Psyllid ID: psy14915
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1046 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ES00 | 1173 | Ubiquitin conjugation fac | yes | N/A | 0.825 | 0.735 | 0.493 | 0.0 | |
| O95155 | 1302 | Ubiquitin conjugation fac | no | N/A | 0.825 | 0.662 | 0.496 | 0.0 | |
| Q09349 | 980 | Probable ubiquitin conjug | yes | N/A | 0.746 | 0.796 | 0.317 | 1e-101 | |
| Q9HE05 | 1010 | Ubiquitin conjugation fac | yes | N/A | 0.679 | 0.703 | 0.331 | 1e-99 | |
| Q9LF41 | 1038 | Probable ubiquitin conjug | yes | N/A | 0.739 | 0.745 | 0.303 | 2e-99 | |
| P54860 | 961 | E4 ubiquitin-protein liga | yes | N/A | 0.746 | 0.812 | 0.298 | 9e-87 | |
| Q14139 | 1066 | Ubiquitin conjugation fac | no | N/A | 0.732 | 0.718 | 0.272 | 1e-65 | |
| A5PKG6 | 1067 | Ubiquitin conjugation fac | no | N/A | 0.661 | 0.648 | 0.274 | 1e-65 | |
| Q5R9G3 | 1066 | Ubiquitin conjugation fac | no | N/A | 0.732 | 0.718 | 0.271 | 2e-65 | |
| Q6P7A2 | 1066 | Ubiquitin conjugation fac | no | N/A | 0.650 | 0.637 | 0.275 | 9e-64 |
| >sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3 | Back alignment and function desciption |
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Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/880 (49%), Positives = 597/880 (67%), Gaps = 17/880 (1%)
Query: 175 TCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMS-- 232
T +L + + RV EE+ PK CS +L +R+Q + H+ LVLQ + + P S
Sbjct: 295 TDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQ 354
Query: 233 --SPLVKPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADPDYSK 290
S LV ++ + LP GF+ + V T ++DEE FKQ+ PILQG+ A E S+ +
Sbjct: 355 QPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDYFKY 414
Query: 291 PLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSISVFAE 350
PL AL +L E + G P+C+ + S + P+ + GRE+ SYLG FFS SVFAE
Sbjct: 415 PLMALGELCETKFG-KTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAE 473
Query: 351 DDVKVGNHFFS--SVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNPTRETMLGYLA 408
DD KV +FS ++T N + + +LQ+ L+L R L++I H++L N TRE L Y+A
Sbjct: 474 DDAKVVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMA 533
Query: 409 ALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSEMLSF 468
ALV N K+AQ+Q+++ ++ DGFMLNLL V Q LS KI L VD Y FHP ++
Sbjct: 534 ALVNANMKKAQMQADDRLVSTDGFMLNLLWVLQQLSTKIKLETVDPTYIFHPRCR--ITL 591
Query: 469 KND-TRLKMSSQEVEDWLASL--SSTAWREPKFSSTCWFLTLHCTHLSLLPALAKYQRRV 525
ND TR+ + ++V + L L + EPKF + C+FLTLH HLS+LP+ +Y RR+
Sbjct: 592 PNDETRINATMEDVNERLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRL 651
Query: 526 RSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGLLDKNLM 585
R++R+L + V++L + E W+ + +A R+++ LKR K Q+KKL R KACADAGLLD++ +
Sbjct: 652 RAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFL 711
Query: 586 KKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQY 645
++ FY + + +LR++ + ++TLPL S V FAALPE+YVED+AEFL F +QY
Sbjct: 712 RRCLNFYGLLIQLMLRIL--DPAYPDVTLPLNSEVPKVFAALPEFYVEDVAEFLFFIVQY 769
Query: 646 IPGI--EDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLYDRIM 703
P + E +D V +L+V +C+ I+NPYL+AKL+EV+F++NP VQ RT ++ I
Sbjct: 770 SPQVLYEPCTQD-IVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIE 828
Query: 704 AHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQAFINES 763
H S++ L LMKFYTDVE TG++SEFYDKFTIRYHIS I K +W++ H F+ E
Sbjct: 829 NHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEF 888
Query: 764 KTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSRERQLA 823
+G QFV+++NML+NDTTFLLDESLESLKRIHE QE M+++ + +P +QQ +R+ QLA
Sbjct: 889 NSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLA 948
Query: 824 ADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLK 883
DER RSYL L ETVDMFH LT ++++PFLRPEL RL+AMLNFNLQQLCGPKC LK
Sbjct: 949 QDERVSRSYLALATETVDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLK 1008
Query: 884 VSSPDKYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFDDAADRMERRQILL 943
V +P+KYG++P++LL+QL DIYL LDC FA AIA D+RS+ KELF++ +M + I
Sbjct: 1009 VENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKS 1068
Query: 944 PSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVVMDRSV 1003
+++KF+ LA + EI N + E+DY+DAPDEFRDPLMDTLM DPV LPSG VMDRS+
Sbjct: 1069 TIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSI 1128
Query: 1004 IVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
I+RHLLNS TDPF+RQ L E L+P ELK++I+AW REK
Sbjct: 1129 ILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 1168
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Binds to the ubiquitin moieties of preformed conjugates and catalyzes ubiquitin chain assembly in conjunction with E1, E2, and E3. Mus musculus (taxid: 10090) |
| >sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2 | Back alignment and function description |
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| >sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1046 | ||||||
| 91088575 | 1126 | PREDICTED: similar to ubiquitination fac | 0.942 | 0.875 | 0.533 | 0.0 | |
| 383847205 | 1103 | PREDICTED: ubiquitin conjugation factor | 0.988 | 0.937 | 0.510 | 0.0 | |
| 307194472 | 1099 | Ubiquitin conjugation factor E4 B [Harpe | 0.818 | 0.778 | 0.585 | 0.0 | |
| 307169140 | 1108 | Ubiquitin conjugation factor E4 B [Campo | 0.907 | 0.856 | 0.533 | 0.0 | |
| 332017882 | 1108 | Ubiquitin conjugation factor E4 B [Acrom | 0.986 | 0.931 | 0.498 | 0.0 | |
| 242011956 | 1047 | ubiquitin conjugation factor E4 B, putat | 0.900 | 0.899 | 0.541 | 0.0 | |
| 380015736 | 1103 | PREDICTED: LOW QUALITY PROTEIN: ubiquiti | 0.986 | 0.935 | 0.501 | 0.0 | |
| 350406822 | 1103 | PREDICTED: ubiquitin conjugation factor | 0.987 | 0.936 | 0.499 | 0.0 | |
| 340721246 | 1103 | PREDICTED: ubiquitin conjugation factor | 0.987 | 0.936 | 0.499 | 0.0 | |
| 156550895 | 1166 | PREDICTED: ubiquitin conjugation factor | 0.818 | 0.734 | 0.573 | 0.0 |
| >gi|91088575|ref|XP_973165.1| PREDICTED: similar to ubiquitination factor E4 [Tribolium castaneum] gi|270011701|gb|EFA08149.1| hypothetical protein TcasGA2_TC005767 [Tribolium castaneum] | Back alignment and taxonomy information |
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Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/1075 (53%), Positives = 725/1075 (67%), Gaps = 89/1075 (8%)
Query: 25 RNDSSNSAQDMIGSSILFNSPSGRDDMIGSIGQKVNLGTSPMEIDKSVIKISEKPQAHGE 84
R+DS S+ M + SG D G+ ++ G ME+D++ ++ + P+
Sbjct: 80 RSDSETSSIHM-----EVDEASGCADKAGA-NTDIDSGFENMEVDETDVQKKDAPRQR-- 131
Query: 85 PMEVEIEPVREIKIVKAPSMEITPQIIENTICKILSVTYSQVDASNTILYLPQVASVLTE 144
+ + EIT + + T+ +IL T Q S + +YLPQ A+ +
Sbjct: 132 --------------TSSSATEITEEQLLATVLRILHSTLEQ--PSESRIYLPQTATDVKT 175
Query: 145 LKQNSVTITYQDLISQSLVEL-----------QDILLSKN-----------------NTC 176
Q S+ +D+IS +L+E+ +D++ S + +TC
Sbjct: 176 HPQTSI----RDIISNALMEIIVQISQGNNPFKDLIPSNDTADTSSINSLSPSPSPSHTC 231
Query: 177 -------------------VLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVR 217
L + Y RV EERN+PK+ SI P DVL EVR QLV
Sbjct: 232 PIPTLPIKRVEVAETPLNLALNYLMDCYNRVSVEERNHPKRSSIPPLSDVLTEVRAQLVH 291
Query: 218 HSILVLQS--TNSDPM----SSPLVKPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPIL 271
++ L+LQ +D + SPL+ P++ QTLP GFL++ V + + F V SP+L
Sbjct: 292 YTTLLLQGFIIANDELYKFGRSPLLSPILQQTLPRGFLTELVTRTHTNTSLFSSVFSPLL 351
Query: 272 QGVYKAMTEASIADPDYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGR 331
QG+Y+ M ASI ++ P++ L +L +IR GS P+C+ + QVQF E T A GR
Sbjct: 352 QGLYRMMQNASIVGEEHRMPIQTLFELADIRCGSR--PICTLITKQVQFMLEPCTPAQGR 409
Query: 332 EIAVTSYLGPFFSISVFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGFLYRICH 391
E+ TS+LGPF S+SVFAED+ KV FFS + ++KS+ TLQ L+ TR +RI H
Sbjct: 410 EVVRTSFLGPFLSVSVFAEDEPKVAEKFFSGNSS-SDKSLNHTLQLELENTRNLQHRIFH 468
Query: 392 TMLRNNPTRETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFK 451
+L N +R+ L YLA ++ +NEKRAQLQ EE +LAGDGFMLNLL+V Q LS KI L K
Sbjct: 469 YLLANPESRDGCLNYLAKVLKYNEKRAQLQMEERSLAGDGFMLNLLSVLQMLSMKIKLDK 528
Query: 452 VDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSST-AWREPKFSSTCWFLTLHCT 510
+D +YPFH ++ KNDTRLK +SQ+V WL SL T ++ P FS+ CWFLTLHC
Sbjct: 529 MDFLYPFH--SESLICIKNDTRLKYTSQDVATWLESLEKTHQFQTPNFSTICWFLTLHCH 586
Query: 511 HLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSR 570
HL+LLPAL KYQRR+R++RDLQKL+DE + E WR T A RNK F+KRWK Q+KKL++
Sbjct: 587 HLALLPALQKYQRRIRAIRDLQKLLDETVAAEAQWRNTPFANRNKQFIKRWKQQLKKLNK 646
Query: 571 SKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPE-FAALPE 629
SKACADAGLLDKNLM+++ +FY SVA+YLL +MT + PE F+ALPE
Sbjct: 647 SKACADAGLLDKNLMRRALIFYTSVAQYLLSLMTNMAPGSPVPSLPLPPNVPEAFSALPE 706
Query: 630 WYVEDIAEFLLFALQYIPG-IEDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISN 688
WYVEDIAEFLLFAL Y P I + +ED +TWLLVT+CS M+KNPYL+AKL+EV+FI
Sbjct: 707 WYVEDIAEFLLFALPYFPTVITENMEDSLITWLLVTICSSNMVKNPYLVAKLVEVVFIII 766
Query: 689 PDVQTRTSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKG 748
P Q R LYDR M+H+ S LPS LMKFYTDVETTGSSSEFYDKF+IRYHISLI+KG
Sbjct: 767 PTFQPRCEMLYDRFMSHEISRSVLPSALMKFYTDVETTGSSSEFYDKFSIRYHISLIIKG 826
Query: 749 MWESPIHRQAFINESKTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYA 808
MW S IHRQ +NESK+G QFVKFVNMLMNDTTFLLDESLESLKRIHE QEL+ DE ++
Sbjct: 827 MWNSAIHRQTLVNESKSGKQFVKFVNMLMNDTTFLLDESLESLKRIHEVQELISDEEKWS 886
Query: 809 AIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLN 868
+ +EQQ SR RQL ADERQCRSYLTL RETVDMFHYLTV+IKEPFLRPELV RL++MLN
Sbjct: 887 KMNSEQQQSRMRQLTADERQCRSYLTLARETVDMFHYLTVDIKEPFLRPELVDRLASMLN 946
Query: 869 FNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKEL 928
FNLQQLCGPKC +LKV +PDKYGW+PRRLL+QLVDIYLHLDC+EFAAA+A DERSFRK+L
Sbjct: 947 FNLQQLCGPKCKNLKVRNPDKYGWEPRRLLSQLVDIYLHLDCEEFAAALAGDERSFRKDL 1006
Query: 929 FDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLME 988
FDDAA R+ER I P +++F+ALA +A+ + N K + +DAPDEF+DPLMDTLM
Sbjct: 1007 FDDAAARLERLSIKTPVEIERFKALADKAYHVYQNNQKSDDWMSDAPDEFKDPLMDTLMT 1066
Query: 989 DPVTLPSGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
DPV LPSG VMDRSVI+RHLLNSSTDPF+RQPL ED L+P ELK++I WK EK
Sbjct: 1067 DPVLLPSGQVMDRSVIMRHLLNSSTDPFNRQPLTEDMLQPVNELKERIRIWKSEK 1121
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Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383847205|ref|XP_003699245.1| PREDICTED: ubiquitin conjugation factor E4 B-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|307194472|gb|EFN76764.1| Ubiquitin conjugation factor E4 B [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|307169140|gb|EFN61956.1| Ubiquitin conjugation factor E4 B [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|332017882|gb|EGI58542.1| Ubiquitin conjugation factor E4 B [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|242011956|ref|XP_002426709.1| ubiquitin conjugation factor E4 B, putative [Pediculus humanus corporis] gi|212510880|gb|EEB13971.1| ubiquitin conjugation factor E4 B, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|380015736|ref|XP_003691852.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|350406822|ref|XP_003487897.1| PREDICTED: ubiquitin conjugation factor E4 B-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|340721246|ref|XP_003399035.1| PREDICTED: ubiquitin conjugation factor E4 B-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|156550895|ref|XP_001602484.1| PREDICTED: ubiquitin conjugation factor E4 B-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1046 | ||||||
| ZFIN|ZDB-GENE-020205-1 | 1362 | ube4b "ubiquitination factor E | 0.828 | 0.636 | 0.496 | 1.7e-237 | |
| UNIPROTKB|F1P7I0 | 1312 | UBE4B "Uncharacterized protein | 0.824 | 0.657 | 0.501 | 1.3e-228 | |
| UNIPROTKB|J9P2H4 | 1173 | UBE4B "Uncharacterized protein | 0.824 | 0.734 | 0.501 | 1.3e-228 | |
| UNIPROTKB|F1NGY1 | 1182 | UBE4B "Uncharacterized protein | 0.826 | 0.730 | 0.498 | 2.3e-227 | |
| UNIPROTKB|O95155 | 1302 | UBE4B "Ubiquitin conjugation f | 0.824 | 0.662 | 0.500 | 4.9e-227 | |
| UNIPROTKB|A6QNS2 | 1362 | UBE4B "UBE4B protein" [Bos tau | 0.824 | 0.632 | 0.499 | 6.2e-227 | |
| UNIPROTKB|J9P9M3 | 1360 | UBE4B "Uncharacterized protein | 0.824 | 0.633 | 0.501 | 1e-226 | |
| RGD|1304738 | 1172 | Ube4b "ubiquitination factor E | 0.824 | 0.735 | 0.498 | 8.1e-225 | |
| UNIPROTKB|F1M8D6 | 1174 | Ube4b "Protein Ube4b" [Rattus | 0.824 | 0.734 | 0.496 | 6.5e-223 | |
| FB|FBgn0032467 | 1217 | CG9934 [Drosophila melanogaste | 0.782 | 0.672 | 0.478 | 2.9e-207 |
| ZFIN|ZDB-GENE-020205-1 ube4b "ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2175 (770.7 bits), Expect = 1.7e-237, Sum P(3) = 1.7e-237
Identities = 439/885 (49%), Positives = 606/885 (68%)
Query: 171 SKNNTCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDP 230
S T +L + + V EER PK CS +L +R+Q + H+ LVLQ + P
Sbjct: 479 SCKETEMLNYLIERFDSVGMEERKAPKMCSQPAVSQLLSNIRSQCISHAALVLQGALTQP 538
Query: 231 MS----SPLVKPLINQTLPNGFLSDFVCTLYEDEETFKQVMSPILQGVYKAMTEASIADP 286
+ S LV ++ + LP GF+ + V +++E+ FKQ+ PILQG+ A+ E S
Sbjct: 539 RAPLQPSLLVPYMLCRNLPYGFIQELVRMTHQEEDVFKQIFVPILQGLALAVKECSFDSD 598
Query: 287 DYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSIS 346
++ PL AL +L EI+ G PVC+ + S + P+ + GREI S+LG FFS+S
Sbjct: 599 NFKFPLMALAELCEIKFGKT-HPVCNLITSLPLWCPDPLSPGTGREIQRLSFLGAFFSLS 657
Query: 347 VFAEDDVKVGNHFFS--SVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNPTRETML 404
VFAEDD KVG+ +FS ++T N + + +LQ+ L+ RG L++I H +L N TRE L
Sbjct: 658 VFAEDDTKVGDKYFSGPAITMENTRVVSQSLQHYLESARGDLFKILHNILLNGETREAAL 717
Query: 405 GYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKIDLFKVDLMYPFHPNKSE 464
Y+AALV N K+AQ+Q+++ ++ DGFM+N L V Q LS KI L VD +Y FHP K
Sbjct: 718 SYMAALVNRNVKKAQMQTDDKLVSTDGFMMNFLWVLQQLSMKIKLETVDPLYIFHP-KCR 776
Query: 465 MLSFKNDTRLKMSSQEVEDWLASLSS--TAWREPKFSSTCWFLTLHCTHLSLLPALAKYQ 522
+ +TRLK + +E++ WL L T + EPKF + C+FLTLH HLS+LP +Y
Sbjct: 777 LNVSPEETRLKATMEELKSWLTELHEDPTKFSEPKFPTECFFLTLHAHHLSILPCCRRYI 836
Query: 523 RRVRSLRDLQ-KLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGLLD 581
RR+R++RDL + V+EL ++E W+ + +A R+++ LKR K Q+KKL RSKACADAGLLD
Sbjct: 837 RRLRAIRDLNSRTVEELKNSENQWKDSPLAGRHREMLKRCKTQLKKLVRSKACADAGLLD 896
Query: 582 KNLMKKSAVFYMSVAEYLLRVMTGEENLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLF 641
+NL+++ F+ V + +LR++ E +++LPL + FAALPE+Y+ED+AEF+LF
Sbjct: 897 ENLLRRCLQFFSMVIQLILRMV--EPAFPHVSLPLNPEIPKSFAALPEFYIEDVAEFMLF 954
Query: 642 ALQYIPGI--EDVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISNPDVQTRTSNLY 699
+QY P + E ED VT+L+V +CS IKNPYL+AKL+EVLF++NP VQ RT +
Sbjct: 955 IVQYFPQVLYEPCTED-IVTFLIVFICSQNYIKNPYLIAKLVEVLFVTNPAVQPRTQRFF 1013
Query: 700 DRIMAHKFS-SQFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMWESPIHRQA 758
+ + H S +Q +P+ LMKFYTDVE TG++SEFYDKFTIRYHIS I K +W++ H+
Sbjct: 1014 EMLENHPLSVNQLVPA-LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNINHQGT 1072
Query: 759 FINESKTGNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYAAIPAEQQLSR 818
F+ E +G QFV+++NML+NDTTFLLDESLESLKRIHE QE M+++ + +P EQQ SR
Sbjct: 1073 FLEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEIQEEMKNKEQWDLLPREQQQSR 1132
Query: 819 ERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPK 878
+ QL DER RSYL L ETVDMFH LT ++++PFLRPEL RL+AMLN+NLQQLCGPK
Sbjct: 1133 QSQLTQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNYNLQQLCGPK 1192
Query: 879 CNHLKVSSPDKYGWDPRRLLNQLVDIYLHLDCDEFAAAIAQDERSFRKELFDDAADRMER 938
C LKV +P+KYG++P++LL+QL DIYL LDC FA AIA D+RS+ +ELF++ +M +
Sbjct: 1193 CRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCPRFAKAIADDQRSYSRELFEEVISKMRK 1252
Query: 939 RQILLPSSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSGVV 998
I +++KF+ L + EI N + E+DY+DAPDEF+DPLMDTLM DPV LPSG +
Sbjct: 1253 AGIKSTIAIEKFKLLLEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVQLPSGNI 1312
Query: 999 MDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREK 1043
MDRS+I+RHLLNS TDPF+RQPL E L+P ELK++I+AW REK
Sbjct: 1313 MDRSIILRHLLNSPTDPFNRQPLTESMLEPVPELKERIQAWMREK 1357
|
|
| UNIPROTKB|F1P7I0 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P2H4 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NGY1 UBE4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O95155 UBE4B "Ubiquitin conjugation factor E4 B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QNS2 UBE4B "UBE4B protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P9M3 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| RGD|1304738 Ube4b "ubiquitination factor E4B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M8D6 Ube4b "Protein Ube4b" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0032467 CG9934 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q09349 | UBE4_CAEEL | No assigned EC number | 0.3172 | 0.7466 | 0.7969 | yes | N/A |
| Q9ES00 | UBE4B_MOUSE | No assigned EC number | 0.4931 | 0.8250 | 0.7357 | yes | N/A |
| Q9LF41 | UBE4_ARATH | No assigned EC number | 0.3030 | 0.7399 | 0.7456 | yes | N/A |
| Q9HE05 | UFD2_SCHPO | 6, ., 3, ., 2, ., - | 0.3310 | 0.6797 | 0.7039 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1046 | |||
| pfam10408 | 625 | pfam10408, Ufd2P_core, Ubiquitin elongating factor | 0.0 | |
| COG5113 | 929 | COG5113, UFD2, Ubiquitin fusion degradation protei | 1e-116 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 1e-28 | |
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 2e-22 |
| >gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core | Back alignment and domain information |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 250/641 (39%), Positives = 369/641 (57%), Gaps = 36/641 (5%)
Query: 339 LGPFFSISVFAEDDVKVGNHFFSSVTDLNNKSIQAT---LQNGLQLTRGFLYRICHTMLR 395
LGP S+S +D +V +FS + + I A L+ L L++I ++LR
Sbjct: 1 LGPLLSLSPLPDDFPEVAEKYFSDPNSRSKQQINALISSLRQTLSNLIDNLFQIFKSLLR 60
Query: 396 NNP-TRETMLGYLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALS--------DK 446
+P +RE L + A ++ N KR ++Q + TL+ DGFMLNL AV L K
Sbjct: 61 ASPESREKTLSWFAKIINLNHKRRKMQVDPKTLSSDGFMLNLTAVLLRLCQPFLDPTSSK 120
Query: 447 IDLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLT 506
ID K+D Y S+ + K +TRL +E +++ + S F + C+FLT
Sbjct: 121 ID--KIDPDY-LLRKLSKRIDIKEETRLNADEEEADEFYSEKSEEG--AKNFITECFFLT 175
Query: 507 LHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIK 566
L HL + P + KY+R +R L+ LQ ++EL + W LKR + Q++
Sbjct: 176 LRALHLGIGPLIEKYKRLLRELKRLQDELEELEQSRSNW----------AQLKRLEKQLE 225
Query: 567 KLSRSKACADAGLLDKNLMKKSAVFYMSVAEYLLRVM----TGEENLCNITLPLPSTVRP 622
LS K + LLD +L+++ F VA +LLRV E + LPLP V
Sbjct: 226 ILSAEKLSLEGFLLDPSLLQRLLQFLSFVAVWLLRVADPKNLYPEGQ-KLKLPLPKKVPE 284
Query: 623 EFAALPEWYVEDIAEFLLFALQYIPGIEDVVE-DRCVTWLLVTMCSPQMIKNPYLLAKLI 681
F LPE+++EDI +F+LF P + D ++ D + + ++ M SP+ IKNP+L AKL+
Sbjct: 285 AFKYLPEFFIEDIVDFILFLFSNSPLVLDYIKLDSIIEFCIIFMGSPEYIKNPHLKAKLV 344
Query: 682 EVLFISNPDVQTRTSN-LYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTIRY 740
E+LFI P + L D H + + L L+KFY DVE TG+S++FYDKF IRY
Sbjct: 345 EILFIGLPPLDNSQKGFLSDIFEGHPLAKEHLLPALLKFYIDVEKTGASTQFYDKFNIRY 404
Query: 741 HISLILKGMWESPIHRQAFINESKTGNQ-FVKFVNMLMNDTTFLLDESLESLKRIHETQE 799
+IS IL+ +W++P +RQ ESK N FV+F+N+L+ND T+LLDESL LK I + Q+
Sbjct: 405 YISQILEYLWKNPSYRQQLRKESKENNDFFVRFINLLLNDATYLLDESLSYLKEIKQLQK 464
Query: 800 LMRDEAAYAAIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPEL 859
++D A + ++ E++ RE +L ERQ +SYL L ETV + LT EI +PFL PE+
Sbjct: 465 ELQDRAEWESLSQEEREERESELRQLERQAKSYLQLANETVKLLKLLTSEIPKPFLSPEI 524
Query: 860 VYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL-DCDEFAAAIA 918
V RL+AMLN+NL QL GPKC++LKV +P+KYG+DP++LL+ +VDIYL+L DEF A+A
Sbjct: 525 VDRLAAMLNYNLDQLVGPKCSNLKVKNPEKYGFDPKQLLSDIVDIYLNLSRSDEFIEAVA 584
Query: 919 QDERSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHE 959
+D RS+ ELF+ A + R + ++KF LA++ E
Sbjct: 585 RDGRSYSPELFEKAERILRRIGLKSEEDIEKFEELANKLEE 625
|
This is the most conserved part of the core region of Ufd2P ubiquitin elongating factor or E4, running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C-terminus, pfam04564, which has ligase activity. Length = 625 |
| >gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1046 | |||
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 100.0 | |
| KOG2042|consensus | 943 | 100.0 | ||
| PF10408 | 629 | Ufd2P_core: Ubiquitin elongating factor core; Inte | 100.0 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.84 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.56 | |
| KOG4692|consensus | 489 | 99.4 | ||
| KOG4642|consensus | 284 | 99.21 | ||
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 98.01 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 97.97 | |
| KOG0289|consensus | 506 | 97.96 | ||
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 97.75 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 96.69 | |
| KOG0823|consensus | 230 | 96.6 | ||
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 96.51 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 96.31 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 96.26 | |
| KOG0287|consensus | 442 | 96.23 | ||
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 96.13 | |
| KOG0317|consensus | 293 | 96.06 | ||
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 96.02 | |
| KOG2177|consensus | 386 | 95.48 | ||
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 94.77 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 94.75 | |
| KOG2979|consensus | 262 | 93.64 | ||
| KOG0883|consensus | 518 | 93.48 | ||
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 93.45 | |
| KOG3039|consensus | 303 | 92.41 | ||
| KOG0297|consensus | 391 | 91.87 | ||
| PF06416 | 113 | DUF1076: Protein of unknown function (DUF1076); In | 91.86 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 91.73 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 91.49 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 90.92 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 90.88 | |
| KOG0320|consensus | 187 | 90.7 | ||
| KOG4159|consensus | 398 | 90.41 | ||
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 90.4 | |
| KOG0826|consensus | 357 | 90.16 | ||
| KOG3039|consensus | 303 | 89.54 | ||
| PHA02926 | 242 | zinc finger-like protein; Provisional | 88.71 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 88.34 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 87.79 | |
| KOG2164|consensus | 513 | 86.83 | ||
| KOG0311|consensus | 381 | 85.4 | ||
| KOG0802|consensus | 543 | 85.13 | ||
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 84.34 |
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-163 Score=1370.95 Aligned_cols=899 Identities=25% Similarity=0.341 Sum_probs=791.6
Q ss_pred HHHHHHHHHHheeeeccCCCCCCeeeccchHHHHHHhhcCCccCChHHHHHHHHHHHhhhhhccCcccchhhhHHHHH-H
Q psy14915 109 QIIENTICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDILLSKNNTCVLGHYTASYA-R 187 (1046)
Q Consensus 109 e~~~~~l~~If~vTl~~~~~~~~lvyL~~la~el~e~~~~~~~l~~~d~l~~~l~e~~~~~~~p~~~~~~~YL~~c~~-R 187 (1046)
+|++++-+.++.||.+|+|.. -++| +.++. ..+|..+.. +.+|.+|+-.++. ....+|+||.+||+ +
T Consensus 4 ~~M~~ie~~~l~it~~p~D~~--~y~l--fk~~e---~~~gS~l~~-n~~d~~LL~~l~~----~~nn~fsYl~~s~~fl 71 (929)
T COG5113 4 PGMNRIELYELFITGMPADMD--PYEL--FKEAE---CIRGSYLTN-NSSDNILLTLLPR----YKNNTFSYLQESAKFL 71 (929)
T ss_pred cccchhhhhhhhcccCccccc--hhhh--cchhh---ccccCcccc-ccHHHHHHHHccc----cCCCchHHHHHHHHHH
Confidence 588999889999999998744 2555 33433 223445654 6888898766442 23568999999999 5
Q ss_pred HHHHHhhCCCCCCCcchHHHHHHHHHHHHhhhhhhccccCCCCCCccchhh---hh-hCCCChhHHHHHHHHHhcChhhH
Q psy14915 188 VFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMSSPLVKP---LI-NQTLPNGFLSDFVCTLYEDEETF 263 (1046)
Q Consensus 188 ~~~~~r~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~~~~~~~~~~ll~~---~l-~~~l~~~Fl~e~v~~~~~d~~~l 263 (1046)
.+..+|..+.+......+.-++.|.+|.++|+|.++..++-. .+..+.. +. .-++|-.|+.+++.|-....+.+
T Consensus 72 ~q~~kri~kn~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~F--N~e~i~~ieg~~~~~~~p~~fls~f~qr~l~e~~nl 149 (929)
T COG5113 72 IQTIKRIVKNPEMAGSAHSPVALIPLLTNTYGGSVFDVMECF--NSEKISEIEGMARKMLLPMIFLSSFKQRQLDEASNL 149 (929)
T ss_pred HHHHHHhcCCccccccccchHHHHHHHHhhccceEeehHhhc--chhHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhH
Confidence 555555433333445567789999999999999988655522 1223322 22 24688899999999955444569
Q ss_pred HHhHHHHHHHHHHHhhccCcCCCCccchHHHHHHHHhcccCCCchhhHHHhhhCcccCCCCccchhhhhhhhhccccccc
Q psy14915 264 KQVMSPILQGVYKAMTEASIADPDYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFF 343 (1046)
Q Consensus 264 ~~if~~i~~~l~~~~~~~~l~~~~~~~~l~~l~~L~~~~~~~~~kpia~~l~~~~~f~p~~~~~~~g~~~e~~SlLGpff 343 (1046)
+..|.++++.+....+.+.. +....+.+.++..|++ .||||.++.+.|.|.|+ ..+.+||.+|+|||+.
T Consensus 150 d~lF~~~LE~l~~~~g~~~~-dtV~~NVm~I~~~lv~------~kPia~v~~k~p~~~~t----~~p~~fe~kt~lG~i~ 218 (929)
T COG5113 150 DNLFTSALEALTGLHGVLEE-DTVLKNVMEIYWGLVN------TKPIADVILKFPIYSGT----NFPCGFEYKTLLGFIE 218 (929)
T ss_pred HHhhHHHHHHHhhhcccchH-HHHHHHHHHHHHHHhc------CccHHHHhhcCcccCCC----CCCCCCcceeeccccc
Confidence 99999999999998887775 3333345666667775 48999999999999986 4456799999999999
Q ss_pred ccCcCCCcchhhhhccCCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhhhhhhh
Q psy14915 344 SISVFAEDDVKVGNHFFSSVTDLN---NKSIQATLQNGLQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHNEKRAQ 419 (1046)
Q Consensus 344 ~lS~l~~~~p~v~~~yF~~~~~~~---~~~~~~slq~~l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N~~R~~ 419 (1046)
++|++ ..+||.+||++...++ +..+.++||.+|..+++.||+|+++|+| |.+.|+.+++|||.++|+||+|++
T Consensus 219 sls~~---~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~lvr~S~~lr~~~~~yfa~v~n~nh~R~~ 295 (929)
T COG5113 219 SLSYK---KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHSLVRSSKELRANFMKYFAKVINVNHERSK 295 (929)
T ss_pred ccchh---hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccchhhcc
Confidence 99999 7789999998877665 6678999999999999999999999999 678999999999999999999999
Q ss_pred hcccccCccchhhHHhHHHHHHHhhccc------ccCcccCCCcCCCCCCccccCCccccccCChHHHHHHHhhccCCCC
Q psy14915 420 LQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAW 493 (1046)
Q Consensus 420 ~q~d~~~~aSDGFmlNl~~VL~rLc~p~------Ki~kID~~Y~~~~~~~~rvdi~~ETrlna~~~e~~~~~~~~~~~~~ 493 (1046)
.|+..+...|||||.|++.||.||++|+ |||+||..| |+ |+ ||||++|||+|+|+.+++.||++. ..
T Consensus 296 ~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~Y-Fn-NP--~vDik~ETklN~d~k~~dsFy~K~---Ae 368 (929)
T COG5113 296 TIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIY-FN-NP--RVDIKEETKLNVDEKSLDSFYTKP---AE 368 (929)
T ss_pred ccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHh-hc-CC--ccccccchhcchhhhhhhccccCc---cc
Confidence 9999999999999999999999999994 999999999 55 67 999999999999999999999842 33
Q ss_pred CCCCcchhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcchhccccchHhHHhHHHHHHHHHHHHHHHHHHH
Q psy14915 494 REPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKA 573 (1046)
Q Consensus 494 ~~~nFitecFFLTl~~~HlG~~~~~~~~~~~~r~l~~l~~~~~~l~~~~~~~~~~P~~~~~~~~l~~~~~~l~~l~~~~~ 573 (1046)
+.+||||+||||+++.||||+++++.-..++...|+.++. +++.+.+...|+-++.|.-+.+.|+.+.++...+...
T Consensus 369 ~s~NFISD~FFl~lt~~HyGv~~tf~~~ek~g~~IrkLKE---~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~ 445 (929)
T COG5113 369 GSNNFISDIFFLYLTKIHYGVNATFTSCEKFGEYIRKLKE---SLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMS 445 (929)
T ss_pred cCCccchhhHHhHHHHHHhccchhHHHHHHHHHHHHHHHH---HHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHH
Confidence 5799999999999999999999999888888888776554 4444444445666787778889999999998888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcccCCCCCCCCccccccchHHHHHHHHHHHHHHhhCCCcc-
Q psy14915 574 CADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEE--NLCNITLPLPSTVRPEFAALPEWYVEDIAEFLLFALQYIPGIE- 650 (1046)
Q Consensus 574 ~~~~~L~dp~~l~~~l~F~~~~~~wL~rl~~~~~--~~~~~~lPLp~~~p~~f~~lPE~~vEdi~d~~~fi~r~~p~~l- 650 (1046)
|+++-|...++..+.+.|.++++.||.|+.+|+. |....+||+-+.+|.+|+|+|||+||++++|...+.++....+
T Consensus 446 al~gfl~~tsl~~~~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif 525 (929)
T COG5113 446 ALNGFLFMTSLFADEFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIF 525 (929)
T ss_pred HHHHHHHHhhhhhhccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchh
Confidence 9999999999999999999999999999997776 3446788988899999999999999999999999988776666
Q ss_pred hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhcC-CCCCCcchhHHHHHhhChhhhhhhHHHHHhhheeeeecCCC
Q psy14915 651 DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFISN-PDVQTRTSNLYDRIMAHKFSSQFLPSYLMKFYTDVETTGSS 729 (1046)
Q Consensus 651 ~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~~-p~~~~~~~~l~~~~~~~~~a~~~L~~aLm~fYidvE~TG~~ 729 (1046)
...++++++||.+++.+|++||||||++||+++|+.|. |.....+|.++++|...+++.++|+||||.|||+||+||+|
T Consensus 526 ~~~L~~l~Ef~~~vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqS 605 (929)
T COG5113 526 KKELEPLCEFVKIVLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQS 605 (929)
T ss_pred hccccchhhhhhhhcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcc
Confidence 55599999999999999999999999999999999985 55555667899999999999999999999999999999999
Q ss_pred CcchhhhchhhhHHHHHHHhcCChhHHHHHHHHhhc-cchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy14915 730 SEFYDKFTIRYHISLILKGMWESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDESLESLKRIHETQELMRDEAAYA 808 (1046)
Q Consensus 730 sqFYdKFn~Ry~I~~Ilk~LW~~~~~r~~l~~es~~-~~~FvrFvN~LiND~t~lLDE~L~~L~~I~~~q~~~~d~~~w~ 808 (1046)
+|||||||+||.|+.+++.+|+.|.|.+++..+.++ -++||||...++||+||+|||+|.+|.++|++|.+++|....+
T Consensus 606 tqfydkfNirf~ic~~~~~~yK~Psy~~~L~~~~~tN~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s 685 (929)
T COG5113 606 TQFYDKFNIRFIICMMKDFEYKQPSYSEGLSSIKDTNLPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS 685 (929)
T ss_pred cceeeeccceeehhHHHHHHhcCchhhhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC
Confidence 999999999999999999999999999999999875 6899999999999999999999999999999999999876544
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCchHHHHHHHHHHHHHHhhhhCCCccCccccCCc
Q psy14915 809 AIPAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPD 888 (1046)
Q Consensus 809 ~l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~peiv~RLA~MLnynL~~LvGpk~~~LkVknpe 888 (1046)
-..|+-++.+..|+.++||||++++|+++++.||+.++++||++|+.+|||+|||+||||||+.||||||.+||||+|+
T Consensus 686 -n~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~ 764 (929)
T COG5113 686 -NISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPE 764 (929)
T ss_pred -chhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChh
Confidence 3455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhcC-chHHHHHHhhcCccCCHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHhhhh
Q psy14915 889 KYGWDPRRLLNQLVDIYLHLD-CDEFAAAIAQDERSFRKELFDDAADRMERRQILLPSSLDKFRALASRAHEISVANIKK 967 (1046)
Q Consensus 889 kY~F~Pk~lL~~i~~IYlnL~-~~~F~~ava~D~Rsy~~elF~~a~~il~~~~l~~~~~i~~~~~l~~~v~~~~~~~~~~ 967 (1046)
+|+|+||.||+.++++|+||. ..+|++|||+|||||+.++|.+|.+|+.++.++++.+|+++.+|+.++++.+.....+
T Consensus 765 ~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~E 844 (929)
T COG5113 765 QYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVE 844 (929)
T ss_pred hcCCCHHHHHHHHHHHhhhhcchHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999996 5899999999999999999999999999999999999999999999999999888888
Q ss_pred hcccCCCCccccchhhhhhhcCccccC-CCCeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Q psy14915 968 EVDYNDAPDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKIEK 1046 (1046)
Q Consensus 968 e~~~~~~Pdef~cPI~~~lM~DPVilp-sg~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~~k 1046 (1046)
|+|+||+||||+||+|+++|+|||+|| ||.++||+||..||++|+||||||.||+.|||+||.+||++|..|.+.++.|
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~K 924 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQK 924 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999988775
|
|
| >KOG2042|consensus | Back alignment and domain information |
|---|
| >PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38 | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG4692|consensus | Back alignment and domain information |
|---|
| >KOG4642|consensus | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >KOG0289|consensus | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0823|consensus | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >KOG0287|consensus | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >KOG0317|consensus | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >KOG2177|consensus | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2979|consensus | Back alignment and domain information |
|---|
| >KOG0883|consensus | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >KOG3039|consensus | Back alignment and domain information |
|---|
| >KOG0297|consensus | Back alignment and domain information |
|---|
| >PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74) | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG0320|consensus | Back alignment and domain information |
|---|
| >KOG4159|consensus | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0826|consensus | Back alignment and domain information |
|---|
| >KOG3039|consensus | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >KOG2164|consensus | Back alignment and domain information |
|---|
| >KOG0311|consensus | Back alignment and domain information |
|---|
| >KOG0802|consensus | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1046 | ||||
| 3m62_A | 968 | Crystal Structure Of Ufd2 In Complex With The Ubiqu | 6e-88 | ||
| 2qiz_A | 982 | Structure Of The Yeast U-Box-Containing Ubiquitin L | 1e-87 | ||
| 2qj0_A | 982 | Structure Of The Yeast U-Box-Containing Ubiquitin L | 1e-83 | ||
| 2kre_A | 100 | Solution Structure Of E4bUFD2A U-Box Domain Length | 5e-29 | ||
| 2kr4_A | 85 | U-Box Domain Of The E3 Ubiquitin Ligase E4b Length | 1e-26 | ||
| 1wgm_A | 98 | Solution Structure Of The U-Box In Human Ubiquitin | 2e-18 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 2e-04 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 5e-04 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 6e-04 |
| >pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Rad23 Length = 968 | Back alignment and structure |
|
| >pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 | Back alignment and structure |
| >pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 | Back alignment and structure |
| >pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain Length = 100 | Back alignment and structure |
| >pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b Length = 85 | Back alignment and structure |
| >pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin Conjugation Factor E4a Length = 98 | Back alignment and structure |
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 711 bits (1836), Expect = 0.0
Identities = 246/974 (25%), Positives = 433/974 (44%), Gaps = 63/974 (6%)
Query: 114 TICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDILLSKN 173
I IL +T D L +E T+ D I L+ + ++
Sbjct: 10 AIEDILQITTDPSDTRGYSLLK-------SEEVPQGSTLG-VDFIDTLLLYQ--LTENEK 59
Query: 174 NTCVLGHYTASYARVFEEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQS---TNSDP 230
+ + R +++R K + E+ ++ + ++ LQ +
Sbjct: 60 LDKPFEYLNDCFRRNQQQKRITKNKPNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA 119
Query: 231 MSSPLVKPLINQTLPNGFLSDFVCTLYEDE---ETFKQVMSPILQGVYKAMTEASI-ADP 286
+ + + N FLS + + + V +L+ K ++ +
Sbjct: 120 FINYITGIVSNVNSYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESV 179
Query: 287 DYSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGPFFSIS 346
Y+ L + + P+ F + + K ++ + LGP S+S
Sbjct: 180 IYNNVLTIFELFVTFK------PIAEIFTKIDGFFADYSCK--PQDFERKTILGPILSLS 231
Query: 347 VFAEDDVKVGNHFFSSVTDLNNKSIQATLQNGLQLTRGFLYRICHTMLRNNP-TRETMLG 405
+ I +LQ ++ L+ I ++R + +R M+
Sbjct: 232 PIEAAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMIS 291
Query: 406 YLAALVGHNEKRAQLQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFH 459
Y A + N R L+ +GFM N+ + S + K+D Y +
Sbjct: 292 YFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNN 351
Query: 460 PNKSEMLSFKNDTRLKMSSQEVEDWLASLSSTAWREPKFSSTCWFLTLHCTHLSLLPALA 519
P+ + +TRL +E + + TA +P F S C+FLTL H L L+
Sbjct: 352 PSL--FIDLSGETRLNSDFKEADAFYDKNRKTADSKPNFISDCFFLTLTYLHYGLGGTLS 409
Query: 520 KYQRRVRSLRDLQKLVDELSSTEETWRGTVIARRNKDFLKRWKHQIKKLSRSKACADAGL 579
++ ++ L++ ++++ V AR L + + +K +
Sbjct: 410 FEEKMGSEIKALKEEIEKVKKIAANH--DVFARFITAQLSKMEKALKTTESLRFALQGFF 467
Query: 580 LDKNLMKKSAVFYMSVAEYLLRVMTGEENLCNITL------------------PLPSTVR 621
++L + F + +L+RV+ E + L +
Sbjct: 468 AHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAP 527
Query: 622 PEFAALPEWYVEDIAEFLLFALQYIPG--IEDVVEDRCVTWLLVTMCSPQMIKNPYLLAK 679
F PE+ VE + L+ +Y + V + + + P+++ NP+L K
Sbjct: 528 VPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGK 587
Query: 680 LIEVLFISNPDVQTRTSN-LYDRIMAHKFSSQFLPSYLMKFYTDVETTGSSSEFYDKFTI 738
L+++L + + + + D + ++ L L+ FY VE TGSSS+FYDKF
Sbjct: 588 LVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNS 647
Query: 739 RYHISLILKGMWES-PIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDESLESLKRIHE 796
RY IS+IL+ ++ P ++ I +S+ + FV+FV ++ND TFLLDE L +L +H
Sbjct: 648 RYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHN 707
Query: 797 TQELMRDEAAYAAIPAEQQLSR-ERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFL 855
Q + + A A E++ + +LA+ RQ +S L +++ +F + +I F+
Sbjct: 708 IQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFV 767
Query: 856 RPELVYRLSAMLNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHL-DCDEFA 914
PE+VYRL++MLN+NL+ L GPKC LKV P Y ++P+ LL L +Y++L + EF
Sbjct: 768 TPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSEFI 827
Query: 915 AAIAQDERSFRKELFDDAADRMERRQILL-PSSLDKFRALASRAHEISVANIKKEVDYND 973
+A+A+DERSF + LF A D + R+ L P ++K A++A E A+ +++++Y D
Sbjct: 828 SAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGD 887
Query: 974 APDEFRDPLMDTLMEDPVTLP-SGVVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEEL 1032
PDEF DPLM T+M+DPV LP S + +DRS I HLL+ STDPF+R PL +++ PNEEL
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEEL 947
Query: 1033 KKKIEAWKREKIEK 1046
++KI +K++K E+
Sbjct: 948 RQKILCFKKQKKEE 961
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1046 | |||
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 100.0 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.81 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.8 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.78 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.56 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.54 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.48 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.42 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.01 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 98.87 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 98.72 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 98.68 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 98.63 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 98.45 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 98.44 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 98.4 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 98.39 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 98.36 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 98.34 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 98.33 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 98.32 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 98.3 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 98.3 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 98.28 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 98.23 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 98.23 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 98.21 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 98.2 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 98.17 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 98.09 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 98.04 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 97.94 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 97.87 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 97.8 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 97.79 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 97.79 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 97.73 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 97.65 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 97.57 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 97.55 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 97.35 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 97.23 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 97.11 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 97.06 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 97.04 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 96.95 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 96.93 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 96.84 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 96.81 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 96.81 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 96.67 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 96.52 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 96.46 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 96.29 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 96.24 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 96.16 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 95.67 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 95.19 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 95.18 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 95.07 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 94.53 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 94.4 | |
| 2kkx_A | 102 | Uncharacterized protein ECS2156; methods developme | 93.11 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 93.02 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 92.67 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 91.81 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 91.09 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 90.17 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 89.99 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 89.17 |
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-216 Score=1944.15 Aligned_cols=910 Identities=27% Similarity=0.433 Sum_probs=828.9
Q ss_pred HHHHHHHHHheeeeccCCCCCCeeeccchHHHHHHhhcCCccCChHHHHHHHHHHHhhhhhccCcccchhhhHHHHHHHH
Q psy14915 110 IIENTICKILSVTYSQVDASNTILYLPQVASVLTELKQNSVTITYQDLISQSLVELQDILLSKNNTCVLGHYTASYARVF 189 (1046)
Q Consensus 110 ~~~~~l~~If~vTl~~~~~~~~lvyL~~la~el~e~~~~~~~l~~~d~l~~~l~e~~~~~~~p~~~~~~~YL~~c~~R~~ 189 (1046)
..-.+|++||+||+|+.. .++.+||+ ++|| . ++.+++ .|.+|++|||+++.. |+.+.||+||++||+||.
T Consensus 6 ~~~~~l~~if~vtl~~~~-~~~~~~~~--~~el---~-~~~~l~-~d~ld~~l~e~ls~~--~~~~~p~~YL~~c~~R~~ 75 (968)
T 3m62_A 6 RSMTAIEDILQITTDPSD-TRGYSLLK--SEEV---P-QGSTLG-VDFIDTLLLYQLTEN--EKLDKPFEYLNDCFRRNQ 75 (968)
T ss_dssp HHHHHHHHHHTEESSCCS-SSSCEECC--SCST---T-CCSCCC-GGGHHHHHHHHHHTC--SSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHeeecCccc-cCCceEee--HHHh---c-cCCCCC-hhhHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHH
Confidence 345679999999999864 45677777 6666 2 334688 599999999999864 444689999999999999
Q ss_pred HHHhhCCCCCCCcchHHHHHHHHHHHHhhhhhhccccCCCCCC--ccchhhhh-hCCCChhHHHHHHHHHhcChhhHHHh
Q psy14915 190 EEERNNPKKCSIFPFKDVLYEVRTQLVRHSILVLQSTNSDPMS--SPLVKPLI-NQTLPNGFLSDFVCTLYEDEETFKQV 266 (1046)
Q Consensus 190 ~~~r~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~~~~~~~~--~~ll~~~l-~~~l~~~Fl~e~v~~~~~d~~~l~~i 266 (1046)
+++|+.+++....++.++++++++||||||++++++|++.+.+ ..++..++ ..+.+.+||.|+++|+++|++ +.++
T Consensus 76 ~~~r~~~~~~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~~~~~~~~ll~~~~~~~~FL~~~i~r~~~d~~-l~~~ 154 (968)
T 3m62_A 76 QQKRITKNKPNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGAFINYITGIVSNVNSYTDFLSQIIQRAILEGT-ALDL 154 (968)
T ss_dssp HHHHHHHTSTTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCCHHHHHHHHHHTGGGTHHHHHHHHHHHHHHTC-HHHH
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCchHHHHHHHHhcccchHHHHHHHHHHhhhccc-HHHH
Confidence 9998876655667899999999999999999999999987654 22343333 335667999999999987653 5556
Q ss_pred HHHHH----HHHHHHhhccCcCCCC-ccchHHHHHHHHhcccCCCchhhHHHhhhCcccCCCCccchhhhhhhhhccccc
Q psy14915 267 MSPIL----QGVYKAMTEASIADPD-YSKPLEALTDLLEIRIGSNVWPVCSALVSQVQFQPELNTKAVGREIAVTSYLGP 341 (1046)
Q Consensus 267 f~~i~----~~l~~~~~~~~l~~~~-~~~~l~~l~~L~~~~~~~~~kpia~~l~~~~~f~p~~~~~~~g~~~e~~SlLGp 341 (1046)
|+|+| ..++..+.+++++++. |+.++.+|..|+++ ||||++|+++|+|+|+ ...+|++||+.|+|||
T Consensus 155 ~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~------kpia~~l~~~~~f~P~--~~~~g~~~E~~tlLGp 226 (968)
T 3m62_A 155 LNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTF------KPIAEIFTKIDGFFAD--YSCKPQDFERKTILGP 226 (968)
T ss_dssp HHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTS------HHHHHHGGGSTTSSCC--TTCCGGGHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCc------cHHHHHHHcCcccCCC--CCccHHHHHHHHhHHh
Confidence 55555 4557777888888764 88899999999975 8999999999999998 4578999999999999
Q ss_pred ccccCcCCCcchhhhhccCCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHhhhhh
Q psy14915 342 FFSISVFAEDDVKVGNHFFSSVTDLN---NKSIQATLQNGLQLTRGFLYRICHTMLR-NNPTRETMLGYLAALVGHNEKR 417 (1046)
Q Consensus 342 ff~lS~l~~~~p~v~~~yF~~~~~~~---~~~~~~slq~~l~~~~~~L~~I~~~Llr-~~~sRe~~L~w~a~~l~~N~~R 417 (1046)
||++||+ +|+|+.+||+++.+++ ++++++++|++++.++++||+|+++||| |+++|+++|+|||+|||+||+|
T Consensus 227 ~f~lS~l---~~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~~I~~~llr~s~etR~~~L~w~a~~ln~N~~R 303 (968)
T 3m62_A 227 ILSLSPI---EAAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLR 303 (968)
T ss_dssp HHTCCTT---SHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCGGG
T ss_pred hhhcccC---CcchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHhCcHH
Confidence 9999999 7899999999988776 7788999999999999999999999999 8999999999999999999999
Q ss_pred hhhcccccCccchhhHHhHHHHHHHhhccc------ccCcccCCCcCCCCCCccccCCccccccCChHHHHHHHhhccCC
Q psy14915 418 AQLQSEESTLAGDGFMLNLLAVFQALSDKI------DLFKVDLMYPFHPNKSEMLSFKNDTRLKMSSQEVEDWLASLSST 491 (1046)
Q Consensus 418 ~~~q~d~~~~aSDGFmlNl~~VL~rLc~p~------Ki~kID~~Y~~~~~~~~rvdi~~ETrlna~~~e~~~~~~~~~~~ 491 (1046)
|+||+|+.++||||||+|+++||+|||+|| |+||||++|+++.++ |+||++|||||+|++|+++||++....
T Consensus 304 ~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~~~--ridi~~ETrlna~~~e~~~~~~~~~~~ 381 (968)
T 3m62_A 304 RADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSL--FIDLSGETRLNSDFKEADAFYDKNRKT 381 (968)
T ss_dssp GSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSCCS--SSCCTTCCBSSCCHHHHHHHHHHHCCC
T ss_pred HhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCCCC--CCCCChhhhhcCCHHHHHHHHhhcccC
Confidence 999999999999999999999999999996 999999999887665 899999999999999999999875443
Q ss_pred CCCCCCcchhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcchhccccchHhHH-hHHHHHHHHHHHHHHHH
Q psy14915 492 AWREPKFSSTCWFLTLHCTHLSLLPALAKYQRRVRSLRDLQKLVDELSSTEETWRGTVIARR-NKDFLKRWKHQIKKLSR 570 (1046)
Q Consensus 492 ~~~~~nFitecFFLTl~~~HlG~~~~~~~~~~~~r~l~~l~~~~~~l~~~~~~~~~~P~~~~-~~~~l~~~~~~l~~l~~ 570 (1046)
.++++||||||||||++|||||+++++.+|+++.|+|+++++.++++++. |+++|.+.+ .++.+++++++++++.+
T Consensus 382 ~~~~~nFItecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~p~~~~~~~~~l~~~~~~l~~~~~ 458 (968)
T 3m62_A 382 ADSKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKI---AANHDVFARFITAQLSKMEKALKTTES 458 (968)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999975 677887666 47899999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcccCCCCC----------------CCCccccccchHHH
Q psy14915 571 SKACADAGLLDKNLMKKSAVFYMSVAEYLLRVMTGEEN--LCNITLPLPS----------------TVRPEFAALPEWYV 632 (1046)
Q Consensus 571 ~~~~~~~~L~dp~~l~~~l~F~~~~~~wL~rl~~~~~~--~~~~~lPLp~----------------~~p~~f~~lPE~~v 632 (1046)
.++|++++|+||.++.++++|++++++||+|++++.+. ..+++||||+ ++|++|+|+|||+|
T Consensus 459 ~k~~~~~~l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~i 538 (968)
T 3m62_A 459 LRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVV 538 (968)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHH
Confidence 99999999999999999999999999999999976543 3368899983 58999999999999
Q ss_pred HHHHHHHHHHHhhCCCcc--hhhhhHHHHHHHHHhCCCCCccChhhhhhHHHHhhhc-CCCCCCcchhHHHHHhhChhhh
Q psy14915 633 EDIAEFLLFALQYIPGIE--DVVEDRCVTWLLVTMCSPQMIKNPYLLAKLIEVLFIS-NPDVQTRTSNLYDRIMAHKFSS 709 (1046)
Q Consensus 633 Edi~d~~~fi~r~~p~~l--~~~~~~li~f~i~~l~s~~~ikNP~LraklvevL~~~-~p~~~~~~~~l~~~~~~~~~a~ 709 (1046)
|||+||++|+.|+.|+.+ ...++++++||++||+||+|||||||||||||+|+++ +|..+++.|.+.++|++|++++
T Consensus 539 Edi~d~~~F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~ 618 (968)
T 3m62_A 539 EGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVN 618 (968)
T ss_dssp HHHHHHHHHHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHH
T ss_pred HhHHHHHHHHHHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHH
Confidence 999999999999999866 5679999999999999999999999999999999975 6877777788899999999999
Q ss_pred hhhHHHHHhhheeeeecCCCCcchhhhchhhhHHHHHHHhc-CChhHHHHHHHHhhc-cchHHHHHHHHHhhhHHHHHHH
Q psy14915 710 QFLPSYLMKFYTDVETTGSSSEFYDKFTIRYHISLILKGMW-ESPIHRQAFINESKT-GNQFVKFVNMLMNDTTFLLDES 787 (1046)
Q Consensus 710 ~~L~~aLm~fYidvE~TG~~sqFYdKFn~Ry~I~~Ilk~LW-~~~~~r~~l~~es~~-~~~FvrFvN~LiND~t~lLDE~ 787 (1046)
+||++|||+||||||+||+|+||||||||||+|++||++|| ++|.||++|++++++ +++|+|||||||||+||||||+
T Consensus 619 ~~L~~aLm~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~~~~FvrFvNlLiND~tyLLDEs 698 (968)
T 3m62_A 619 KNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLNDLTFLLDEG 698 (968)
T ss_dssp HHHHHHHHHHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999975 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCC-CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhHHhcCCCCchHHHHHHHHH
Q psy14915 788 LESLKRIHETQELMRDEAAYAAI-PAEQQLSRERQLAADERQCRSYLTLGRETVDMFHYLTVEIKEPFLRPELVYRLSAM 866 (1046)
Q Consensus 788 L~~L~~I~~~q~~~~d~~~w~~l-~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~lT~~i~~~Fl~peiv~RLA~M 866 (1046)
|++|++||++|++++|.+.|... .+|+|+++++.++++||+||||++||++|++||++||+++|++|++||||+|||+|
T Consensus 699 L~~L~~I~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~M 778 (968)
T 3m62_A 699 LSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASM 778 (968)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHH
Confidence 99999999999999988777653 35678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCccCccccCCcccCCChHHHHHHHHHHHHhcC-chHHHHHHhhcCccCCHHHHHHHHHHHHHh-ccCCh
Q psy14915 867 LNFNLQQLCGPKCNHLKVSSPDKYGWDPRRLLNQLVDIYLHLD-CDEFAAAIAQDERSFRKELFDDAADRMERR-QILLP 944 (1046)
Q Consensus 867 LnynL~~LvGpk~~~LkVknpekY~F~Pk~lL~~i~~IYlnL~-~~~F~~ava~D~Rsy~~elF~~a~~il~~~-~l~~~ 944 (1046)
|||||++||||||++||||||+||+|+||+||.+||+||+||+ +++|++|||+|||||++++|++|++||+++ |++++
T Consensus 779 LnynL~~LvGPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~ 858 (968)
T 3m62_A 779 LNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASP 858 (968)
T ss_dssp HHHHHHHHHSHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTTCHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCH
T ss_pred HHHHHHHhcCccccccccCCHhhcCCCHHHHHHHHHHHHhhccCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCH
Confidence 9999999999999999999999999999999999999999995 789999999999999999999999999765 79999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccchhhhhhhcCccccCCC-CeecHHHHHHHHhcCCCCCCCCCCCCC
Q psy14915 945 SSLDKFRALASRAHEISVANIKKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFE 1023 (1046)
Q Consensus 945 ~~i~~~~~l~~~v~~~~~~~~~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg-~t~dR~~I~~hLl~~~~dPftr~pL~~ 1023 (1046)
+++++|.+|++++++.+++.+++|++++++|++|+||||.++|+|||++||| +||||++|++||.++++||+||+||+.
T Consensus 859 ~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 859 EFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 9999999999999999999888999999999999999999999999999987 799999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHhccC
Q psy14915 1024 DNLKPNEELKKKIEAWKREKIEK 1046 (1046)
Q Consensus 1024 ~~lipn~~Lk~~I~~w~~~~~~k 1046 (1046)
++|+||.+||++|++|+.+++++
T Consensus 939 ~~liPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 939 EDVTPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp GGCEECHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998754
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
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| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
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| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
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| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
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| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
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| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
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| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
| >2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
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| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1046 | ||||
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 2e-13 | |
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 7e-13 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 1e-07 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 2e-04 |
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (158), Expect = 2e-13
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFED 1024
++E Y DA DEF DP+M TLM DPV LPS V +DRS I RHLL+ TDPF+R PL D
Sbjct: 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70
Query: 1025 NLKPNEELKKKIEAWKREKIEK 1046
++PN ELK+KI+ W E+ ++
Sbjct: 71 QIRPNTELKEKIQRWLAERKQQ 92
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1046 | |||
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.82 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.69 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.68 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.19 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.61 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.58 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.46 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 97.38 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 97.14 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 96.82 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 96.09 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 94.94 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 94.36 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 93.11 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 89.91 |
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.5e-21 Score=178.83 Aligned_cols=81 Identities=56% Similarity=0.921 Sum_probs=75.6
Q ss_pred hhhcccCCCCccccchhhhhhhcCccccCCC-CeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHhc
Q psy14915 966 KKEVDYNDAPDEFRDPLMDTLMEDPVTLPSG-VVMDRSVIVRHLLNSSTDPFSRQPLFEDNLKPNEELKKKIEAWKREKI 1044 (1046)
Q Consensus 966 ~~e~~~~~~Pdef~cPI~~~lM~DPVilpsg-~t~dR~~I~~hLl~~~~dPftr~pL~~~~lipn~~Lk~~I~~w~~~~~ 1044 (1046)
++|.++.++|++|+|||+++||+|||++|+| ++|||++|.+||.++.+||+||++|+.++|+||.+||++|++|+++++
T Consensus 11 ~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~ 90 (98)
T d1wgma_ 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hhHhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999955 699999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy14915 1045 EK 1046 (1046)
Q Consensus 1045 ~k 1046 (1046)
.|
T Consensus 91 ~~ 92 (98)
T d1wgma_ 91 QQ 92 (98)
T ss_dssp TC
T ss_pred Hh
Confidence 65
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|