLDVVLSDMA  145 (229)
Q Consensus       132 ~~~~~~D~V~sd~~  145 (229)
                      +....+|+|+.-++
T Consensus        69 ~~~~~~d~ViHlAa   82 (338)
T d1udca_          69 LHDHAIDTVIHFAG   82 (338)
T ss_dssp             HHHTTCSEEEECCS
T ss_pred             HhccCCCEEEECCC
Confidence            33457999997554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.01  E-value=2.7  Score=31.41  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCC--CCcc
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD--DKLD  138 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~--~~~D  138 (229)
                      .|+++|--|++. +++..+++.+..       ...+|+.+|.++ .....+..+ +.|+++++..+.+.+...+  +..|
T Consensus         6 ~gK~~lITGas~-GIG~aia~~la~-------~Ga~V~~~~r~~-~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~iD   75 (237)
T d1uzma1           6 VSRSVLVTGGNR-GIGLAIAQRLAA-------DGHKVAVTHRGS-GAPKGLFGV-EVDVTDSDAVDRAFTAVEEHQGPVE   75 (237)
T ss_dssp             CCCEEEETTTTS-HHHHHHHHHHHH-------TTCEEEEEESSS-CCCTTSEEE-ECCTTCHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHH-------CCCEEEEEECCc-chhcCceEE-EEecCCHHHHHHHHHHHHHhcCCce
Confidence            477888888655 566666665532       236999999987 455677778 9999998754443322211  4799


Q ss_pred             EEEeCCCC
Q psy1489         139 VVLSDMAP  146 (229)
Q Consensus       139 ~V~sd~~~  146 (229)
                      +++.++..
T Consensus        76 iLVnnAG~   83 (237)
T d1uzma1          76 VLVSNAGL   83 (237)
T ss_dssp             EEEEECSC
T ss_pred             EEEeeecc
Confidence            99988653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.56  E-value=2.8  Score=28.08  Aligned_cols=65  Identities=14%  Similarity=0.102  Sum_probs=44.2

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---CCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD  138 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D  138 (229)
                      +|+=+|+  |.++..+++.+..       ....|+.+|.++  +.   ...+..++ .+|.+++.+...    ..-..+|
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~-------~g~~v~vid~d~~~~~~~~~~~~~~vi-~Gd~~~~~~l~~----~~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSE-------KGHDIVLIDIDKDICKKASAEIDALVI-NGDCTKIKTLED----AGIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHCSSEEE-ESCTTSHHHHHH----TTTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHH-------CCCCcceecCChhhhhhhhhhhhhhhc-cCcccchhhhhh----cChhhhh
Confidence            5666665  7788888876641       234799999987  11   11267788 999999876543    2335689


Q ss_pred             EEEe
Q psy1489         139 VVLS  142 (229)
Q Consensus       139 ~V~s  142 (229)
                      .+++
T Consensus        68 ~vv~   71 (132)
T d1lssa_          68 MYIA   71 (132)
T ss_dssp             EEEE
T ss_pred             hhcc
Confidence            9998

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.56  E-value=4.2  Score=30.78  Aligned_cols=77  Identities=19%  Similarity=0.183  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +|+.+|--|++. +++..+++.+..       ...+|+.+|.++-         .....+.++ .+|+++.+....+.+.
T Consensus         5 ~gKvalITGas~-GIG~aia~~la~-------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~-~~Dv~~~~~v~~~~~~   75 (268)
T d2bgka1           5 QDKVAIITGGAG-GIGETTAKLFVR-------YGAKVVIADIADDHGQKVCNNIGSPDVISFV-HCDVTKDEDVRNLVDT   75 (268)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHCCTTTEEEE-ECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHhcCCCceEEE-EccCCCHHHHHHHHHH
Confidence            478888889665 466666666542       2368999998751         122346677 8999997644433221


Q ss_pred             hC--CCCccEEEeCCCC
Q psy1489         132 LK--DDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~--~~~~D~V~sd~~~  146 (229)
                      ..  -+..|+++.++..
T Consensus        76 ~~~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          76 TIAKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCcceecccccc
Confidence            11  1479999988753

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=2.8  Score=31.87  Aligned_cols=114  Identities=12%  Similarity=-0.018  Sum_probs=63.0

Q ss_pred             CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      |++|.=+=-|+++++..+++.+...      ...+|+..+.++-  .        .-.++.++ +.|+.+.+....+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dvs~~~sv~~~~~~   74 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRL------FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH-QLDIDDLQSIRALRDF   74 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHH------SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHh------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE-EEecCCHHHHHHHHHH
Confidence            6777544334556666666544210      1358888888751  0        12357888 9999997654433222


Q ss_pred             hC--CCCccEEEeCCCCCCCCC-Cccc--HHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489         132 LK--DDKLDVVLSDMAPNATGM-REMD--HDL-ITQ----LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       132 ~~--~~~~D~V~sd~~~~~~g~-~~~d--~~~-~~~----~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.  -+..|+++.|+....... ...+  .+. .++    -.....+.+...|+++|+++.
T Consensus        75 ~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn  135 (275)
T d1wmaa1          75 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN  135 (275)
T ss_dssp             HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            21  147999999986422111 1111  111 111    111345667778889998765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=2.8  Score=31.47  Aligned_cols=75  Identities=17%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      .|+++|--|++ +++...+++++..       ...+|+.+|.++-      ...+++..+ +.|+.+.+..+.+.+.+  
T Consensus         6 ~GK~~lITGas-~GIG~aia~~la~-------~G~~V~~~~r~~~~l~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~~~--   74 (244)
T d1pr9a_           6 AGRRVLVTGAG-KGIGRGTVQALHA-------TGARVVAVSRTQADLDSLVRECPGIEPV-CVDLGDWEATERALGSV--   74 (244)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHSTTCEEE-ECCTTCHHHHHHHHTTC--
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------cCCEEEEEECCHHHHHHHHHhcCCCeEE-EEeCCCHHHHHHHHHHh--
Confidence            58899999966 4566666665532       2358999998851      124578888 99999987665555444  


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      ++.|+++.++..
T Consensus        75 g~iDilVnnAg~   86 (244)
T d1pr9a_          75 GPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            479999998754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=86.91  E-value=4.8  Score=30.16  Aligned_cols=77  Identities=9%  Similarity=0.005  Sum_probs=49.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C-------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I-------YPIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~-------~~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +|+.+|--|++ +++...+++.+..       ...+|+.+|.++  .       ..-..+.++ ++|+++.+....+.+.
T Consensus         5 ~gK~alVTGas-~GIG~aia~~la~-------~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~   75 (251)
T d1zk4a1           5 DGKVAIITGGT-LGIGLAIATKFVE-------EGAKVMITGRHSDVGEKAAKSVGTPDQIQFF-QHDSSDEDGWTKLFDA   75 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHCCTTTEEEE-ECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHhCCCCcEEEE-EccCCCHHHHHHHHHH
Confidence            46778877854 5566666665542       236899999874  1       122357788 9999998654433222


Q ss_pred             hC--CCCccEEEeCCCC
Q psy1489         132 LK--DDKLDVVLSDMAP  146 (229)
Q Consensus       132 ~~--~~~~D~V~sd~~~  146 (229)
                      ..  -+..|+++.++..
T Consensus        76 ~~~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          76 TEKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHHSSCCEEEECCCC
T ss_pred             HHHHhCCceEEEecccc
Confidence            11  1479999998764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=1.8  Score=32.87  Aligned_cols=77  Identities=26%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +|+.+|--|++. ++...+++.+..       ...+|+.+|.++  .    ..++++.++ ++|+++.+....+.+...+
T Consensus         5 ~GK~alITGas~-GIG~aia~~la~-------~Ga~V~i~~r~~~~~~~~~~~~~~~~~~-~~Dvs~~~~v~~~~~~~~~   75 (250)
T d1ydea1           5 AGKVVVVTGGGR-GIGAGIVRAFVN-------SGARVVICDKDESGGRALEQELPGAVFI-LCDVTQEDDVKTLVSETIR   75 (250)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHCTTEEEE-ECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHhcCCCeEE-EccCCCHHHHHHHHHHHHH
Confidence            478888888765 466666665542       236899999875  1    134577888 9999997655443322211


Q ss_pred             --CCccEEEeCCCC
Q psy1489         135 --DKLDVVLSDMAP  146 (229)
Q Consensus       135 --~~~D~V~sd~~~  146 (229)
                        +..|+++.++..
T Consensus        76 ~~g~iDilVnnAG~   89 (250)
T d1ydea1          76 RFGRLDCVVNNAGH   89 (250)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hcCCCCEEEecccc
Confidence              479999998763

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=86.18  E-value=2.1  Score=32.23  Aligned_cols=63  Identities=19%  Similarity=0.297  Sum_probs=43.3

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEe
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS  142 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~s  142 (229)
                      ++||=.| |+|..+.++.+.+.        ..+++++++....    .   . .+|+++......+   +.+.++|+|+.
T Consensus         1 MKILItG-~tGfiG~~l~~~L~--------~~g~~v~~~~~~~----~---~-~~Dl~~~~~~~~~---i~~~~~D~Vih   60 (298)
T d1n2sa_           1 MNILLFG-KTGQVGWELQRSLA--------PVGNLIALDVHSK----E---F-CGDFSNPKGVAET---VRKLRPDVIVN   60 (298)
T ss_dssp             CEEEEEC-TTSHHHHHHHHHTT--------TTSEEEEECTTCS----S---S-CCCTTCHHHHHHH---HHHHCCSEEEE
T ss_pred             CEEEEEC-CCCHHHHHHHHHHH--------hCCCEEEEECCCc----c---c-cCcCCCHHHHHHH---HHHcCCCEEEE
Confidence            3566555 68999999998876        5678999987651    1   2 6888887644333   33346899997


Q ss_pred             CCC
Q psy1489         143 DMA  145 (229)
Q Consensus       143 d~~  145 (229)
                      -++
T Consensus        61 ~Aa   63 (298)
T d1n2sa_          61 AAA   63 (298)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            553

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.62  E-value=0.35  Score=36.97  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+|+.|||.-||+|.-+.++. .++          -+.+|+|+++
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~-~lg----------R~~ig~El~~  239 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAI-QEG----------RNSICTDAAP  239 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHH-HHT----------CEEEEEESST
T ss_pred             CCCCEEEecCCCCcHHHHHHH-HhC----------CeEEEEeCCH
Confidence            589999999999998876644 444          4899999987

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=1.5  Score=34.31  Aligned_cols=71  Identities=18%  Similarity=0.072  Sum_probs=46.7

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL  137 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~  137 (229)
                      ++||=.|+ +|.++.++++.+-..      +...|+++|...     ....++++++ ++|+++.......  ..  ..+
T Consensus         1 MKILITG~-tGfiG~~l~~~Ll~~------g~~~V~~ld~~~~~~~~~~~~~~~~~i-~~Di~~~~~~~~~--~~--~~~   68 (342)
T d2blla1           1 MRVLILGV-NGFIGNHLTERLLRE------DHYEVYGLDIGSDAISRFLNHPHFHFV-EGDISIHSEWIEY--HV--KKC   68 (342)
T ss_dssp             CEEEEETC-SSHHHHHHHHHHHHS------TTCEEEEEESCCGGGGGGTTCTTEEEE-ECCTTTCSHHHHH--HH--HHC
T ss_pred             CEEEEECC-CcHHHHHHHHHHHHC------CCCEEEEEeCCCcchhhhccCCCeEEE-ECccCChHHHHHH--HH--hCC
Confidence            46777775 999999888766311      224799999864     1234678899 9999875322211  12  258


Q ss_pred             cEEEeCCC
Q psy1489         138 DVVLSDMA  145 (229)
Q Consensus       138 D~V~sd~~  145 (229)
                      |.|+.-++
T Consensus        69 d~Vih~a~   76 (342)
T d2blla1          69 DVVLPLVA   76 (342)
T ss_dssp             SEEEECBC
T ss_pred             Cccccccc
Confidence            99998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.08  E-value=3.1  Score=28.57  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=56.1

Q ss_pred             CCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489          70 AAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL  141 (229)
Q Consensus        70 cGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~  141 (229)
                      ||.|.++..+++.+..       ....|+.+|.++-      .  ...++.++ .||.++++++...    .-...|.|+
T Consensus         9 ~G~g~~g~~l~~~L~~-------~~~~v~vId~d~~~~~~~~~~~~~~~~~vi-~Gd~~d~~~L~~a----~i~~a~~vi   76 (153)
T d1id1a_           9 CGHSILAINTILQLNQ-------RGQNVTVISNLPEDDIKQLEQRLGDNADVI-PGDSNDSSVLKKA----GIDRCRAIL   76 (153)
T ss_dssp             ECCSHHHHHHHHHHHH-------TTCCEEEEECCCHHHHHHHHHHHCTTCEEE-ESCTTSHHHHHHH----TTTTCSEEE
T ss_pred             ECCCHHHHHHHHHHHH-------cCCCEEEEeccchhHHHHHHHhhcCCcEEE-EccCcchHHHHHh----ccccCCEEE
Confidence            4556777888876642       2347888988761      0  12478899 9999998765432    234689888


Q ss_pred             eCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       142 sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      +...         +....+     .+....+-+.|.-.++..+..
T Consensus        77 ~~~~---------~d~~n~-----~~~~~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          77 ALSD---------NDADNA-----FVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             ECSS---------CHHHHH-----HHHHHHHHHTSSSCEEEECSS
T ss_pred             Eccc---------cHHHHH-----HHHHHHHHhCCCCceEEEEcC
Confidence            8432         122221     223345567788788776644

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=84.82  E-value=0.26  Score=38.50  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=27.9

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+|+.|||.-||+|..+.++. .++          -+.+|+|+++
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~-~lg----------R~~Ig~El~~  282 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAE-RES----------RKWISFEMKP  282 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHH-HTT----------CEEEEEESCH
T ss_pred             cCCCEEEecCCCCcHHHHHHH-HcC----------CcEEEEeCCH
Confidence            589999999999998876644 443          5899999997

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.74  E-value=4.6  Score=30.55  Aligned_cols=113  Identities=16%  Similarity=0.073  Sum_probs=63.9

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLV  129 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~  129 (229)
                      +|+++|--|++. ++...+++.+..       ...+|+.+|.+.-.           .-..+.++ ++|+.+.+....+.
T Consensus        17 ~gK~~lITGas~-GIG~aia~~la~-------~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~-~~D~~~~~~v~~~~   87 (272)
T d1g0oa_          17 EGKVALVTGAGR-GIGREMAMELGR-------RGCKVIVNYANSTESAEEVVAAIKKNGSDAACV-KANVGVVEDIVRMF   87 (272)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHH-------TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHH-------cCCEEEEEeCCchHHHHHHHHHHHhhCCceeeE-eCCCCCHHHHHHHH
Confidence            478888888865 456666655531       22588888887411           11246677 89999976544333


Q ss_pred             HHhC--CCCccEEEeCCCCCCCC-CCcccHHHHHH-------HHHHHHHHHHHcccCCCEEEE
Q psy1489         130 TILK--DDKLDVVLSDMAPNATG-MREMDHDLITQ-------LAIAVIRFAVTYSKPGADCLI  182 (229)
Q Consensus       130 ~~~~--~~~~D~V~sd~~~~~~g-~~~~d~~~~~~-------~~~~~l~~~~~~LkpgG~~v~  182 (229)
                      +.+.  -+..|+++.+......+ ..+.+......       -.....+.+...|+.+|..++
T Consensus        88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~  150 (272)
T d1g0oa_          88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL  150 (272)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccc
Confidence            2211  14689999887543222 22222211111       112445667777888877665

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.21  E-value=4.1  Score=31.55  Aligned_cols=73  Identities=14%  Similarity=0.038  Sum_probs=50.6

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------PIDGAVVLSKCDFTQPDIQDRLVTI  131 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~~~~~~~~~~~D~~~~~~~~~i~~~  131 (229)
                      +|++||-.|. +|.++.++++.+-.       ....|+++|.++..         ..++++++ .+|+++.+....+.. 
T Consensus         7 ~~KkILVTG~-tGfIGs~lv~~Ll~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~-~~Dl~d~~~l~~~~~-   76 (356)
T d1rkxa_           7 QGKRVFVTGH-TGFKGGWLSLWLQT-------MGATVKGYSLTAPTVPSLFETARVADGMQSE-IGDIRDQNKLLESIR-   76 (356)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHH-------TTCEEEEEESSCSSSSCHHHHTTTTTTSEEE-ECCTTCHHHHHHHHH-
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHH-------CCCEEEEEECCCCccHHHHhhhhcccCCeEE-EeeccChHhhhhhhh-
Confidence            4789998874 58888888877642       23589999987521         12478899 999999765544332 


Q ss_pred             hCCCCccEEEeCCC
Q psy1489         132 LKDDKLDVVLSDMA  145 (229)
Q Consensus       132 ~~~~~~D~V~sd~~  145 (229)
                        ...+|+|+.-++
T Consensus        77 --~~~~~~v~~~aa   88 (356)
T d1rkxa_          77 --EFQPEIVFHMAA   88 (356)
T ss_dssp             --HHCCSEEEECCS
T ss_pred             --hchhhhhhhhhc
Confidence              345788877554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=83.95  E-value=2.1  Score=28.60  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=40.4

Q ss_pred             CCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCC
Q psy1489          71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDM  144 (229)
Q Consensus        71 GpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~  144 (229)
                      |-|.++..+++.+..       ....|+.+|.++-    ....+...+ .+|.+++++.....  +  ..+|.|+...
T Consensus         7 G~G~~G~~la~~L~~-------~g~~vvvid~d~~~~~~~~~~~~~~~-~gd~~~~~~l~~a~--i--~~a~~vi~~~   72 (134)
T d2hmva1           7 GLGRFGGSIVKELHR-------MGHEVLAVDINEEKVNAYASYATHAV-IANATEENELLSLG--I--RNFEYVIVAI   72 (134)
T ss_dssp             CCSHHHHHHHHHHHH-------TTCCCEEEESCHHHHHHTTTTCSEEE-ECCTTCTTHHHHHT--G--GGCSEEEECC
T ss_pred             CCCHHHHHHHHHHHH-------CCCeEEEecCcHHHHHHHHHhCCcce-eeecccchhhhccC--C--ccccEEEEEc
Confidence            556788888877642       2347999999861    123455677 89999987654331  2  3588887744

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=83.72  E-value=5.1  Score=29.94  Aligned_cols=77  Identities=13%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-------C-CCCeEEecCCCCChhHHHHHHHHh
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-------I-DGAVVLSKCDFTQPDIQDRLVTIL  132 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-------~-~~~~~~~~~D~~~~~~~~~i~~~~  132 (229)
                      +|+.+|--|++ +++...+++.+..       ...+|+.+|.++...       . ..+..+ ++|+++.+....+.+..
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~-------~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~-~~Dvs~~~~v~~~~~~~   74 (247)
T d2ew8a1           4 KDKLAVITGGA-NGIGRAIAERFAV-------EGADIAIADLVPAPEAEAAIRNLGRRVLTV-KCDVSQPGDVEAFGKQV   74 (247)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH-------TTCEEEEEESSCCHHHHHHHHHTTCCEEEE-ECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEECCchHHHHHHHHHcCCcEEEE-EeeCCCHHHHHHHHHHH
Confidence            36778877755 5666666666542       235899999876211       1 246677 89999987554433221


Q ss_pred             C--CCCccEEEeCCCC
Q psy1489         133 K--DDKLDVVLSDMAP  146 (229)
Q Consensus       133 ~--~~~~D~V~sd~~~  146 (229)
                      .  -+..|+++.++..
T Consensus        75 ~~~~G~iDilVnnAG~   90 (247)
T d2ew8a1          75 ISTFGRCDILVNNAGI   90 (247)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1  1479999998764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=83.39  E-value=0.28  Score=35.32  Aligned_cols=94  Identities=15%  Similarity=0.079  Sum_probs=55.0

Q ss_pred             cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC-----CCe-EEecCCCCChhHHHHHHH
Q psy1489          59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID-----GAV-VLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~-----~~~-~~~~~D~~~~~~~~~i~~  130 (229)
                      .+++++||--|++-  |.++..+|+..|          ++|+++..++- ..+     +++ ++...|....     ...
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G----------a~Viat~~s~~-k~~~~~~lGad~vi~~~~~~~~-----~~~   84 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRG----------YDVVASTGNRE-AADYLKQLGASEVISREDVYDG-----TLK   84 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHT----------CCEEEEESSSS-THHHHHHHTCSEEEEHHHHCSS-----CCC
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcC----------CceEEEecCHH-HHHHHHhhcccceEeccchhch-----hhh
Confidence            45677888776433  567777888775          68999988761 111     121 1101110000     001


Q ss_pred             HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489         131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD  186 (229)
Q Consensus       131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~  186 (229)
                      ....+.+|+|+-....                  ..+..+.+.|+|+|++++.-..
T Consensus        85 ~~~~~gvd~vid~vgg------------------~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          85 ALSKQQWQGAVDPVGG------------------KQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             SSCCCCEEEEEESCCT------------------HHHHHHHTTEEEEEEEEECCCS
T ss_pred             cccCCCceEEEecCcH------------------HHHHHHHHHhccCceEEEeecc
Confidence            1235679999874421                  3456688999999999875443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=83.03  E-value=3.3  Score=32.59  Aligned_cols=72  Identities=14%  Similarity=0.007  Sum_probs=45.5

Q ss_pred             CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------------CCCCCCeEEecCCCCChhHHHH
Q psy1489          63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------------YPIDGAVVLSKCDFTQPDIQDR  127 (229)
Q Consensus        63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------------~~~~~~~~~~~~D~~~~~~~~~  127 (229)
                      ++||-.| |+|..+.+|++++-.       ....|+|+|..+-               ...+++.++ ++|+++......
T Consensus         2 K~vLITG-atGfiGs~lv~~Ll~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~   72 (357)
T d1db3a_           2 KVALITG-VTGQDGSYLAEFLLE-------KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH-YGDLSDTSNLTR   72 (357)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEECC---------------------CCEEEC-CCCSSCHHHHHH
T ss_pred             CEEEEeC-CCcHHHHHHHHHHHH-------CcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEE-EeecCCHHHHHH
Confidence            3455555 459888888877642       2358999997420               012367888 999999765443


Q ss_pred             HHHHhCCCCccEEEeCCCC
Q psy1489         128 LVTILKDDKLDVVLSDMAP  146 (229)
Q Consensus       128 i~~~~~~~~~D~V~sd~~~  146 (229)
                      +   +.+..+|.|+.-++.
T Consensus        73 ~---~~~~~~d~v~h~aa~   88 (357)
T d1db3a_          73 I---LREVQPDEVYNLGAM   88 (357)
T ss_dssp             H---HHHHCCSEEEECCCC
T ss_pred             H---HhccCCCEEEEeecc
Confidence            3   334568999976544

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=8.5  Score=28.80  Aligned_cols=77  Identities=10%  Similarity=0.162  Sum_probs=48.7

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---------CC-CCCeEEecCCCCChhHHHHH
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---------PI-DGAVVLSKCDFTQPDIQDRL  128 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---------~~-~~~~~~~~~D~~~~~~~~~i  128 (229)
                      +|+.||-.|++. +++..+++.+..       ...+|+.+|.++  +.         .. ..+.++ ++|+++++....+
T Consensus         9 k~Kv~lITGas~-GIG~aiA~~la~-------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~-~~Dls~~~~v~~~   79 (257)
T d1xg5a_           9 RDRLALVTGASG-GIGAAVARALVQ-------QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPY-RCDLSNEEDILSM   79 (257)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE-ECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE-EccCCCHHHHHHH
Confidence            367889889775 455666665532       235899999875  11         11 246677 8999997644433


Q ss_pred             HHHhC--CCCccEEEeCCCC
Q psy1489         129 VTILK--DDKLDVVLSDMAP  146 (229)
Q Consensus       129 ~~~~~--~~~~D~V~sd~~~  146 (229)
                      .+...  -+..|+++.++..
T Consensus        80 v~~~~~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          80 FSAIRSQHSGVDICINNAGL   99 (257)
T ss_dssp             HHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHhcCCCCEEEecccc
Confidence            22221  1469999998754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.54  E-value=6.4  Score=29.30  Aligned_cols=77  Identities=22%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             CCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489          61 PGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------PIDGAVVLSKCDFTQPDIQDRLVT  130 (229)
Q Consensus        61 ~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~~~~~~~~~~~D~~~~~~~~~i~~  130 (229)
                      +|+++|--|++.+ ++...+++++..       ...+|+..|.++-.         .......+ +.|+.+.+..+.+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~-------~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~   78 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKE-------AGAEVALSYQAERLRPEAEKLAEALGGALLF-RADVTQDEELDALFA   78 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHH-------TTCEEEEEESSGGGHHHHHHHHHHTTCCEEE-ECCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH-------CCCEEEEEeCcHHHHHHHHHhhhccCccccc-ccccCCHHHHHHHHH
Confidence            5789999998764 567666666542       23588888877511         11246677 899999765444332


Q ss_pred             HhC--CCCccEEEeCCC
Q psy1489         131 ILK--DDKLDVVLSDMA  145 (229)
Q Consensus       131 ~~~--~~~~D~V~sd~~  145 (229)
                      ...  -+..|+++.++.
T Consensus        79 ~~~~~~g~iDilVnnag   95 (256)
T d1ulua_          79 GVKEAFGGLDYLVHAIA   95 (256)
T ss_dssp             HHHHHHSSEEEEEECCC
T ss_pred             HHHHhcCCceEEEeccc
Confidence            211  147999998764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=81.01  E-value=0.48  Score=35.63  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP  104 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~  104 (229)
                      .+|+.|||--||+|..+.+ |..++          -+.+|+|+++
T Consensus       211 ~~gd~VlDpF~GSGTT~~a-a~~~~----------R~~ig~El~~  244 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIV-AKKLG----------RNFIGCDMNA  244 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHH-HHHTT----------CEEEEEESCH
T ss_pred             CCCCEEEECCCCchHHHHH-HHHcC----------CeEEEEeCCH
Confidence            5899999999999987766 44443          5899999986

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.69  E-value=6.7  Score=29.39  Aligned_cols=77  Identities=16%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC----CC-CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY----PI-DGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~----~~-~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +|+.+|--|++ +++...+++.+..       ...+|+.+|.++  +.    .+ ....++ +.|+++....+.+.+...
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~-------~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~~~~~~~~~~   75 (253)
T d1hxha_           5 QGKVALVTGGA-SGVGLEVVKLLLG-------EGAKVAFSDINEAAGQQLAAELGERSMFV-RHDVSSEADWTLVMAAVQ   75 (253)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH-------TTCEEEEECSCHHHHHHHHHHHCTTEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHhCCCeEEE-EeecCCHHHHHHHHHHHH
Confidence            47788877855 5566666665542       235899999875  11    11 245677 899999765544433221


Q ss_pred             --CCCccEEEeCCCC
Q psy1489         134 --DDKLDVVLSDMAP  146 (229)
Q Consensus       134 --~~~~D~V~sd~~~  146 (229)
                        -+..|+++.++..
T Consensus        76 ~~~g~iDilVnnAG~   90 (253)
T d1hxha_          76 RRLGTLNVLVNNAGI   90 (253)
T ss_dssp             HHHCSCCEEEECCCC
T ss_pred             HHhCCCCeEEecccc
Confidence              1578999998864

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=80.55  E-value=4.8  Score=30.66  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=47.4

Q ss_pred             eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeC-CCC---------CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489          64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDK-LPI---------YPIDGAVVLSKCDFTQPDIQDRLVTILK  133 (229)
Q Consensus        64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~-~~~---------~~~~~~~~~~~~D~~~~~~~~~i~~~~~  133 (229)
                      +||-.| |+|..+.++.+.+-.       ...+|+++|. +.-         ....+++++ .+|+++.+....+   +.
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~-------~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i-~~Di~~~~~l~~~---~~   69 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALS-------QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFV-HGDIRNKNDVTRL---IT   69 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEECCCSTTHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHH---HH
T ss_pred             EEEEEC-CCcHHHHHHHHHHHH-------CcCEEEEEECCCcccchhHHHHhhccCCcEEE-EcccCCHHHHHHH---HH
Confidence            577555 569999888876632       3358999984 221         124578999 9999997654433   33


Q ss_pred             CCCccEEEeCCCC
Q psy1489         134 DDKLDVVLSDMAP  146 (229)
Q Consensus       134 ~~~~D~V~sd~~~  146 (229)
                      +.++|.|+.-+++
T Consensus        70 ~~~~d~Vih~aa~   82 (338)
T d1orra_          70 KYMPDSCFHLAGQ   82 (338)
T ss_dssp             HHCCSEEEECCCC
T ss_pred             hcCCceEEeeccc
Confidence            4468999975543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.50  E-value=4.6  Score=30.13  Aligned_cols=75  Identities=19%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489          61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I----YPIDGAVVLSKCDFTQPDIQDRLVTILKD  134 (229)
Q Consensus        61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~  134 (229)
                      +|+++|--|++. ++...+++.+..       ...+|+.+|.++  +    ...+++..+ ..|+++.+..+.+.+.+  
T Consensus         4 ~GK~alITGas~-GIG~aia~~la~-------~Ga~V~~~~r~~~~l~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~--   72 (242)
T d1cyda_           4 SGLRALVTGAGK-GIGRDTVKALHA-------SGAKVVAVTRTNSDLVSLAKECPGIEPV-CVDLGDWDATEKALGGI--   72 (242)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHH-------TTCEEEEEESCHHHHHHHHHHSTTCEEE-ECCTTCHHHHHHHHTTC--
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHhcCCCeEE-EEeCCCHHHHHHHHHHc--
Confidence            478888888665 466666665542       236899999875  1    134678888 99999987655554433  


Q ss_pred             CCccEEEeCCCC
Q psy1489         135 DKLDVVLSDMAP  146 (229)
Q Consensus       135 ~~~D~V~sd~~~  146 (229)
                      ++.|+++.++..
T Consensus        73 g~iDilVnnAg~   84 (242)
T d1cyda_          73 GPVDLLVNNAAL   84 (242)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            579999998753

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.38  E-value=4  Score=31.93  Aligned_cols=72  Identities=15%  Similarity=0.040  Sum_probs=49.4

Q ss_pred             CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489          60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKDD  135 (229)
Q Consensus        60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~  135 (229)
                      ..+++||-.| |+|.++..++..+-.       ....|+++|.....    ......+. .+|+.+.+...   ..+  .
T Consensus        13 ~~nMKILVTG-gsGfIGs~lv~~L~~-------~g~~V~~~d~~~~~~~~~~~~~~~~~-~~D~~~~~~~~---~~~--~   78 (363)
T d2c5aa1          13 SENLKISITG-AGGFIASHIARRLKH-------EGHYVIASDWKKNEHMTEDMFCDEFH-LVDLRVMENCL---KVT--E   78 (363)
T ss_dssp             TSCCEEEEET-TTSHHHHHHHHHHHH-------TTCEEEEEESSCCSSSCGGGTCSEEE-ECCTTSHHHHH---HHH--T
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHHHHH-------CcCEEEEEeCCCccchhhhcccCcEE-EeechhHHHHH---HHh--h
Confidence            4589999888 899999888876642       23589999976522    23456777 89998865332   223  3


Q ss_pred             CccEEEeCCC
Q psy1489         136 KLDVVLSDMA  145 (229)
Q Consensus       136 ~~D~V~sd~~  145 (229)
                      .+|.|+.-+.
T Consensus        79 ~~d~Vih~a~   88 (363)
T d2c5aa1          79 GVDHVFNLAA   88 (363)
T ss_dssp             TCSEEEECCC
T ss_pred             cCCeEeeccc
Confidence            6898887553

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=80.35  E-value=1.8  Score=31.11  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=50.6

Q ss_pred             cCCCCeeEeecCCCC---chHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CC--CCC-eEEecCCCCChhHHH
Q psy1489          59 LRPGLKVLDCGAAPG---SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PI--DGA-VVLSKCDFTQPDIQD  126 (229)
Q Consensus        59 ~~~g~~VLDlGcGpG---~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~--~~~-~~~~~~D~~~~~~~~  126 (229)
                      +++|++||=+.+|+|   ..+..+++..|          .+|+++-.++-.      .+  -++ .++...+....+...
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~G----------a~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~   95 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLN----------FNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGP   95 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHT----------CEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcC----------CeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHH
Confidence            678998888855554   45566777765          578776433200      00  022 122011001111222


Q ss_pred             HHHHH--hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489         127 RLVTI--LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK  183 (229)
Q Consensus       127 ~i~~~--~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~  183 (229)
                      .+.+.  ..+..+|+|+-...                  ...+..+.+.|+|+|++++.
T Consensus        96 ~v~~~~~~~g~~vdvv~D~vg------------------~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          96 TIKEWIKQSGGEAKLALNCVG------------------GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHHHTCCEEEEEESSC------------------HHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHhhccCCceEEEECCC------------------cchhhhhhhhhcCCcEEEEE
Confidence            22222  12457999996221                  12234577899999999864