Psyllid ID: psy14945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSW
Secondary Structure (PSIPRED)
cccEEEcccccccccccEEEEEEcccccccccccccccEEEEEEEccEEEEEcccccEEcccHHHHHHHHHccccHHHHHHHHHHcEEccccccccccHHHHHHHHHHHHHHHHccccccccccEEcEEEEcccccccccccccEEEEEccccEEEcccccccccEEEEEEEEccccccccccccccccEEEEEccccccEEcccccccccEEccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHcccEEEEccccccHHHHHHHHccEEccccccccccccccccEEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccEEEEEEEEcccccccccccEEcccEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccEEEEEEccccccccEEEEEEEEEccccccccccEccccEEEEEcccEEEEccccccEEEEEcccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEccccEEccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcHccHHHEEccccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccEEEHHEEccc
Coil and Loop (DISEMBL)
mvelmemkhktpgdsclvkgvvldhgarhpdmpksvknaHILTCNISmeyeksgsgpwcatpghaqvreerahpdmqhqhgireegvvlnhgarhpdmpksvknaHILTCNISMEYEKSDVCIILVKGvvlnhgarhpdmpksvknaHILTCNISMEYEKSDVCIILVKGvvlnhgarhpdmpksvknaHILTCNISmeyekssqgghqpeiSLAKGIANQIQHPTASLIARASTamddmtgdgttSTVLVIGELLKQADIYIAEVNLKmhkfapdcstsdryrtgidpqslDLFAREGIIALRRAKRRNMERlslacggtamnsveglepahlgyagsvfehvlgeekftfveecknpqsvtillkgpnkhtlaqTKDAVRDGLRAIKNtiddgavvpgaGAFEVAAWHALQNYkntvkgksrLGIQAYAEALLIIpktiavnsgfDAQDTLVKLQEAcgeapgvavgvdvnsgevlnptsagiydnlTVKRQIINSWiisglhprviteGFTQARLKALEVLESlkittppsrEILLDVARTSLRTKVERELADLlaepnsvpslrnsatvnsgfDAQDTLVKLQEAcgeapgvavgvdvnsgevlnptsagiydnltVKRQIINSW
Flexible Loop (DISEMBL)
mvelmemkhktpgdsclVKGVVLDHGarhpdmpksvkNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGarhpdmpksvkNAHILTCNISMEYEKSDVCIILVKGVVLNHGarhpdmpksvkNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTgidpqsldlfAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVtillkgpnkhtlaQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLeslkittppsreilldVARTSLRTKVERELAdllaepnsvpslrnsATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEvlnptsagiydnltvkRQIINSW
Low Complexity Region (SEG)
MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARAstamddmtgdgttstVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSW
Disordered region (IsUnstruct)
***************CLVKGVVLDHG*********VKNAHILTCNISMEYE******WC******************************************VKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARH******VKNAHILTCNISM*******************************I************DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKV**************************FDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII***
Disordered Region (DISOPRED)
MVEL*****K****SCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWC***************DMQHQHGIREEG************PKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQA***************PPSREILLDVARTSLR*K**RELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEA*****GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS*
Disordered Region (DISEMBL)
MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREER********HGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEY********QPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSW
Disordered Region (DISPRO)
MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	629	2.2.26 [Sep-21-2011]
Q3MHL7	531	T-complex protein 1 subun	yes	N/A	0.503	0.596	0.501	1e-90
P80317	531	T-complex protein 1 subun	yes	N/A	0.488	0.578	0.504	3e-89
Q5ZJ54	530	T-complex protein 1 subun	yes	N/A	0.488	0.579	0.498	3e-89
O77622	531	T-complex protein 1 subun	yes	N/A	0.488	0.578	0.501	3e-89
Q5RCD2	531	T-complex protein 1 subun	yes	N/A	0.488	0.578	0.492	9e-89
P40227	531	T-complex protein 1 subun	yes	N/A	0.488	0.578	0.495	1e-88
Q3T084	531	T-complex protein 1 subun	no	N/A	0.542	0.642	0.465	6e-87
Q92526	530	T-complex protein 1 subun	no	N/A	0.500	0.594	0.486	3e-86
P46550	539	T-complex protein 1 subun	yes	N/A	0.494	0.576	0.486	2e-85
Q61390	531	T-complex protein 1 subun	no	N/A	0.518	0.613	0.458	6e-85

>sp|Q3MHL7|TCPZ_BOVIN T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=1 SV=3

 Score =  334 bits (857), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/357 (50%), Positives = 236/357 (66%), Gaps = 40/357 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+          +  G  
Sbjct: 199 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VNSGFF 249

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+      ++D         V  I EL K+                  C  
Sbjct: 250 YKSAEEREKLVKAERKFIED--------RVKKIIELKKKV-----------------CGD 284

Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
           SD+      + GIDP SLD  A+EGIIALRRAKRRNMERL+LACGG A+NS++ L P  L
Sbjct: 285 SDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCL 344

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN IDD
Sbjct: 345 GHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDD 404

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
           G VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLV
Sbjct: 405 GCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLV 464

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
           K+Q    E+ G  VGVD+N+GE +    AGI+DN  VK+Q+++S  +   +  ++ E
Sbjct: 465 KVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDE 520

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Bos taurus (taxid: 9913)

>sp|P80317|TCPZ_MOUSE T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3

 Score =  330 bits (845), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/347 (50%), Positives = 230/347 (66%), Gaps = 40/347 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V+NA+ILTCN+S+EYEK+          +  G  
Sbjct: 199 KSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTE---------VNSGFF 249

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+      ++D         V  I EL K+                  C  
Sbjct: 250 YKSAEEREKLVKAERKFIED--------RVKKIIELKKKV-----------------CGD 284

Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
           SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG A+NS + L P  L
Sbjct: 285 SDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGIALNSFDDLNPDCL 344

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN IDD
Sbjct: 345 GHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDD 404

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
           G VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLV
Sbjct: 405 GCVVPGAGAVEVALAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLV 464

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
           K+Q    E+ G  VGVD+++GE +     G++DN  VK+Q+++S  +
Sbjct: 465 KVQAEHSES-GQLVGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTV 510

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Mus musculus (taxid: 10090)

>sp|Q5ZJ54|TCPZ_CHICK T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3

 Score =  330 bits (845), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/347 (49%), Positives = 234/347 (67%), Gaps = 40/347 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+          ++ G  
Sbjct: 198 KSETDTTLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VSAGFF 248

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+      ++D         V  I +L ++                  C  
Sbjct: 249 YKSAEEREKLVKAERKFIED--------RVSKIIDLKRRV-----------------CGD 283

Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
           SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGGTAMNSVE L P  L
Sbjct: 284 SDKGFIVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTPDCL 343

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E+ LGEEK+TF+E+C NP+SVT+L++GPNKHTL Q KDAVRDGLRA+KN I+D
Sbjct: 344 GHAGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIED 403

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
           G V+PGAGA EVA  +AL  +K  VKG+++LG+QA+A+ALLIIPK +A NSG+D Q+TLV
Sbjct: 404 GCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQETLV 463

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
           K+Q    E+ G   GVD+N+GE +   +AGI+DN  VK+Q+++S  +
Sbjct: 464 KVQAEHAES-GQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTV 509

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Gallus gallus (taxid: 9031)

>sp|O77622|TCPZ_RABIT T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3

 Score =  330 bits (845), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/347 (50%), Positives = 231/347 (66%), Gaps = 40/347 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+          +  G  
Sbjct: 199 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VNSGFF 249

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+      ++D         V  I EL K+                  C  
Sbjct: 250 YKSAEEREKLVKAERKFIED--------RVKKIVELKKKV-----------------CGD 284

Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
           SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG  +NS++ L P  L
Sbjct: 285 SDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVPLNSLDDLNPDCL 344

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN IDD
Sbjct: 345 GHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDD 404

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
           G VVPGAGA EVA   AL  YK++VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLV
Sbjct: 405 GCVVPGAGAVEVAMAEALIKYKSSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLV 464

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
           K++    E+ G  VGVD+N+GE +     GI+DN  VK+Q+++S  +
Sbjct: 465 KIRTEHSES-GQLVGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTV 510

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5RCD2|TCPZ_PONAB T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3

 Score =  328 bits (841), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 171/347 (49%), Positives = 229/347 (65%), Gaps = 40/347 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+          +  G  
Sbjct: 199 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VNSGFF 249

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+      ++D                       I E+  K+      C  
Sbjct: 250 YKSAEEREKLVKAERKFIEDRVKK-------------------IIELKRKV------CGD 284

Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
           SD+      + GIDP SLD  ++EGI+ALRRAKRRNMERL+LACGG A+NS + L P  L
Sbjct: 285 SDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDQL 344

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDAVRDGLRA++N IDD
Sbjct: 345 GHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVRNAIDD 404

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
           G VVPGAGA EVA   AL  +K +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLV
Sbjct: 405 GCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLV 464

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
           K+Q    E+ G  VGVD+N+GE +     G++DN  VK+Q+++S  +
Sbjct: 465 KIQAEHSES-GQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTV 510

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Pongo abelii (taxid: 9601)

>sp|P40227|TCPZ_HUMAN T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3

 Score =  327 bits (839), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/347 (49%), Positives = 229/347 (65%), Gaps = 40/347 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+          +  G  
Sbjct: 199 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VNSGFF 249

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+      ++D                       I E+  K+      C  
Sbjct: 250 YKSAEEREKLVKAERKFIEDRVKK-------------------IIELKRKV------CGD 284

Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
           SD+      + GIDP SLD  ++EGI+ALRRAKRRNMERL+LACGG A+NS + L P  L
Sbjct: 285 SDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDCL 344

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDAVRDGLRA+KN IDD
Sbjct: 345 GHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDD 404

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
           G VVPGAGA EVA   AL  +K +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLV
Sbjct: 405 GCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLV 464

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
           K+Q    E+ G  VGVD+N+GE +     G++DN  VK+Q+++S  +
Sbjct: 465 KIQAEHSES-GQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTV 510

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Homo sapiens (taxid: 9606)

>sp|Q3T084|TCPW_BOVIN T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3

 Score =  322 bits (825), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 240/376 (63%), Gaps = 35/376 (9%)

Query: 136 RHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCN 195
           R P+ P  +    I+     M++ KS+    L+KG+VL+HGARHPDM K V +A ILTCN
Sbjct: 180 RRPNYPIDLFMVEIM----EMKH-KSETDTKLIKGLVLDHGARHPDMKKRVDDAFILTCN 234

Query: 196 ISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGEL 255
           +S+EYEK+              +++   + TA    +   A      D     + +  ++
Sbjct: 235 VSLEYEKTE-------------VSSGFFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKV 281

Query: 256 LKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLS 315
             Q++     +N K                GIDP SLD  A+ GI+ALRRAKRRNMERLS
Sbjct: 282 CAQSNKGFVVINQK----------------GIDPFSLDALAKHGILALRRAKRRNMERLS 325

Query: 316 LACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLA 375
           LACGG A+NSVE L    LG+AG V+E+ LGEEK+TF+E+C NP+SVT+L+KGPNKHTL 
Sbjct: 326 LACGGVAVNSVEDLSVDCLGHAGLVYEYTLGEEKYTFIEDCINPRSVTLLVKGPNKHTLT 385

Query: 376 QTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALL 435
           Q KDAVRDGLRAIKN I+DG VVPGAGA EV    AL  YK+T++G++RLG+QA+A+ALL
Sbjct: 386 QIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVIAEALVTYKHTIQGRARLGVQAFADALL 445

Query: 436 IIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI 495
           IIPK +A NSG+D Q+TLVK+Q     +    VG+D+N+GE +    AG++DN  VK+Q+
Sbjct: 446 IIPKVLAQNSGYDLQETLVKVQAEHSNSKQ-PVGIDLNTGEPMVAADAGVWDNYCVKKQL 504

Query: 496 INSWIISGLHPRVITE 511
           ++S  +   +  ++ E
Sbjct: 505 LHSCTVIATNILLVDE 520

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Bos taurus (taxid: 9913)

>sp|Q92526|TCPW_HUMAN T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=5

 Score =  320 bits (819), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/345 (48%), Positives = 227/345 (65%), Gaps = 30/345 (8%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L++G+VL+HGARHPDM K V++A IL CN+S+EYEK+              + +   + T
Sbjct: 206 LIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTE-------------VNSGFFYKT 252

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
           A    +   A      D     + +  ++  Q++     +N K                G
Sbjct: 253 AEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQK----------------G 296

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           IDP SLD  A+ GI+ALRRAKRRNMERLSLACGG A+NS E L    LG+AG V+E+ LG
Sbjct: 297 IDPFSLDSLAKHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLG 356

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           EEKFTF+EEC NP SVT+L+KGPNKHTL Q KDA+RDGLRAIKN I+DG +VPGAGA EV
Sbjct: 357 EEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEV 416

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
           A   AL  YKN++KG++RLG+QA+A+ALLIIPK +A N+G+D Q+TLVK+Q    E+  +
Sbjct: 417 AMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQL 476

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
            VGVD+N+GE +    AG++DN  VK+Q+++S  +   +  ++ E
Sbjct: 477 -VGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDE 520

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Homo sapiens (taxid: 9606)

>sp|P46550|TCPZ_CAEEL T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1

 Score =  317 bits (813), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/345 (48%), Positives = 229/345 (66%), Gaps = 34/345 (9%)

Query: 158 YEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKG 217
           +  SD+   LV+G+VL+HGARHPDMP+ VK+A+ILTCN+S+EYEK+          +  G
Sbjct: 197 HHDSDMDTTLVRGLVLDHGARHPDMPRHVKDAYILTCNVSLEYEKTE---------VNSG 247

Query: 218 IANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDC 277
           +  +      +L+A                      E + +    I E+  K+   +PD 
Sbjct: 248 LFYKTAKEREALLAAER-------------------EFITRRVHKIIELKKKVIDNSPDG 288

Query: 278 STSDRY---RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
                    + GIDP SLDL A EGI+ALRRAKRRNMERL LA GG A+NSV+ L P  L
Sbjct: 289 KNKGFVVINQKGIDPPSLDLLASEGILALRRAKRRNMERLQLAVGGEAVNSVDDLTPEDL 348

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+EH LGEEK+TF+EEC+ P+SVT+L+KGPNKHT+ Q KDA+ DGLRA+ NTI D
Sbjct: 349 GWAGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQIKDAIHDGLRAVFNTIVD 408

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
            AV+PGA AFE+AA+  L+     +KG+++LG +A+A+ALL+IPKT+AVN G+DAQ+TLV
Sbjct: 409 KAVLPGAAAFEIAAYVMLKKDVENLKGRAKLGAEAFAQALLVIPKTLAVNGGYDAQETLV 468

Query: 455 KL-QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
           KL +E     P +AVG+D+ +G  + P   GI+DN+TVK+  I+S
Sbjct: 469 KLIEEKTAAGPDIAVGLDLETGGAVEPQ--GIWDNVTVKKNSISS 511

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61390|TCPW_MOUSE T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4

 Score =  315 bits (807), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 170/371 (45%), Positives = 237/371 (63%), Gaps = 45/371 (12%)

Query: 136 RHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCN 195
           R P +P  +    I    + M + KS+    L++G+VL+HGARHP M K V++A+ILTCN
Sbjct: 180 RRPGVPIDLFMVEI----VEMRH-KSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCN 234

Query: 196 ISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGEL 255
           +S+EYEK+          ++ G   +       L+      ++D                
Sbjct: 235 VSLEYEKTE---------VSSGFFYKTVEEKEKLVKAERKFIEDRVQK------------ 273

Query: 256 LKQADIYIAEVNLKMHKFAPDCSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRN 310
                  I ++  K+      C+ S++      + GIDP SL++ A+  I+ALRRAKRRN
Sbjct: 274 -------IIDLKQKV------CAESNKGFVVINQKGIDPVSLEMLAKHNIVALRRAKRRN 320

Query: 311 MERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPN 370
           +ERL+LACGG A+NS EGL    LG+AG VFE+ LGEEKFTF+E+C NP SVT+L+KGPN
Sbjct: 321 LERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALGEEKFTFIEDCVNPLSVTLLVKGPN 380

Query: 371 KHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAY 430
           KHTL Q KDA+RDGLRA+KN I+DG VVPGAGA EVA   AL NYK+ V+G+ RLGIQA+
Sbjct: 381 KHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRVRLGIQAF 440

Query: 431 AEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLT 490
           A+ALLIIPK +A NSG+D Q+TL+K+Q    E+  + +G+D+N+GE +    AGI+DN  
Sbjct: 441 ADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKEL-LGIDLNTGEPMAAAEAGIWDNYC 499

Query: 491 VKRQIINSWII 501
           VK+ +++S  +
Sbjct: 500 VKKHLLHSCTV 510

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin (By similarity). May have specific functions in the folding of testicular proteins and for interactions with testicular molecular chaperones.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
193687012	531	PREDICTED: t-complex protein 1 subunit z	0.494	0.585	0.578	1e-102
307204030	531	T-complex protein 1 subunit zeta [Harpeg	0.476	0.564	0.570	1e-101
345494542	531	PREDICTED: T-complex protein 1 subunit z	0.476	0.564	0.564	1e-100
350407803	531	PREDICTED: T-complex protein 1 subunit z	0.476	0.564	0.579	1e-100
383856054	530	PREDICTED: T-complex protein 1 subunit z	0.468	0.556	0.559	1e-100
340717621	531	PREDICTED: t-complex protein 1 subunit z	0.476	0.564	0.576	1e-100
380030731	495	PREDICTED: T-complex protein 1 subunit z	0.468	0.595	0.556	7e-99
322785339	531	hypothetical protein SINV_03070 [Solenop	0.468	0.555	0.556	1e-98
307180413	531	T-complex protein 1 subunit zeta [Campon	0.468	0.555	0.550	2e-98
357628300	531	chaperonin subunit 6a zeta [Danaus plexi	0.476	0.564	0.565	2e-98

>gi|193687012|ref|XP_001946972.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Acyrthosiphon pisum]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/344 (57%), Positives = 240/344 (69%), Gaps = 33/344 (9%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           K+     LV+G+VL+HG+RHPDMP+ V+NA ILTCN+SMEYEKS              + 
Sbjct: 198 KTSTATTLVRGLVLDHGSRHPDMPRKVENAFILTCNVSMEYEKSE-------------VN 244

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
           +   + TA    + + A  D            I + +K+       + LK     P    
Sbjct: 245 SGFFYKTAEEREKLAIAERDF-----------IEQRVKKV------IELKRKVCPPGSGK 287

Query: 280 SDRY--RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA 337
           S     + GIDP SLD+ A+EGII LRRAKRRNMERLSLACGG+A+NSV+ L    LGYA
Sbjct: 288 SFVVINQKGIDPYSLDMLAKEGIIGLRRAKRRNMERLSLACGGSAVNSVDDLTEDVLGYA 347

Query: 338 GSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAV 397
           GSV+E+VLGE K+TFVE+CKNP SVTIL+K PNK+TLAQ KDA+ DGLRAIKN+IDDGAV
Sbjct: 348 GSVYEYVLGENKYTFVEDCKNPLSVTILIKAPNKYTLAQIKDAIHDGLRAIKNSIDDGAV 407

Query: 398 VPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ 457
           VPGAGAFE+ AW  LQ YK+ +KGKSRLGIQAYAEALLIIPKTI+ NSGFDAQD +VKLQ
Sbjct: 408 VPGAGAFEIYAWQELQKYKDEIKGKSRLGIQAYAEALLIIPKTISTNSGFDAQDMIVKLQ 467

Query: 458 EACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
           E C E  G  VGV+V+SGEVL P  AGI+DN  VK+QI+NS  I
Sbjct: 468 EECRENVG-PVGVNVDSGEVLQPVDAGIFDNYCVKKQILNSCTI 510

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204030|gb|EFN82934.1| T-complex protein 1 subunit zeta [Harpegnathos saltator]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/340 (57%), Positives = 234/340 (68%), Gaps = 40/340 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L++G+V +HG+RHPDMPK ++NA+ILTCN+S+EYEKS          +  G   +     
Sbjct: 206 LIRGIVTDHGSRHPDMPKRLENAYILTCNVSLEYEKSE---------VNSGFFYKSAEER 256

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY--- 283
             L+A     +D+                       I E+  K+      C  +D+    
Sbjct: 257 EKLVAAERVFIDNRVEK-------------------IIELKKKL------CDGTDKSFVV 291

Query: 284 --RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
             + GIDPQSLD+ A+E IIALRRAKRRNMERL+LACGG AMNSV+ L+  HLG+AG V+
Sbjct: 292 INQKGIDPQSLDMLAKENIIALRRAKRRNMERLALACGGVAMNSVDDLKEEHLGWAGLVY 351

Query: 342 EHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGA 401
           EHVLGE K+TF+EECK P SVTILLKGPNKHTL Q KDAVRDGLRA+KN IDD AV+PGA
Sbjct: 352 EHVLGETKYTFIEECKKPNSVTILLKGPNKHTLLQLKDAVRDGLRAVKNAIDDRAVIPGA 411

Query: 402 GAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG 461
           GAFEVAA  ALQ YK  VKGK RLG+QAYAEALL+IPKT+AVNSGFDAQDT+VKL E   
Sbjct: 412 GAFEVAASQALQQYKEKVKGKQRLGVQAYAEALLVIPKTLAVNSGFDAQDTIVKLFEE-S 470

Query: 462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
            A G AVG+D+++GE L P   GIYDN  VK+QIINS  I
Sbjct: 471 TALGEAVGLDLSTGEALKPADVGIYDNYNVKKQIINSCTI 510

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494542|ref|XP_001606486.2| PREDICTED: T-complex protein 1 subunit zeta-like isoform 2 [Nasonia vitripennis]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/340 (56%), Positives = 235/340 (69%), Gaps = 40/340 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LVKG+VL+HG+RHPDMPK ++N +ILTCN+S+EYEKS          +  G   +     
Sbjct: 206 LVKGLVLDHGSRHPDMPKKLENCYILTCNVSLEYEKSE---------VNSGFFYKTAEER 256

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY--- 283
             L+      +D+                       + E+  K+      C+ +D+    
Sbjct: 257 EKLVGAEREFIDNRVKK-------------------VIELKRKV------CNGTDKSFVL 291

Query: 284 --RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
             + GIDP SLD+ A+EGIIALRRAKRRNMERLSLACGG AMNS + L+  HLGYAG V+
Sbjct: 292 INQKGIDPPSLDMLAKEGIIALRRAKRRNMERLSLACGGQAMNSFDDLQEEHLGYAGLVY 351

Query: 342 EHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGA 401
           EHVLGE KFTFVEECK P SVTILLKGPNK+TL Q KDAV DGLRAIKN IDDG+V+PGA
Sbjct: 352 EHVLGENKFTFVEECKQPNSVTILLKGPNKYTLVQLKDAVYDGLRAIKNAIDDGSVIPGA 411

Query: 402 GAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG 461
           GAFEVAA  AL  YKN VKGK RLG+QA+AEALL+IPKT+AVNSGFD+QDT+VKLQE   
Sbjct: 412 GAFEVAANQALLQYKNEVKGKQRLGVQAFAEALLVIPKTLAVNSGFDSQDTIVKLQEE-S 470

Query: 462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
                AVG+D++SGE ++P +AGI+DN  VK+QIINS  +
Sbjct: 471 TTLNQAVGLDISSGEAIDPKAAGIFDNYIVKKQIINSCTV 510

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407803|ref|XP_003488200.1| PREDICTED: T-complex protein 1 subunit zeta-like isoform 1 [Bombus impatiens]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/340 (57%), Positives = 232/340 (68%), Gaps = 40/340 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV+G+V +HG+RHPDMPK V+NA+ILTCN+S+EYEKS          +  G   +     
Sbjct: 206 LVRGIVTDHGSRHPDMPKRVENAYILTCNVSLEYEKSE---------VNSGFFYKTAEER 256

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY--- 283
             L+A     +D+         V  I EL K+                  C  +D+    
Sbjct: 257 EKLVAAEREFIDN--------RVRKIIELKKKL-----------------CDGTDKSFVV 291

Query: 284 --RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
             + GIDP SLD+ ARE I+ALRRAKRRNMERL+LACGGTAMNS + L   HLG+AG V+
Sbjct: 292 INQKGIDPPSLDMLARENILALRRAKRRNMERLALACGGTAMNSFDDLTEEHLGWAGLVY 351

Query: 342 EHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGA 401
           EHVLGE K+TF+EECK P SVTILLKGPNK+TL Q KDAVRDGLRAIKN IDD AV+PGA
Sbjct: 352 EHVLGETKYTFIEECKKPNSVTILLKGPNKYTLEQLKDAVRDGLRAIKNAIDDRAVIPGA 411

Query: 402 GAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG 461
           GAFEVAA   L  YK  VKGK RLG+QAYAEALL+IPKT+AVNSGFDAQDT+VKL E   
Sbjct: 412 GAFEVAASQVLHQYKEKVKGKQRLGVQAYAEALLVIPKTLAVNSGFDAQDTIVKLLEE-R 470

Query: 462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
              G AVG+D++SGE L PT AGIYDN  VK+QIINS  I
Sbjct: 471 STLGEAVGLDISSGEALKPTDAGIYDNYNVKKQIINSCTI 510

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856054|ref|XP_003703525.1| PREDICTED: T-complex protein 1 subunit zeta-like isoform 1 [Megachile rotundata]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/345 (55%), Positives = 231/345 (66%), Gaps = 50/345 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV+G+V +HG+RHPDMPK V+NA+ILTCN+S+EYEKS          +  G   +     
Sbjct: 205 LVRGIVTDHGSRHPDMPKRVENAYILTCNVSLEYEKSE---------VNSGFFYKTAEER 255

Query: 227 ASLIARASTAMDDMTG----------DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD 276
             L+A     +D+             DGT  + +V+ +                      
Sbjct: 256 EKLVAAEREFIDNRVKKIIELKKKLCDGTNKSFVVVNQ---------------------- 293

Query: 277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY 336
                    GIDPQSLD+ A+E I+ALRRAKRRNMERL+LACGG AMNSV+ L+  HLG+
Sbjct: 294 --------KGIDPQSLDMLAKENILALRRAKRRNMERLALACGGMAMNSVDDLKEEHLGW 345

Query: 337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGA 396
           AG V+EHVLGE K+TF+EECK P SVTILLKGPNK+TL Q KDAVRDGLRAIKN IDDGA
Sbjct: 346 AGLVYEHVLGETKYTFIEECKKPNSVTILLKGPNKYTLEQLKDAVRDGLRAIKNAIDDGA 405

Query: 397 VVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL 456
           VVPGAGAFEVAA  AL  YK  VKGK RLG+QAYAEALLIIPK +AVNSGFDAQDT+VKL
Sbjct: 406 VVPGAGAFEVAANQALHQYKEKVKGKQRLGVQAYAEALLIIPKILAVNSGFDAQDTIVKL 465

Query: 457 QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
            E    + G  VG+D+++GE L P  AGI+DN  VK+QIINS  I
Sbjct: 466 LEEAS-SLGEPVGLDISTGEALKPADAGIFDNYNVKKQIINSSTI 509

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717621|ref|XP_003397279.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Bombus terrestris]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 232/340 (68%), Gaps = 40/340 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV+G+V +HG+RHPDMPK ++NA+ILTCN+S+EYEKS          +  G   +     
Sbjct: 206 LVRGIVTDHGSRHPDMPKRLENAYILTCNVSLEYEKSE---------VNSGFFYKTAEER 256

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY--- 283
             L+A     +D+         V  I EL K+                  C  +D+    
Sbjct: 257 EKLVAAEREFIDN--------RVRKIIELKKKL-----------------CDGTDKSFVV 291

Query: 284 --RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
             + GIDP SLD+ ARE I+ALRRAKRRNMERL+LACGGTAMNS + L   HLG+AG V+
Sbjct: 292 INQKGIDPPSLDMLARENILALRRAKRRNMERLALACGGTAMNSFDDLTEEHLGWAGLVY 351

Query: 342 EHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGA 401
           EHVLGE K+TF+EECK P SVTILLKGPNK+TL Q KDAVRDGLRAIKN IDD AV+PGA
Sbjct: 352 EHVLGETKYTFIEECKKPNSVTILLKGPNKYTLEQLKDAVRDGLRAIKNAIDDRAVIPGA 411

Query: 402 GAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG 461
           GAFEVAA   L  YK  VKGK RLG+QAYAEALL+IPKT+AVNSGFDAQDT+VKL E   
Sbjct: 412 GAFEVAASQILHQYKEKVKGKQRLGVQAYAEALLVIPKTLAVNSGFDAQDTIVKLLEE-R 470

Query: 462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
              G AVG+D++SGE L PT AGIYDN  VK+QIINS  I
Sbjct: 471 STLGEAVGLDISSGEALKPTDAGIYDNYNVKKQIINSCTI 510

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030731|ref|XP_003698996.1| PREDICTED: T-complex protein 1 subunit zeta-like [Apis florea]

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 192/345 (55%), Positives = 230/345 (66%), Gaps = 50/345 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+ G+V +HG+RHPDMPK V+NA+ILTCN+S+EYEKS          +  G   +     
Sbjct: 170 LILGIVTDHGSRHPDMPKRVENAYILTCNVSLEYEKSE---------VNSGFFYKTAEER 220

Query: 227 ASLIARASTAMDDMTG----------DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD 276
             L+A     +D+             DGT  + +VI +                      
Sbjct: 221 EKLVAAEREFIDNRVKKIIELKKKLCDGTDKSFVVINQ---------------------- 258

Query: 277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY 336
                    GIDPQSLD+ A+E I+ALRRAKRRNMERL+LACGGTAMNS + ++  HLG+
Sbjct: 259 --------KGIDPQSLDMLAQENILALRRAKRRNMERLALACGGTAMNSFDDIKEEHLGW 310

Query: 337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGA 396
           AG V+EHVLGE K+TF+EECK P SVTILLKGPNK+TL Q KDAVRDGLRAIKN IDD A
Sbjct: 311 AGLVYEHVLGETKYTFIEECKKPNSVTILLKGPNKYTLEQLKDAVRDGLRAIKNAIDDCA 370

Query: 397 VVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL 456
           V+PGAGAFEVAA   L  YK  VKGK RLG+QAYAEA+LIIPKT+AVNSGFDAQDT+VKL
Sbjct: 371 VIPGAGAFEVAASQTLHQYKEKVKGKQRLGVQAYAEAILIIPKTLAVNSGFDAQDTIVKL 430

Query: 457 QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
            E    A G AVG+D+++ E L PT AGIYDN  VK+QIINS  I
Sbjct: 431 LEE-RSALGEAVGLDISTDEALKPTDAGIYDNYNVKKQIINSCTI 474

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785339|gb|EFZ12013.1| hypothetical protein SINV_03070 [Solenopsis invicta]

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/345 (55%), Positives = 228/345 (66%), Gaps = 50/345 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L++G+V +HG+RHPDMPK ++NA+IL CN+S+EYEKS          +  G   +     
Sbjct: 206 LIRGIVTDHGSRHPDMPKRLENAYILICNVSLEYEKSE---------VNSGFFYKSAEER 256

Query: 227 ASLIARASTAMDDMTG----------DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD 276
             L+A     +D+             DGT  + +VI +                      
Sbjct: 257 EKLVAAERVFIDNRVKKIIELKKKLCDGTDKSFVVINQ---------------------- 294

Query: 277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY 336
                    GIDP SLD+FA+E IIALRRAKRRNMERL+LACGG AMNSV+ L+  HLG+
Sbjct: 295 --------KGIDPSSLDMFAKENIIALRRAKRRNMERLALACGGVAMNSVDDLKEEHLGW 346

Query: 337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGA 396
           AG V+EHVLGE K+TF+EECK P SVTILLKGPNK TL Q KDAVRDGLRAIKN IDD A
Sbjct: 347 AGLVYEHVLGETKYTFIEECKKPNSVTILLKGPNKFTLEQLKDAVRDGLRAIKNAIDDHA 406

Query: 397 VVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL 456
           VVPGAGAFEVA   ALQ YK  VKGK RLG+QAYAEALLIIPKT+A+NSGFD QDT+VKL
Sbjct: 407 VVPGAGAFEVATSQALQQYKEQVKGKQRLGVQAYAEALLIIPKTLAINSGFDPQDTIVKL 466

Query: 457 QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
            E    A G  VG+D+++GE L P  AGIYDN  VK+QIINS  I
Sbjct: 467 FEE-STALGEPVGLDLSTGEALKPADAGIYDNYNVKKQIINSCTI 510

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180413|gb|EFN68439.1| T-complex protein 1 subunit zeta [Camponotus floridanus]

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/345 (55%), Positives = 229/345 (66%), Gaps = 50/345 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L++G+V +HGARHPDMPK V+NA+ILTCN+S+EYEKS          +  G   +     
Sbjct: 206 LIRGIVTDHGARHPDMPKRVENAYILTCNVSLEYEKSE---------VNSGFFYKSAEER 256

Query: 227 ASLIARASTAMDDMTG----------DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD 276
             L+A     +D+             DGT  + +VI +                      
Sbjct: 257 EKLVAAERVFIDNRVKKIIELKKKLCDGTDKSFVVINQ---------------------- 294

Query: 277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY 336
                    GIDPQSLD+ A+E I+ALRRAKRRNMERL+LACGG AMNSV+ L+  HLG+
Sbjct: 295 --------KGIDPQSLDMLAKENIVALRRAKRRNMERLALACGGVAMNSVDDLKEEHLGW 346

Query: 337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGA 396
           AG V+EHVLGE K+TF+EECK P SVTILLKGPNK T+ Q KDAVRDGLRAIKN IDD A
Sbjct: 347 AGLVYEHVLGENKYTFIEECKKPNSVTILLKGPNKFTVEQLKDAVRDGLRAIKNAIDDAA 406

Query: 397 VVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL 456
           +VPG GAFEVAA  ALQ YK  VKGK RLG+QAYAEALL+IPK +AVNSGFD+QDT+VKL
Sbjct: 407 IVPGGGAFEVAASQALQRYKEQVKGKQRLGVQAYAEALLVIPKILAVNSGFDSQDTIVKL 466

Query: 457 QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII 501
            E    A   AVG+D+++GE + P  AGIYDN  VK+QIINS  I
Sbjct: 467 LEES-TALEEAVGLDLSTGEAIKPADAGIYDNYNVKKQIINSCTI 510

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628300|gb|EHJ77689.1| chaperonin subunit 6a zeta [Danaus plexippus]

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/336 (56%), Positives = 235/336 (69%), Gaps = 36/336 (10%)

Query: 166 ILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKS---SQGGHQPEISLAKGIANQI 222
           IL+KG+V++HGARHPDMPK V+NA+ILTCN+S+EYEK+   S   ++      K IA + 
Sbjct: 205 ILIKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLIAAER 264

Query: 223 QHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDR 282
           +     +  +   A+     DGT  + +VI +                            
Sbjct: 265 EFIDQRV--KKIVALKKKLCDGTKKSFVVINQ---------------------------- 294

Query: 283 YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
              GIDP SLD+ A+EGIIALRRAKRRNMERL+LACGG AMNSV+ L    LGYAG V+E
Sbjct: 295 --KGIDPLSLDVLAKEGIIALRRAKRRNMERLALACGGIAMNSVDDLSEECLGYAGLVYE 352

Query: 343 HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
           H+LGEEK+TFVEECKNPQSVTIL+KGPNKHTLAQ KDAVRDGLRAI N I+D  +VPGA 
Sbjct: 353 HILGEEKYTFVEECKNPQSVTILIKGPNKHTLAQIKDAVRDGLRAINNAIEDKCLVPGAA 412

Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
           AFEV A + L  +K+TVKGK RLGIQAYAEALL+IPKT+AVNSG+DAQDT+VKLQE    
Sbjct: 413 AFEVKANNELLKFKDTVKGKLRLGIQAYAEALLVIPKTLAVNSGYDAQDTIVKLQEESRL 472

Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            P + +G+D+++GE + P   GIYDN  VK+QI+NS
Sbjct: 473 NPDL-IGLDLSTGEAIKPIDLGIYDNYIVKKQILNS 507

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
FB|FBgn0027329	533	Tcp-1zeta "T-cp1zeta" [Drosoph	0.337	0.397	0.680	1.3e-94
UNIPROTKB|Q3MHL7	531	CCT6A "T-complex protein 1 sub	0.387	0.459	0.581	1.9e-91
UNIPROTKB|F1RIU3	531	CCT6A "Uncharacterized protein	0.387	0.459	0.573	6.2e-91
UNIPROTKB|I3L9J4	364	LOC100520609 "Uncharacterized	0.387	0.670	0.573	6.2e-91
UNIPROTKB|Q3MHS9	531	Cct6a "Chaperonin subunit 6a (	0.387	0.459	0.569	8e-91
UNIPROTKB|F1NWH9	532	CCT6A "Uncharacterized protein	0.387	0.458	0.569	1e-90
UNIPROTKB|Q5ZJ54	530	CCT6 "T-complex protein 1 subu	0.387	0.460	0.569	1e-90
ZFIN|ZDB-GENE-011018-2	531	cct6a "chaperonin containing T	0.373	0.442	0.599	1.7e-90
UNIPROTKB|O77622	531	CCT6 "T-complex protein 1 subu	0.387	0.459	0.565	2.7e-90
MGI|MGI:107943	531	Cct6a "chaperonin containing T	0.387	0.459	0.565	2.7e-90

FB|FBgn0027329 Tcp-1zeta "T-cp1zeta" [Drosophila melanogaster (taxid:7227)]

 Score = 753 (270.1 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
 Identities = 145/213 (68%), Positives = 177/213 (83%)

Query:   286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
             GIDP SLD  A+EGI+ALRRAKRRNMERLSLACGGTAMNS + L+  HLGYAG V+EHVL
Sbjct:   298 GIDPISLDALAKEGILALRRAKRRNMERLSLACGGTAMNSFDDLQEEHLGYAGVVYEHVL 357

Query:   346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFE 405
             GE K+TFVE+CKNP SVTIL+KGPNKHT+ Q KDA+RDGLRAI NTI D A+VPGAGAFE
Sbjct:   358 GENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDAIRDGLRAINNTIADKALVPGAGAFE 417

Query:   406 VAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG 465
             V A++ L  +K+T+KGKSRL +QA+A+ALL+IPKT+AVNSG+DAQDT+VKL      +P 
Sbjct:   418 VRAYNELVAFKDTIKGKSRLAVQAFADALLVIPKTLAVNSGYDAQDTIVKLTVEDRLSPE 477

Query:   466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             + VG+D+ +GE + P   G+YDN  VK+QI+NS
Sbjct:   478 L-VGLDLATGEPMKPVDLGVYDNYIVKKQILNS 509

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0005832 "chaperonin-containing T-complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0007099 "centriole replication" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

UNIPROTKB|Q3MHL7 CCT6A "T-complex protein 1 subunit zeta" [Bos taurus (taxid:9913)]

 Score = 724 (259.9 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
 Identities = 146/251 (58%), Positives = 190/251 (75%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGIIALRRAKRRNMERL+LACGG A+NS++ L P
Sbjct:   282 CGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNP 341

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN 
Sbjct:   342 DCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNA 401

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             IDDG VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+
Sbjct:   402 IDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQE 461

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G  VGVD+N+GE +    AGI+DN  VK+Q+++S  +   +  ++ E
Sbjct:   462 TLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDE 520

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   521 -IMRAGMSSLK 530

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1RIU3 CCT6A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 719 (258.2 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 144/251 (57%), Positives = 189/251 (75%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG A+NS++ L P
Sbjct:   282 CGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVALNSLDDLNP 341

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN 
Sbjct:   342 DCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNA 401

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             IDDG VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+
Sbjct:   402 IDDGCVVPGAGAVEVAMAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQE 461

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G  VGVD+N+GE +     GI+DN  VK+Q+++S  +   +  ++ E
Sbjct:   462 TLVKVQAEHSES-GQLVGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDE 520

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   521 -IMRAGMSSLK 530

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|I3L9J4 LOC100520609 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 719 (258.2 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 144/251 (57%), Positives = 189/251 (75%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG A+NS++ L P
Sbjct:   115 CGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVALNSLDDLNP 174

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN 
Sbjct:   175 DCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNA 234

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             IDDG VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+
Sbjct:   235 IDDGCVVPGAGAVEVAMAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQE 294

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G  VGVD+N+GE +     GI+DN  VK+Q+++S  +   +  ++ E
Sbjct:   295 TLVKVQAEHSES-GQLVGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDE 353

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   354 -IMRAGMSSLK 363

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q3MHS9 Cct6a "Chaperonin subunit 6a (Zeta)" [Rattus norvegicus (taxid:10116)]

 Score = 713 (256.0 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 143/251 (56%), Positives = 188/251 (74%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG A+NS + L P
Sbjct:   282 CGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGIALNSFDDLNP 341

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN 
Sbjct:   342 DCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNA 401

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             IDDG VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+
Sbjct:   402 IDDGCVVPGAGAVEVALAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQE 461

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G  VGVD+N+GE +     G++DN  VK+Q+++S  +   +  ++ E
Sbjct:   462 TLVKVQAEHSES-GQLVGVDLNTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDE 520

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   521 -IMRAGMSSLK 530

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1NWH9 CCT6A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 717 (257.5 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 143/251 (56%), Positives = 191/251 (76%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGGTAMNSVE L P
Sbjct:   283 CGDSDKGFIVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTP 342

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEK+TF+E+C NP+SVT+L++GPNKHTL Q KDAVRDGLRA+KN 
Sbjct:   343 DCLGHAGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNA 402

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             I+DG V+PGAGA EVA  +AL  +K  VKG+++LG+QA+A+ALLIIPK +A NSG+D Q+
Sbjct:   403 IEDGCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQE 462

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G   GVD+N+GE +   +AGI+DN  VK+Q+++S  +   +  ++ E
Sbjct:   463 TLVKVQAEHAES-GQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDE 521

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   522 -IMRAGMSSLK 531

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZJ54 CCT6 "T-complex protein 1 subunit zeta" [Gallus gallus (taxid:9031)]

 Score = 717 (257.5 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 143/251 (56%), Positives = 191/251 (76%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGGTAMNSVE L P
Sbjct:   281 CGDSDKGFIVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTP 340

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEK+TF+E+C NP+SVT+L++GPNKHTL Q KDAVRDGLRA+KN 
Sbjct:   341 DCLGHAGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNA 400

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             I+DG V+PGAGA EVA  +AL  +K  VKG+++LG+QA+A+ALLIIPK +A NSG+D Q+
Sbjct:   401 IEDGCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQE 460

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G   GVD+N+GE +   +AGI+DN  VK+Q+++S  +   +  ++ E
Sbjct:   461 TLVKVQAEHAES-GQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDE 519

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   520 -IMRAGMSSLK 529

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-011018-2 cct6a "chaperonin containing TCP1, subunit 6A (zeta 1)" [Danio rerio (taxid:7955)]

 Score = 715 (256.8 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
 Identities = 142/237 (59%), Positives = 185/237 (78%)

Query:   286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
             GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG AMNSVE L P  LG+AG V+E+ L
Sbjct:   296 GIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVAMNSVEDLTPECLGHAGLVYEYTL 355

Query:   346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFE 405
             GEEKFTF+E C NP+SVT+L+KGPNKHTL Q KDAVRDGLRA+KN I+DG+VV GAGAFE
Sbjct:   356 GEEKFTFIENCSNPRSVTLLVKGPNKHTLTQIKDAVRDGLRAVKNAIEDGSVVAGAGAFE 415

Query:   406 VAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG 465
             VA   AL  +K  VKG+++LG+QA+A+ALL+IPK +A NSG+D Q+TLVKLQ    EA G
Sbjct:   416 VAVADALVKHKPKVKGRAQLGVQAFADALLVIPKVLAQNSGYDPQETLVKLQSEFKEA-G 474

Query:   466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALE 522
               VGVD+++GE +    AG++DN +VK+Q+++S  +   +  ++ E   +A + +L+
Sbjct:   475 QLVGVDLSTGEPMVAGEAGVWDNYSVKKQLLHSCTVIASNILLVDE-IMRAGMSSLK 530

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O77622 CCT6 "T-complex protein 1 subunit zeta" [Oryctolagus cuniculus (taxid:9986)]

 Score = 713 (256.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
 Identities = 142/251 (56%), Positives = 189/251 (75%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG  +NS++ L P
Sbjct:   282 CGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVPLNSLDDLNP 341

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN 
Sbjct:   342 DCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNA 401

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             IDDG VVPGAGA EVA   AL  YK++VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+
Sbjct:   402 IDDGCVVPGAGAVEVAMAEALIKYKSSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQE 461

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK++    E+ G  VGVD+N+GE +     GI+DN  VK+Q+++S  +   +  ++ E
Sbjct:   462 TLVKIRTEHSES-GQLVGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDE 520

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   521 -IMRAGMSSLK 530

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

MGI|MGI:107943 Cct6a "chaperonin containing Tcp1, subunit 6a (zeta)" [Mus musculus (taxid:10090)]

 Score = 708 (254.3 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
 Identities = 142/251 (56%), Positives = 188/251 (74%)

Query:   277 CSTSDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP 331
             C  SD+      + GIDP SLD  A+EGI+ALRRAKRRNMERL+LACGG A+NS + L P
Sbjct:   282 CGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGIALNSFDDLNP 341

Query:   332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNT 391
               LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN 
Sbjct:   342 DCLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNA 401

Query:   392 IDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQD 451
             IDDG VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+
Sbjct:   402 IDDGCVVPGAGAVEVALAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQE 461

Query:   452 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
             TLVK+Q    E+ G  VGVD+++GE +     G++DN  VK+Q+++S  +   +  ++ E
Sbjct:   462 TLVKVQAEHSES-GQLVGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDE 520

Query:   512 GFTQARLKALE 522
                +A + +L+
Sbjct:   521 -IMRAGMSSLK 530

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0002199 "zona pellucida receptor complex" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IDA

GO:0005874 "microtubule" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=IDA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0097223 "sperm part" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O77622	TCPZ_RABIT	No assigned EC number	0.5014	0.4880	0.5781	yes	N/A
Q3MHL7	TCPZ_BOVIN	No assigned EC number	0.5014	0.5039	0.5969	yes	N/A
P80317	TCPZ_MOUSE	No assigned EC number	0.5043	0.4880	0.5781	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	629
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	1e-130
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	1e-118
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	3e-82
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	1e-79
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	3e-61
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	1e-56
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	7e-52
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	2e-40
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	7e-40
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	3e-37
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	2e-36
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	2e-34
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	1e-33
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	2e-29
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	6e-29
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	8e-29
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	1e-27
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	5e-27
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	3e-25
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	3e-25
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	1e-24
TIGR02343	532	TIGR02343, chap_CCT_epsi, T-complex protein 1, eps	5e-23
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	1e-22
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	3e-20
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	1e-19
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	3e-19
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	2e-17
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	4e-17
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	1e-16
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	6e-16
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	8e-16
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	3e-15
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	3e-14
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	4e-14
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	3e-13
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	9e-13
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	2e-12
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	1e-11
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	3e-11
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	2e-09
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	2e-09
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	2e-09
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	4e-08
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	5e-08
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	5e-08
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	1e-07
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	2e-07
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	2e-07
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	4e-07
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	4e-07
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	4e-07
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	6e-07
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	6e-07
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	6e-07
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	6e-07
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	1e-06
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	2e-06
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	2e-06
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	3e-06
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	3e-06
PTZ00114	555	PTZ00114, PTZ00114, Heat shock protein 60; Provisi	7e-06
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	8e-06
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	1e-05
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	3e-05
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	5e-05
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	1e-04
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	1e-04
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	1e-04
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	2e-04
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	2e-04
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	2e-04
TIGR02343	532	TIGR02343, chap_CCT_epsi, T-complex protein 1, eps	2e-04
PRK14104	546	PRK14104, PRK14104, chaperonin GroEL; Provisional	2e-04
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	3e-04
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	4e-04
TIGR02348	524	TIGR02348, GroEL, chaperonin GroL	4e-04
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	6e-04
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	7e-04
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	8e-04
cd03334	261	cd03334, Fab1_TCP, TCP-1 like domain of the eukary	8e-04
PRK12851	541	PRK12851, groEL, chaperonin GroEL; Reviewed	8e-04
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	9e-04
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	0.001
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	0.001
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	0.001
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	0.001
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	0.001
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	0.002
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	0.002
TIGR02343	532	TIGR02343, chap_CCT_epsi, T-complex protein 1, eps	0.002
cd03344	520	cd03344, GroEL, GroEL_like type I chaperonin	0.002
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	0.003
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	0.003
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	0.003
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	0.004
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	0.004

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score =  391 bits (1007), Expect = e-130
 Identities = 179/344 (52%), Positives = 227/344 (65%), Gaps = 39/344 (11%)

Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS     L++G+VL+HGARHPDMP+ VKNA+ILTCN+S+EYEK+                
Sbjct: 199 KSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKT---------------- 242

Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ-----ADIYIAEVNLKMHKFA 274
            ++        A     +           V  I EL K+      D     +N K     
Sbjct: 243 -EVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQK----- 296

Query: 275 PDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
                      GIDP SLDL A+EGI+ALRRAKRRNMERL+LACGG A+NSVE L P  L
Sbjct: 297 -----------GIDPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECL 345

Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           G+AG V+E  +GEEK+TF+EE KNP+S TIL+KGPN HT+AQ KDAVRDGLRA+KN I+D
Sbjct: 346 GWAGLVYETTIGEEKYTFIEEVKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIED 405

Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
             VVPGAGAFE+AA+  L+  K +VKGK++LG++A+A ALL+IPKT+A NSGFDAQDTLV
Sbjct: 406 KCVVPGAGAFEIAAYRHLKENKKSVKGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLV 465

Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
           KL++   E   V VGVD+N+GE ++P   GI+DN  VK+Q+I S
Sbjct: 466 KLEDEHDEGGEV-VGVDLNTGEPIDPEIKGIWDNYRVKKQLIQS 508

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score =  361 bits (929), Expect = e-118
 Identities = 138/213 (64%), Positives = 174/213 (81%), Gaps = 1/213 (0%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           GIDP SLD+ A+EGI+ALRRAKRRNMERL+LACGG AMNSV+ L P  LGYAG V+E  L
Sbjct: 254 GIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTL 313

Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFE 405
           GEEK+TF+E  KNP+S TIL+KGPN HT+ Q KDA+RDGLRA+KN I+D  VVPGAGAFE
Sbjct: 314 GEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFE 373

Query: 406 VAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG 465
           VA +  L+ +K +VKGK++LG+QA+A+ALL+IPKT+A NSG D Q+TLVKLQ+   E  G
Sbjct: 374 VALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEG-G 432

Query: 466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
              GVD+++GE ++P S GI+DN +VKRQI++S
Sbjct: 433 QVGGVDLDTGEPMDPESEGIWDNYSVKRQILHS 465

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score =  266 bits (683), Expect = 3e-82
 Identities = 113/335 (33%), Positives = 173/335 (51%), Gaps = 49/335 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L++G+VL+ G   PDMPK ++N  IL  +  +EYEK+ +          + +    +   
Sbjct: 174 LIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKT-EKVIISTAEELERLLEAEE--- 229

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD---IYIAEVNLKMHKFAPDCSTSDRY 283
                     +  +             E +  A    + I +                  
Sbjct: 230 --------KQLLPLL------------EKIVDAGVNLVIIQK------------------ 251

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
             GID  +L   A+ GI+ALRR K+ ++ERL+ A G T ++S++ LEP  LG AG V E 
Sbjct: 252 --GIDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEER 309

Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +GE+K TF+E C + +  TILL+G   H L + + A+ D L A+K  + D  VVPG GA
Sbjct: 310 EIGEDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGA 369

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+    AL+ Y  +V GK +LGI+A+AEAL +IP+T+A N+G D  + L KL+ A  + 
Sbjct: 370 AELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKG 429

Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
               +G+D ++GE+ +   AGI D L VKR  + S
Sbjct: 430 NN--LGIDADTGEIGDMKEAGIIDPLKVKRSALKS 462

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score =  258 bits (663), Expect = 1e-79
 Identities = 87/213 (40%), Positives = 136/213 (63%), Gaps = 1/213 (0%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           GID ++L   A+ GI+A+RR ++ ++ER++ A G T ++ +E L P  LG AG V E  +
Sbjct: 237 GIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKI 296

Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFE 405
           G+EK+TF+E CK  +  TILL+G  +  L + + ++ D L A++  ++DG +VPG GA E
Sbjct: 297 GDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAE 356

Query: 406 VAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG 465
           +    AL+    T+ GK +LGI+A+A+AL +IP+T+A N+G D  + + KL+    E  G
Sbjct: 357 IELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEG-G 415

Query: 466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
              G DV +GE+++   AGI D L VKRQ + S
Sbjct: 416 GNAGGDVETGEIVDMKEAGIIDPLKVKRQALKS 448

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score =  211 bits (540), Expect = 3e-61
 Identities = 109/334 (32%), Positives = 176/334 (52%), Gaps = 43/334 (12%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGI--ANQIQH 224
           L++G+V++    HP MPK V+NA I   +  +E +K        EI     I   +Q+Q 
Sbjct: 207 LIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKK-------TEIDAKIRITSPDQLQ- 258

Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
              + + +    + +M  D    T          A++   +                   
Sbjct: 259 ---AFLEQEEAMLKEMV-DKIADT---------GANVVFCQ------------------- 286

Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHV 344
            GID  +    A+ GI+A+RR K+ +ME+L+ A G   + +++ L P  LG A  V E  
Sbjct: 287 KGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERK 346

Query: 345 LGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
           +G++K  FVE CKNP++VTILL+G  +H + + + A+ D LR + + ++DG VV G GA 
Sbjct: 347 VGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAV 406

Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
           E+     L+ Y  +V G+ +L ++A+A+AL  IP+T+A N+G D  DTLV+L+ A  E  
Sbjct: 407 EIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAA-HEKG 465

Query: 465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
               G+DV +GEV++    G+ + L VK+Q I S
Sbjct: 466 NKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKS 499

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score =  199 bits (507), Expect = 1e-56
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 45/335 (13%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV+G+V++    HP MPK V+NA I   +  +E EK        EI     I        
Sbjct: 210 LVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEK-------TEIDAEIRI-------- 254

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD---CSTSDRY 283
                               +    I + L Q +  + E+  K+     +   C      
Sbjct: 255 --------------------TDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQK---- 290

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
             GID  +    A+ GI+A+RR K+ ++E+L+ A G   ++S++ +  + LGYAG V E 
Sbjct: 291 --GIDDVAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEER 348

Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +GE+K  FVE CKNP++VTILL+G  +H + + + +++D L  + + ++DG VV G GA
Sbjct: 349 KVGEDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGA 408

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     L++Y   + G+ +L I+A+A+AL  IP+ +A N+G D  D LV+L+ A  E 
Sbjct: 409 VEIEIALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELR-AKHEK 467

Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +GE+ +    G+ + L VK Q I S
Sbjct: 468 GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKS 502

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score =  186 bits (475), Expect = 7e-52
 Identities = 90/341 (26%), Positives = 148/341 (43%), Gaps = 48/341 (14%)

Query: 167 LVKGVVLNHG-ARHPDMP-KSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQH 224
           +V+G+V + G      MP K ++N  IL  +  +E +       +PE+ L       I  
Sbjct: 195 VVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIK-------KPELPLEI----VISS 243

Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
               LI       +D  G+   + V      + +    +  V                  
Sbjct: 244 GKPLLIIA-----EDEEGEALATLV----VNILRGGANVVVVKAP--------------- 279

Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNM-ERLSLACGGTAMNSVEGLEPAHLGY--AGSVF 341
            GID  +        I+  RR K+ ++ ERL+   G   ++ ++ L    LG   AG V 
Sbjct: 280 -GIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVE 338

Query: 342 EHVLGEEKFTFVEECKN--PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
           E   G+     ++E K       TIL++G  +  L + +  + D L  ++  +++G +VP
Sbjct: 339 ETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVP 398

Query: 400 GAGAFEVAAWHALQNYKNTVKG-KSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE 458
           G GA E+ A   L+ Y  TV+G   +LGI+A+A AL   P+ +A N+G D  + L KL+ 
Sbjct: 399 GGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRS 458

Query: 459 ACGEAPGVAVGVDVNSGEVLNPT-SAGIYDNLTVKRQIINS 498
           A         G+D  +GE  +    AGI D L VKR  + +
Sbjct: 459 AHATT---NYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN 496

Length = 524

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score =  154 bits (391), Expect = 2e-40
 Identities = 88/341 (25%), Positives = 163/341 (47%), Gaps = 41/341 (12%)

Query: 161 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIAN 220
            D C++  KGV++N    HP M + ++N  I+  +  +EY+K   G  Q  + + K    
Sbjct: 206 EDSCVL--KGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKK---GESQTNVEIMKE--- 257

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTS 280
                            +D               +L+  + Y+  +   +    PD   +
Sbjct: 258 -----------------EDWN------------RILQMEEEYVQLMCEDIIAVKPDLVIT 288

Query: 281 DRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV 340
           ++   G+   +     +  I A+RR ++ +  R++ ACG T +N  E L  + +G    +
Sbjct: 289 EK---GVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGL 345

Query: 341 FE-HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
           FE   +G+E FTF  ECK+P++ TILL+G +K  L + +  ++D +   +N + +  ++P
Sbjct: 346 FEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLP 405

Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
           G GA E+A    L    + ++G  +   +A A+AL IIP+T+A N G +   TL +L+  
Sbjct: 406 GGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAK 465

Query: 460 CGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWI 500
             +      G+D  +G++++    GI++ L VK Q   + I
Sbjct: 466 HAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAI 506

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score =  152 bits (385), Expect = 7e-40
 Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 1/216 (0%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           G+   +     + GI ALRR ++ +  R++ ACG T +N  E L  + +G    +FE   
Sbjct: 250 GVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKK 309

Query: 346 -GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
            G+E FTF+ ECK+P++ TILL+G +K  L + +  ++D +   +N I +  +VPG GA 
Sbjct: 310 IGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGAT 369

Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
           E+A  HAL     +++G  +   +A A AL +IP+T+A N G +   TL +L+    +  
Sbjct: 370 EMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGE 429

Query: 465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWI 500
               G+D  +G++++    GI+D L VK Q   + I
Sbjct: 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAI 465

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score =  137 bits (348), Expect = 3e-37
 Identities = 44/109 (40%), Positives = 70/109 (64%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           GID  +L   A+ GI+A+RR K+ ++ER++ A G T ++S+E L P  LG A  V E  +
Sbjct: 101 GIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKI 160

Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
           GEEK TF+E CK  ++ TILL+G  +  L + K ++ D L A++  +++
Sbjct: 161 GEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score =  143 bits (362), Expect = 2e-36
 Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 13/220 (5%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTA------MNSVEGLEPAHLGYAGS 339
           GID   L  F   G +A+RR K+ ++ R++ A G T       +   E  +P++LG A  
Sbjct: 283 GIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEE 342

Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
           V +  +G+++   ++  K   S +I+L+G N   L + + ++ D L  +K T++  +VVP
Sbjct: 343 VVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVP 402

Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL--- 456
           G GA E A    L+N+  T+  + +L I  +AEALL+IPKT+AVN+  DA + + KL   
Sbjct: 403 GGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAY 462

Query: 457 ----QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVK 492
               Q    +      G+D+ +G+V +   AG+ +    K
Sbjct: 463 HAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSK 502

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score =  137 bits (346), Expect = 2e-34
 Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 8/208 (3%)

Query: 295 FAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE 354
           FA   I    R    +++R++ A GG+   +V  +    LG  G   E  +G E++    
Sbjct: 299 FADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFT 358

Query: 355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGL----RAIKNTIDDGAVVPGAGAFEVAAWH 410
            C   ++ TI+L+G  +  + + + ++ D +    RAIKN     +VV G GA E+    
Sbjct: 359 GCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKN----DSVVAGGGAIEMELSK 414

Query: 411 ALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGV 470
            L++Y  T+ GK +L I A+A+AL IIP+ +  N+GFDA D L KL++   +  G   GV
Sbjct: 415 YLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGV 474

Query: 471 DVNSGEVLNPTSAGIYDNLTVKRQIINS 498
           D+N+  + +   A +++   VK   + +
Sbjct: 475 DINNEGIADNFEAFVWEPSLVKINALTA 502

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score =  134 bits (340), Expect = 1e-33
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 13/224 (5%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV------EGLEPAHLGYAGS 339
           GID   L  F   G + +RR K+ +++R++ A GGT ++++      E  + ++LG+A  
Sbjct: 287 GIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADE 346

Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
           V +  + +++   ++  K   S +I+L+G N   L + + ++ D L  +K T++  +VVP
Sbjct: 347 VVQERIADDECILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVP 406

Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
           G GA E A    L+N+  T+  + +L I  +AEALLIIPKT+AVN+  D+ + + KL+  
Sbjct: 407 GGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAKLRAY 466

Query: 460 CGEAPGVA-------VGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
              A            G+D+++G++ +   AG+ +    K + +
Sbjct: 467 HAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSL 510

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score =  122 bits (308), Expect = 2e-29
 Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 1/204 (0%)

Query: 295 FAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE 354
           FA   I    R    +M+R+  ACGG+  ++   LE   LG      E  +G E++    
Sbjct: 301 FADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLFT 360

Query: 355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN 414
            C + ++ TI+L+G  +  + + + ++ D +  ++  + +  +V G GA E+     L++
Sbjct: 361 GCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRD 420

Query: 415 YKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNS 474
           Y  T+ GK +L I A+A+AL +IP+ +  N+GFD+ + L KL+ A     G   GVD+N+
Sbjct: 421 YSKTIDGKQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSA-HAKGGKWYGVDINT 479

Query: 475 GEVLNPTSAGIYDNLTVKRQIINS 498
            ++ +     +++   VK   + +
Sbjct: 480 EDIGDNFENFVWEPALVKINALKA 503

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score =  120 bits (304), Expect = 6e-29
 Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
           LFA  GI+A+  A    MERL+ A G   +++ +  E   LG+   + E ++GE+K    
Sbjct: 305 LFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRF 364

Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
             C   ++ TI+L+G + H L + + ++ D L  +  T+ D  VV G G  E+   +A++
Sbjct: 365 SGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVE 424

Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA--CGEAPGVAVGVD 471
                V+GK  L I+A+A+AL  IP  IA N G+D+ + + KL+     G       G+D
Sbjct: 425 ELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGN---KTAGID 481

Query: 472 VNSGEVLNPTSAGIYDNLTVKRQIINS 498
           +  G V +    GI ++  VK   + S
Sbjct: 482 MEKGTVGDMKELGITESYKVKLSQLCS 508

Length = 533

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score =  119 bits (301), Expect = 8e-29
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 4/204 (1%)

Query: 297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEEC 356
           + GI+ ++   +  + RL    G T +  +    P  +GY  SV+   +G+ K     + 
Sbjct: 251 KYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310

Query: 357 KNPQSV-TILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY 415
           K    + TI+L+G  ++ L   + A+ DG+   K+   DG  VPGAGA E+     L+ Y
Sbjct: 311 KEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEY 370

Query: 416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG 475
                G  +  I+ +AEA  ++P+T+A N+G DA + L +L  A  +    + GVD+ SG
Sbjct: 371 GEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKG-NKSAGVDIESG 429

Query: 476 E--VLNPTSAGIYDNLTVKRQIIN 497
           +    +   AGI+D+L  K+  I 
Sbjct: 430 DEGTKDAKEAGIFDHLATKKWAIK 453

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score =  116 bits (293), Expect = 1e-27
 Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 1/205 (0%)

Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
           LFA  GI+A+  A    +ERL+L  GG   ++ +  E   LG    + E ++GE+K    
Sbjct: 293 LFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRF 352

Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
                 ++ TI+L+G ++  L + + ++ D L  +  T+ D  VV G G  E+    A++
Sbjct: 353 SGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVE 412

Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
                  GK  L I+A+A+AL  +P  IA N+G+D+ + + +L+ A       A G+D+ 
Sbjct: 413 ELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTA-GLDMR 471

Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
            G V +    GI ++  VKRQ++ S
Sbjct: 472 KGTVGDMKELGITESFKVKRQVLLS 496

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score =  115 bits (289), Expect = 5e-27
 Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 2/213 (0%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           G D ++  L  + G+ A+R      +E +++A GG  +   E L P  LG AG V E   
Sbjct: 296 GFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISF 355

Query: 346 G--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
           G  ++K   +E C N ++VTI ++G NK  + + K ++ D L  ++N I D  +V G GA
Sbjct: 356 GTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGA 415

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E++   A++   +   G  +  ++A+A+AL  IP  +A NSG +  +TL +++    + 
Sbjct: 416 AEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE 475

Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
               +G+D       +     +++ L  K+Q I
Sbjct: 476 KNPHLGIDCLGRGTNDMKEQKVFETLISKKQQI 508

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score =  109 bits (274), Expect = 3e-25
 Identities = 36/53 (67%), Positives = 49/53 (92%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
           MVE+M+M+HK+  D+ L++G+VLDHGARHPDMPK V+NA+ILTCN+S+EYEK+
Sbjct: 186 MVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKT 238

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score =  109 bits (274), Expect = 3e-25
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
           LFA  GI+++  A    +ERL+L  GG  +++ +  E   LG    + E ++GE+K    
Sbjct: 293 LFADAGIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKF 352

Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
              K  ++ TI+L+G  +  L + + ++ D L  +  T+ +   V G G  E+    A+ 
Sbjct: 353 SGVKAGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVD 412

Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
                + GK  L ++A+A AL  +P  +A N+GFD+ + + +L+ A         G+D+N
Sbjct: 413 TEAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYNGNSTM-GLDMN 471

Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
            G + +    GI ++  +KR +++S
Sbjct: 472 EGTIADMRQLGIVESYKLKRAVVSS 496

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score =  107 bits (269), Expect = 1e-24
 Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 4/204 (1%)

Query: 297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFT-FVEE 355
           R GI+ L+   +  + RL    G T +  +    P  LGY  SV+   +G +K T F +E
Sbjct: 299 RYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQE 358

Query: 356 CKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY 415
             + +  TI+L+G  K+ L   + A+ DG+  +K  + DG  +PGAGA E+     L  Y
Sbjct: 359 NGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKY 418

Query: 416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG 475
                G  +  I+ +AEA  IIP+T+A N+G +  + + KL  A  +    + G+D+ + 
Sbjct: 419 AEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKG-NTSKGIDIEAE 477

Query: 476 --EVLNPTSAGIYDNLTVKRQIIN 497
              V + + AGIYD L  K+  I 
Sbjct: 478 SDGVKDASEAGIYDMLATKKFAIK 501

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit

 Score =  102 bits (257), Expect = 5e-23
 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           G D ++  L  +  + A+R    + +E +++A GG  +   + L    LG AG V E   
Sbjct: 300 GFDDEANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISF 359

Query: 346 G--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
           G  +++   +E+CKN ++VTI ++G NK  + + K ++ D L  ++N I D  +V G GA
Sbjct: 360 GTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGA 419

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E++   A+    +   G  +  I+A+A+AL  IP  +A NSG D   TL  L+    + 
Sbjct: 420 AEISCSLAVSQEADKYSGVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKE 479

Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
               +GVD       +     +++ L  K+Q I
Sbjct: 480 KNPNIGVDCLGYGTNDMKEQFVFETLIGKKQQI 512

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score =  101 bits (254), Expect = 1e-22
 Identities = 38/53 (71%), Positives = 49/53 (92%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
           MVE+MEMKHK+  D+ L++G+VLDHGARHPDMP+ VKNA+ILTCN+S+EYEK+
Sbjct: 190 MVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKT 242

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 94.2 bits (235), Expect = 3e-20
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
           QIQHPTAS+IARA+TA DD+TGDGTTS VL+IGELLKQA+ YI E
Sbjct: 62  QIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQE 106

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 6/199 (3%)

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           R  +   +L   A+  I+ ++  +R  +E +    G   + S++      LG A  V E 
Sbjct: 284 RDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEV 343

Query: 344 VLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
            LG+ K   +   KNP ++VTIL++G NK  L + + ++ D L  I+  +   A++PG G
Sbjct: 344 SLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGG 403

Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE--AC 460
           A E+     L  +  T+ G  +  ++A+A+AL +IP T+A N+G +    + +L+   A 
Sbjct: 404 APEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ 463

Query: 461 GEAPGVAVGVDVNSGEVLN 479
           GE      G++V  G + N
Sbjct: 464 GE---KNAGINVRKGAITN 479

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 6/199 (3%)

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           R  ++  +L   A+  I+ ++  +R  +E +    G   + S++      LG A  V E 
Sbjct: 285 RDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEV 344

Query: 344 VLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
                K   +   +N  ++VT++++G NK  + + + ++ D L  I+  +    ++ G G
Sbjct: 345 DSDGGKIIKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGG 404

Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE--AC 460
           A E+     L  Y  T+KG     ++A+A+AL +IP T+A N+G +    + +L+   A 
Sbjct: 405 APEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHAN 464

Query: 461 GEAPGVAVGVDVNSGEVLN 479
           GE      G+ V  G + N
Sbjct: 465 GEK---TAGISVRKGGITN 480

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 34/58 (58%), Positives = 45/58 (77%)

Query: 117 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLN 174
            KSD    L++G+VL+HGARHPDMPK V+NA+ILTCN+S+EYEK++V       VV+N
Sbjct: 194 HKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYSVVIN 251

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 84.4 bits (209), Expect = 4e-17
 Identities = 35/45 (77%), Positives = 42/45 (93%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
           QIQHPTAS+IARA+TA D++TGDGTTSTV++IGELLKQA+ YI E
Sbjct: 66  QIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILE 110

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 30/45 (66%), Positives = 39/45 (86%)

Query: 159 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKS 203
            KSD    L++G+VL+HGARHPDMPK V+NA+ILTCN+S+EYEK+
Sbjct: 194 HKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKT 238

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 9/64 (14%)

Query: 76  MQHQHG-------IREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKG 128
           MQ QH        IR  G+VL+HGARHPDMPK V+NA+ILTCN+S+EYEK++V       
Sbjct: 190 MQMQHKSDSDTKLIR--GLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYS 247

Query: 129 VVLN 132
           VV+N
Sbjct: 248 VVIN 251

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 80.2 bits (198), Expect = 8e-16
 Identities = 30/46 (65%), Positives = 40/46 (86%)

Query: 118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           KS     L++G+VL+HGARHPDMP+ VKNA+ILTCN+S+EYEK++V
Sbjct: 199 KSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEV 244

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTP--PSREILLDVARTSLRTKVERELA 555
            +I  G+HPR+ITEGF  A+ KAL+ LES K+       RE+LL VARTSLRTK+  +LA
Sbjct: 102 RYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLA 161

Query: 556 DLLAE 560
           D L E
Sbjct: 162 DQLTE 166

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 75.5 bits (186), Expect = 3e-14
 Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTPPS--REILLDVARTSLRTKVERELA 555
            +I+ G+HPR+ITEGF  AR + LE L+  K+ T     RE LL+VARTSLRTK+  +LA
Sbjct: 106 RYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEVDREFLLNVARTSLRTKLPIDLA 165

Query: 556 DLLAE 560
           D L E
Sbjct: 166 DQLTE 170

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 3/50 (6%)

Query: 75  DMQHQHGIREE---GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           +M+H+         G+VL+HGARHPDMP+ VKNA+ILTCN+S+EYEK++V
Sbjct: 195 EMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEV 244

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score = 68.6 bits (169), Expect = 3e-13
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 1  MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEY 50
          ++++ ++   +  DS LV GVV D G   P MPK ++NA IL  +  +EY
Sbjct: 45 VIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY 94

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 70.4 bits (173), Expect = 9e-13
 Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           NSG D Q+TLVKLQ+   E  G   GVD+++GE ++P S GI+DN +VKRQI++S
Sbjct: 412 NSGLDVQETLVKLQDEYAEG-GQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHS 465

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 69.0 bits (170), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEY 50
           ++ + + K  +  DS LV G+V D G   P MPK ++NA IL  +  +EY
Sbjct: 181 VIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY 230

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 66.7 bits (164), Expect = 1e-11
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           +++HP A L+   + + DD  GDGTT+ V++ GELLK+A+  +A     +H
Sbjct: 58  EVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAA---GIH 105

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            NSGFDAQDTLVKL++   E   V VGVD+N+GE ++P   GI+DN  VK+Q+I S
Sbjct: 454 ENSGFDAQDTLVKLEDEHDEGGEV-VGVDLNTGEPIDPEIKGIWDNYRVKKQLIQS 508

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 60.3 bits (147), Expect = 2e-09
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
           +IQHP A L+  A+ + D+  GDGTT+ V++ GELL++A+  I  
Sbjct: 39  EIQHPAAKLLVEAAKSQDEEVGDGTTTAVVLAGELLEEAEKLIEA 83

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
            + +++++  +  DS L++G+VLD G   PDMPK ++N  IL  +  +EYEK+
Sbjct: 158 NIGVIKIEGGSLEDSELIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKT 210

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 59.7 bits (146), Expect = 2e-09
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
           G+HP  I  G+ +A  KALE+L+ + +      RE LL VA TSL +K+     D L E
Sbjct: 103 GIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score = 53.6 bits (130), Expect = 4e-08
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVV 172
           LV GVV + G   P MPK ++NA IL  +  +EY      +++ +  +
Sbjct: 61  LVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------VVIAEKGI 102

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 55.3 bits (134), Expect = 5e-08
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADL 557
             I +G+HP  I  G+  A   AL+ LE L I      E LL+VARTSL +K+    ++L
Sbjct: 79  KLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDDEDLLNVARTSLNSKISSRESEL 138

Query: 558 LAE 560
           L +
Sbjct: 139 LGK 141

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score = 53.6 bits (130), Expect = 5e-08
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEY 200
           LV GVV + G   P MPK ++NA IL  +  +EY
Sbjct: 61  LVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY 94

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 54.0 bits (131), Expect = 1e-07
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGV 171
           LV G+V + G   P MPK ++NA IL  +  +EY      +I  KG+
Sbjct: 197 LVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----VVIAEKGI 238

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 53.6 bits (130), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEY 200
           LV G+V + G   P MPK ++NA IL  +  +EY
Sbjct: 197 LVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY 230

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
           +++HP A L+   +   DD  GDGTT+ V++ G LLK+A
Sbjct: 61  ELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEA 99

Length = 524

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L++G+VL+ G   PDMPK ++N  IL  +  +EYEK++ 
Sbjct: 174 LIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEK 212

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKI-TTPPSREILLDVARTSLRTKVERELADLLAE 560
            +HP VI EG+  A  KALE+L+ + I   P  ++ L  +A+TSL  K      D LA+
Sbjct: 110 NIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLAD 168

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 5/47 (10%)

Query: 3   ELMEMKHKTPG---DSCLVKGVVLDHGARHPDMPKSVKNAHI--LTC 44
           EL++++ K  G   D+ LVKG+V+D    HP MPK VK+A I  LTC
Sbjct: 198 ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC 244

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           N+G D  + L KL+ A  +   +  G+D ++GE+ +   AGI D L VKR  + S
Sbjct: 410 NAGLDPIEVLAKLKAAHKKGNNL--GIDADTGEIGDMKEAGIIDPLKVKRSALKS 462

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 52.0 bits (126), Expect = 6e-07
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           N+G D  + + KL+    E  G   G DV +GE+++   AGI D L VKRQ + S
Sbjct: 395 NAGLDPIEVVTKLRAKHAEG-GGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKS 448

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
           I+HP A ++   +   D+  GDGTT+ V++ GELL++A
Sbjct: 66  IEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKA 103

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 84  EEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVV 130
             GVV + G   P MPK ++NA IL  +  +EY      +++ +  +
Sbjct: 62  VVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------VVIAEKGI 102

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 50.9 bits (123), Expect = 1e-06
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 84  EEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGV 129
             G+V + G   P MPK ++NA IL  +  +EY      +I  KG+
Sbjct: 198 VVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----VVIAEKGI 238

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 84  EEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            EG+VL+ G   PDMPK ++N  IL  +  +EYEK++ 
Sbjct: 175 IEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEK 212

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLA 559
           G+HP +I+E F  A  +A+++L+ + I    S RE LL  A TSL +KV  + + LLA
Sbjct: 104 GIHPTIISESFQSAADEAIKILDEMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLA 161

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD 260
           I+HP A ++   +   D+  GDGTT+ V++ GELL++A+
Sbjct: 67  IEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAE 105

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 45/122 (36%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSD 281
           I HP A  +   + + D   GDGTTS V++ GE LK+A  +I +                
Sbjct: 67  IVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIED---------------- 110

Query: 282 RYRTGIDPQSLDLFAREGIIALRRAKRRNMERLS------------------LACGGTAM 323
               G+ PQ +       I   R+A +  +E++                     C  TA+
Sbjct: 111 ----GVHPQII-------IRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATAL 159

Query: 324 NS 325
           NS
Sbjct: 160 NS 161

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK-----NTVKGKSRLGIQAYAE 432
           KD + D L A +  +++G +VPG G   VA   A +        N +    R G++    
Sbjct: 405 KDRIEDALNATRAAVEEG-IVPGGG---VALLRASKLLDKLEEDNELTPDQRTGVKIVRN 460

Query: 433 ALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNL-TV 491
           AL +  K IA N+G +    + K+     E    + G D  +GE +N   AGI D    V
Sbjct: 461 ALRLPTKQIAENAGVEGAVVVEKIL----EKKDPSFGYDAQTGEYVNMFEAGIIDPTKVV 516

Query: 492 KRQIINSWIISGL 504
           +  ++++  ++ L
Sbjct: 517 RSALVDAASVASL 529

Length = 555

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 502 SGLHPRVITEGFTQARLKALEVLESLKIT-TPPSREILLDVARTSLRTKVERELA-DLLA 559
             +HP VI EG+ +A  KALE+++ +    +P  R++L  VA TSL +K   E+A D LA
Sbjct: 110 QDIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTSKASAEVAKDKLA 169

Query: 560 E 560
            
Sbjct: 170 N 170

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
           G+HP VI+E F  A  KA+E+L+S+ I    + RE L+  A TSL +KV  + + LLA 
Sbjct: 103 GIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           N+G D  DTLV+L+ A  E      G+DV +GEV++    G+ + L VK+Q I S
Sbjct: 446 NAGLDPIDTLVELRAA-HEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKS 499

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 14  DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
           D+ LV+G+V+D    HP MPK V+NA I   +  +E EK+
Sbjct: 207 DTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKT 246

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 14  DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
           D+ L++G+V+D    HP MPK V+NA I   +  +E +K+
Sbjct: 204 DTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKT 243

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           ++HP A ++   +   D   GDGTTS V++  ELLK+A+  +     K+H
Sbjct: 63  VEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRANELVKN---KVH 109

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
           I HP A  +   + + D   GDGTTS V++ GELLK+A  +I E
Sbjct: 69  IVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEE 112

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           N+GFDA D L KL++   +  G   GVD+N+  + +   A +++   VK   + +
Sbjct: 448 NAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTA 502

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 123 IILVKGVVLNHGARHPDMPKSVKNAHI--LTC 152
             LVKG+V++    HP MPK VK+A I  LTC
Sbjct: 213 TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC 244

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 165 IILVKGVVLNHGARHPDMPKSVKNAHI--LTC 194
             LVKG+V++    HP MPK VK+A I  LTC
Sbjct: 213 TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC 244

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 5/47 (10%)

Query: 3   ELMEMKHKTPG---DSCLVKGVVLDHGARHPDMPKSVKNAH--ILTC 44
           +L++++ K  G   D+ L+KG+++D    HP MPK VK+A   ILTC
Sbjct: 202 DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTC 248

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532

>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 364 ILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKS 423
           I + G  +  + + KD V D + A +  +++G +VPG G   + A   L+  K T     
Sbjct: 379 IRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQ 436

Query: 424 RLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSA 483
           + G++   +AL    + IA+N+G D    + K+ E        + G D  +GE  N  S 
Sbjct: 437 KTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEK----EQYSYGFDSQTGEYGNLVSK 492

Query: 484 GIYDNLTVKRQIINS 498
           GI D   V R  I +
Sbjct: 493 GIIDPTKVVRTAIQN 507

Length = 546

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPT-SAGIYDNLTVKRQIINS 628
           N+G D  + L KL+ A         G+D  +GE  +    AGI D L VKR  + +
Sbjct: 444 NAGLDPIEVLSKLRSAHATT---NYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN 496

Length = 524

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           ++HP A ++   +   D   GDGTTS V++  ELLK+A+  + +   K+H
Sbjct: 59  VEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQ---KIH 105

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEA 433
           + + K  + D L A +  +++G +VPG G   + A  AL+  K        +GI     A
Sbjct: 387 MKEKKLRIEDALNATRAAVEEG-IVPGGGVALLRAAAALEGLKGD-GEDEAIGIDIVKRA 444

Query: 434 LLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
           L    + IA N+G D      K++E  G       G +  +GE  +   AGI D   V R
Sbjct: 445 LEAPLRQIAENAGLDGAVVAEKVKELKGN-----FGFNAATGEYEDLVEAGIIDPTKVTR 499

Query: 494 Q-IINSWIISGL 504
             + N+  I+GL
Sbjct: 500 SALQNAASIAGL 511

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           LV+G+V++    HP MPK V+NA I   +  +E EK+++
Sbjct: 210 LVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEI 248

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           + +P A ++   S   DD  GDGTTS  ++  ELL++A+  +A+   K+H
Sbjct: 66  VDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQ---KIH 112

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKVERELADLLA 559
           G+HP  I +G+ QA   A+E LE +      S   +E L+  A TSL +K+        A
Sbjct: 118 GIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFA 177

Query: 560 E 560
           E
Sbjct: 178 E 178

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 292 LDLFAREGIIALRRAKRRNMERLSLACGG---TAMNSVEGLEPAHLGYAGSV----FEHV 344
            DL    GI  +   K   +ER+S   G    ++M+ +  L    LG   S     +   
Sbjct: 145 QDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDL--LTSPKLGTCESFRVRTYVEE 202

Query: 345 LGEEK-FTFVEECKNPQSVTILLKGPNKHTLAQTKDAV 381
            G  K   F E C      TILL+G +   L + K  V
Sbjct: 203 HGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVV 240

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261

>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 364 ILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKS 423
           I +    +  + + KD V D L A +  +++G +VPG G   + A  AL     T  G  
Sbjct: 379 IRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDK-LETANGDQ 436

Query: 424 RLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSA 483
           R G++    AL    + IA N+G +    + KL+E  G       G +  + E  +  + 
Sbjct: 437 RTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKPG-----GYGFNAATNEYGDLYAQ 491

Query: 484 GIYDNLTVKR 493
           G+ D + V R
Sbjct: 492 GVIDPVKVVR 501

Length = 541

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           + +P A ++   S   D+  GDGTTS V++ GELL++A+  + +   K+H
Sbjct: 78  LDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQ---KIH 124

Length = 533

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L++G+V++    HP MPK V+NA I   +  +E +K+++
Sbjct: 207 LIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEI 245

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTK 549
           G+HP++I  G+ +A   A+E ++ + +          RE+L   A T+L +K
Sbjct: 111 GVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 503 GLHPRVITEGFTQARLKALEVLESL---KITTPPSREILLDVARTSLRTKV---ERELAD 556
           GLHP  I EG+ +A  KALE+LE L   KI    ++E +    +T++ +K    E  L+ 
Sbjct: 103 GLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSP 162

Query: 557 LLAE 560
           L+AE
Sbjct: 163 LVAE 166

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 503 GLHPRVITEGFTQARLKALEVLESL---KITTPPSREILLDVARTSLRTKV---ERELAD 556
           GLHP  I +G+  A  KA+EVLE L   +I     ++ L+   + S+ +K    E  L+ 
Sbjct: 113 GLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLRDKKELIKALKASISSKQYGNEDFLSQ 172

Query: 557 LLAE 560
           L+A+
Sbjct: 173 LVAK 176

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 181 DMPKSVKNAHILTCNISMEYEKSSQG--GHQPEISLAKG----------IANQIQ--HPT 226
           D P+ V+ ++I+      +  ++S G  G    I   KG          I  Q+   HP 
Sbjct: 5   DKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPA 64

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELL 256
           A ++   S A D   GDGTTS V++ G LL
Sbjct: 65  AKMLVELSKAQDIEAGDGTTSVVILAGALL 94

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           EG+V++    HP MPK V+NA I   +  +E EK+++
Sbjct: 212 EGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEI 248

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHG-ARHPDMP-KSVKNAHILTCNISMEYEK 52
            + +++    +  +  +V+G+V D G      MP K ++N  IL  +  +E +K
Sbjct: 179 GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKK 232

Length = 524

>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
            + +P A L+   S + DD  GDGTT  V++ G LL+QA
Sbjct: 77  DVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQA 115

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532

>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLII 437
           KD V D L A +  +++G +VPG G   + A  AL   K    G  +LGI+    AL   
Sbjct: 390 KDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKAL-NGDEKLGIEIVRRALEAP 447

Query: 438 PKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQ-II 496
            + IA N+G D    + K+ E+         G D  +GE ++   AGI D   V R  + 
Sbjct: 448 LRQIAENAGVDGSVVVEKVLESPDG-----FGYDAATGEYVDMIEAGIIDPTKVVRSALQ 502

Query: 497 NSWIISGL 504
           N+  ++ L
Sbjct: 503 NAASVASL 510

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
            + HP A  +   S   D+  GDGTTS +++ GE+L  A+ ++
Sbjct: 66  DVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFL 108

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD 260
           +QHP A L+  AS   ++  GDGT   V++ GELL++A+
Sbjct: 59  VQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAE 97

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
            + H  A L+   S + DD  GDGTT  V++ G LL+QA
Sbjct: 73  DVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQA 111

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           N+G D  D LV+L+ A  E      G++V +GE+ +    G+ + L VK Q I S
Sbjct: 449 NAGLDPIDALVELR-AKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKS 502

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
            + HP A  +   S   D+  GDGTTS +++ GE+L  A+ ++
Sbjct: 66  DVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFL 108

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	629
KOG0359|consensus	520		100.0
KOG0361|consensus	543		100.0
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	100.0
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	100.0
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	100.0
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	100.0
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	100.0
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	100.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	100.0
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	100.0
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	100.0
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	100.0
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	100.0
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	100.0
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	100.0
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	100.0
KOG0364|consensus	527		100.0
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	100.0
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	100.0
KOG0363|consensus	527		100.0
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	100.0
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	100.0
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	100.0
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	100.0
KOG0358|consensus	534		100.0
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	100.0
KOG0360|consensus	545		100.0
KOG0361|consensus	543		100.0
KOG0362|consensus	537		100.0
KOG0362|consensus	537		100.0
PRK00013	542	groEL chaperonin GroEL; Reviewed	100.0
PTZ00114	555	Heat shock protein 60; Provisional	100.0
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	100.0
PRK12849	542	groEL chaperonin GroEL; Reviewed	100.0
PRK12851	541	groEL chaperonin GroEL; Reviewed	100.0
PRK12850	544	groEL chaperonin GroEL; Reviewed	100.0
PRK12852	545	groEL chaperonin GroEL; Reviewed	100.0
KOG0357|consensus	400		100.0
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	100.0
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	100.0
CHL00093	529	groEL chaperonin GroEL	100.0
KOG0358|consensus	534		100.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	100.0
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	100.0
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	100.0
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	100.0
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	100.0
PRK14104	546	chaperonin GroEL; Provisional	100.0
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	100.0
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	100.0
PLN03167	600	Chaperonin-60 beta subunit; Provisional	100.0
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	100.0
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	100.0
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	100.0
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	100.0
KOG0363|consensus	527		100.0
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	100.0
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	100.0
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	100.0
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	100.0
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03334	261	Fab1_TCP TCP-1 like domain of the eukaryotic phosp	99.98
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	99.98
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	99.98
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	99.97
PRK12849	542	groEL chaperonin GroEL; Reviewed	99.96
PRK12851	541	groEL chaperonin GroEL; Reviewed	99.96
PRK12852	545	groEL chaperonin GroEL; Reviewed	99.96
KOG0364|consensus	527		99.96
PRK00013	542	groEL chaperonin GroEL; Reviewed	99.96
PRK12850	544	groEL chaperonin GroEL; Reviewed	99.96
PTZ00114	555	Heat shock protein 60; Provisional	99.96
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	99.96
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	99.95
PRK14104	546	chaperonin GroEL; Provisional	99.95
CHL00093	529	groEL chaperonin GroEL	99.95
KOG0360|consensus	545		99.95
cd03333	209	chaperonin_like chaperonin_like superfamily. Chape	99.94
PLN03167	600	Chaperonin-60 beta subunit; Provisional	99.94
KOG0359|consensus	520		99.94
KOG0356|consensus	550		99.87
KOG0357|consensus	400		99.86
KOG0230|consensus	1598		99.8
cd03334	261	Fab1_TCP TCP-1 like domain of the eukaryotic phosp	99.11
KOG0356|consensus	550		98.94
cd03333	209	chaperonin_like chaperonin_like superfamily. Chape	98.63
KOG0230|consensus	1598		96.68

>KOG0359|consensus

Probab=100.00  E-value=4.1e-60  Score=486.86  Aligned_cols=321  Identities=54%  Similarity=0.850  Sum_probs=296.0

Q ss_pred             CceEeecCCCCCCCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccC--CCCcccCcchhhhHHHhcCchhhh
Q psy14945          1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSG--SGPWCATPGHAQVREERAHPDMQH   78 (629)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~--~~~~~~~~~~~~~~~e~~~~~~~~   78 (629)
                      |||||+|+|++..||+||+|+|||||+|||+||+++||||||+|||||||||+|  +||||++.+               
T Consensus       187 mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~---------------  251 (520)
T KOG0359|consen  187 MVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAE---------------  251 (520)
T ss_pred             HHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchh---------------
Confidence            899999999999999999999999999999999999999999999999999999  677777652               


Q ss_pred             hhhhcccccccccCCCCCCchhhHHHHhHhhhhcccccchhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEec
Q psy14945         79 QHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEY  158 (629)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~  158 (629)
                                                                                                      
T Consensus       252 --------------------------------------------------------------------------------  251 (520)
T KOG0359|consen  252 --------------------------------------------------------------------------------  251 (520)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccceEEEEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHh
Q psy14945        159 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMD  238 (629)
Q Consensus       159 Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~  238 (629)
                                                                                        +...+...|+++++
T Consensus       252 ------------------------------------------------------------------ere~L~~~eR~Fi~  265 (520)
T KOG0359|consen  252 ------------------------------------------------------------------EREVLVLAERKFID  265 (520)
T ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHHH
Confidence                                                                              23345557778888


Q ss_pred             hhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHh
Q psy14945        239 DMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLAC  318 (629)
Q Consensus       239 ~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~t  318 (629)
                      +.        +.+|+||             |.    .+|.-.+++||||+|..++.|++.||.+++|.+++.|+|+.++|
T Consensus       266 ~r--------~~kiiel-------------k~----~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lac  320 (520)
T KOG0359|consen  266 QR--------VRKIIEL-------------KR----KVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLAC  320 (520)
T ss_pred             HH--------HHHHHHH-------------hh----hcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhh
Confidence            88        8888853             32    35655578899999999999999999999999999999999999


Q ss_pred             CCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcc
Q psy14945        319 GGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVV  398 (629)
Q Consensus       319 Gg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV  398 (629)
                      ||..++|+++++++.+|+|+.++++++|+++|+|+++|+++..||||++||+++.+.+++.+++|++.++++++++..++
T Consensus       321 GG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i  400 (520)
T KOG0359|consen  321 GGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGI  400 (520)
T ss_pred             ccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCC
Q psy14945        399 PGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVL  478 (629)
Q Consensus       399 ~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~  478 (629)
                      ||+|++|.++..+|+....+++++.++++++|++||..+|++|++|+|+|..+.+..|...|..   ...|+|+.+|+.+
T Consensus       401 ~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~---~~~g~dl~~g~~~  477 (520)
T KOG0359|consen  401 PGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEV---TLRGLDLFRGEEC  477 (520)
T ss_pred             cCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhh---hhcccccccCCcc
Confidence            9999999999999998888899999999999999999999999999999999999999887753   2459999999999


Q ss_pred             CCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        479 NPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       479 d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ++...||||.++|+++.|++++-.|++.+.|+
T Consensus       478 ~~~~~gi~Dny~v~~~~l~s~~via~nlLlvD  509 (520)
T KOG0359|consen  478 DPSRKGIYDNYSVKKQLLRSEAVIATNLLLVD  509 (520)
T ss_pred             chhhccccchHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999999998888777776665

>KOG0361|consensus

Probab=100.00  E-value=4.2e-53  Score=429.27  Aligned_cols=365  Identities=22%  Similarity=0.317  Sum_probs=332.6

Q ss_pred             CCCchhhHHHHhHhhhhccccc--chhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEE
Q psy14945         95 HPDMPKSVKNAHILTCNISMEY--EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVV  172 (629)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~s~~~--~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv  172 (629)
                      ....++.+..+. .|+.+|+-.  +++.|+...|++|.... +.          .++..|.|+|++||++.||.+++|+.
T Consensus       148 ~~~~r~lL~KcA-~T~lsSKlI~~ek~fF~~MvVDAV~~ld-~~----------l~~~mIGIKKV~GG~~~dS~lv~GVA  215 (543)
T KOG0361|consen  148 KTELRELLEKCA-ATALSSKLIRQEKEFFAKMVVDAVLTLD-ND----------LDLNMIGIKKVPGGAMEDSLLVNGVA  215 (543)
T ss_pred             hhhHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHhhc-cc----------cchhhcceeecCCCccchhhhcccee
Confidence            334455566666 566677766  48899999999998542 11          24567899999999999999999999


Q ss_pred             EeccCCCC---CCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHH
Q psy14945        173 LNHGARHP---DMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTV  249 (629)
Q Consensus       173 ~~~~~~~~---~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv  249 (629)
                      |++.|.+.   ..|+++.||||+++|..||.+..+-+.         .+.+....++..++..||+.+.+.        +
T Consensus       216 FkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNA---------EiRv~~v~eyQ~iVDAEW~Ii~~K--------L  278 (543)
T KOG0361|consen  216 FKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNA---------EIRVDNVEEYQAIVDAEWNIIYDK--------L  278 (543)
T ss_pred             eeehccccchhhCccccCCceEEEEeeeeeecccccCc---------eeecCCHHHHHHHHhHHHHHHHHH--------H
Confidence            99998876   468999999999999999987666665         788999999999999999999998        8


Q ss_pred             HHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccccc
Q psy14945        250 LVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGL  329 (629)
Q Consensus       250 ~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l  329 (629)
                      ..+.+             .+.    .|    +|+.-.|.|.+.+||++++|.+..|++..|+.|+...+||++.++..++
T Consensus       279 ~ki~~-------------sGA----nV----VLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i  337 (543)
T KOG0361|consen  279 DKIHE-------------SGA----NV----VLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDI  337 (543)
T ss_pred             HHHHh-------------cCC----eE----EEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhc
Confidence            88873             332    22    5778889999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHH
Q psy14945        330 EPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAW  409 (629)
Q Consensus       330 ~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~  409 (629)
                      .+..+|.|..|+|++++.++|.+|++|+..+.||++|||+-+.+++|.+|+++||+.++|.++++..||+|||++||.++
T Consensus       338 ~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElS  417 (543)
T KOG0361|consen  338 KEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELS  417 (543)
T ss_pred             chhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchh
Q psy14945        410 HALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNL  489 (629)
Q Consensus       410 ~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~  489 (629)
                      ++|++|+..+.+++|+.+.+|++|||.||++||+|+|+|..+++.+||..|.. |..|+|++.+++.+.|+.+.+||+|.
T Consensus       418 k~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~-G~~w~Gvdi~~e~i~dn~~~~VwEP~  496 (543)
T KOG0361|consen  418 KYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ-GEKWYGVDINTEGIADNFEKFVWEPS  496 (543)
T ss_pred             HHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc-CCceeeeeecccchhhHHHhhccChH
Confidence            99999999999999999999999999999999999999999999999999987 78999999999999999999999999


Q ss_pred             hHHHHHhhhhhhcCCCCeEEe
Q psy14945        490 TVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       490 ~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .||.+++..|+|+|.....|+
T Consensus       497 ~VK~Nai~aateAa~lIlsvD  517 (543)
T KOG0361|consen  497 IVKINAITAATEAACLILSVD  517 (543)
T ss_pred             HHHHHHHHHHHHhhhheEehh
Confidence            999999999999999998887

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=100.00  E-value=1.8e-50  Score=452.69  Aligned_cols=373  Identities=49%  Similarity=0.729  Sum_probs=325.4

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.... .++.+||...  .++|+.++++|+.......        ...+++++++++++||++.||++++|++|++++
T Consensus       146 ~~l~~ia-~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~--------~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~  216 (531)
T TIGR02347       146 ELLLNVA-RTSLRTKLPIDLADQLTEIVVDAVLAIKKDG--------EQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGA  216 (531)
T ss_pred             HHHHHHH-HHHhccccchhhHHHHHHHHHHHHHHHhhcC--------CCCChhHeEEEEecCCCccccEEEeeEEEecCc
Confidence            3444444 3555666553  5778888888887531111        013566789999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .+|+||++++||||++++++|++++++...         .+.+++..++..++..|++++++.        +..|.++.+
T Consensus       217 ~~~~~~~~~~n~~Ill~~~~le~~~~~~~~---------~~~~~~~~~~~~~~~~E~~~l~~~--------v~~I~~~~~  279 (531)
T TIGR02347       217 RHPDMPRRVKNAYILTCNVSLEYEKTEVNS---------GFFYSNAEQREKLVEAERKFVDDR--------VKKIIELKK  279 (531)
T ss_pred             CCCCCceeccCceEEEEeCCCCCCccccCc---------eEEEcCHHHHHHHHHHHHHHHHHH--------HHHHHHhcc
Confidence            999999999999999999999999988876         788888999999999999999999        888874321


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCccc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA  337 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~  337 (629)
                      ++   +.   ..+++..     .++++++|++.+++||.+++|.+++++++++++|||++|||+++.++..++++.+|+|
T Consensus       280 ~~---~~---~~~~~~~-----lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~  348 (531)
T TIGR02347       280 KV---CG---KSPDKGF-----VVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWA  348 (531)
T ss_pred             cc---cc---cCCCccE-----EEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccc
Confidence            00   00   0000100     2457999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        338 GSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      +.+++..++++++++|.+|+++..|||+|||+++..++|.+|+++||++++++++++|++|||||++|++++.+|++++.
T Consensus       349 ~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~  428 (531)
T TIGR02347       349 GLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKK  428 (531)
T ss_pred             eEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999899999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhh
Q psy14945        418 TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  497 (629)
Q Consensus       418 ~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~  497 (629)
                      .+++.+++++++|++||++||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|.+.|+.+.|||||+.+|+++++
T Consensus       429 ~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~  507 (531)
T TIGR02347       429 SVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDE-GGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQ  507 (531)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-cCCceeeeccCCCccchhhccCEEcHHHHHHHHH
Confidence            888899999999999999999999999999999999999988764 4467899999999999999999999999999999


Q ss_pred             hhhhcCCCCeEEe
Q psy14945        498 SWIISGLHPRVIT  510 (629)
Q Consensus       498 ~a~e~a~~~~iV~  510 (629)
                      .|+++|...+.|+
T Consensus       508 ~A~e~a~~iLrID  520 (531)
T TIGR02347       508 SATVIASQLLLVD  520 (531)
T ss_pred             HHHHHHHHHHhHH
Confidence            9999998887776

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=100.00  E-value=1.4e-50  Score=454.07  Aligned_cols=360  Identities=30%  Similarity=0.453  Sum_probs=321.8

Q ss_pred             hhhhccccc---chhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcc
Q psy14945        108 LTCNISMEY---EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPK  184 (629)
Q Consensus       108 ~~~~~s~~~---~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~  184 (629)
                      .++..|+..   ..+.|+.++++|+..- +...   +...-..++++|+|++++||++.||++++|++|++++.+|.||+
T Consensus       152 ~tsl~sk~~~~~~~~~ls~l~~~A~~~v-~~~~---~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~  227 (519)
T TIGR02339       152 ETSLTGKASAEVTKDKLANLVVEAVKQV-AEKR---GDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPK  227 (519)
T ss_pred             HhhhccccccchhHHHHHHHHHHHHHHH-hhhc---cCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCcc
Confidence            455567744   3578899988888753 1100   00001246778999999999999999999999999999999999


Q ss_pred             cccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHH
Q psy14945        185 SVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIA  264 (629)
Q Consensus       185 ~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~  264 (629)
                      +++||||++++++||+++++.+.         ++.+++.+++.+++.+|++++++.        |..+.           
T Consensus       228 ~i~n~kIlll~~~Le~~~~~~~~---------~~~i~~~~~~~~~l~~E~~~i~~~--------v~~i~-----------  279 (519)
T TIGR02339       228 RVKNAKIALLDAPLEVEKTEIDA---------KIRITDPDQIKKFLDQEEAMLKEM--------VDKIA-----------  279 (519)
T ss_pred             ccCCCcEEEEeccccccccccce---------EEEECCHHHHHHHHHHHHHHHHHH--------HHHHH-----------
Confidence            99999999999999999998876         788888999999999999999999        88887           


Q ss_pred             HHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEE
Q psy14945        265 EVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHV  344 (629)
Q Consensus       265 ~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~  344 (629)
                        ..++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||+++++++.+++..+|+|+.+++.+
T Consensus       280 --~~g~----~l----vi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~  349 (519)
T TIGR02339       280 --DAGA----NV----VFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERK  349 (519)
T ss_pred             --hcCC----cE----EEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEE
Confidence              3443    12    4579999999999999999999999999999999999999999999999888999999999999


Q ss_pred             EcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchH
Q psy14945        345 LGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSR  424 (629)
Q Consensus       345 i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k  424 (629)
                      ++++++++|++|..+..+||+|||+++..++|.+|+++||+++++++++++++|||||++|++++.+|++++..+.++++
T Consensus       350 ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~  429 (519)
T TIGR02339       350 VGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQ  429 (519)
T ss_pred             ECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999888888999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        425 LGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       425 ~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      +++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|.+.|+.+.|||||+.||+++++.|+++|.
T Consensus       430 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~  508 (519)
T TIGR02339       430 LAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK-GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAAT  508 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-cCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887753 35679999999999999999999999999999999999988


Q ss_pred             CCeEEe
Q psy14945        505 HPRVIT  510 (629)
Q Consensus       505 ~~~iV~  510 (629)
                      ..+.++
T Consensus       509 ~iL~id  514 (519)
T TIGR02339       509 MILRID  514 (519)
T ss_pred             HHHhHh
Confidence            766554

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03343 cpn60 cpn60 chaperonin family

Probab=100.00  E-value=1.9e-50  Score=453.34  Aligned_cols=359  Identities=31%  Similarity=0.476  Sum_probs=320.9

Q ss_pred             hhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccc
Q psy14945        108 LTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKS  185 (629)
Q Consensus       108 ~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~  185 (629)
                      .++..|+...  .+.|+.++++|+... +...    ......++++++|++++||+++||++++|++|++++.||+||+.
T Consensus       151 ~ts~~sk~~~~~~~~l~~l~~~A~~~v-~~~~----~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~  225 (517)
T cd03343         151 KTSLTGKGAEAAKDKLADLVVDAVLQV-AEKR----DGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKR  225 (517)
T ss_pred             HHhhcccchhhHHHHHHHHHHHHHHHh-hhcc----CCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccc
Confidence            3444555554  477899999998753 1110    00012456789999999999999999999999999999999999


Q ss_pred             ccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        186 VKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       186 i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      ++||||++++++|||++++.+.         ++.+++.+++..++.+|++++++.        +..+.            
T Consensus       226 ~~n~~Illl~~~Le~~k~~~~~---------~~~i~s~~~~~~~~~~E~~~i~~~--------v~~i~------------  276 (517)
T cd03343         226 VENAKIALLDAPLEVKKTEIDA---------KIRITSPDQLQAFLEQEEAMLKEM--------VDKIA------------  276 (517)
T ss_pred             cCCCcEEEEeccccCCccccce---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            9999999999999999998876         788888899999999999999998        88887            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL  345 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i  345 (629)
                       ..++    .+    ++++++|++.+++||.+++|.+++++++++++|||++|||+++++++.+++..+|+|+.+++.++
T Consensus       277 -~~g~----~l----vi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~i  347 (517)
T cd03343         277 -DTGA----NV----VFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKV  347 (517)
T ss_pred             -hcCC----CE----EEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEE
Confidence             3343    11    46799999999999999999999999999999999999999999999999889999999999999


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHH
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRL  425 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~  425 (629)
                      +++++++|++|+++..|||+|||+++..++|.+++++||++++++++++|++|||||++|++++.+|++++....+++++
T Consensus       348 g~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~  427 (517)
T cd03343         348 GDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQL  427 (517)
T ss_pred             CCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999999989988999999999999999999999999999999999999999999999999999999988888889999


Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        426 GIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       426 ~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|.+.|+.+.|||||+.+|+++++.|+++|..
T Consensus       428 ~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~  506 (517)
T cd03343         428 AVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEK-GNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATM  506 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-cCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987753 356799999999999999999999999999999999999887


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      .+.++
T Consensus       507 iL~id  511 (517)
T cd03343         507 ILRID  511 (517)
T ss_pred             HHhhh
Confidence            76654

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=100.00  E-value=1.7e-50  Score=454.13  Aligned_cols=360  Identities=24%  Similarity=0.351  Sum_probs=318.7

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCcccccccc-ceeEEEecCCCccceEEEEeEEEeccCCCCCCccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHIL-TCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKS  185 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~-~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~  185 (629)
                      ++.+|+..+  .+.|+.++++++..-.....   .... ..++. +++|++++||++.||++++|++|+++..++.||++
T Consensus       153 t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~---~~~~-~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~  228 (525)
T TIGR02344       153 SCIGTKFVSRWSDLMCDLALDAVRTVKRDLG---NGRK-EIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRY  228 (525)
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHhhcccc---CCCC-ccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccc
Confidence            455676654  57788888888875310000   0000 11222 37899999999999999999999999999999999


Q ss_pred             ccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        186 VKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       186 i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      ++||||++++++|++++++.+.         ++.+++..++.+++.+|++++++.        +..+.            
T Consensus       229 ~~n~kIlll~~~Le~~~~~~~~---------~i~i~~~~~~~~~l~~E~~~l~~~--------v~~i~------------  279 (525)
T TIGR02344       229 IENPRIVLLDCPLEYKKGESQT---------NVEIMKEEDWNRILQMEEEYVQLM--------CEDII------------  279 (525)
T ss_pred             cCCCCEEEEecccccccccccc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            9999999999999999998876         788888899999999999999998        88887            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc-cceEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVFEHV  344 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~-~~~v~e~~  344 (629)
                       ..++    .+    +++++++++.+++||.+++|.+++++++.+++|||++|||+++++++.+++..+|+ |+.+++.+
T Consensus       280 -~~~~----~v----Ii~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~  350 (525)
T TIGR02344       280 -AVKP----DL----VITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKK  350 (525)
T ss_pred             -hcCC----CE----EEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEE
Confidence             3344    22    46799999999999999999999999999999999999999999999999899999 99999999


Q ss_pred             EcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchH
Q psy14945        345 LGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSR  424 (629)
Q Consensus       345 i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k  424 (629)
                      ++++++++|++|+++..|||+|||+++..++|++|+++||+++++++++++.+|||||++|++++.+|++++..+.+.++
T Consensus       351 ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~  430 (525)
T TIGR02344       351 IGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ  430 (525)
T ss_pred             ECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999998999999999999999999999999999999999999999999999999999999998888888999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        425 LGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       425 ~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      +++++|++||+.||++|++|+|+|+.+++.+|+..|...+..++|+|+.+|.+.|+.+.|||||+.||+++++.|+++|.
T Consensus       431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~  510 (525)
T TIGR02344       431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESAC  510 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988864224689999999999999999999999999999999999988


Q ss_pred             CCeEEe
Q psy14945        505 HPRVIT  510 (629)
Q Consensus       505 ~~~iV~  510 (629)
                      ..+.++
T Consensus       511 ~iL~id  516 (525)
T TIGR02344       511 MLLRID  516 (525)
T ss_pred             HHHhhh
Confidence            876665

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=100.00  E-value=3.9e-50  Score=450.97  Aligned_cols=363  Identities=24%  Similarity=0.311  Sum_probs=320.2

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhc-CCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNH-GARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      .+..... ++..|+...  .+.|+.++++++..-. +..        ...+++.++|++++||++.||++++|++|++++
T Consensus       155 ~l~~ia~-tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~--------~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~  225 (526)
T cd03339         155 PLIQTAM-TSLGSKIVSRCHRQFAEIAVDAVLSVADLER--------KDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDF  225 (526)
T ss_pred             HHHHHHH-HhhcccchhhHHHHHHHHHHHHHHHHhhcCC--------CccchHHeEEEEecCcCHHHcceeeeEEEeccc
Confidence            3444443 344566553  5788999998887421 110        123567899999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .|++||+.++||||++++++|++++.+.+.         ++.+++..++.+++..|++++...        +..+.    
T Consensus       226 ~~~~m~~~~~n~kI~ll~~~le~~~~~~~~---------~~~i~s~~~~~~~~~~E~~~i~~~--------v~~i~----  284 (526)
T cd03339         226 SHPQMPKEVKDAKIAILTCPFEPPKPKTKH---------KLDITSVEDYKKLQEYEQKYFREM--------VEQVK----  284 (526)
T ss_pred             CCCCCCceecCCCEEEEEecccCCccccce---------EEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----
Confidence            999999999999999999999999887665         677888889999999999999888        88776    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCccc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA  337 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~  337 (629)
                               ..++    .    .++++++|++.+++||.+++|.+++++++++++|||++|||+++.+++++++..+|+|
T Consensus       285 ---------~~g~----~----lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~  347 (526)
T cd03339         285 ---------DAGA----N----LVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKA  347 (526)
T ss_pred             ---------HCCC----C----EEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccC
Confidence                     3333    1    2467999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcC--eeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        338 GSVFEHVLGE--EKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       338 ~~v~e~~i~~--~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      +.+++..++.  +++++|++|+++..+||+|||+++..++|++|+++||+++++++++++++|||||++|++++.+|+++
T Consensus       348 ~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~  427 (526)
T cd03339         348 GLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKA  427 (526)
T ss_pred             ceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHH
Confidence            9999999885  68889998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHH
Q psy14945        416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  495 (629)
Q Consensus       416 ~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~  495 (629)
                      +....+.+++++++||+||+.||++|++|+|+|+.+++.+|+..|...+..++|+|+.+|.+.|+.+.|||||+.||+++
T Consensus       428 ~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~  507 (526)
T cd03339         428 ADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQ  507 (526)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHH
Confidence            88888889999999999999999999999999999999999988854235679999999999999999999999999999


Q ss_pred             hhhhhhcCCCCeEEe
Q psy14945        496 INSWIISGLHPRVIT  510 (629)
Q Consensus       496 l~~a~e~a~~~~iV~  510 (629)
                      ++.|+++|...+.++
T Consensus       508 l~~A~e~a~~iL~iD  522 (526)
T cd03339         508 ILLATQVVKMILKID  522 (526)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999998776655

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=100.00  E-value=1.3e-49  Score=446.98  Aligned_cols=368  Identities=27%  Similarity=0.353  Sum_probs=321.7

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.+.. .++.+||...  .+.|+.++++|+..- +..  + +......++++++|++++||++.||++++|++|++++
T Consensus       138 ~~l~~ia-~tsl~sK~~~~~~~~ls~l~~~A~~~v-~~~--~-~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~  212 (527)
T cd03335         138 ESLINVA-KTSMSSKIIGADSDFFANMVVDAILAV-KTT--N-EKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTR  212 (527)
T ss_pred             HHHHHHH-HHHhcccccchhHHHHHHHHHHHHHHh-hcc--c-ccCCCccCHHHeEEEEecCcChhhcceeeeEEEeccc
Confidence            3444444 4555777664  477888888888753 110  0 0011124677899999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .++.||++++||||++++++|++++++.+.         .+.+++...+..+...|++++++.        +..+.    
T Consensus       213 ~~~~m~~~i~n~kIlll~~~Le~~~~~~~~---------~~~~~~~~~le~~~~~E~~~l~~~--------i~~i~----  271 (527)
T cd03335         213 ASQGMPTRVKNAKIACLDFNLQKTKMKLGV---------QVVVTDPEKLEKIRQRESDITKER--------IKKIL----  271 (527)
T ss_pred             CCCCCcccccCCcEEEEeccCCCCccccce---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----
Confidence            999999999999999999999999888776         677888888899999999999888        77776    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccccc------Cc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGL------EP  331 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l------~~  331 (629)
                               ..++    .+    ++++++|++.+++||.+++|.+++++++++++|||++|||++++++..+      ++
T Consensus       272 ---------~~g~----~l----vi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~  334 (527)
T cd03335         272 ---------AAGA----NV----VLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDP  334 (527)
T ss_pred             ---------HcCC----CE----EEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCH
Confidence                     3343    12    4679999999999999999999999999999999999999999997544      44


Q ss_pred             CCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       332 ~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                      ..+|+|+.+++.+++++++++|.+|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+
T Consensus       335 ~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~  414 (527)
T cd03335         335 SYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIY  414 (527)
T ss_pred             hhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCC-------CceEEEEeccCCCCCCCccc
Q psy14945        412 LQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP-------GVAVGVDVNSGEVLNPTSAG  484 (629)
Q Consensus       412 L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~-------~~~~Gid~~t~~i~d~~e~~  484 (629)
                      |++++..+.+++++++++|++||+.||++|++|+|+|+.+++.+|+..|.+..       +.++|+|+.+|.+.|+.+.|
T Consensus       415 L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~g  494 (527)
T cd03335         415 LENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAG  494 (527)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhcc
Confidence            99998888889999999999999999999999999999999999998887521       35789999999999999999


Q ss_pred             ccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        485 IYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       485 I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ||||+.+|+++++.|+++|...+.|+
T Consensus       495 V~dp~~~k~~~i~~A~e~a~~iLrID  520 (527)
T cd03335         495 VLEPTVSKIKSLKFATEAAITILRID  520 (527)
T ss_pred             ceecHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999998887776

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=100.00  E-value=9.3e-50  Score=448.07  Aligned_cols=360  Identities=25%  Similarity=0.303  Sum_probs=319.9

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.... .|+.+|+...  .+.|+.++++++..-..           ..+++.+++++++||++.||++++|+++++++
T Consensus       159 ~~l~~va-~t~l~sk~~~~~~~~l~~i~~~av~~i~~-----------~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~  226 (533)
T PTZ00212        159 EDLLNIA-RTTLSSKLLTVEKDHFAKLAVDAVLRLKG-----------SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKI  226 (533)
T ss_pred             HHHHHHH-HHHhcccccchhHHHHHHHHHHHHHHHhc-----------cCCccceEEEEecCcCccccEEEEeEEEeccc
Confidence            3444443 3455777553  57899999988875311           12467799999999999999999999999987


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .+ .||++++||||++++++||+++++.+..        ++.+++.+++..+...|++++++.        +..|.    
T Consensus       227 ~~-~~~~~i~n~kIll~~~~Le~~k~~~~~~--------~~~i~~~~~~~~l~~~E~~~i~~~--------v~~Ii----  285 (533)
T PTZ00212        227 GV-GQPKRLENCKILVANTPMDTDKIKIYGA--------KVKVDSMEKVAEIEAAEKEKMKNK--------VDKIL----  285 (533)
T ss_pred             CC-CCCccccCCcEEEEeCCCCCCcccccCc--------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----
Confidence            65 5899999999999999999999987331        677778888999999999998888        88887    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCccc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA  337 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~  337 (629)
                               ..++    .+    ++++++|++.++++|.+++|.+++++++++++||+++|||+++++++.+++..+|+|
T Consensus       286 ---------~~gv----~v----vv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~  348 (533)
T PTZ00212        286 ---------AHGC----NV----FINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHC  348 (533)
T ss_pred             ---------hcCC----eE----EEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCC
Confidence                     3343    22    457999999999999999999999999999999999999999999999998999999


Q ss_pred             ceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        338 GSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      +.+++..++++++++|++|..+..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.
T Consensus       349 ~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~  428 (533)
T PTZ00212        349 DLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAK  428 (533)
T ss_pred             ceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998889999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhh
Q psy14945        418 TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  497 (629)
Q Consensus       418 ~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~  497 (629)
                      ...+++++++++|++||+.||++|++|+|+|+.+++.+|+..|.. +..++|+|+.+|.+.|+.+.|||||+.||+++++
T Consensus       429 ~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~-~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~  507 (533)
T PTZ00212        429 KVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYK-GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLC  507 (533)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCccceeccCCcccchhhccceecHHHHHHHHH
Confidence            888899999999999999999999999999999999999988864 4567999999999999999999999999999999


Q ss_pred             hhhhcCCCCeEEe
Q psy14945        498 SWIISGLHPRVIT  510 (629)
Q Consensus       498 ~a~e~a~~~~iV~  510 (629)
                      .|+++|...+.++
T Consensus       508 ~A~e~a~~iL~id  520 (533)
T PTZ00212        508 SATEAAEMILRVD  520 (533)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999998877765

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=100.00  E-value=1.2e-49  Score=445.83  Aligned_cols=359  Identities=25%  Similarity=0.308  Sum_probs=319.8

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.+.. .|+.+|+...  .++|+.++++|+..- +.          ..+++++++++++|++++||++++|++++++.
T Consensus       147 ~~l~~ia-~t~lssk~~~~~~~~l~~l~~~A~~~v-~~----------~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~  214 (517)
T cd03336         147 EDLLNIA-RTTLSSKILTQDKEHFAELAVDAVLRL-KG----------SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKI  214 (517)
T ss_pred             HHHHHHH-HhhccccccchhHHHHHHHHHHHHHHh-hc----------cCCccceeEEEccCCCccceEEEeeEEEeccc
Confidence            3444444 3556777653  578999999998753 11          12457899999999999999999999999987


Q ss_pred             CCCCCcccccCeeEEEeecccccccccc-CCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHH
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQ-GGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELL  256 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~-~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL  256 (629)
                      .+ .||++++||||++++++|++++++. +.         ++.+++.+++..+...|++++.+.        +..|.   
T Consensus       215 ~~-~~~~~~~n~kIli~~~~le~~~~~~~~~---------~~~~~~~~~~~~l~~~E~~~~~~~--------v~~I~---  273 (517)
T cd03336         215 GV-NQPKRIENAKILIANTPMDTDKIKIFGA---------KVRVDSTAKVAEIEEAEKEKMKNK--------VEKIL---  273 (517)
T ss_pred             CC-CCCCeeccccEEEEecCCCcccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH---
Confidence            65 4899999999999999999999887 44         677888888988999999988888        88887   


Q ss_pred             hhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc
Q psy14945        257 KQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY  336 (629)
Q Consensus       257 ~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~  336 (629)
                                ..++    .+    ++++++|++.+++||++++|.+++++++++++||+++|||+++++++.+++..+|+
T Consensus       274 ----------~~gv----~~----v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~  335 (517)
T cd03336         274 ----------KHGI----NC----FINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGT  335 (517)
T ss_pred             ----------hcCC----eE----EEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccc
Confidence                      3343    11    45799999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhh
Q psy14945        337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK  416 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~  416 (629)
                      |+.+++..++++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++
T Consensus       336 ~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~  415 (517)
T cd03336         336 CKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELA  415 (517)
T ss_pred             cceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHh
Q psy14945        417 NTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  496 (629)
Q Consensus       417 ~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l  496 (629)
                      .++.+++++++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|.+.|+.+.|||||+.||++++
T Consensus       416 ~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l  494 (517)
T cd03336         416 KKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN-GNTTAGLDMRKGTVGDMKELGITESFKVKRQVL  494 (517)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCceeeecCCCCccchhhcCceecHHHHHHHH
Confidence            8888999999999999999999999999999999999999988864 456799999999999999999999999999999


Q ss_pred             hhhhhcCCCCeEEe
Q psy14945        497 NSWIISGLHPRVIT  510 (629)
Q Consensus       497 ~~a~e~a~~~~iV~  510 (629)
                      +.|+++|...+.++
T Consensus       495 ~~A~e~a~~iL~id  508 (517)
T cd03336         495 LSASEAAEMILRVD  508 (517)
T ss_pred             HHHHHHHHHHHhHh
Confidence            99999988776665

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=100.00  E-value=1.6e-49  Score=445.85  Aligned_cols=363  Identities=24%  Similarity=0.304  Sum_probs=320.0

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhc-CCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNH-GARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      .+..... ++..|+...  .+.|+.++++++..-. +.        ....++++++|++++||++.||++++|++|++++
T Consensus       159 ~l~~ia~-t~l~sK~~~~~~~~ls~i~~~av~~i~~~~--------~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~  229 (532)
T TIGR02343       159 PLIQAAK-TSLGSKIVSKCHRRFAEIAVDAVLMVADME--------RRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDF  229 (532)
T ss_pred             HHHHHHH-HhhccchhhHHHHHHHHHHHHHHHhhhhcC--------CCcCCHHHeeEEEecCCCcccceeEeeEEEecCc
Confidence            3444443 344566443  5778888888887421 11        0134678999999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .+++||+.++||||++++++|++++++.+.         ++.+++..++.++...|++++...        +..+.    
T Consensus       230 ~~~~m~~~~~n~kI~l~~~~le~~~~~~~~---------~~~i~~~~~~~~~~~~E~~~l~~~--------l~~i~----  288 (532)
T TIGR02343       230 SHPQMPKEVKDAKIAILTCPFEPPKPKTKH---------KLDISSVEEYKKLQKYEQQKFAEM--------IDDIK----  288 (532)
T ss_pred             CCCCCCeeecCCcEEEEEeeccccccccce---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----
Confidence            999999999999999999999999998765         677888889999999999998888        77776    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCccc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA  337 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~  337 (629)
                               ..+.    .    .++++++|++.+++||.+++|.+++++++++++|||++|||+++++++.+++..+|+|
T Consensus       289 ---------~~g~----~----lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a  351 (532)
T TIGR02343       289 ---------KSGA----N----IVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKA  351 (532)
T ss_pred             ---------HcCC----C----EEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCccc
Confidence                     3332    1    1457999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcC--eeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        338 GSVFEHVLGE--EKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       338 ~~v~e~~i~~--~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      +.+++.++++  .+++++++|+++..+||+|||+++..++|.+|+++||+++++++++++.+|||||++|++++.+|+++
T Consensus       352 ~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~  431 (532)
T TIGR02343       352 GLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQE  431 (532)
T ss_pred             ceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHH
Confidence            9999999987  47889988998999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHH
Q psy14945        416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  495 (629)
Q Consensus       416 ~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~  495 (629)
                      +..+.+.+++++++|++||+.||++|++|+|+|+.+++.+|+..|...+..++|+|+.++.+.|+.+.|||||+.||+++
T Consensus       432 ~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~a  511 (532)
T TIGR02343       432 ADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQ  511 (532)
T ss_pred             hccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHH
Confidence            88888889999999999999999999999999999999999988764234678999999999999999999999999999


Q ss_pred             hhhhhhcCCCCeEEe
Q psy14945        496 INSWIISGLHPRVIT  510 (629)
Q Consensus       496 l~~a~e~a~~~~iV~  510 (629)
                      ++.|+++|...+.++
T Consensus       512 l~~A~e~a~~iL~id  526 (532)
T TIGR02343       512 IQLATQLVRMILKID  526 (532)
T ss_pred             HHHHHHHHHHHHhHh
Confidence            999999988766554

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=100.00  E-value=4.4e-49  Score=442.38  Aligned_cols=360  Identities=23%  Similarity=0.311  Sum_probs=320.2

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.... .+..+||...  .++|+.++++|+... +.          ..++++++|++++||++.||++++|++|++++
T Consensus       149 ~~l~~ia-~t~l~sK~~~~~~~~l~~l~~~A~~~v-~~----------~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~  216 (522)
T cd03340         149 ELLEKCA-ATALNSKLIASEKEFFAKMVVDAVLSL-DD----------DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTF  216 (522)
T ss_pred             HHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHh-cc----------cCChhHheEeeecCCChhhceeeeeEEEeccc
Confidence            3344444 3455667554  578999999999854 11          12467899999999999999999999999999


Q ss_pred             CCCC---CcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHH
Q psy14945        178 RHPD---MPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGE  254 (629)
Q Consensus       178 ~~~~---m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~e  254 (629)
                      .+|+   ||++++||||++++++|++++++.+.         .+.+++..++..++..|++++.+.        +..+. 
T Consensus       217 ~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~---------~i~i~~~~~~~~~~~~E~~~l~~~--------v~~i~-  278 (522)
T cd03340         217 SYAGFEQQPKKFKNPKILLLNVELELKAEKDNA---------EVRVEDPEEYQAIVDAEWKIIYDK--------LEKIV-  278 (522)
T ss_pred             CccccccCCccccCCeEEEEeCCCCCCccccce---------EEEECCHHHHHHHHHHHHHHHHHH--------HHHHH-
Confidence            9886   58999999999999999998887665         677777778888889999888888        77776 


Q ss_pred             HHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCC
Q psy14945        255 LLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL  334 (629)
Q Consensus       255 lL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~l  334 (629)
                                  ..++    .+    ++++++|+|.+++||.+++|.+++++++.+++|||++|||+++.+++.+++..+
T Consensus       279 ------------~~g~----~v----vl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~L  338 (522)
T cd03340         279 ------------KSGA----NV----VLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVL  338 (522)
T ss_pred             ------------hcCC----CE----EEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCcccc
Confidence                        3343    22    457999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHh
Q psy14945        335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN  414 (629)
Q Consensus       335 G~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~  414 (629)
                      |+|+.+++.++++++|++|++|+.+..+|+++||+++..++|.+|+++||+++++++++++++|||||++|++++.+|++
T Consensus       339 G~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~  418 (522)
T cd03340         339 GTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRD  418 (522)
T ss_pred             ccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCC-ceEEEEeccCCCCCCCcccccchhhHHH
Q psy14945        415 YKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG-VAVGVDVNSGEVLNPTSAGIYDNLTVKR  493 (629)
Q Consensus       415 ~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~-~~~Gid~~t~~i~d~~e~~I~D~~~Vk~  493 (629)
                      ++....+++++++++||+||+.||++|++|+|+|+.+++.+|+..|.. ++ .++|+|+.+|.+.|+.+.|||||+.||+
T Consensus       419 ~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~  497 (522)
T cd03340         419 YSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQ-GGGKWYGVDINNEGIADNFEAFVWEPSLVKI  497 (522)
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCeeeeeCCCCcccchhhcCceEcHHHHH
Confidence            987788899999999999999999999999999999999999988875 34 6899999999999999999999999999


Q ss_pred             HHhhhhhhcCCCCeEEe
Q psy14945        494 QIINSWIISGLHPRVIT  510 (629)
Q Consensus       494 ~~l~~a~e~a~~~~iV~  510 (629)
                      ++++.|+++|...+.++
T Consensus       498 ~~i~~A~e~a~~iL~id  514 (522)
T cd03340         498 NALTAATEAACLILSVD  514 (522)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999988776665

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=100.00  E-value=1.1e-48  Score=438.08  Aligned_cols=363  Identities=19%  Similarity=0.242  Sum_probs=319.4

Q ss_pred             HHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCC
Q psy14945        102 VKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARH  179 (629)
Q Consensus       102 ~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~  179 (629)
                      +.... .++..|+...  .+.|+.++++++......      ...+..++++++|+++.||++.||++++|++|++++.+
T Consensus       140 l~~va-~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~------~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~  212 (517)
T TIGR02342       140 LIKSA-TTSLSSKVVSQYSSLLAPLAVDAVLKVIDP------ENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASR  212 (517)
T ss_pred             HHHHH-HHHhccccchhHHHHHHHHHHHHHHHHhcc------ccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccc
Confidence            44444 3444577663  677889988888753211      01123467889999999999999999999999999998


Q ss_pred             -CCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhh
Q psy14945        180 -PDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ  258 (629)
Q Consensus       180 -~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~  258 (629)
                       ++||++++||||++++|+|++++++...         .+.+.+..++..++..|++++...        +..+.     
T Consensus       213 ~~~mpk~i~n~kI~ll~~~Le~~~~~~~~---------~~~~~~~~~~~~~~~~E~~~l~~~--------v~~i~-----  270 (517)
T TIGR02342       213 SAGGPTRIEKAKIGLIQFQISPPKTDMEN---------QVIVNDYAQMDRVLKEERKYILNI--------VKKIK-----  270 (517)
T ss_pred             cCCCCccccCCcEEEEecCCCCCcccccc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----
Confidence             4899999999999999999999888776         677777788999999999888888        77776     


Q ss_pred             hHHHHHHHhhccccccCccccccccccCC-----CHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCC
Q psy14945        259 ADIYIAEVNLKMHKFAPDCSTSDRYRTGI-----DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAH  333 (629)
Q Consensus       259 Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i-----~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~  333 (629)
                              ..++    .+    ++++++|     ++.+++||.+++|.+++++++++++|||++|||+++++++.+++..
T Consensus       271 --------~~g~----~l----vi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~  334 (517)
T TIGR02342       271 --------KTGC----NV----LLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADK  334 (517)
T ss_pred             --------hcCC----CE----EEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCccc
Confidence                    3333    11    3467777     9999999999999999999999999999999999999999999899


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCC-ccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHAL  412 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~-~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L  412 (629)
                      +|+|+.+++.++++.+++++.+|+++ ..+||+|||+++..++|.+|+++||+++++++++++.+|||||++|++++.+|
T Consensus       335 LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l  414 (517)
T TIGR02342       335 LGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKL  414 (517)
T ss_pred             CcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHH
Confidence            99999999999999999999888874 89999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHH
Q psy14945        413 QNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVK  492 (629)
Q Consensus       413 ~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk  492 (629)
                      ++++....+.+++++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|.+.|+.+.|||||+.||
T Consensus       415 ~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~i~d~~~~gI~dp~~vk  493 (517)
T TIGR02342       415 SKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHAN-GEKYAGISVRKGGITDMLEEEVLQPLLVT  493 (517)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCccceecCCCCccchhhccceEcHHHH
Confidence            99988888899999999999999999999999999999999999988864 45689999999999999999999999999


Q ss_pred             HHHhhhhhhcCCCCeEEe
Q psy14945        493 RQIINSWIISGLHPRVIT  510 (629)
Q Consensus       493 ~~~l~~a~e~a~~~~iV~  510 (629)
                      +++++.|+++|...+.|+
T Consensus       494 ~~ai~~A~e~a~~iL~iD  511 (517)
T TIGR02342       494 TSAVTLASETVRMILKID  511 (517)
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999998877765

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=100.00  E-value=4.6e-48  Score=434.93  Aligned_cols=367  Identities=25%  Similarity=0.355  Sum_probs=317.6

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR  178 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~  178 (629)
                      .+.+.. .++.+||...  .+.|+.++++|+..- +...   +......+++++++++++||++.||++++|++|++++.
T Consensus       143 ~l~~va-~tsl~sK~~~~~~~~ls~l~~~A~~~v-~~~~---~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~  217 (536)
T TIGR02340       143 ALINVA-KTSMSSKIIGLDSDFFSNIVVDAVLAV-KMTN---ENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRA  217 (536)
T ss_pred             HHHHHH-HHHhccccchhhHHHHHHHHHHHHHHH-hccc---ccCccccchHHeEEEEecCCCccccEEEEEEEEecccC
Confidence            343333 3455666553  467888888888753 1100   01111246788999999999999999999999999999


Q ss_pred             CCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhh
Q psy14945        179 HPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ  258 (629)
Q Consensus       179 ~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~  258 (629)
                      ++.||++++||||++++++|++++++.+.         ++.+++...+..+...|++++.+.        +..|.     
T Consensus       218 ~~~m~~~~~n~kIli~~~~L~~~~~~~~~---------~~~~~~~~~le~~~~~E~~~i~~~--------i~~I~-----  275 (536)
T TIGR02340       218 SQQMPKRIKKAKIACLDFNLQKQKMALGV---------QIVVDDPAKLEGIRQREADITKER--------IKKIL-----  275 (536)
T ss_pred             CCCCcceecCCcEEEEecCCCCCcccCce---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----
Confidence            99999999999999999999999888765         788888888999998888888777        77776     


Q ss_pred             hHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccc------cCcC
Q psy14945        259 ADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEG------LEPA  332 (629)
Q Consensus       259 Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~------l~~~  332 (629)
                              ..++    .+    +++++++++.+++||.+++|.+++++++++++|||++|||++++++..      +++.
T Consensus       276 --------~~g~----~l----vi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~  339 (536)
T TIGR02340       276 --------KAGA----NV----VLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDAS  339 (536)
T ss_pred             --------HcCC----CE----EEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCcccccccc
Confidence                    3333    11    457999999999999999999999999999999999999999999754      3455


Q ss_pred             CCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHH
Q psy14945        333 HLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHAL  412 (629)
Q Consensus       333 ~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L  412 (629)
                      .+|+|+.+++.+++++++++|++|+.+..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|
T Consensus       340 ~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l  419 (536)
T TIGR02340       340 YLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYL  419 (536)
T ss_pred             ccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHH
Confidence            69999999999999999999998988899999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCC-------CCceEEEEeccCCCCCCCcccc
Q psy14945        413 QNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA-------PGVAVGVDVNSGEVLNPTSAGI  485 (629)
Q Consensus       413 ~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~-------~~~~~Gid~~t~~i~d~~e~~I  485 (629)
                      ++++..+.+++++++++|++||+.||++|++|+|+|+.+++.+|+..|.+.       +..++|+|+.++.+.|+.+.||
T Consensus       420 ~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI  499 (536)
T TIGR02340       420 ENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGV  499 (536)
T ss_pred             HHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccc
Confidence            988877888899999999999999999999999999999999999887652       1347899999999999999999


Q ss_pred             cchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        486 YDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       486 ~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |||+.+|+++++.|+++|...+.++
T Consensus       500 ~Dp~~~k~~~l~~A~e~a~~iL~ID  524 (536)
T TIGR02340       500 LEPAVSKVKSLKFATEAAITILRID  524 (536)
T ss_pred             eecHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999988877765

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=100.00  E-value=4e-48  Score=434.12  Aligned_cols=358  Identities=22%  Similarity=0.261  Sum_probs=315.6

Q ss_pred             hhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCC-Ccc
Q psy14945        108 LTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPD-MPK  184 (629)
Q Consensus       108 ~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~-m~~  184 (629)
                      .++..||...  .++++.++++|+... |...     .....++++++|++++||+++||++++|++|++++.+++ ||+
T Consensus       144 ~ts~~sK~~~~~~~~ls~li~~A~~~v-~~~~-----~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~  217 (515)
T cd03338         144 TTSLNSKVVSQYSSLLAPIAVDAVLKV-IDPA-----TATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPT  217 (515)
T ss_pred             HHHhccccchhhHHHHHHHHHHHHHHh-hccc-----ccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCc
Confidence            3444566553  466888888888753 2100     001345788999999999999999999999999999987 499


Q ss_pred             cccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHH
Q psy14945        185 SVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIA  264 (629)
Q Consensus       185 ~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~  264 (629)
                      .++||||++++|+|++++++...         .+.+++..++..++.+|++++...        +..+.           
T Consensus       218 ~i~n~ki~ll~~~le~~~~~~~~---------~~~i~~~~~~~~~~~~E~~~i~~~--------v~~i~-----------  269 (515)
T cd03338         218 RIEKAKIGLIQFCLSPPKTDMDN---------NIVVNDYAQMDRILREERKYILNM--------CKKIK-----------  269 (515)
T ss_pred             cccCCcEEEEeccccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----------
Confidence            99999999999999999888776         566777778999999999888888        77776           


Q ss_pred             HHhhccccccCccccccccccCC-----CHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccce
Q psy14945        265 EVNLKMHKFAPDCSTSDRYRTGI-----DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGS  339 (629)
Q Consensus       265 ~~~~~~~~~l~v~~~~~l~~k~i-----~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~  339 (629)
                        ..++    .+    ++++++|     ++.+.+||.+++|.+++++++.+++|||++|||+++++++.++...+|+|+.
T Consensus       270 --~~g~----~l----vi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~  339 (515)
T cd03338         270 --KSGC----NV----LLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADL  339 (515)
T ss_pred             --hcCC----CE----EEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCce
Confidence              3343    11    3457765     8999999999999999999999999999999999999999999889999999


Q ss_pred             EEEEEEcCeeEEEEeecCC-CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhh
Q psy14945        340 VFEHVLGEEKFTFVEECKN-PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNT  418 (629)
Q Consensus       340 v~e~~i~~~~~~~~~~~~~-~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~  418 (629)
                      +++.++++.++++|.+|++ +..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++..
T Consensus       340 v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~  419 (515)
T cd03338         340 VEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWART  419 (515)
T ss_pred             EEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhcc
Confidence            9999999999999998887 689999999999999999999999999999999999999999999999999999998877


Q ss_pred             cCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhh
Q psy14945        419 VKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  498 (629)
Q Consensus       419 i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~  498 (629)
                      ..+.+++++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.++.+.|+.+.||+||+.+|+++++.
T Consensus       420 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~  498 (515)
T cd03338         420 LTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ-GEKNAGINVRKGAITNILEENVVQPLLVSTSAITL  498 (515)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCCccceeccCCCccchhhcCceecHHHHHHHHHH
Confidence            88889999999999999999999999999999999999988864 45689999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEe
Q psy14945        499 WIISGLHPRVIT  510 (629)
Q Consensus       499 a~e~a~~~~iV~  510 (629)
                      |+++|...+.|+
T Consensus       499 A~~~a~~iL~ID  510 (515)
T cd03338         499 ATETVRMILKID  510 (515)
T ss_pred             HHHHHHHHhccc
Confidence            999998877765

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=100.00  E-value=5.2e-48  Score=432.38  Aligned_cols=359  Identities=25%  Similarity=0.325  Sum_probs=315.2

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+..... ++.+|+...  .+.|+.++++++..-...           .+++++++.+++|++++||++++|+++++.+
T Consensus       148 ~~L~~ia~-t~l~ski~~~~~~~~s~l~~~av~~i~~~-----------~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~  215 (519)
T TIGR02341       148 DDLLNIAR-TTLSSKILSQHKDHFAQLAVDAVLRLKGS-----------GNLDAIQIIKKLGGSLNDSYLDEGFLLEKKI  215 (519)
T ss_pred             HHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHhccC-----------CChhheEEEEccCCCcccceEEeeEEEeccC
Confidence            34444443 333456553  577888888888752111           1356799999999999999999999999987


Q ss_pred             CCCCCcccccCeeEEEeecccccccccc-CCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHH
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQ-GGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELL  256 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~-~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL  256 (629)
                      .+ .||++++||+|++++++|++++++. +.         ++.+++...+..+...|++.+.+.        +..|.   
T Consensus       216 ~~-~~~~~~~n~~Ili~~~~Le~~~~~~~~~---------~~~~~~~~~~~~l~~~e~~~~~~~--------~~~I~---  274 (519)
T TIGR02341       216 GV-NQPKRIENAKILIANTPMDTDKVKVFGS---------RVRVDSTAKVAELEAAEKEKMKEK--------VEKIL---  274 (519)
T ss_pred             CC-CCceeeccccEEEEecCCCCCccccCCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH---
Confidence            65 6899999999999999999998886 44         677776677888999999888887        77776   


Q ss_pred             hhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc
Q psy14945        257 KQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY  336 (629)
Q Consensus       257 ~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~  336 (629)
                                ..++    .+    ++++++|++.+++||.+++|.+++++++.+++||+++|||+++++++.+++..+|+
T Consensus       275 ----------~~g~----~~----v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~  336 (519)
T TIGR02341       275 ----------KHNI----NC----FINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGS  336 (519)
T ss_pred             ----------HcCC----cE----EEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCcccccc
Confidence                      3343    11    45799999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhh
Q psy14945        337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK  416 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~  416 (629)
                      |+.+++..++++++++|++|+.+..|||+|||+++..++|.+|+++||+++++++++++.+|||||++|++++.+|++++
T Consensus       337 ~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~  416 (519)
T TIGR02341       337 CDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEA  416 (519)
T ss_pred             CceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999989999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHh
Q psy14945        417 NTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  496 (629)
Q Consensus       417 ~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l  496 (629)
                      ....+++++++++|++||+.||++|++|+|+|+.+++.+|+..|.. +..++|+|+.+|++.|+.+.|||||+.||++++
T Consensus       417 ~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l  495 (519)
T TIGR02341       417 QKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYN-GNHTMGLDMEEGEIADMRKLGIIESYKVKRAVV  495 (519)
T ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCCccceecCCCcccchhhccceEcHHHHHHHH
Confidence            8888899999999999999999999999999999999999988864 456789999999999999999999999999999


Q ss_pred             hhhhhcCCCCeEEe
Q psy14945        497 NSWIISGLHPRVIT  510 (629)
Q Consensus       497 ~~a~e~a~~~~iV~  510 (629)
                      +.|+++|...+.++
T Consensus       496 ~~A~e~a~~iL~id  509 (519)
T TIGR02341       496 SSAAEAAEVILRVD  509 (519)
T ss_pred             HHHHHHHHHHHhHH
Confidence            99999988876665

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=100.00  E-value=6.6e-48  Score=432.38  Aligned_cols=360  Identities=21%  Similarity=0.312  Sum_probs=319.4

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR  178 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~  178 (629)
                      .+.... .++..||...  .++|+.++++|+..- +..         ..+++.++|++++||++.||++++|++|++++.
T Consensus       150 ~l~~va-~tsl~sK~~~~~~~~l~~l~~~A~~~v-~~~---------~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~  218 (522)
T TIGR02345       150 VLEKCA-ATALNSKLIAHEKEFFSKMIVDAVLQL-DID---------DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFS  218 (522)
T ss_pred             HHHHHH-HHHhccccccchHHHHHHHHHHHHHHH-hhc---------cCChhHheEEeecCCCHHhcceecceEEecccC
Confidence            444444 3555677654  588999999999853 211         235678999999999999999999999999999


Q ss_pred             CCC---CcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHH
Q psy14945        179 HPD---MPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGEL  255 (629)
Q Consensus       179 ~~~---m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~el  255 (629)
                      +|+   ||++++||+|++++++|++++.+...         .+.+++..++..++..|++.+.+.        +..+.  
T Consensus       219 ~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~---------~i~~~~~~~~~~~~~~e~~~i~~~--------i~~i~--  279 (522)
T TIGR02345       219 YAGFEQQPKKFANPKILLLNVELELKAEKDNA---------EIRVEDVEDYQAIVDAEWAIIFRK--------LEKIV--  279 (522)
T ss_pred             ccccccCCceeccceEEEEecCcccCccccce---------EEEECCHHHHHHHHHHHHHHHHHH--------HHHHH--
Confidence            886   48999999999999999998877654         677778888889999998888888        77776  


Q ss_pred             HhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCc
Q psy14945        256 LKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLG  335 (629)
Q Consensus       256 L~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG  335 (629)
                                 ..++    .+    +++++++++.+++||.+++|.++++++..+++|++++|||++++++..+++..+|
T Consensus       280 -----------~~g~----~v----v~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG  340 (522)
T TIGR02345       280 -----------ESGA----NV----VLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLG  340 (522)
T ss_pred             -----------hcCC----cE----EEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhcc
Confidence                       3443    23    3579999999999999999999999999999999999999999999999989999


Q ss_pred             ccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        336 YAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       336 ~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      +|+.+++.+++++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++.+|||||++|++++.+|+++
T Consensus       341 ~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~  420 (522)
T TIGR02345       341 TCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREH  420 (522)
T ss_pred             CCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHH
Confidence            99999999999999999999988899999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHH
Q psy14945        416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  495 (629)
Q Consensus       416 ~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~  495 (629)
                      +....+++++++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.++++.|+.+.|||||+.||+++
T Consensus       421 ~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~-~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~  499 (522)
T TIGR02345       421 SKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAK-GGKWYGVDINTEDIGDNFENFVWEPLLVKKNA  499 (522)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCCccceeCCCCcccchhhcCceEcHHHHHHH
Confidence            87888889999999999999999999999999999999999988764 34578999999999999999999999999999


Q ss_pred             hhhhhhcCCCCeEEe
Q psy14945        496 INSWIISGLHPRVIT  510 (629)
Q Consensus       496 l~~a~e~a~~~~iV~  510 (629)
                      ++.|+++|...+.++
T Consensus       500 l~~A~e~a~~iL~id  514 (522)
T TIGR02345       500 LKAAFEAACTILSID  514 (522)
T ss_pred             HHHHHHHHHHHHhHH
Confidence            999999988776654

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0364|consensus

Probab=100.00  E-value=1.3e-49  Score=410.01  Aligned_cols=344  Identities=26%  Similarity=0.386  Sum_probs=315.2

Q ss_pred             hhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccccCeeEEEeeccc
Q psy14945        119 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISM  198 (629)
Q Consensus       119 ~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~L  198 (629)
                      -+++.+||+.|..+.| +++|+.+|        +++.|++||.++||++++|+.+++...||.|.+.++||||+|++|+|
T Consensus       171 ~~lal~avk~V~~~~g-~e~dik~y--------~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~L  241 (527)
T KOG0364|consen  171 CNLALDAVKTVGVENG-REIDIKRY--------AKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPL  241 (527)
T ss_pred             hhHHHHHHHHhhhccC-ceechhhh--------ccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCc
Confidence            4566667777766644 47888775        68899999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccc
Q psy14945        199 EYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCS  278 (629)
Q Consensus       199 e~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~  278 (629)
                      +|.|.+.+.         .+.+...++...+++.|+++....        +..|.             .++|    .+  
T Consensus       242 eykkGeSqt---------nve~~~eed~~r~Lqieee~v~~m--------c~~Ii-------------~v~p----Dl--  285 (527)
T KOG0364|consen  242 EYKKGESQT---------NVEIVKEEDFTRILQIEEEQVQAM--------CEVII-------------AVKP----DL--  285 (527)
T ss_pred             cCCCCcccc---------ceeeeechhHHHHHHhhHHHHHHH--------HHHHH-------------eecc----cE--
Confidence            999998775         677888889999999999988888        88887             5666    22  


Q ss_pred             cccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc-cceEEEEEEcCeeEEEEeecC
Q psy14945        279 TSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVFEHVLGEEKFTFVEECK  357 (629)
Q Consensus       279 ~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~-~~~v~e~~i~~~~~~~~~~~~  357 (629)
                        ++++||++|.+++||.++++++++++++.|+.|+++.+|+++++.+++++..+.|+ |+.++...+++++|.||..|.
T Consensus       286 --VitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck  363 (527)
T KOG0364|consen  286 --VITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCK  363 (527)
T ss_pred             --EEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcC
Confidence              46899999999999999999999999999999999999999999999999998997 778888899999999999999


Q ss_pred             CCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhh
Q psy14945        358 NPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLII  437 (629)
Q Consensus       358 ~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~i  437 (629)
                      +|+.|||++|||++.+++|++|.++||+.+.++.+.+|+++||||++||++++.|.+.+....+.+||.+.+.|.||+.+
T Consensus       364 ~pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEvi  443 (527)
T KOG0364|consen  364 EPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVI  443 (527)
T ss_pred             CCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceec
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             hHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        438 PKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       438 p~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |++|++|||.+++..++.++..|.. |...+|+|+.++.++|+.+.++|+|..+|.+..++|++++.+.+.++
T Consensus       444 PrtliqncGan~Ir~lTalr~kh~~-G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRId  515 (527)
T KOG0364|consen  444 PRTLIQNCGANPIRALTALRAKHKE-GQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRID  515 (527)
T ss_pred             cHHHHhhcCccHHHHHHHHHHHhcC-cceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhh
Confidence            9999999999999999999998875 66888999999999999999999999999999999999887766554

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=100.00  E-value=8.3e-48  Score=427.59  Aligned_cols=326  Identities=53%  Similarity=0.832  Sum_probs=291.4

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++..|+...  .+.|+.++++|+..-....        ...+++.++|++++||++.||++++|++|++++.+|+||+++
T Consensus       150 ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~--------~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~  221 (484)
T cd03342         150 TSLRTKLHADLADQLTEIVVDAVLAIYKPD--------EPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRV  221 (484)
T ss_pred             HHhCcccchhHHHHHHHHHHHHHHHHhhcC--------CccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccc
Confidence            343444332  4778888888887531110        134567899999999999999999999999999999999999


Q ss_pred             cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV  266 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~  266 (629)
                      +||||++++++|++++++...         .+.++                               .             
T Consensus       222 ~n~~Ill~~~~le~~~~~~~~---------~~~~~-------------------------------l-------------  248 (484)
T cd03342         222 ENAYILTCNVSLEYEKTEVNS---------GFFYS-------------------------------V-------------  248 (484)
T ss_pred             cCceEEEEeCCCCCCccccCc---------EEEEE-------------------------------E-------------
Confidence            999999999999998777554         22221                               1             


Q ss_pred             hhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEc
Q psy14945        267 NLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG  346 (629)
Q Consensus       267 ~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~  346 (629)
                                    ++++++|++.++++|.+++|.+++++++++++|||++|||+++++++++++..+|+|+.++++.++
T Consensus       249 --------------vi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig  314 (484)
T cd03342         249 --------------VINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLG  314 (484)
T ss_pred             --------------EEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEEC
Confidence                          235999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHH
Q psy14945        347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLG  426 (629)
Q Consensus       347 ~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~  426 (629)
                      ++++++|++|+++..+||+|||+++.+++|.+|+++||++++++++++|++|||||++|++++.+|++++....++++++
T Consensus       315 ~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~  394 (484)
T cd03342         315 EEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLG  394 (484)
T ss_pred             CeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            99999999999899999999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             HHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCC
Q psy14945        427 IQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHP  506 (629)
Q Consensus       427 i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~  506 (629)
                      ++.|++||+.||++|++|+|+|+.+++.+|+..|.+ ++.++|+|+.+|++.|+.+.|||||+.+|+++++.|+++|...
T Consensus       395 i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i  473 (484)
T cd03342         395 VQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAE-GGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQL  473 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-cCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988865 4567899999999999999999999999999999999999887


Q ss_pred             eEEe
Q psy14945        507 RVIT  510 (629)
Q Consensus       507 ~iV~  510 (629)
                      +.|+
T Consensus       474 L~ID  477 (484)
T cd03342         474 LLVD  477 (484)
T ss_pred             hhhh
Confidence            7765

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=100.00  E-value=5.9e-47  Score=424.98  Aligned_cols=354  Identities=23%  Similarity=0.351  Sum_probs=310.7

Q ss_pred             hhhcccccc-hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccccc
Q psy14945        109 TCNISMEYE-KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVK  187 (629)
Q Consensus       109 ~~~~s~~~~-~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~  187 (629)
                      ++.+||... .++|+.++++|+..- +..      .....+++.++|++++|++++||++++|++|+++..  .||+.++
T Consensus       157 tsl~sK~~~~~~~ls~l~~~Ai~~v-~~~------~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~  227 (531)
T TIGR02346       157 ASISSKQYGNEDFLAQLVAKACSTV-MPK------NPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVK  227 (531)
T ss_pred             HHhccccCchHHHHHHHHHHHHHHH-hhc------CCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceecc
Confidence            555666554 788999999999853 110      001235778999999999999999999999999943  5799999


Q ss_pred             CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHh
Q psy14945        188 NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVN  267 (629)
Q Consensus       188 n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~  267 (629)
                      ||||+++++++++++++.+.         .+.+++...+..+...|.+++...        +..+.             .
T Consensus       228 n~kI~l~~~~l~~~~~~~~~---------~~~~~~~~~l~~~~~~e~~~i~~~--------l~~i~-------------~  277 (531)
T TIGR02346       228 NAKVAVFSCPLDTATTETKG---------TVLIHNAEELLNYSKGEENQIEAY--------IKAIA-------------D  277 (531)
T ss_pred             CCCEEEEecCcCCCcccCce---------EEEECCHHHHHHHHHHHHHHHHHH--------HHHHH-------------H
Confidence            99999999999999888665         677888788888888887777776        66665             2


Q ss_pred             hccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcC
Q psy14945        268 LKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE  347 (629)
Q Consensus       268 ~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~  347 (629)
                      .+.    .+    ++++++++|.+++||.+++|.++++++..+++||+++|||++++++..+++..+|+|+.+++.++++
T Consensus       278 ~g~----~l----vi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~  349 (531)
T TIGR02346       278 SGV----NV----IVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG  349 (531)
T ss_pred             cCC----cE----EEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC
Confidence            332    11    4579999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             eeEEEEeecC-CCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHH
Q psy14945        348 EKFTFVEECK-NPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLG  426 (629)
Q Consensus       348 ~~~~~~~~~~-~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~  426 (629)
                      +++.+|.+|. .+..+||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++..+.++++++
T Consensus       350 ~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~  429 (531)
T TIGR02346       350 QKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYA  429 (531)
T ss_pred             EEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHH
Confidence            9999998777 578999999999999999999999999999999999999999999999999999999887788899999


Q ss_pred             HHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCC--CCCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        427 IQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGE--VLNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       427 i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~--i~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      +++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.++.  +.|+.+.|||||+.||+++|+.|+++|.
T Consensus       430 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~  508 (531)
T TIGR02346       430 IKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKK-GNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAV  508 (531)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988754 3457899999998  5999999999999999999999999998


Q ss_pred             CCeEEe
Q psy14945        505 HPRVIT  510 (629)
Q Consensus       505 ~~~iV~  510 (629)
                      ..+.++
T Consensus       509 ~iL~id  514 (531)
T TIGR02346       509 TVLRVD  514 (531)
T ss_pred             HHhhhh
Confidence            877765

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0363|consensus

Probab=100.00  E-value=1.3e-47  Score=386.92  Aligned_cols=371  Identities=24%  Similarity=0.318  Sum_probs=338.7

Q ss_pred             cccCCCCCCchhhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceE
Q psy14945         89 LNHGARHPDMPKSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCII  166 (629)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~  166 (629)
                      .+|+-+...|+.++.+..+.|. +|+...  ++|||.++|++|.+..|..           ++..|+|+|..||++.||+
T Consensus       141 ~dns~~~~kfr~DLl~iarTTL-~SKiLsq~kehFaelavdAV~rLkGs~-----------nL~~IqIIK~~Gg~l~dSf  208 (527)
T KOG0363|consen  141 IDNSSDKEKFREDLLKIARTTL-SSKILSQDKEHFAELAVDAVLRLKGST-----------NLEAIQIIKKLGGKLEDSF  208 (527)
T ss_pred             hhccCchHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHhcCCC-----------CccceeeehhcCCcccccc
Confidence            6777788899999999997665 888764  8999999999999887764           5788999999999999999


Q ss_pred             EEEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCch
Q psy14945        167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTT  246 (629)
Q Consensus       167 li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt  246 (629)
                      |-+|+++++.+. -+.|++++||||++-|.+++.+|.+.++.        .+.+.+....+.+-..|.+.+.+.      
T Consensus       209 LDeGFlL~K~ig-v~qpkriena~iLIANT~mDtDKvKvfGa--------rvrVds~~klaelE~AEkeKmK~K------  273 (527)
T KOG0363|consen  209 LDEGFLLDKKIG-VNQPKRIENAKILIANTPMDTDKVKVFGA--------RVRVDSTAKLAELEKAEKEKMKEK------  273 (527)
T ss_pred             ccccceeccccC-CCCcccccccceEEecCCCcccceeeecc--------eEeecchhHHHHHHHHHHHHHHHH------
Confidence            999999998753 36799999999999999999999999872        788888888999999999999999      


Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccc
Q psy14945        247 STVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV  326 (629)
Q Consensus       247 ~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~  326 (629)
                        |.+|.             ..+.     .|.   +...-|.++-.++|+.++|+++...+..-++|++.+|||.+.+++
T Consensus       274 --V~kI~-------------~hgi-----N~F---iNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STF  330 (527)
T KOG0363|consen  274 --VEKIL-------------KHGI-----NVF---INRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTF  330 (527)
T ss_pred             --HHHHH-------------hcCC-----cEE---eehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeecc
Confidence              88887             3332     232   345566788899999999999999998889999999999999999


Q ss_pred             cccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHH
Q psy14945        327 EGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV  406 (629)
Q Consensus       327 ~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El  406 (629)
                      +..+...+|+|+.+++..+|+++++.|++|.....|||+|||+++.+++|.+|+++||++++....++++++.||||.||
T Consensus       331 d~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm  410 (527)
T KOG0363|consen  331 DNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEM  410 (527)
T ss_pred             CCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCccccc
Q psy14945        407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIY  486 (629)
Q Consensus       407 ~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~  486 (629)
                      ..+..+.+++...++++...+++|++||..+|.+|++|+|||+.+++.+|+..|.. |..+.|+|.++|.+.||.+.||.
T Consensus       411 ~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~-g~~t~Gld~~~G~i~dm~~~Gi~  489 (527)
T KOG0363|consen  411 LMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYN-GRTTMGLDVRNGEIGDMRELGIV  489 (527)
T ss_pred             HHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhc-CCcccccccccCchhhHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999986 77899999999999999999999


Q ss_pred             chhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        487 DNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       487 D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |++.+|+..+.+|.|+|.....|+
T Consensus       490 es~~vK~~vv~sasEaae~ilrvD  513 (527)
T KOG0363|consen  490 ESLKVKQAVVSSASEAAEMILRVD  513 (527)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhhh
Confidence            999999999998888877766655

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=100.00  E-value=1.6e-45  Score=409.07  Aligned_cols=325  Identities=27%  Similarity=0.424  Sum_probs=283.9

Q ss_pred             HHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCcccccccc-ceeEEEecCCCccceEEEEeEEEeccCC
Q psy14945        102 VKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHIL-TCNISMEYEKSDVCIILVKGVVLNHGAR  178 (629)
Q Consensus       102 ~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~-~i~i~~i~Ggs~~dS~li~Gvv~~~~~~  178 (629)
                      +.... .++..|+..+  .+.++.++++|+.....+..    ......++. +++|++++||++.||++++|++|++++.
T Consensus       147 l~~i~-~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~----~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~  221 (480)
T cd03337         147 MLKII-KSCIGTKFVSRWSDLMCNLALDAVKTVAVEEN----GRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVT  221 (480)
T ss_pred             HHHHH-HHHhccCcchhHHHHHHHHHHHHHHhhccccC----CCCCcCChhhceEEEEecCCCHHhcccccceEEeccCC
Confidence            44443 3566777664  46789999999875321100    000011222 4899999999999999999999999999


Q ss_pred             CCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhh
Q psy14945        179 HPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ  258 (629)
Q Consensus       179 ~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~  258 (629)
                      |+.||++++||||++++|+|++                                                    .     
T Consensus       222 ~~~m~~~~~n~kIlll~~~Le~----------------------------------------------------l-----  244 (480)
T cd03337         222 HPKMRRRIENPRIVLLDCPLEY----------------------------------------------------L-----  244 (480)
T ss_pred             CCCCCcEecCCCEEEEecCcce----------------------------------------------------E-----
Confidence            9999999999999999999852                                                    1     


Q ss_pred             hHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc-c
Q psy14945        259 ADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-A  337 (629)
Q Consensus       259 Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~-~  337 (629)
                                      +      +++++|++.+++||.+++|.+++++++++++|||++|||+++++++.++++.+|+ |
T Consensus       245 ----------------v------i~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~  302 (480)
T cd03337         245 ----------------V------ITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGA  302 (480)
T ss_pred             ----------------E------EeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcc
Confidence                            1      3599999999999999999999999999999999999999999999999999999 6


Q ss_pred             ceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        338 GSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      +.+++.+++++++++|++|+++..|||+|||+++..++|++|+++||+++++++++++.+|||||++|++++.+|++++.
T Consensus       303 ~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~  382 (480)
T cd03337         303 GLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAK  382 (480)
T ss_pred             cEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhh
Confidence            67777788889999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhh
Q psy14945        418 TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  497 (629)
Q Consensus       418 ~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~  497 (629)
                      .+.+.+++++++|++||+.||++|++|+|+|+.+++.+|+..|...++.++|+|+.+|.+.|+.+.|||||+.+|+++++
T Consensus       383 ~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~  462 (480)
T cd03337         383 SIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYK  462 (480)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHH
Confidence            88889999999999999999999999999999999999998886511468999999999999999999999999999999


Q ss_pred             hhhhcCCCCeEEe
Q psy14945        498 SWIISGLHPRVIT  510 (629)
Q Consensus       498 ~a~e~a~~~~iV~  510 (629)
                      .|+++|...+.++
T Consensus       463 ~A~e~a~~iL~id  475 (480)
T cd03337         463 TAIEAACMLLRID  475 (480)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999988766554

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-44  Score=400.27  Aligned_cols=397  Identities=25%  Similarity=0.320  Sum_probs=334.6

Q ss_pred             hhhhHHHhcCchhhh-----------hhhhcccccccccCCC----CCCchhhHHHHhHhhhhcccccc-----------
Q psy14945         64 HAQVREERAHPDMQH-----------QHGIREEGVVLNHGAR----HPDMPKSVKNAHILTCNISMEYE-----------  117 (629)
Q Consensus        64 ~~~~~~e~~~~~~~~-----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~-----------  117 (629)
                      .++.++-.+.+++-+           +.+++++...+..+..    .++++.++..|.+.....+++..           
T Consensus        67 akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t  146 (524)
T COG0459          67 AKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAIT  146 (524)
T ss_pred             hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhh
Confidence            466666666777665           7778888877766663    45666676666644443333221           


Q ss_pred             ---------hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC-CCCCCc-ccc
Q psy14945        118 ---------KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA-RHPDMP-KSV  186 (629)
Q Consensus       118 ---------~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~-~~~~m~-~~i  186 (629)
                               .++|+.++++|+..- +...         .+++.+.+++..||+..||.+++|++|++++ .|+.|| +++
T Consensus       147 ~v~sk~~~~~~~i~~lv~~Av~~v-~~~~---------~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~  216 (524)
T COG0459         147 SVASKSANSDEEIGELVVEAVEKV-GKEQ---------SDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRL  216 (524)
T ss_pred             eeeeeeccChHHHHHHHHHHHHHh-cccc---------cccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCcccc
Confidence                     257888888888753 2210         1567899999999999999999999999955 556799 899


Q ss_pred             cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHH-HHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARAS-TAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~-~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      +||+|++++++|++.+++...         .+.++..+|+..+..+|+ +.+...        +..+.            
T Consensus       217 e~~~Ili~d~~l~~~k~~l~~---------e~~i~~~~~l~~i~e~ee~e~l~~~--------v~ni~------------  267 (524)
T COG0459         217 ENPKILLLDKKLEIKKPELPL---------EIVISSGKPLLIIAEDEEGEALATL--------VVNIL------------  267 (524)
T ss_pred             ccceEEEEccccccccccCcc---------eeEecCccHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            999999999999998887763         688899999999999988 776666        66655            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhH-HHHHHHhCCcccccccccCcCCCcc--cceEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNM-ERLSLACGGTAMNSVEGLEPAHLGY--AGSVFE  342 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl-~rIak~tGg~i~~s~~~l~~~~lG~--~~~v~e  342 (629)
                       ..+.    .+|   +++++|++|.+++||.+.+|.+.+++.+.++ +++++++||++++...+.+...+|.  |..+++
T Consensus       268 -~~g~----~~v---vv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~  339 (524)
T COG0459         268 -RGGA----NVV---VVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEE  339 (524)
T ss_pred             -hcCC----CEE---EEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEE
Confidence             2222    434   4689999999999999999999999999999 8999999999999999999999999  999999


Q ss_pred             EEEcCeeEEEEeecCC--CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcC
Q psy14945        343 HVLGEEKFTFVEECKN--PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVK  420 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~~--~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~  420 (629)
                      ..+++..+.+|.+|..  +..|||++||+++..++|.+++++||+++++++++++.+|||||++|+.++..|++++....
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~  419 (524)
T COG0459         340 TKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVE  419 (524)
T ss_pred             eeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCC
Confidence            9899999999998875  78999999999999999999999999999999999999999999999999999998854444


Q ss_pred             c-chHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCC-CCCCcccccchhhHHHHHhhh
Q psy14945        421 G-KSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEV-LNPTSAGIYDNLTVKRQIINS  498 (629)
Q Consensus       421 ~-~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i-~d~~e~~I~D~~~Vk~~~l~~  498 (629)
                      + .+|+++++|++||+.||++|++|+|+|+.+++.+|++.|.   ...+|+|+.++.+ .||.+.||+||+.|++++++.
T Consensus       420 g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~  496 (524)
T COG0459         420 GGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN  496 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceeccCCccccchHhccCcChHHHHHHHHHH
Confidence            4 8999999999999999999999999999999999998774   2348999999998 779999999999999999999


Q ss_pred             hhhcCCCCeEEe
Q psy14945        499 WIISGLHPRVIT  510 (629)
Q Consensus       499 a~e~a~~~~iV~  510 (629)
                      |+++|...+.+.
T Consensus       497 A~e~a~llL~~d  508 (524)
T COG0459         497 AAEAAGLLLTID  508 (524)
T ss_pred             HHHHHHHHHHHH
Confidence            998887665443

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=100.00  E-value=6.6e-44  Score=395.62  Aligned_cols=315  Identities=35%  Similarity=0.529  Sum_probs=284.3

Q ss_pred             hhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccc
Q psy14945        108 LTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKS  185 (629)
Q Consensus       108 ~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~  185 (629)
                      .++..||...  .++++.++++++... +...       ...+.+.++|++++||++.||++++|++|++++.+|+||+.
T Consensus       144 ~tsl~sK~~~~~~~~l~~l~~~Ai~~v-~~~~-------~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~  215 (464)
T cd00309         144 TTSLNSKLVSGGDDFLGELVVDAVLKV-GKEN-------GDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKR  215 (464)
T ss_pred             HhcccccccccchHHHHHHHHHHHHHh-cccc-------CccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCcee
Confidence            3555666543  567899999998753 2110       03456889999999999999999999999999999999999


Q ss_pred             ccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        186 VKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       186 i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      ++||||++++++|++                                                    .            
T Consensus       216 ~~n~~Ili~~~~Le~----------------------------------------------------l------------  231 (464)
T cd00309         216 LENAKILLLDCKLEY----------------------------------------------------V------------  231 (464)
T ss_pred             ecCceEEEEecCcce----------------------------------------------------E------------
Confidence            999999999999952                                                    1            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL  345 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i  345 (629)
                                     ++++++|++.++++|.+++|.+++++++++++||+++|||+++++++.++...+|+|+.+++.++
T Consensus       232 ---------------Ii~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~  296 (464)
T cd00309         232 ---------------VIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKI  296 (464)
T ss_pred             ---------------EecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEE
Confidence                           13588999999999999999999999999999999999999999999999899999999999999


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHH
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRL  425 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~  425 (629)
                      +++++++|.+|..+..|||+|||+++..++|.+++++||++++++++++|.+|||||++|++++.+|++++.+..+.+++
T Consensus       297 g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~  376 (464)
T cd00309         297 GDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQL  376 (464)
T ss_pred             cCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHH
Confidence            99999999988888999999999999999999999999999999999999999999999999999999998888889999


Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        426 GIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       426 ~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++++|++||+.||++|++|+|+|+.+++.+|+..|.+ +..+.|+|+.++++.|+.+.|||||+.||+++++.|+++|..
T Consensus       377 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~-~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~  455 (464)
T cd00309         377 GIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAE-GGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASL  455 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-cCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988765 445789999999999999999999999999999999998877


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      .+.++
T Consensus       456 iL~id  460 (464)
T cd00309         456 ILTID  460 (464)
T ss_pred             HHhHH
Confidence            65543

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=100.00  E-value=2.2e-43  Score=393.49  Aligned_cols=358  Identities=29%  Similarity=0.464  Sum_probs=317.6

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.+.. .+...++...  .++++.++++++ .....       .   .+++.+++++++|++.+||++++|++|++++
T Consensus       117 ~~l~~i~-~t~l~~k~~~~~~~~l~~li~~a~-~~~~~-------~---~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~  184 (485)
T PF00118_consen  117 ESLLNIA-KTSLNSKISSSWSDHLSKLIVDAI-KSIKS-------N---FDLDNIKIIKIPGGSISDSELINGIVLDKGF  184 (485)
T ss_dssp             HHHHHHH-HHHHTTSCGGGCHHHHHHHHHHHH-HHHTT-------T---HHGGGEEEEEEESSSSGGEEEESEEEESSSB
T ss_pred             hhhhhhh-cccccccccccchhhhhhhHHHHH-Hhhcc-------c---ccccchhhhhhccccccccccccceeeeccc
Confidence            4454444 3444444332  488999999999 43211       1   4677799999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .+++||++++||||++++++|+++++ .+.         ++.+++.+....+...|.+++...        +..+.    
T Consensus       185 ~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~---------~~~~~~~~~~~~~~~~e~~~l~~~--------~~~i~----  242 (485)
T PF00118_consen  185 SSPNMPKKIENPKILLLNCPLEYSKS-FKS---------EIRITSPEQLDELSKQEKKYLKKI--------LEKII----  242 (485)
T ss_dssp             SSTTSBSEEESEEEEEESSEBSSCCH-STE---------EEEESSTHHHHHHHHHHHHHHHHH--------HHHHH----
T ss_pred             cccccccccccceEEeeecccccccc-ccc---------ccchhhHHHHHHHHhhhhhhhccc--------cceEe----
Confidence            99999999999999999999999877 654         788999999999999999888887        77776    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCccc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA  337 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~  337 (629)
                               ..++    .+    +++++++++.++++|.+++|.++++++..++++|+++|||++++++.++++..+|+|
T Consensus       243 ---------~~~~----~l----Ii~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~  305 (485)
T PF00118_consen  243 ---------NLGV----NL----IISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFC  305 (485)
T ss_dssp             ---------TTTS----SE----EEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEE
T ss_pred             ---------eecc----ce----eeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhh
Confidence                     3333    22    567999999999999999999999999999999999999999999999988889999


Q ss_pred             ceEEEEEEcCeeEEEEe--ecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        338 GSVFEHVLGEEKFTFVE--ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~--~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      +.+++..++++++++|.  +|.....+|++|||+++..++|.+++++||+++++.+++++.+|||||++|++++.+|+++
T Consensus       306 ~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~  385 (485)
T PF00118_consen  306 KSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKY  385 (485)
T ss_dssp             EEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHH
T ss_pred             hhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHh
Confidence            99999999999999998  5788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHH
Q psy14945        416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  495 (629)
Q Consensus       416 ~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~  495 (629)
                      .....+..++++++|++||+.||++|++|+|+|+.+++++|+..|..  +.++|+|+.++++.|+.+.|||||+.+|+++
T Consensus       386 ~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~--~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~  463 (485)
T PF00118_consen  386 AKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNN--GNNYGIDLDTGEIVDMKEAGILDPLLVKISA  463 (485)
T ss_dssp             HHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHS--TTTEEEETTTTEEEETTTTTCEEEHHHHHHH
T ss_pred             hhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcc--ccccCcCccCCceeccccccchhhHHHHHHH
Confidence            98888899999999999999999999999999999999999987753  4589999999999999999999999999999


Q ss_pred             hhhhhhcCCCCeEEe
Q psy14945        496 INSWIISGLHPRVIT  510 (629)
Q Consensus       496 l~~a~e~a~~~~iV~  510 (629)
                      ++.|+++|...+.++
T Consensus       464 l~~A~~~a~~iL~id  478 (485)
T PF00118_consen  464 LKSAVEIASLILRID  478 (485)
T ss_dssp             HHHHHHHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887665443

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>KOG0358|consensus

Probab=100.00  E-value=1.7e-44  Score=365.99  Aligned_cols=362  Identities=21%  Similarity=0.252  Sum_probs=317.7

Q ss_pred             hhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccc
Q psy14945        108 LTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKS  185 (629)
Q Consensus       108 ~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~  185 (629)
                      .|+..|+...  .+-++..||++|..-      --|....+.++.+++|+|-.||+++|+++++|++|+.......-|++
T Consensus       162 tTsLnSKvvSq~s~llapmAVdAV~kv------~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptr  235 (534)
T KOG0358|consen  162 TTSLNSKVVSQYSSLLAPMAVDAVLKV------IDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTR  235 (534)
T ss_pred             HhHhhHHHHHhhccccchHHHHHHHhc------cCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcch
Confidence            3555666654  345677778888742      12445567889999999999999999999999999998877678999


Q ss_pred             ccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        186 VKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       186 i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      ++++||.+++|+|+++|+++..         ++.++++.++++++.+|++|+-+.        |.+|..           
T Consensus       236 iekAkIglIQF~iS~PKtdmen---------~iiv~DyaqMdrilkeER~YiL~m--------cKkIKk-----------  287 (534)
T KOG0358|consen  236 IEKAKIGLIQFQISPPKTDMEN---------QIIVNDYAQMDRILKEERQYILNM--------CKKIKK-----------  287 (534)
T ss_pred             hhhceeeEEEEEecCCCCCccc---------ceEecCHHHHHHHHHHHHHHHHHH--------HHHHHh-----------
Confidence            9999999999999999999887         799999999999999999999999        888872           


Q ss_pred             HhhccccccCc-cccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEE-
Q psy14945        266 VNLKMHKFAPD-CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH-  343 (629)
Q Consensus       266 ~~~~~~~~l~v-~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~-  343 (629)
                        .+.    .+ ..+.++-...++|.++|||++.+|+++..+.+.|++.+|+.+|++++.+++.++.+.+|++..++|. 
T Consensus       288 --~gc----nvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~  361 (534)
T KOG0358|consen  288 --AGC----NVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETD  361 (534)
T ss_pred             --cCC----eEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcc
Confidence              221    11 0011222344589999999999999999999999999999999999999999999999999999987 


Q ss_pred             EEcCeeEEEEeecCC-CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcc
Q psy14945        344 VLGEEKFTFVEECKN-PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGK  422 (629)
Q Consensus       344 ~i~~~~~~~~~~~~~-~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~  422 (629)
                      .-|+.++.-+.++.+ ...++|++||+++..++|.+|+++||++++|++.+.+++++|||+.|+.++..|.+++....|.
T Consensus       362 ~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~  441 (534)
T KOG0358|consen  362 SSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGV  441 (534)
T ss_pred             cCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccc
Confidence            346669998888877 5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhc
Q psy14945        423 SRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIIS  502 (629)
Q Consensus       423 ~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~  502 (629)
                      +.+++++||+|||.||.+|++|+|++++.++++||+.|.+ |..+.|++.+.|.+.|+++..+..|+.|-.++++.|+|+
T Consensus       442 ~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haq-ge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Et  520 (534)
T KOG0358|consen  442 EAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQ-GEKNAGINVRKGGITNILEENVVQPLLVSISAITLATET  520 (534)
T ss_pred             hhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhc-CCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999999986 778999999999999999999999999999999999888


Q ss_pred             CCCCeEEe
Q psy14945        503 GLHPRVIT  510 (629)
Q Consensus       503 a~~~~iV~  510 (629)
                      ....+-++
T Consensus       521 vr~ILKID  528 (534)
T KOG0358|consen  521 VRSILKID  528 (534)
T ss_pred             HHHHhhhh
Confidence            77765544

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=100.00  E-value=2.7e-43  Score=390.64  Aligned_cols=316  Identities=24%  Similarity=0.383  Sum_probs=277.7

Q ss_pred             hhhcccccc-hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccccc
Q psy14945        109 TCNISMEYE-KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVK  187 (629)
Q Consensus       109 ~~~~s~~~~-~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~  187 (629)
                      +...|+... .++|+.++++++... +..      ..+..+++.++|++++||++.||++++|++|++...  .++++++
T Consensus       147 t~l~sk~~~~~~~l~~l~~~a~~~~-~~~------~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~  217 (472)
T cd03341         147 TAIASKQYGNEDFLSPLVAEACISV-LPE------NIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVK  217 (472)
T ss_pred             HHhcccccchHHHHHHHHHHHHHHH-hhc------cCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceecc
Confidence            333444433 677888888888753 110      011345778999999999999999999999987653  4568899


Q ss_pred             CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHh
Q psy14945        188 NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVN  267 (629)
Q Consensus       188 n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~  267 (629)
                      ||||++++++|++                                                    +              
T Consensus       218 n~~Ili~~~~Le~----------------------------------------------------g--------------  231 (472)
T cd03341         218 KAKVAVFSCPFDI----------------------------------------------------G--------------  231 (472)
T ss_pred             CCcEEEEeccccC----------------------------------------------------C--------------
Confidence            9999999999953                                                    1              


Q ss_pred             hccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcC
Q psy14945        268 LKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE  347 (629)
Q Consensus       268 ~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~  347 (629)
                        +    .+    ++++++|++.+++||.+++|.+++++++.+++||+++|||+++++++.+++..+|+|+.+++.++++
T Consensus       232 --~----~l----vi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~  301 (472)
T cd03341         232 --V----NV----IVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGD  301 (472)
T ss_pred             --C----eE----EEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECC
Confidence              0    01    2469999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             eeEEEEeecCC-CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHH
Q psy14945        348 EKFTFVEECKN-PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLG  426 (629)
Q Consensus       348 ~~~~~~~~~~~-~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~  426 (629)
                      +++++|.+|.. +..|||+|||+++..++|.+|+++||++++++++++|++|||||++|++++.+|++++....++++++
T Consensus       302 ~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~  381 (472)
T cd03341         302 TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYA  381 (472)
T ss_pred             eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHH
Confidence            99999998877 78999999999999999999999999999999999999999999999999999999877778889999


Q ss_pred             HHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccC--CCCCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        427 IQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       427 i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~--~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      +++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|  ++.|+.+.|||||+.||+++++.|+++|.
T Consensus       382 ~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~  460 (472)
T cd03341         382 IKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQK-GNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAV  460 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887754 455799999999  99999999999999999999999999988


Q ss_pred             CCeEEe
Q psy14945        505 HPRVIT  510 (629)
Q Consensus       505 ~~~iV~  510 (629)
                      ..+.++
T Consensus       461 ~iL~id  466 (472)
T cd03341         461 TVLRVD  466 (472)
T ss_pred             HHhhhc
Confidence            776654

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>KOG0360|consensus

Probab=100.00  E-value=1.1e-43  Score=369.28  Aligned_cols=365  Identities=26%  Similarity=0.349  Sum_probs=321.0

Q ss_pred             hhhHHHHhHhhhhcccccc--hhhHHHHHHHHHhh---hcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEE
Q psy14945         99 PKSVKNAHILTCNISMEYE--KSDVCIILVKGVVL---NHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVL  173 (629)
Q Consensus        99 ~~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~---~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~  173 (629)
                      ++++.++++ +..+|+...  .+.|+..+++++..   ..-+.+   |+|    +++.++|.|.+|+|..||.+++|+.+
T Consensus       148 ~~~Lin~~k-tsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge---~~y----pi~~vnILkahG~s~~eS~l~~GyaL  219 (545)
T KOG0360|consen  148 TQILINLAK-TSMSSKIIGMDSDFFTEMVVDALLAVKILDINGE---PHY----PINSVNILKAHGKSQIESMLLPGYAL  219 (545)
T ss_pred             hHHHHHHHH-hhhcceecccchHHHHHHHHHHHHHHhhcccCCc---eec----cccceeEEecCCccchhheeecceee
Confidence            456777774 666888886  45677777766664   221222   333    47889999999999999999999999


Q ss_pred             eccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHH
Q psy14945        174 NHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIG  253 (629)
Q Consensus       174 ~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~  253 (629)
                      +....+..||++++|+||++++|.|...+.+++.         ++.+.++..+.++-+.|.....+.        +.+|.
T Consensus       220 nc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv---------~vvv~dp~kle~ir~~e~~itkeR--------i~kIl  282 (545)
T KOG0360|consen  220 NCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGV---------QVVVDDPEKLEQIRQREQDITKER--------IKKIL  282 (545)
T ss_pred             eccHhhhccccccccceeeeEecccccccccccc---------eEEEcChHHHHHHHHHHhHhHHHH--------HHHHH
Confidence            9999999999999999999999999998888776         788888888888888888777777        77776


Q ss_pred             HHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccc------
Q psy14945        254 ELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVE------  327 (629)
Q Consensus       254 elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~------  327 (629)
                                   .-+.    .+    +|+++||+|.+++||.++++++++|+.+.||++|+|+||+++++|+-      
T Consensus       283 -------------~~ga----nv----VLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~gee  341 (545)
T KOG0360|consen  283 -------------ATGA----NV----VLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEE  341 (545)
T ss_pred             -------------hcCC----cE----EEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhcccccc
Confidence                         3332    22    67899999999999999999999999999999999999999999985      


Q ss_pred             ccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHH
Q psy14945        328 GLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVA  407 (629)
Q Consensus       328 ~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~  407 (629)
                      .+.+..+|+++.+.+.+|+++.++++.+.+. ..++|+|||++++.++|++|+++|++++++..++++++||||||+|.+
T Consensus       342 tf~~~~lG~a~evvqeri~dde~ilikg~ka-~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a  420 (545)
T KOG0360|consen  342 TFEPASLGSADEVVQERIGDDELILIKGTKA-TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA  420 (545)
T ss_pred             ccChhhccchhHHHHHhcccceeEEeccCcc-ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence            4778889999999999999999999976444 489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCC-------CCceEEEEeccCCCCCC
Q psy14945        408 AWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA-------PGVAVGVDVNSGEVLNP  480 (629)
Q Consensus       408 l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~-------~~~~~Gid~~t~~i~d~  480 (629)
                      |+-||++|+.+..++++..+-.|++||.+||++|+-|++.|+.+.+++++..|..+       ..+|+|+++.+|.+.|.
T Consensus       421 Ls~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn  500 (545)
T KOG0360|consen  421 LSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDN  500 (545)
T ss_pred             HHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecc
Confidence            99999999999999999999999999999999999999999999999999887641       12589999999999999


Q ss_pred             CcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        481 TSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       481 ~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .+.|+.+|-.+|...++.|+|++...+.++
T Consensus       501 ~~~g~~ep~~~kvksLk~ateaaitiLriD  530 (545)
T KOG0360|consen  501 KSAGSFEPPIVKVKSLKFATEAAITILRID  530 (545)
T ss_pred             eeeeeeccceeehhhhHHHHHhhhhhcchh
Confidence            999999999999999999999999888876

>KOG0361|consensus

Probab=100.00  E-value=1.7e-41  Score=344.76  Aligned_cols=365  Identities=19%  Similarity=0.265  Sum_probs=272.7

Q ss_pred             eccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH------------------------hhcc------
Q psy14945        221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV------------------------NLKM------  270 (629)
Q Consensus       221 ~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~------------------------~~~~------  270 (629)
                      .+.||+++.++..++.||.++|||||||+.+++|+|+++..||+++                        ....      
T Consensus        70 divhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~  149 (543)
T KOG0361|consen   70 DIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKT  149 (543)
T ss_pred             hhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchh
Confidence            3579999999999999999999999999999999999999999881                        0000      


Q ss_pred             --ccccCccccccccccCCCHHHHHHHHHhCcEEEeccc---hhhHHHHHHHhCCccccccc--c--cCcCCCcccceEE
Q psy14945        271 --HKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK---RRNMERLSLACGGTAMNSVE--G--LEPAHLGYAGSVF  341 (629)
Q Consensus       271 --~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~---~~dl~rIak~tGg~i~~s~~--~--l~~~~lG~~~~v~  341 (629)
                        ++-+..|+.+.+++|.|+. -.+||+++.++++..++   ...++.|-|++||.+.+|+-  .  ++ ..+.+++ ++
T Consensus       150 ~~r~lL~KcA~T~lsSKlI~~-ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFk-KtFsYAG-fE  226 (543)
T KOG0361|consen  150 ELRELLEKCAATALSSKLIRQ-EKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFK-KTFSYAG-FE  226 (543)
T ss_pred             hHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeee-ehccccc-hh
Confidence              2224458888999998854 67899999999987766   34789999999999999962  1  22 2334444 22


Q ss_pred             EE--EEcCeeEEEEe---ecC-CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH
Q psy14945        342 EH--VLGEEKFTFVE---ECK-NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ  413 (629)
Q Consensus       342 e~--~i~~~~~~~~~---~~~-~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~  413 (629)
                      ++  .+.|.++..+.   +.+ +...+.|.+.+..++  ..+.-=++|.+.+..+.....+ .|+.-=-..+++- +|+.
T Consensus       227 qqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAn-VVLSkLpIGD~AT-QyFA  304 (543)
T KOG0361|consen  227 QQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGAN-VVLSKLPIGDLAT-QYFA  304 (543)
T ss_pred             hCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCe-EEEecccchHHHH-HHhh
Confidence            22  35678887775   111 335678888887766  3333335666665555322211 1222223345544 3554


Q ss_pred             hhhhhcC-cchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCC------------------C---CceEEE-
Q psy14945        414 NYKNTVK-GKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA------------------P---GVAVGV-  470 (629)
Q Consensus       414 ~~~~~i~-~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~------------------~---~~~~Gi-  470 (629)
                      +...-.. ...+.++.++.           ..||.+...+.+++...+.+.                  |   .+++.+ 
T Consensus       305 drdiFCAGRV~~eDl~Rv~-----------~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTli  373 (543)
T KOG0361|consen  305 DRDIFCAGRVPEEDLNRVM-----------QACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLI  373 (543)
T ss_pred             ccCceecCcCCHHHHHHHH-----------HhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEE
Confidence            4332111 12344444443           447777776666665555541                  1   123444 


Q ss_pred             -EeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        471 -DVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       471 -d~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                       ++-.++++.+.+|+++|+.++++.+++       +..+|+|||++| |++|+.|++++.++.+++|+.+.         
T Consensus       374 LRGgaeqfieE~eRSlHDAImIVrralk-------n~~vVaGGGaiE-MElSk~lRd~S~ti~gK~q~~i~---------  436 (543)
T KOG0361|consen  374 LRGGAEQFIEETERSLHDAIMIVRRALK-------NDSVVAGGGAIE-MELSKYLRDYSRTIAGKQQLFIN---------  436 (543)
T ss_pred             EeccHHHHHHHHhhhhhhHHHHHHHHhc-------cCcEeeCCceee-ehHHHHHHHhhcccCcHHHHHHH---------
Confidence             444568999999999999999999998       999999999999 99999999999999999999988         


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                               +|++|||+|||+||+|||+|+++++++||..|++ |..|||||++++.+.|+.+.+||||..||++|+++
T Consensus       437 ---------A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~-G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~a  505 (543)
T KOG0361|consen  437 ---------AYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ-GEKWYGVDINTEGIADNFEKFVWEPSIVKINAITA  505 (543)
T ss_pred             ---------HHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc-CCceeeeeecccchhhHHHhhccChHHHHHHHHHH
Confidence                     6888999999999999999999999999999998 88999999999999999999999999999999974

>KOG0362|consensus

Probab=100.00  E-value=1.5e-41  Score=355.82  Aligned_cols=361  Identities=19%  Similarity=0.247  Sum_probs=288.8

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH------hhcc----ccc------cCcc--------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV------NLKM----HKF------APDC--------  277 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~------~~~~----~~~------l~v~--------  277 (629)
                      .+||+++++++..+.|++++|||||+||.+.+|||.+|+.||+++      .-++    .+.      +.++        
T Consensus        77 v~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~  156 (537)
T KOG0362|consen   77 VEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDK  156 (537)
T ss_pred             ccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccCh
Confidence            579999999999999999999999999999999999999999882      0000    000      0000        


Q ss_pred             ---cccccc--ccCCCHHHHHHHHHhCcEEEeccchh--hHHHHHHHhCCccccccc----ccCcCCCcccceEEEEEEc
Q psy14945        278 ---STSDRY--RTGIDPQSLDLFAREGIIALRRAKRR--NMERLSLACGGTAMNSVE----GLEPAHLGYAGSVFEHVLG  346 (629)
Q Consensus       278 ---~~~~l~--~k~i~~~~~~~la~~~I~vv~~v~~~--dl~rIak~tGg~i~~s~~----~l~~~~lG~~~~v~e~~i~  346 (629)
                         ..+++.  +++-.|+..++.+++|+.+.+. ..+  |++|+|+++|+++.+|..    .+++...|.+.+..     
T Consensus       157 ~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~-~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak-----  230 (537)
T KOG0362|consen  157 EWALRSVIMSKQYGNEDFLTKLVAKACVSILPL-MSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAK-----  230 (537)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhccc-ccccccceEEEEEecCCcccceeeEEEEeccccCCcccccc-----
Confidence               002222  6777899999999999999988 434  899999999999999964    47778888874433     


Q ss_pred             CeeEEEEeecCC-----CccEEEEecCCCcc---------CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHH
Q psy14945        347 EEKFTFVEECKN-----PQSVTILLKGPNKH---------TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHAL  412 (629)
Q Consensus       347 ~~~~~~~~~~~~-----~~~~TIll~g~~~~---------~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L  412 (629)
                      +.++++|. |+.     .+++|++|+.+.+.         .+++..+.+.++..        ..||.||+..|++|+ |+
T Consensus       231 ~arvAvf~-cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gv--------kViV~~g~V~em~Lh-fl  300 (537)
T KOG0362|consen  231 DARVAVFA-CPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGV--------KVIVSGGKVDEMTLH-FL  300 (537)
T ss_pred             cceeEEEe-cCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCC--------eEEEecCccchhhhh-hh
Confidence            67888887 652     37899999999954         56666677666542        458999999999996 99


Q ss_pred             Hhhhh-hcCcchHHHHHHHHHHHhhhh-----HHHHHhcCC-ChHHHHH-------HHHHhhcCCCC--ceEEEEeccCC
Q psy14945        413 QNYKN-TVKGKSRLGIQAYAEALLIIP-----KTIAVNSGF-DAQDTLV-------KLQEACGEAPG--VAVGVDVNSGE  476 (629)
Q Consensus       413 ~~~~~-~i~~~~k~~i~~fa~ALe~ip-----~~L~~NaG~-d~~~vl~-------~L~~~~~~~~~--~~~Gid~~t~~  476 (629)
                      ++|+. -++-.++|.+++||+.+..+|     .+..+..|+ |.+.+.+       .++....  ++  .++-++++|..
T Consensus       301 nky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~--~~~~~TvVLRgst~s  378 (537)
T KOG0362|consen  301 NKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST--GTRVATVVLRGATQS  378 (537)
T ss_pred             ccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccC--CCceeEEEEcccchh
Confidence            99985 223338999999999998877     345555676 4333221       1121111  22  35667888999


Q ss_pred             CCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHh
Q psy14945        477 VLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELAD  556 (629)
Q Consensus       477 i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  556 (629)
                      ++|..||.|.|.+...+...+       +++++||+|++| +++++.|.+++.+.+|.+|++++                
T Consensus       379 ~LDd~ERAVddgV~tyK~l~~-------d~rLlpGagatE-ieLak~i~~~g~~~~Gl~q~Aik----------------  434 (537)
T KOG0362|consen  379 ILDDAERAVDDGVNTYKALCS-------DSRLLPGAGATE-IELAKQISSRGATLPGLKQLAIK----------------  434 (537)
T ss_pred             hHHHHHHHHHHhHHHhhhhcc-------CCccccCCchhH-HHHHHHHHHhcccCCCcchhHHH----------------
Confidence            999999999999998888776       999999999999 99999999999999999999998                


Q ss_pred             hhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCC-cccccccCCccccHHHHHHHhhc
Q psy14945        557 LLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG-EVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       557 ~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g-~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                        .|++||+.+|++||||||+++.+++++|++.|.  ++.+.|+|++.+ .+.|+.+.||||.+.+|.|+|++
T Consensus       435 --~fa~Ale~~PktlaEnagl~~~evia~ly~~h~--~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~  503 (537)
T KOG0362|consen  435 --KFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ--GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKL  503 (537)
T ss_pred             --HHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc--CCCcceeeeeccccccChhhhchHHHHHHHHHHHHH
Confidence              689999999999999999999999999999996  356789999887 58999999999999999999985

>KOG0362|consensus

Probab=100.00  E-value=6.5e-38  Score=328.51  Aligned_cols=353  Identities=22%  Similarity=0.324  Sum_probs=312.1

Q ss_pred             hhhhcccccchhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccccc
Q psy14945        108 LTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVK  187 (629)
Q Consensus       108 ~~~~~s~~~~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~  187 (629)
                      .++.+|+.+..++++...|.-+.+...      |.  ..+++++|+|+|+.|+++++|+++.|++|++...  .-+++-+
T Consensus       161 rs~i~skq~~~ed~l~~lVa~ac~si~------p~--~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak  230 (537)
T KOG0362|consen  161 RSVIMSKQYGNEDFLTKLVAKACVSIL------PL--MSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAK  230 (537)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHhhc------cc--ccccccceEEEEEecCCcccceeeEEEEeccccC--Ccccccc
Confidence            366689999988877777666665532      22  1168999999999999999999999999998753  2347788


Q ss_pred             CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHh
Q psy14945        188 NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVN  267 (629)
Q Consensus       188 n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~  267 (629)
                      .+||++++||++...+++++         ++.+++..++..+-..|.+.++..        +.-|.             .
T Consensus       231 ~arvAvf~cP~d~~~TEtkg---------TvLi~~A~el~~FSKgEe~lle~~--------vk~Ia-------------~  280 (537)
T KOG0362|consen  231 DARVAVFACPFDIAQTETKG---------TVLLKNAKELLNFSKGEEALLEEQ--------VKAIA-------------D  280 (537)
T ss_pred             cceeEEEecCCCcccccCcc---------eeeecCcHhhhhhccccHHHHHHH--------HHHHH-------------h
Confidence            99999999999999999998         889999999999999998888887        66665             2


Q ss_pred             hccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcC
Q psy14945        268 LKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE  347 (629)
Q Consensus       268 ~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~  347 (629)
                      .+.    .+    +.+...+++..++|+.+.+|++++-.+++|++|+|+..||.+.+.+....+..+|+|.++..+++|+
T Consensus       281 ~gv----kV----iV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~  352 (537)
T KOG0362|consen  281 AGV----KV----IVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGD  352 (537)
T ss_pred             cCC----eE----EEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCC
Confidence            232    22    3467889999999999999999999999999999999999999999888888899999999999999


Q ss_pred             eeEEEEe-ecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHH
Q psy14945        348 EKFTFVE-ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLG  426 (629)
Q Consensus       348 ~~~~~~~-~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~  426 (629)
                      ..+++|. ++..+...|++|||+++..+++.||.++|+++..+...++++++||+|++|++|++.|.+|+..+++-.|+.
T Consensus       353 ~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~A  432 (537)
T KOG0362|consen  353 TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLA  432 (537)
T ss_pred             ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhH
Confidence            9999886 455678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccC-CCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        427 IQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG-EVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       427 i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~-~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++.||+||+.+|++|++|+|.+..+++.+|...|.  ++.+.|+|...+ ...|..+.+|||-+.+|+++++.|+++|..
T Consensus       433 ik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~--~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~t  510 (537)
T KOG0362|consen  433 IKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ--GGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALT  510 (537)
T ss_pred             HHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc--CCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhhe
Confidence            99999999999999999999999999999998887  345678887755 589999999999999999999999999999


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      ...|+
T Consensus       511 vl~vD  515 (537)
T KOG0362|consen  511 VLTVD  515 (537)
T ss_pred             eeehh
Confidence            88876

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.4e-37  Score=348.56  Aligned_cols=308  Identities=19%  Similarity=0.292  Sum_probs=258.9

Q ss_pred             chhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCC-------cccccCe
Q psy14945        117 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDM-------PKSVKNA  189 (629)
Q Consensus       117 ~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m-------~~~i~n~  189 (629)
                      ..+.++.++++++..- |..             +.+.|.+.+| +..||++++|++|++++.+|+|       |+.++||
T Consensus       153 ~~~~ls~lv~~Av~~v-~~~-------------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~  217 (542)
T PRK00013        153 GDEEIGKLIAEAMEKV-GKE-------------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENP  217 (542)
T ss_pred             chHHHHHHHHHHHHHh-CcC-------------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecC
Confidence            3466788888887632 221             1367777777 8889999999999999999965       8889999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|+++|+.+..                      ..+   ++        ..        +..+.             ..+
T Consensus       218 ~Ilv~d~~i~~----------------------~~~---l~--------~~--------l~~i~-------------~~g  243 (542)
T PRK00013        218 YILITDKKISN----------------------IQD---LL--------PV--------LEQVA-------------QSG  243 (542)
T ss_pred             EEEEEcCccCC----------------------HHH---HH--------HH--------HHHHH-------------HhC
Confidence            99999997621                      111   11        22        33333             122


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHhC------cEEEeccc-----hhhHHHHHHHhCCcccc-----cccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFAREG------IIALRRAK-----RRNMERLSLACGGTAMN-----SVEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~~------I~vv~~v~-----~~dl~rIak~tGg~i~~-----s~~~l~~~~  333 (629)
                      .    .+    ++++++|++.++++|..++      |.++++.+     +.+++|||++|||++++     ++..++.+.
T Consensus       244 ~----~l----vi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~  315 (542)
T PRK00013        244 K----PL----LIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLED  315 (542)
T ss_pred             C----CE----EEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHH
Confidence            1    11    3468999999999999997      88998775     67999999999999999     688888888


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCCc-----------------------------------cEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNPQ-----------------------------------SVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~~-----------------------------------~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.+++.   .+++++|++|.++.                                   .+||++||+++..++|.+
T Consensus       316 LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~e  392 (542)
T PRK00013        316 LGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKK  392 (542)
T ss_pred             CCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence            9999999854   47888998777654                                   688999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|+++ ....+.+++++++|++||+.||++|++|+|+|+.+++.+|+.
T Consensus       393 r~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~  470 (542)
T PRK00013        393 DRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKN  470 (542)
T ss_pred             HHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            99999999999999997 9999999999999999988 677888999999999999999999999999999999999988


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .|.    .++|+|+.++.+.|+.+.|||||+.||+++|+.|+++|...+.++
T Consensus       471 ~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id  518 (542)
T PRK00013        471 GKG----KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTE  518 (542)
T ss_pred             hcC----CCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHH
Confidence            762    478999999999999999999999999999999999888776665

>PTZ00114 Heat shock protein 60; Provisional

Probab=100.00  E-value=3.2e-37  Score=347.26  Aligned_cols=307  Identities=19%  Similarity=0.261  Sum_probs=255.4

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccce-EEEEeEEEeccCCCCCC-------cccccCe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCI-ILVKGVVLNHGARHPDM-------PKSVKNA  189 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS-~li~Gvv~~~~~~~~~m-------~~~i~n~  189 (629)
                      ++.++.++++|+.. .|..             +  .|.+.+|+++.|| ++++|++|++++.+|+|       |+.++||
T Consensus       166 ~~~l~~li~eAv~~-vg~~-------------g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~  229 (555)
T PTZ00114        166 DVEIGSLIADAMDK-VGKD-------------G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENP  229 (555)
T ss_pred             hHHHHHHHHHHHHH-hCcC-------------C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCC
Confidence            45677777777763 2321             0  2677889999998 89999999999999975       8899999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|+++|++|+.      .                .+           +...        +..+.             ..+
T Consensus       230 ~Ili~d~~L~~------~----------------~~-----------i~~~--------le~i~-------------~~~  255 (555)
T PTZ00114        230 LILVTDKKISS------I----------------QS-----------ILPI--------LEHAV-------------KNK  255 (555)
T ss_pred             EEEEEcCCCCC------H----------------HH-----------HHHH--------HHHHH-------------HhC
Confidence            99999999852      0                11           1111        22232             111


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHhC------cEEEec-----cchhhHHHHHHHhCCcccccc------cccCcC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFAREG------IIALRR-----AKRRNMERLSLACGGTAMNSV------EGLEPA  332 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~~------I~vv~~-----v~~~dl~rIak~tGg~i~~s~------~~l~~~  332 (629)
                      .    .+    ++++++|++.++++|..++      |.++++     +++++++|||+.|||+++++.      ..+++.
T Consensus       256 ~----~l----lI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~  327 (555)
T PTZ00114        256 R----PL----LIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPS  327 (555)
T ss_pred             C----CE----EEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHH
Confidence            1    11    3458899999999999996      888977     456899999999999999997      667778


Q ss_pred             CCcccceEEEEEEcCeeEEEEeecC-----------------------------------CCccEEEEecCCCccCHHHH
Q psy14945        333 HLGYAGSVFEHVLGEEKFTFVEECK-----------------------------------NPQSVTILLKGPNKHTLAQT  377 (629)
Q Consensus       333 ~lG~~~~v~e~~i~~~~~~~~~~~~-----------------------------------~~~~~TIll~g~~~~~l~e~  377 (629)
                      .+|+|+.+++.+   .+++++++|.                                   .+..+||++||+++..++|.
T Consensus       328 ~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~  404 (555)
T PTZ00114        328 MLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEK  404 (555)
T ss_pred             HcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHH
Confidence            899999999765   4566666554                                   45789999999999999999


Q ss_pred             HHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh--hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHH
Q psy14945        378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN--TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVK  455 (629)
Q Consensus       378 ~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~--~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~  455 (629)
                      +|+++||+++++++++++ +|||||++|++++.+|++++.  ..++.+++++++|++||+.||++|++|+|+|+.+++.+
T Consensus       405 ~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~  483 (555)
T PTZ00114        405 KDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEK  483 (555)
T ss_pred             HHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999988 999999999999999998875  57788999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        456 LQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       456 L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |+.  .  ++.++|+|+.+|++.|+.+.|||||+.||+++++.|+++|...+.++
T Consensus       484 l~~--~--~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id  534 (555)
T PTZ00114        484 ILE--K--KDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTE  534 (555)
T ss_pred             HHh--c--CCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHH
Confidence            976  1  34579999999999999999999999999999999999888877665

>cd03344 GroEL GroEL_like type I chaperonin

Probab=100.00  E-value=7.9e-37  Score=341.59  Aligned_cols=304  Identities=21%  Similarity=0.317  Sum_probs=255.2

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccc-eEEEEeEEEeccCCCCCC---c----ccccCe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVC-IILVKGVVLNHGARHPDM---P----KSVKNA  189 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~d-S~li~Gvv~~~~~~~~~m---~----~~i~n~  189 (629)
                      .+.++.++++|+.. .|..             +.+.  ..+|++..| |++++|++|++++.+|+|   |    ++++||
T Consensus       152 ~~~l~~lv~~A~~~-v~~~-------------~~i~--v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~  215 (520)
T cd03344         152 DEEIGELIAEAMEK-VGKD-------------GVIT--VEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENP  215 (520)
T ss_pred             hHHHHHHHHHHHHH-hccC-------------CcEE--EEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCC
Confidence            57788888888874 2221             1122  358999999 799999999999999875   3    679999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|+++|++|..                      ..++.+           .        +..+.             ..+
T Consensus       216 ~Ili~d~~l~~----------------------~~~l~~-----------~--------l~~i~-------------~~~  241 (520)
T cd03344         216 YILLTDKKISS----------------------IQELLP-----------I--------LELVA-------------KAG  241 (520)
T ss_pred             EEEEECCCCCC----------------------HHHHHH-----------H--------HHHHH-------------hhC
Confidence            99999999731                      111111           1        33333             112


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHhCc------EEEecc-----chhhHHHHHHHhCCcccc-----cccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFAREGI------IALRRA-----KRRNMERLSLACGGTAMN-----SVEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I------~vv~~v-----~~~dl~rIak~tGg~i~~-----s~~~l~~~~  333 (629)
                      .    .+    ++++++|++.++++|..+++      .++++.     ++++++|||+.|||++++     ++..++++.
T Consensus       242 ~----~l----vi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~  313 (520)
T cd03344         242 R----PL----LIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLED  313 (520)
T ss_pred             C----CE----EEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHH
Confidence            1    11    34689999999999999999      888765     677999999999999999     677788888


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCC-----------------------------------ccEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNP-----------------------------------QSVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~-----------------------------------~~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.+++.+   .+++++.+|..+                                   ..|||+|||+++.+++|.+
T Consensus       314 LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~  390 (520)
T cd03344         314 LGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKK  390 (520)
T ss_pred             CCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHH
Confidence            99999998644   788888877664                                   4899999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|++++. .++.+++++++|++||+.||++|++|+|+|+.+++++|+.
T Consensus       391 r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~  468 (520)
T cd03344         391 DRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLE  468 (520)
T ss_pred             HHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            99999999999999998 999999999999999999887 8889999999999999999999999999999999999987


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEE
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVI  509 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV  509 (629)
                      .|.     ++|+|+.+|++.|+.+.|||||+.||.++++.|+++|...+.+
T Consensus       469 ~~~-----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i  514 (520)
T cd03344         469 SPD-----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT  514 (520)
T ss_pred             hcC-----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence            663     6899999999999999999999999999999999988766544

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=4.6e-37  Score=344.46  Aligned_cols=306  Identities=19%  Similarity=0.276  Sum_probs=255.5

Q ss_pred             chhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccc-eEEEEeEEEeccCCCCC-------CcccccC
Q psy14945        117 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVC-IILVKGVVLNHGARHPD-------MPKSVKN  188 (629)
Q Consensus       117 ~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~d-S~li~Gvv~~~~~~~~~-------m~~~i~n  188 (629)
                      ..+.++.++++++... |..             +.+.+  ..|++..| |++++|++|++++.+|+       ||++++|
T Consensus       153 ~~~~l~~lv~~Av~~v-~~~-------------g~i~i--~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n  216 (542)
T PRK12849        153 GDEEIGELIAEAMEKV-GKD-------------GVITV--EESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLED  216 (542)
T ss_pred             ChHHHHHHHHHHHHHh-ccC-------------CcEeE--EeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeC
Confidence            3567888888888742 221             12233  26999887 89999999999999996       4889999


Q ss_pred             eeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhh
Q psy14945        189 AHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNL  268 (629)
Q Consensus       189 ~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~  268 (629)
                      |+|+++|+.++.                      .+++.+           .        +..+.             ..
T Consensus       217 ~~Ili~d~~i~~----------------------~~~~~~-----------~--------l~~i~-------------~~  242 (542)
T PRK12849        217 PLILLTDKKISS----------------------LQDLLP-----------L--------LEKVA-------------QS  242 (542)
T ss_pred             cEEEeecCCcCC----------------------HHHHHH-----------H--------HHHHH-------------Hh
Confidence            999999996631                      111111           1        33333             11


Q ss_pred             ccccccCccccccccccCCCHHHHHHHHHh------CcEEEeccc-----hhhHHHHHHHhCCcccc-----cccccCcC
Q psy14945        269 KMHKFAPDCSTSDRYRTGIDPQSLDLFARE------GIIALRRAK-----RRNMERLSLACGGTAMN-----SVEGLEPA  332 (629)
Q Consensus       269 ~~~~~l~v~~~~~l~~k~i~~~~~~~la~~------~I~vv~~v~-----~~dl~rIak~tGg~i~~-----s~~~l~~~  332 (629)
                      +.    .    .++++++|++.++++|.++      +|.++++.+     +.+++|||++|||++++     +++.+++.
T Consensus       243 ~~----~----lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~  314 (542)
T PRK12849        243 GK----P----LLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLD  314 (542)
T ss_pred             CC----C----EEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHH
Confidence            21    1    1356899999999999999      999999876     34699999999999999     57778888


Q ss_pred             CCcccceEEEEEEcCeeEEEEeecCCC-----------------------------------ccEEEEecCCCccCHHHH
Q psy14945        333 HLGYAGSVFEHVLGEEKFTFVEECKNP-----------------------------------QSVTILLKGPNKHTLAQT  377 (629)
Q Consensus       333 ~lG~~~~v~e~~i~~~~~~~~~~~~~~-----------------------------------~~~TIll~g~~~~~l~e~  377 (629)
                      .+|+|+.+++   ++++++++++|.++                                   ..+||+|||+++..++|.
T Consensus       315 ~LG~~~~v~~---~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~  391 (542)
T PRK12849        315 DLGRAKRVTI---TKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKER  391 (542)
T ss_pred             HCceeeEEEE---eeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH
Confidence            8999999985   45888888877664                                   379999999999999999


Q ss_pred             HHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHH
Q psy14945        378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ  457 (629)
Q Consensus       378 ~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~  457 (629)
                      +|+++||+++++++++++ +|||||++|++++.+|++++ .+++.+++++++|++||+.||++|++|+|+|+.+++++|+
T Consensus       392 er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~  469 (542)
T PRK12849        392 KDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVL  469 (542)
T ss_pred             HHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            999999999999999998 99999999999999999998 8888999999999999999999999999999999999998


Q ss_pred             HhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        458 EACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       458 ~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ..|     .++|+|+.++++.|+.+.|||||+.+|.++++.|+++|...+.++
T Consensus       470 ~~~-----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id  517 (542)
T PRK12849        470 ELE-----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTE  517 (542)
T ss_pred             hhC-----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHH
Confidence            765     258999999999999999999999999999999999888776654

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=1.4e-36  Score=340.80  Aligned_cols=307  Identities=18%  Similarity=0.280  Sum_probs=257.0

Q ss_pred             chhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCC-------CcccccCe
Q psy14945        117 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPD-------MPKSVKNA  189 (629)
Q Consensus       117 ~~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~-------m~~~i~n~  189 (629)
                      ..+.++.++++++.. .|..             +.++|.+.. ++..++++++|++|++++.+|+       ||++++||
T Consensus       154 ~~~~l~~lv~~Av~~-vg~~-------------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~  218 (541)
T PRK12851        154 GDAEIGRLVAEAMEK-VGNE-------------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDP  218 (541)
T ss_pred             ChHHHHHHHHHHHHH-hccc-------------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEeccc
Confidence            356788888888873 2321             124555555 6788899999999999999996       99999999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|+++|++++.                         ...        +...        +..+.             ..+
T Consensus       219 ~Ilv~d~~i~~-------------------------~~~--------i~~~--------l~~i~-------------~~~  244 (541)
T PRK12851        219 YILIHEKKISN-------------------------LQD--------LLPV--------LEAVV-------------QSG  244 (541)
T ss_pred             EEEEEcCCcCc-------------------------HHH--------HHHH--------HHHHH-------------HhC
Confidence            99999998631                         011        1122        33333             112


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHhCc------EEEec-----cchhhHHHHHHHhCCcccc-----cccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFAREGI------IALRR-----AKRRNMERLSLACGGTAMN-----SVEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I------~vv~~-----v~~~dl~rIak~tGg~i~~-----s~~~l~~~~  333 (629)
                      .    .    .++++++|++.++++|..+++      .++++     +++.+++||+++|||++++     ++..+++..
T Consensus       245 ~----~----lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~  316 (541)
T PRK12851        245 K----P----LLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQ  316 (541)
T ss_pred             c----C----EEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHH
Confidence            1    1    134689999999999999997      78886     7788999999999999999     577788888


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCCc-----------------------------------cEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNPQ-----------------------------------SVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~~-----------------------------------~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.+++.+   ++++++.+|+++.                                   .+||++||+++.+++|.+
T Consensus       317 LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~e  393 (541)
T PRK12851        317 LGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKK  393 (541)
T ss_pred             cCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence            99999998644   7888888776642                                   789999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|++++.. .+.+++++++|++||+.||++|++|+|+|+.+++.+|+.
T Consensus       394 r~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~  471 (541)
T PRK12851        394 DRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE  471 (541)
T ss_pred             HHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            99999999999999998 9999999999999999988765 788999999999999999999999999999999999987


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .|.     ++|+|+.++++.|+.+.|||||+.||+++++.|+++|...+.++
T Consensus       472 ~~~-----~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id  518 (541)
T PRK12851        472 KPG-----GYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTE  518 (541)
T ss_pred             hCC-----CeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHH
Confidence            652     58999999999999999999999999999999999888876665

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=4.8e-36  Score=336.69  Aligned_cols=306  Identities=19%  Similarity=0.279  Sum_probs=251.8

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCC-------cccccCee
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDM-------PKSVKNAH  190 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m-------~~~i~n~k  190 (629)
                      .+.++.++++|+.. .|..             +.+.+.... ..-.++++++|++|++++.+|+|       |++++||+
T Consensus       155 ~~~l~~lv~eAv~~-vg~~-------------g~i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~  219 (544)
T PRK12850        155 DESIGEMIAEAMDK-VGKE-------------GVITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPY  219 (544)
T ss_pred             HHHHHHHHHHHHHH-hccc-------------CceeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCE
Confidence            46688888888874 2321             112222211 12268999999999999999975       88899999


Q ss_pred             EEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc
Q psy14945        191 ILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM  270 (629)
Q Consensus       191 Ill~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~  270 (629)
                      |+++|+.++.                         +..        +...        +..+.             ..+.
T Consensus       220 Ill~d~~i~~-------------------------~~~--------i~~~--------l~~i~-------------~~g~  245 (544)
T PRK12850        220 ILLHEKKISN-------------------------LQD--------LLPI--------LEAVV-------------QSGR  245 (544)
T ss_pred             EEEEecccCC-------------------------HHH--------HHHH--------HHHHH-------------HhCC
Confidence            9999996621                         111        1122        33333             1121


Q ss_pred             ccccCccccccccccCCCHHHHHHHHHhCc------EEEec-----cchhhHHHHHHHhCCcccc-----cccccCcCCC
Q psy14945        271 HKFAPDCSTSDRYRTGIDPQSLDLFAREGI------IALRR-----AKRRNMERLSLACGGTAMN-----SVEGLEPAHL  334 (629)
Q Consensus       271 ~~~l~v~~~~~l~~k~i~~~~~~~la~~~I------~vv~~-----v~~~dl~rIak~tGg~i~~-----s~~~l~~~~l  334 (629)
                          .+    ++++++|++.++++|..++|      .++++     +++.+++|||++|||++++     +++.+++..+
T Consensus       246 ----~l----vI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~L  317 (544)
T PRK12850        246 ----PL----LIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDML  317 (544)
T ss_pred             ----CE----EEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHc
Confidence                11    34688999999999999999      89887     6788999999999999999     6777888889


Q ss_pred             cccceEEEEEEcCeeEEEEeecCCCc-----------------------------------cEEEEecCCCccCHHHHHH
Q psy14945        335 GYAGSVFEHVLGEEKFTFVEECKNPQ-----------------------------------SVTILLKGPNKHTLAQTKD  379 (629)
Q Consensus       335 G~~~~v~e~~i~~~~~~~~~~~~~~~-----------------------------------~~TIll~g~~~~~l~e~~r  379 (629)
                      |+|+.+++.   +++++++.+|.++.                                   .+||+|||+++.+++|.+|
T Consensus       318 G~~~~v~~~---~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er  394 (544)
T PRK12850        318 GRAKRVLIT---KENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKD  394 (544)
T ss_pred             CCCcEEEEE---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHH
Confidence            999999854   37888998777643                                   7999999999999999999


Q ss_pred             HHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHh
Q psy14945        380 AVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA  459 (629)
Q Consensus       380 ~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~  459 (629)
                      +++||+++++++++++ +|||||++|++++.+|+++ ....+.+++++++|++||+.||++|++|+|+|+.+++++|+..
T Consensus       395 ~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~  472 (544)
T PRK12850        395 RVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAEL  472 (544)
T ss_pred             HHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence            9999999999999997 9999999999999999988 5678889999999999999999999999999999999999876


Q ss_pred             hcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        460 CGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       460 ~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |.     ++|+|+.++.+.|+.+.||+||+.||+++++.|+++|...+.++
T Consensus       473 ~~-----~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id  518 (544)
T PRK12850        473 PG-----NFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTE  518 (544)
T ss_pred             CC-----CcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHH
Confidence            53     57999999999999999999999999999999999888876665

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=100.00  E-value=4.1e-36  Score=337.83  Aligned_cols=306  Identities=20%  Similarity=0.254  Sum_probs=252.9

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCc-cceEEEEeEEEeccCCCCC-------CcccccCe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD-VCIILVKGVVLNHGARHPD-------MPKSVKNA  189 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~-~dS~li~Gvv~~~~~~~~~-------m~~~i~n~  189 (629)
                      ++.++.++++++.. .|..             +.+.+.  .|++. .+|++++|+.|++++.+|+       |+..++||
T Consensus       155 ~~~l~~li~eA~~~-vg~~-------------g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~  218 (545)
T PRK12852        155 DAAIGKMIAQAMQK-VGNE-------------GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDA  218 (545)
T ss_pred             hHHHHHHHHHHHHH-hccC-------------Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCc
Confidence            46677777777763 2321             122332  37776 7899999999999999996       88999999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|+++++.+..                      .+           .+...        +..+.             ..+
T Consensus       219 ~Ili~d~~i~~----------------------~~-----------~i~~~--------l~~i~-------------~~g  244 (545)
T PRK12852        219 YILLHEKKLSG----------------------LQ-----------AMLPV--------LEAVV-------------QSG  244 (545)
T ss_pred             eEEEecCccCC----------------------HH-----------HHHHH--------HHHHH-------------HhC
Confidence            99999886521                      01           11112        33333             112


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHh------CcEEEeccc-----hhhHHHHHHHhCCcccc-----cccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFARE------GIIALRRAK-----RRNMERLSLACGGTAMN-----SVEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~------~I~vv~~v~-----~~dl~rIak~tGg~i~~-----s~~~l~~~~  333 (629)
                      .    .+    ++++++|++.++++|..+      +|.++++.+     +.+++|||++|||++++     ++.++++..
T Consensus       245 ~----~l----vI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~  316 (545)
T PRK12852        245 K----PL----LIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKM  316 (545)
T ss_pred             c----CE----EEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHH
Confidence            1    11    345889999999999986      799998654     77999999999999999     677888889


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCC-----------------------------------ccEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNP-----------------------------------QSVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~-----------------------------------~~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.+++.+   .+++++.++..+                                   ..+||+|||+++.+++|.+
T Consensus       317 lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~e  393 (545)
T PRK12852        317 LGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKK  393 (545)
T ss_pred             CCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence            99999988544   688888776653                                   6789999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|.+++.. .+.+|+++++|++||+.||++|++|+|+|+.+++++|+.
T Consensus       394 r~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~  471 (545)
T PRK12852        394 DRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILE  471 (545)
T ss_pred             HHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            99999999999999997 9999999999999999988766 677999999999999999999999999999999999987


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .|.    .++|+|+.++++.|+.+.|||||+.||+++++.|+++|...+.++
T Consensus       472 ~~~----~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id  519 (545)
T PRK12852        472 NKS----ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTE  519 (545)
T ss_pred             hcC----CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHH
Confidence            663    478999999999999999999999999999999999988877765

>KOG0357|consensus

Probab=100.00  E-value=5.9e-38  Score=314.92  Aligned_cols=288  Identities=29%  Similarity=0.395  Sum_probs=257.0

Q ss_pred             cccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH------hhccccc-------cCcc------------
Q psy14945        223 QHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV------NLKMHKF-------APDC------------  277 (629)
Q Consensus       223 ~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~------~~~~~~~-------l~v~------------  277 (629)
                      .|+.+++++.-+..|+.++|||||.|+.+.+.++.+|..|+..+      .-++...       +.-|            
T Consensus        71 d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~ef~emi~~  150 (400)
T KOG0357|consen   71 VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFEFEEMIQQ  150 (400)
T ss_pred             chHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcccccHHHHHHH
Confidence            35899999999999999999999999999999999999998661      0011000       0001            


Q ss_pred             -----ccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEc--CeeE
Q psy14945        278 -----STSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG--EEKF  350 (629)
Q Consensus       278 -----~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~--~~~~  350 (629)
                           +..++||+|++|.+.++|.+++..+++|+.-.+++-|+..|||++++.+.+++++.+|+++.+.|.+++  ++++
T Consensus       151 vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkm  230 (400)
T KOG0357|consen  151 IKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKM  230 (400)
T ss_pred             HHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceE
Confidence                 013678999999999999999999999999999999999999999999999999999999999999987  6899


Q ss_pred             EEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHH
Q psy14945        351 TFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAY  430 (629)
Q Consensus       351 ~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~f  430 (629)
                      .+++.|++++..||.+||.++.+++|.+|+++||+|++|++++|.+||.|||+.|+.++-.+.+.+.++++.+|+.+++|
T Consensus       231 lviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~raf  310 (400)
T KOG0357|consen  231 LVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAF  310 (400)
T ss_pred             EEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        431 AEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       431 a~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |+||++||..|++|+|+++++.+++++..+...+++..|+|+.-..--||.+.+++|++.-|++.+..|+..+.+.+-++
T Consensus       311 a~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKid  390 (400)
T KOG0357|consen  311 ADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKID  390 (400)
T ss_pred             HHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999886665466789999876666899999999999999999998888776655443

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=100.00  E-value=3.5e-37  Score=345.38  Aligned_cols=371  Identities=18%  Similarity=0.198  Sum_probs=260.7

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-------c--cccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-------K--MHKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-------~--~~~~  273 (629)
                      ..||+++|+++.++.|++++|||||+|+.++++||++|..|++++                   .+       .  .+..
T Consensus        60 ~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~  139 (517)
T TIGR02342        60 VIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREI  139 (517)
T ss_pred             ccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHH
Confidence            479999999999999999999999999999999999999999861                   00       0  0111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccc--------hhhHHHHHHHhCCccccccc----ccCcCCC---cccc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK--------RRNMERLSLACGGTAMNSVE----GLEPAHL---GYAG  338 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~--------~~dl~rIak~tGg~i~~s~~----~l~~~~l---G~~~  338 (629)
                      +..++.+++++|.+ ....++|++.++.++..+.        ..+++++.+..|+++.+|..    .++....   +..+
T Consensus       140 l~~va~tsl~sK~~-~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk  218 (517)
T TIGR02342       140 LIKSATTSLSSKVV-SQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPT  218 (517)
T ss_pred             HHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCc
Confidence            22233355666644 3455666666665554442        13577888899999988842    1332221   3333


Q ss_pred             eEEEEEEcCeeEEEEeecCC-----CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCCh-----HHH
Q psy14945        339 SVFEHVLGEEKFTFVEECKN-----PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA-----FEV  406 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~~-----~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~-----~El  406 (629)
                      .     +.+.+++++. |+-     ....++++..+.++  .+++..+.+...+..+..... +.|+..+|.     .++
T Consensus       219 ~-----i~n~kI~ll~-~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~-~lvi~~~~I~~~~l~~l  291 (517)
T TIGR02342       219 R-----IEKAKIGLIQ-FQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGC-NVLLIQKSILRDAVNDL  291 (517)
T ss_pred             c-----ccCCcEEEEe-cCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEECCCcccccccHH
Confidence            3     4578888775 321     13567777655432  233334555555554543322 456677776     677


Q ss_pred             HHHHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-H----HHhcCCC-hHHHHH----HHHH-hhcCC--CCceEEEEe
Q psy14945        407 AAWHALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-I----AVNSGFD-AQDTLV----KLQE-ACGEA--PGVAVGVDV  472 (629)
Q Consensus       407 ~l~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-L----~~NaG~d-~~~vl~----~L~~-~~~~~--~~~~~Gid~  472 (629)
                      +++ ||.+++. .+....+..++++|++....+-. +    .+..|.. .++..+    .+.. .....  +..++-+++
T Consensus       292 ~~~-~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG  370 (517)
T TIGR02342       292 ALH-FLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRG  370 (517)
T ss_pred             HHH-HHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeC
Confidence            775 8877664 55566789999999886544311 0    1112321 111000    0000 00000  011344577


Q ss_pred             ccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHH
Q psy14945        473 NSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVER  552 (629)
Q Consensus       473 ~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~  552 (629)
                      .|..++++.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.++.+|++++            
T Consensus       371 ~t~~~l~E~er~i~DAl~~v~~~~~-------~~~~VpGGGa~e-~~ls~~l~~~~~~~~~~~~~~i~------------  430 (517)
T TIGR02342       371 SNKLVIDEAERSLHDALCVIRSLVK-------KRGLIPGGGAPE-IEIAIKLSKLARTMKGVESYCVR------------  430 (517)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhh-------CCCEEECcCHHH-HHHHHHHHHHHhcCCcHHHHHHH------------
Confidence            7889999999999999999999997       899999999999 99999999998888999999998            


Q ss_pred             HHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        553 ELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       553 ~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                            +|++|||+||++||+|||+|+.+++++|+..|++ ++.++|+|+.+|+++||.+.|||||+.||+++|++
T Consensus       431 ------~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~  499 (517)
T TIGR02342       431 ------AFADALEVIPYTLAENAGLNPIDVVTELRNRHAN-GEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTL  499 (517)
T ss_pred             ------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCccceecCCCCccchhhccceEcHHHHHHHHHH
Confidence                  5778888899999999999999999999999987 56789999999999999999999999999999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02348 GroEL chaperonin GroL

Probab=100.00  E-value=1e-35  Score=333.23  Aligned_cols=305  Identities=19%  Similarity=0.249  Sum_probs=250.8

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCc-cceEEEEeEEEeccCCCCCC-------cccccCe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD-VCIILVKGVVLNHGARHPDM-------PKSVKNA  189 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~-~dS~li~Gvv~~~~~~~~~m-------~~~i~n~  189 (629)
                      .+.++.++++++.. .|..             +.+.|.  .|++. .+|++++|++|++++.+|+|       ++.++||
T Consensus       153 ~~~l~~lv~~A~~~-v~~~-------------~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~  216 (524)
T TIGR02348       153 DEEIGSLIAEAMEK-VGKD-------------GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENP  216 (524)
T ss_pred             hHHHHHHHHHHHHH-hCcC-------------CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCc
Confidence            46678888887763 2221             123333  36666 66999999999999999975       8889999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|+++++.++.                      ..+   +        ...        +..+.             ..+
T Consensus       217 ~Ili~d~~i~~----------------------~~~---i--------~~~--------l~~i~-------------~~g  242 (524)
T TIGR02348       217 YILITDKKISN----------------------IKD---L--------LPL--------LEKVA-------------QSG  242 (524)
T ss_pred             eeeeccCCcCC----------------------HHH---H--------HHH--------HHHHH-------------HhC
Confidence            99999997631                      111   1        112        33333             112


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHh------CcEEEeccch-----hhHHHHHHHhCCcccc-----cccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFARE------GIIALRRAKR-----RNMERLSLACGGTAMN-----SVEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~------~I~vv~~v~~-----~dl~rIak~tGg~i~~-----s~~~l~~~~  333 (629)
                      .    .+    ++++++|++.++++|..+      +|.++++.+.     .+++|||++|||++++     ++..++++.
T Consensus       243 ~----~l----vi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~  314 (524)
T TIGR02348       243 K----PL----LIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDD  314 (524)
T ss_pred             c----CE----EEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHH
Confidence            1    11    346899999999999987      8899987743     6899999999999999     788888889


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCCc-----------------------------------cEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNPQ-----------------------------------SVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~~-----------------------------------~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.+++.   +++++++.+|.++.                                   .+||++||+++..++|.+
T Consensus       315 LG~~~~v~~~---~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~e  391 (524)
T TIGR02348       315 LGKAKKVTVD---KDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKK  391 (524)
T ss_pred             CCCceEEEEe---ecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence            9999999854   37888887776543                                   588999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|++ .....+.+++++++|++||+.||++|++|+|+|+.+++++|+.
T Consensus       392 r~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~  469 (524)
T TIGR02348       392 LRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKE  469 (524)
T ss_pred             HHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            99999999999999998 999999999999999988 5677888999999999999999999999999999999999976


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      . .  +  .+|+|+.++.+.|+.+.|||||+.||+++++.|+++|...+.++
T Consensus       470 ~-~--~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id  516 (524)
T TIGR02348       470 S-K--G--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTE  516 (524)
T ss_pred             c-C--C--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHH
Confidence            5 2  2  38999999999999999999999999999999999888766554

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>CHL00093 groEL chaperonin GroEL

Probab=100.00  E-value=2.8e-36  Score=338.10  Aligned_cols=281  Identities=19%  Similarity=0.294  Sum_probs=231.7

Q ss_pred             CCccceEEEEeEEEeccCCCCCC---cc----cccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHH
Q psy14945        160 KSDVCIILVKGVVLNHGARHPDM---PK----SVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIAR  232 (629)
Q Consensus       160 gs~~dS~li~Gvv~~~~~~~~~m---~~----~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~  232 (629)
                      ++..++++++|+.|++++.+|+|   |+    .++||+|++++++|++.+.                     +       
T Consensus       181 ~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~---------------------~-------  232 (529)
T CHL00093        181 STVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQ---------------------D-------  232 (529)
T ss_pred             ccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHH---------------------H-------
Confidence            35677899999999999999975   54    4999999999999975211                     0       


Q ss_pred             HHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHH--HHH----hCcEEEecc
Q psy14945        233 ASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDL--FAR----EGIIALRRA  306 (629)
Q Consensus       233 e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~--la~----~~I~vv~~v  306 (629)
                          +...        +..+.             ..+.  . +     ++++++|++.++.+  +.+    ++|.++++.
T Consensus       233 ----i~~~--------l~~i~-------------~~~~--~-l-----vi~~~~i~~~al~~l~l~k~~g~~~i~avr~~  279 (529)
T CHL00093        233 ----LLPI--------LEQVT-------------KTKR--P-L-----LIIAEDVEKEALATLVLNKLRGIVNVVAVRAP  279 (529)
T ss_pred             ----HHHH--------HHHHH-------------hcCC--C-E-----EEEcCCCChHHHHHHHHhhhcccceEEEEecC
Confidence                1111        23333             1111  0 1     34678998855444  476    589999988


Q ss_pred             c-----hhhHHHHHHHhCCcccc-----cccccCcCCCcccceEEEEEEcCeeEEEEee---------cCCC--------
Q psy14945        307 K-----RRNMERLSLACGGTAMN-----SVEGLEPAHLGYAGSVFEHVLGEEKFTFVEE---------CKNP--------  359 (629)
Q Consensus       307 ~-----~~dl~rIak~tGg~i~~-----s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~---------~~~~--------  359 (629)
                      +     +.+++|||++|||++++     ++..+++..+|+|+.+++.   +++++++++         |...        
T Consensus       280 ~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  356 (529)
T CHL00093        280 GFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVT---KDSTTIIADGNEEQVKARCEQLRKQIEIAD  356 (529)
T ss_pred             CCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEe---cCEEEEEecCcHHHHHHHHHHHHHHhhhcC
Confidence            4     36899999999999999     6888888899999999854   367777762         3221        


Q ss_pred             -----------------ccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh-hcCc
Q psy14945        360 -----------------QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN-TVKG  421 (629)
Q Consensus       360 -----------------~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~-~i~~  421 (629)
                                       ..+||++||+++..++|.+|+++||+++++++++++ +|||||++|++++.+|++++. ..++
T Consensus       357 ~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g  435 (529)
T CHL00093        357 SSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKE  435 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCCh
Confidence                             367899999999999999999999999999999998 999999999999999999876 7888


Q ss_pred             chHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhh
Q psy14945        422 KSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWII  501 (629)
Q Consensus       422 ~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e  501 (629)
                      .+++++++|++||+.||++|++|+|+|+.+++.+++..     ..++|+|+.+|++.|+.+.|||||+.||.++++.|++
T Consensus       436 ~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e  510 (529)
T CHL00093        436 DELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAAS  510 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999653     2478999999999999999999999999999999999


Q ss_pred             cCCCCeEEe
Q psy14945        502 SGLHPRVIT  510 (629)
Q Consensus       502 ~a~~~~iV~  510 (629)
                      +|...+.++
T Consensus       511 ~a~~iL~id  519 (529)
T CHL00093        511 IASMILTTE  519 (529)
T ss_pred             HHHHHHHHH
Confidence            887765554

>KOG0358|consensus

Probab=100.00  E-value=1.4e-38  Score=323.11  Aligned_cols=370  Identities=19%  Similarity=0.216  Sum_probs=258.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH----------------hhc------------cccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV----------------NLK------------MHKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~----------------~~~------------~~~~  273 (629)
                      .-||+++|+++-+..||.+.||||||||.++|.||..|+.|++++                ...            .++.
T Consensus        77 vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~  156 (534)
T KOG0358|consen   77 VLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRES  156 (534)
T ss_pred             hhChHHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHH
Confidence            469999999999999999999999999999999999999999882                000            0111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccch--------hhHHHHHHHhCCcccccc--cc--cCcCCCcccceEE
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR--------RNMERLSLACGGTAMNSV--EG--LEPAHLGYAGSVF  341 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~--------~dl~rIak~tGg~i~~s~--~~--l~~~~lG~~~~v~  341 (629)
                      ++..+.++|++|.++. ...+|+...+.++..+..        -.++||.+..||++.++-  +.  ++....+..+.  
T Consensus       157 Li~~atTsLnSKvvSq-~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gp--  233 (534)
T KOG0358|consen  157 LIKSATTSLNSKVVSQ-YSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGP--  233 (534)
T ss_pred             HHHHHHhHhhHHHHHh-hccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCc--
Confidence            2222235677776643 345677777776665521        146799999999998873  11  22222222211  


Q ss_pred             EEEEcCeeEEEEeecC---C-CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCC-c------ccCCChHHHHH
Q psy14945        342 EHVLGEEKFTFVEECK---N-PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGA-V------VPGAGAFEVAA  408 (629)
Q Consensus       342 e~~i~~~~~~~~~~~~---~-~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~-V------V~GGG~~El~l  408 (629)
                       .++.+.++-++.=|-   . .....|++....++  .++|-..-+-..   ++..-+.++ |      +.--...++++
T Consensus       234 -triekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~m---cKkIKk~gcnvLliQKSILRdavsDLAl  309 (534)
T KOG0358|consen  234 -TRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNM---CKKIKKAGCNVLLIQKSILRDAVSDLAL  309 (534)
T ss_pred             -chhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHH---HHHHHhcCCeEEEEeHHHHHHHHHHHHH
Confidence             113344444333121   1 13456676665532  233222222222   222221111 1      11123478888


Q ss_pred             HHHHHhhhh-hcCcchHHHHHHHHHHHhhhh-----HHHHHhcCCChHHHHHHHHHhhcC-----CC----Cc--eEEEE
Q psy14945        409 WHALQNYKN-TVKGKSRLGIQAYAEALLIIP-----KTIAVNSGFDAQDTLVKLQEACGE-----AP----GV--AVGVD  471 (629)
Q Consensus       409 ~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip-----~~L~~NaG~d~~~vl~~L~~~~~~-----~~----~~--~~Gid  471 (629)
                      | ||.+.+. -+++.++..++.+|+++..-|     ..-+++.|+-  ++.++......+     .|    .+  .+-++
T Consensus       310 H-fL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~a--dlveE~~~~G~gkivk~tg~~n~g~tvsil~R  386 (534)
T KOG0358|consen  310 H-FLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSA--DLVEETDSSGEGKIVKITGIQNAGRTVSILLR  386 (534)
T ss_pred             H-HHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcc--hhhhhcccCCCccEEEEEEeecCCCceEEEEe
Confidence            6 9988874 567778999999999877655     3334444432  112222111000     00    11  23357


Q ss_pred             eccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhH
Q psy14945        472 VNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVE  551 (629)
Q Consensus       472 ~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~  551 (629)
                      +.+.-++++.+|+++|++||.+...+       .+.+++|||+.| ++++..|.+++....|.+.|+.+           
T Consensus       387 Gsn~lvleEaeRSlhDALCVirCLvk-------~r~li~GGGapE-ieia~~L~~~a~t~eG~~~yc~r-----------  447 (534)
T KOG0358|consen  387 GSNKLVLEEAERSLHDALCVIRCLVK-------KRALIAGGGAPE-IEIALRLSALARTLEGVEAYCWR-----------  447 (534)
T ss_pred             cCchhhhHHHhhhhhhhhHHHHhhhh-------ccceecCCCCcc-hHHHHHHHHHHhhhccchhHHHH-----------
Confidence            77888999999999999999999887       999999999999 99999999999999999999998           


Q ss_pred             HHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        552 RELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       552 ~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                             +||+|||+||.+||||||++|+.++++||+.|++ |+.++|||++.|.+.||.+..|+.|+.|..++|++
T Consensus       448 -------afA~AlEvIP~tLAeNAGLnpI~~VtELRn~haq-ge~~aGInVRkg~~tni~ee~VvQPllVs~Saitl  516 (534)
T KOG0358|consen  448 -------AFADALEVIPYTLAENAGLNPIATVTELRNRHAQ-GEKNAGINVRKGGITNILEENVVQPLLVSISAITL  516 (534)
T ss_pred             -------HHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhc-CCcccceeeecccchhhHHHhcccceeeeHHHHHH
Confidence                   6889999999999999999999999999999988 78999999999999999999999999999999874

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=100.00  E-value=3.9e-37  Score=346.03  Aligned_cols=369  Identities=19%  Similarity=0.242  Sum_probs=259.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh---c-c-c------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL---K-M-H------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~---~-~-~------  271 (629)
                      ..||.++|+++.++.|++++|||||||+.++++||++|+.|++++                   .+   . + .      
T Consensus        78 ~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~  157 (533)
T PTZ00212         78 LDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKF  157 (533)
T ss_pred             CcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhh
Confidence            469999999999999999999999999999999999999999871                   00   0 0 0      


Q ss_pred             -cccCccccccccccCCCHHHHHHHHHhCcEEEeccc---hhhHHHHHHHhCCccccccc--c--cCcC-CCcccceEEE
Q psy14945        272 -KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK---RRNMERLSLACGGTAMNSVE--G--LEPA-HLGYAGSVFE  342 (629)
Q Consensus       272 -~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~---~~dl~rIak~tGg~i~~s~~--~--l~~~-~lG~~~~v~e  342 (629)
                       ..+..++.+++++| +.....++|++.++.++..+.   ..+..++.+..|+++.+|.-  .  ++.. ..+..     
T Consensus       158 ~~~l~~va~t~l~sk-~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~-----  231 (533)
T PTZ00212        158 KEDLLNIARTTLSSK-LLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQP-----  231 (533)
T ss_pred             HHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCCCC-----
Confidence             11122333456666 334455677777776665553   22556888999999998852  1  2211 11222     


Q ss_pred             EEEcCeeEEEEeecC----CC--ccEEEEecCCCccC-HHHHH-HHHHhhHHHHHHHhhCC--CcccCCChHHHHHHHHH
Q psy14945        343 HVLGEEKFTFVEECK----NP--QSVTILLKGPNKHT-LAQTK-DAVRDGLRAIKNTIDDG--AVVPGAGAFEVAAWHAL  412 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~----~~--~~~TIll~g~~~~~-l~e~~-r~i~dal~vv~~~~~~~--~VV~GGG~~El~l~~~L  412 (629)
                      ..+.+.+++++. |+    .+  ...++.+..+.+.. +++.+ +.+.+....+   ...+  .++..+|..+.+++ +|
T Consensus       232 ~~i~n~kIll~~-~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~I---i~~gv~vvv~~~~I~d~a~~-~L  306 (533)
T PTZ00212        232 KRLENCKILVAN-TPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKI---LAHGCNVFINRQLIYNYPEQ-LF  306 (533)
T ss_pred             ccccCCcEEEEe-CCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH---HhcCCeEEEeCCCccHHHHH-HH
Confidence            235578888776 43    11  25677777776531 22222 3333333323   2222  36778888888885 88


Q ss_pred             Hhhhh-hcCcchHHHHHHHHHHHhhhhHHH-----HHhcCCChHHHHHHHHHh---hc-CC-CC--ceEEEEeccCCCCC
Q psy14945        413 QNYKN-TVKGKSRLGIQAYAEALLIIPKTI-----AVNSGFDAQDTLVKLQEA---CG-EA-PG--VAVGVDVNSGEVLN  479 (629)
Q Consensus       413 ~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L-----~~NaG~d~~~vl~~L~~~---~~-~~-~~--~~~Gid~~t~~i~d  479 (629)
                      .+++. .+....+++++++|++....+-.-     ....|.........+...   .. +. ..  .++-+++.|...++
T Consensus       307 ~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~  386 (533)
T PTZ00212        307 AEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILD  386 (533)
T ss_pred             HHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHH
Confidence            87764 444456788999888865533110     111222100000000000   00 00 01  23445777889999


Q ss_pred             CCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhc
Q psy14945        480 PTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLA  559 (629)
Q Consensus       480 ~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~  559 (629)
                      +.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.+++++++++                  +
T Consensus       387 E~er~i~DAl~vv~~~i~-------~~~vVpGGGa~e-~~ls~~L~~~~~~~~~~~~~~i~------------------~  440 (533)
T PTZ00212        387 EAERSLHDALCVLSQTVK-------DTRVVLGGGCSE-MLMANAVEELAKKVEGKKSLAIE------------------A  440 (533)
T ss_pred             HHHHHHHHHHHHHHHHhh-------CCCEeeCCCHHH-HHHHHHHHHHHhhCCCHHHHHHH------------------H
Confidence            999999999999999997       999999999999 99999999999888999999998                  5


Q ss_pred             cCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        560 EPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       560 ~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      |++||++||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|.++||.+.|||||+.||+|+|++
T Consensus       441 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~-~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~  508 (533)
T PTZ00212        441 FAKALRQIPTIIADNGGYDSAELVSKLRAEHYK-GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCS  508 (533)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCccceeccCCcccchhhccceecHHHHHHHHHH
Confidence            777888899999999999999999999999987 56789999999999999999999999999999974

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=100.00  E-value=1.1e-36  Score=341.48  Aligned_cols=358  Identities=19%  Similarity=0.257  Sum_probs=257.6

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh---c-c-c------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL---K-M-H------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~---~-~-~------  271 (629)
                      ..||.++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+   . + +      
T Consensus        66 ~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~  145 (517)
T cd03336          66 VDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAF  145 (517)
T ss_pred             CcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence            479999999999999999999999999999999999999999871                   00   0 0 0      


Q ss_pred             -cccCccccccccccCCCHHHHHHHHHhCcEEEeccc---hhhHHHHHHHhCCccccccc--c--cCcCC-CcccceEEE
Q psy14945        272 -KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK---RRNMERLSLACGGTAMNSVE--G--LEPAH-LGYAGSVFE  342 (629)
Q Consensus       272 -~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~---~~dl~rIak~tGg~i~~s~~--~--l~~~~-lG~~~~v~e  342 (629)
                       ..+..++.+++++|.++ ...++|++..+.++..+.   ..+..++.+..|+++.+|..  .  ++... .+..     
T Consensus       146 ~~~l~~ia~t~lssk~~~-~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~-----  219 (517)
T cd03336         146 REDLLNIARTTLSSKILT-QDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQP-----  219 (517)
T ss_pred             HHHHHHHHHhhccccccc-hhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCC-----
Confidence             01122333456666432 233445555555554442   22567889999999998852  1  22221 2222     


Q ss_pred             EEEcCeeEEEEeecC----CC--ccEEEEecCCCcc-CHHHHH-HHHHhhHHHHHHHhhCC--CcccCCChHHHHHHHHH
Q psy14945        343 HVLGEEKFTFVEECK----NP--QSVTILLKGPNKH-TLAQTK-DAVRDGLRAIKNTIDDG--AVVPGAGAFEVAAWHAL  412 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~----~~--~~~TIll~g~~~~-~l~e~~-r~i~dal~vv~~~~~~~--~VV~GGG~~El~l~~~L  412 (629)
                      ..+.+.+++++. |+    .+  ...++.+..+.+. .+.+.+ +.+.+....+   ...+  .++..++..+.+.+ ||
T Consensus       220 ~~~~n~kIli~~-~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I---~~~gv~~v~~~~~I~~~~~~-~l  294 (517)
T cd03336         220 KRIENAKILIAN-TPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKI---LKHGINCFINRQLIYNYPEQ-LF  294 (517)
T ss_pred             CeeccccEEEEe-cCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH---HhcCCeEEEeCCCccHHHHH-HH
Confidence            235578888876 43    22  2578888887654 222222 3333333333   3332  46777788888885 88


Q ss_pred             Hhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-----------------C---C--ceE
Q psy14945        413 QNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-----------------P---G--VAV  468 (629)
Q Consensus       413 ~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-----------------~---~--~~~  468 (629)
                      .+++. .+....+.+++++|++....+           +..++.+...+.| +                 +   .  .++
T Consensus       295 ~~~~I~av~~v~~~~L~rIa~~tGa~i-----------i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI  363 (517)
T cd03336         295 ADAGIMAIEHADFDGVERLALVTGGEI-----------ASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTI  363 (517)
T ss_pred             HHCCcEEEecCCHHHHHHHHHHhCCEE-----------ecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEE
Confidence            87774 455556778999988865433           2222222111111 0                 1   1  134


Q ss_pred             EEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhh
Q psy14945        469 GVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRT  548 (629)
Q Consensus       469 Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~  548 (629)
                      -+++.|..++++.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++        
T Consensus       364 ~lrG~t~~~l~E~er~i~Dal~~~~~~i~-------~~~vvpGGGa~e-~~ls~~l~~~~~~~~~~~~~~i~--------  427 (517)
T cd03336         364 VLRGASQQILDEAERSLHDALCVLAQTVK-------DTRVVLGGGCSE-MLMAKAVEELAKKTPGKKSLAIE--------  427 (517)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHHHHHh-------CCCEEeCCCHHH-HHHHHHHHHHhhhCCCHHHHHHH--------
Confidence            45777899999999999999999999997       999999999999 99999999999888999999998        


Q ss_pred             hhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        549 KVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       549 ~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                                +|++||++||++||+|||+|+.+++++|++.|++ ++.++|+|+.+|+++||.+.|||||+.||+|+|++
T Consensus       428 ----------~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~  496 (517)
T cd03336         428 ----------AFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN-GNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLS  496 (517)
T ss_pred             ----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCceeeecCCCCccchhhcCceecHHHHHHHHHH
Confidence                      5778888899999999999999999999999977 56789999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=100.00  E-value=2.2e-36  Score=339.87  Aligned_cols=361  Identities=17%  Similarity=0.180  Sum_probs=263.5

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh----cc-c------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL----KM-H------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~----~~-~------  271 (629)
                      ..||+++|+++.++.|++++|||||+|+.++++||++|..|++++                   .+    .+ .      
T Consensus        74 ~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~  153 (526)
T cd03339          74 VDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNK  153 (526)
T ss_pred             ccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccH
Confidence            469999999999999999999999999999999999999999861                   00    00 0      


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccc-----h--hhHHHHHHHhCCccccccc--c--cCcCC--Ccccc
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-----R--RNMERLSLACGGTAMNSVE--G--LEPAH--LGYAG  338 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-----~--~dl~rIak~tGg~i~~s~~--~--l~~~~--lG~~~  338 (629)
                      +.+.-++.+++++| +.....+.|++.++.++..+.     .  .++++|.++.|+++.+|..  .  ++...  -+..+
T Consensus       154 ~~l~~ia~tsl~sk-~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~  232 (526)
T cd03339         154 EPLIQTAMTSLGSK-IVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPK  232 (526)
T ss_pred             HHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCc
Confidence            01122333556665 445556777777777665442     1  2677889999999999842  1  22211  12232


Q ss_pred             eEEEEEEcCeeEEEEeecC--C---CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECK--N---PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~--~---~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                           .+.+.++.++. |+  .   ....++.+..+.++  ..+.-+..+...+..+.... -+.|+...+..+++++ |
T Consensus       233 -----~~~n~kI~ll~-~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g-~~lvi~~~~I~~~al~-~  304 (526)
T cd03339         233 -----EVKDAKIAILT-CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAG-ANLVICQWGFDDEANH-L  304 (526)
T ss_pred             -----eecCCCEEEEE-ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEeCCCCCHHHHH-H
Confidence                 23477777775 22  1   14567777776543  33333455555555554332 2457888999999996 7


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC----------------------CCC---
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE----------------------APG---  465 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~----------------------~~~---  465 (629)
                      |.+++. .+....+..++++|++....+           +..+..+...+.|                      .++   
T Consensus       305 L~~~~I~av~~v~~~~LerIa~~tGa~i-----------i~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~  373 (526)
T cd03339         305 LLQNGLPAVRWVGGVEIELIAIATGGRI-----------VPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKA  373 (526)
T ss_pred             HHHCCCEEEEeCCHHHHHHHHHHhCCEE-----------ecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCE
Confidence            776664 444456777888888855433           2222222221111                      011   


Q ss_pred             ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q psy14945        466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTS  545 (629)
Q Consensus       466 ~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~a  545 (629)
                      .++-+++.|...+++.++.+.|++++.+++++       ++++|||||++| ++++..|++++...++++|++++     
T Consensus       374 ~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~-------~~~vvpGGGa~e-~~ls~~l~~~~~~~~~~~~~~~~-----  440 (526)
T cd03339         374 VTIFIRGGNKMIIEEAKRSLHDALCVVRNLIR-------DNRIVYGGGAAE-ISCSLAVEKAADKCSGIEQYAMR-----  440 (526)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHHhh-------CCCEEeCCCHHH-HHHHHHHHHHhccCCCHHHHHHH-----
Confidence            13345777889999999999999999999997       999999999999 99999999998888999999998     


Q ss_pred             hhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHH
Q psy14945        546 LRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  625 (629)
Q Consensus       546 l~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~  625 (629)
                                   +|++||++||++||+|||+|+.+++++|+..|.+++..++|+|+.+|.+.||.+.|||||+.||+++
T Consensus       441 -------------~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~  507 (526)
T cd03339         441 -------------AFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQ  507 (526)
T ss_pred             -------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHH
Confidence                         5778888899999999999999999999999975335689999999999999999999999999999


Q ss_pred             hhc
Q psy14945        626 INS  628 (629)
Q Consensus       626 i~~  628 (629)
                      |+.
T Consensus       508 l~~  510 (526)
T cd03339         508 ILL  510 (526)
T ss_pred             HHH
Confidence            974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=100.00  E-value=2.4e-36  Score=339.28  Aligned_cols=372  Identities=17%  Similarity=0.193  Sum_probs=265.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc------c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM------H  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~------~  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+     ..      +
T Consensus        78 ~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~  157 (532)
T TIGR02343        78 VDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNK  157 (532)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCH
Confidence            479999999999999999999999999999999999999999871                   00     00      0


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccc-------hhhHHHHHHHhCCccccccc--c--cCcC--CCcccc
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-------RRNMERLSLACGGTAMNSVE--G--LEPA--HLGYAG  338 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-------~~dl~rIak~tGg~i~~s~~--~--l~~~--~lG~~~  338 (629)
                      ..+.-++.+++++| +.....+.|.+.++.++..+.       ..+++++.+..|+++.+|..  .  ++..  ..+..+
T Consensus       158 ~~l~~ia~t~l~sK-~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~  236 (532)
T TIGR02343       158 EPLIQAAKTSLGSK-IVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPK  236 (532)
T ss_pred             HHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCe
Confidence            11222333556665 445556677777666665442       12678899999999998831  1  2222  113333


Q ss_pred             eEEEEEEcCeeEEEEeecC----CC-ccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECK----NP-QSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~----~~-~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                      .     +.+.+++++. |+    .+ ...++.+..+.++  +.+.-+..+...+..+.... -+.|+..+|..+.+++ |
T Consensus       237 ~-----~~n~kI~l~~-~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g-~~lvi~~~~I~~~al~-~  308 (532)
T TIGR02343       237 E-----VKDAKIAILT-CPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSG-ANIVICQWGFDDEANH-L  308 (532)
T ss_pred             e-----ecCCcEEEEE-eeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEeCCCccHHHHH-H
Confidence            2     3467777775 22    11 4567778887644  33333455555555554432 2557888899999986 8


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHH-----HHHhcCCChHHHHHHH-----HHhhc-CCCC---ceEEEEeccCC
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKT-----IAVNSGFDAQDTLVKL-----QEACG-EAPG---VAVGVDVNSGE  476 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~d~~~vl~~L-----~~~~~-~~~~---~~~Gid~~t~~  476 (629)
                      |.+++. .+....++.++++|++....+-.     -.+..|.........+     +..+. +.++   .++-+++.|..
T Consensus       309 L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~  388 (532)
T TIGR02343       309 LLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKM  388 (532)
T ss_pred             HHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHH
Confidence            877764 45555778899998886544311     0111232110000000     00000 0011   13446778899


Q ss_pred             CCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHh
Q psy14945        477 VLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELAD  556 (629)
Q Consensus       477 i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  556 (629)
                      .+++.+|.+.|++++.+++++       ++++|||||++| +++++.|++++.+.++.+|++++                
T Consensus       389 ~l~E~er~l~DAl~~v~~~i~-------~~~vvpGGGa~e-~~ls~~l~~~~~~~~~~~~~~i~----------------  444 (532)
T TIGR02343       389 IIEEAKRSIHDALCVVRNLIK-------NSRIVYGGGAAE-ISCSLAVSQEADKYSGVEQYAIR----------------  444 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------CCCEEeCcCHHH-HHHHHHHHHHhccCCcHHHHHHH----------------
Confidence            999999999999999999997       999999999999 99999999998888999999998                


Q ss_pred             hhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        557 LLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       557 ~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                        +|++|||+||++||+|||+|+.+++++|++.|++.+..++|+|+.+|.+.||.+.|||||+.||+++|+.
T Consensus       445 --~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~  514 (532)
T TIGR02343       445 --AFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQL  514 (532)
T ss_pred             --HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHH
Confidence              5788888999999999999999999999999975235689999999999999999999999999999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=100.00  E-value=1.5e-36  Score=340.07  Aligned_cols=370  Identities=18%  Similarity=0.229  Sum_probs=259.6

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----ccc------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KMH------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~~------  271 (629)
                      ..||.++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+     ...      
T Consensus        67 i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~  146 (519)
T TIGR02341        67 VDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKF  146 (519)
T ss_pred             CcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence            479999999999999999999999999999999999999999871                   00     000      


Q ss_pred             -cccCccccccccccCCCHHHHHHHHHhCcEEEeccch---hhHHHHHHHhCCccccccc--c--cCcCC-CcccceEEE
Q psy14945        272 -KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR---RNMERLSLACGGTAMNSVE--G--LEPAH-LGYAGSVFE  342 (629)
Q Consensus       272 -~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~---~dl~rIak~tGg~i~~s~~--~--l~~~~-lG~~~~v~e  342 (629)
                       ..+..++.+++++| +.....++|.+.++.++..+..   .+..++.+..|+++.++.-  .  ++... .+..     
T Consensus       147 ~~~L~~ia~t~l~sk-i~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~-----  220 (519)
T TIGR02341       147 RDDLLNIARTTLSSK-ILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQP-----  220 (519)
T ss_pred             HHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCCCCc-----
Confidence             01112223455554 4455567777777777666532   2456778888999998852  1  22211 1222     


Q ss_pred             EEEcCeeEEEEeecC----CCc--cEEEEecCCCcc-CHHHHH-HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHh
Q psy14945        343 HVLGEEKFTFVEECK----NPQ--SVTILLKGPNKH-TLAQTK-DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN  414 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~----~~~--~~TIll~g~~~~-~l~e~~-r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~  414 (629)
                      ..+.+.++++++ |+    .+.  ..++.+..+++. .+.+.+ +.+.+.+..+.+..- ..++..++..+.+++ ||.+
T Consensus       221 ~~~~n~~Ili~~-~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~-~~v~~~~~I~~~~~~-~l~~  297 (519)
T TIGR02341       221 KRIENAKILIAN-TPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNI-NCFINRQLIYNYPEQ-LFAD  297 (519)
T ss_pred             eeeccccEEEEe-cCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC-cEEEECCcCCHHHHH-HHHH
Confidence            235578888776 33    111  567888666543 233333 333333333322211 236777788888885 8877


Q ss_pred             hhh-hcCcchHHHHHHHHHHHhhhhHHH-----HHhcCCCh-HHHHHHH---HHhhc-CC-CC--ceEEEEeccCCCCCC
Q psy14945        415 YKN-TVKGKSRLGIQAYAEALLIIPKTI-----AVNSGFDA-QDTLVKL---QEACG-EA-PG--VAVGVDVNSGEVLNP  480 (629)
Q Consensus       415 ~~~-~i~~~~k~~i~~fa~ALe~ip~~L-----~~NaG~d~-~~vl~~L---~~~~~-~~-~~--~~~Gid~~t~~i~d~  480 (629)
                      ++. .+....+..++++|++....+-.-     .+..|+.. ++. ..+   +-.+. +. ..  .++-+++.|..++++
T Consensus       298 ~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~-~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E  376 (519)
T TIGR02341       298 AGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEE-IMIGEDKLLKFSGVKLGEACTIVLRGATQQILDE  376 (519)
T ss_pred             CCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEE-EEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHH
Confidence            764 444456778999988865433110     01123211 100 000   00000 00 01  234457788999999


Q ss_pred             CcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhcc
Q psy14945        481 TSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAE  560 (629)
Q Consensus       481 ~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~  560 (629)
                      .++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++                  +|
T Consensus       377 ~er~i~Dal~~~~~~~~-------~~~vvpGGGa~e-~~ls~~l~~~~~~~~~~~~~~i~------------------~~  430 (519)
T TIGR02341       377 SERSLHDALCVLSQTVK-------ESRTVLGGGCSE-MLMSKAVAVEAQKVPGKEALAVE------------------AF  430 (519)
T ss_pred             HHHHHHHHHHHHHHHHh-------CCCEEeCCCHHH-HHHHHHHHHHhhcCCChHHHHHH------------------HH
Confidence            99999999999999997       999999999999 99999999998888999999998                  57


Q ss_pred             CCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        561 PNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       561 a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      ++||++||++||+|||+|+.+++++|++.|+. +..++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       431 a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~  497 (519)
T TIGR02341       431 ARALRQLPTIIADNAGFDSAELVAQLRAAHYN-GNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSS  497 (519)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCCccceecCCCcccchhhccceEcHHHHHHHHHH
Confidence            78888899999999999999999999999977 56789999999999999999999999999999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK14104 chaperonin GroEL; Provisional

Probab=100.00  E-value=3.9e-35  Score=329.20  Aligned_cols=305  Identities=21%  Similarity=0.276  Sum_probs=249.0

Q ss_pred             hhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCc-cceEEEEeEEEeccCCCCCC-------cccccCee
Q psy14945        119 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD-VCIILVKGVVLNHGARHPDM-------PKSVKNAH  190 (629)
Q Consensus       119 ~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~-~dS~li~Gvv~~~~~~~~~m-------~~~i~n~k  190 (629)
                      ++++.++++++.. .|..             +.+.+..  +++. .++++++|++|++++.+|+|       +.+++||+
T Consensus       156 ~~i~~lv~~Av~~-vg~~-------------g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~  219 (546)
T PRK14104        156 AEIGKFLADAMKK-VGNE-------------GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAY  219 (546)
T ss_pred             hHHHHHHHHHHHH-hccC-------------CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcE
Confidence            5577777777762 2321             1233322  4555 58999999999999999976       67799999


Q ss_pred             EEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc
Q psy14945        191 ILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM  270 (629)
Q Consensus       191 Ill~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~  270 (629)
                      |++++..+..                      .   ..        +...        +..+.             ..+.
T Consensus       220 Ilv~d~~i~~----------------------~---~~--------i~~~--------l~~i~-------------~~g~  245 (546)
T PRK14104        220 ILINEKKLSS----------------------L---NE--------LLPL--------LEAVV-------------QTGK  245 (546)
T ss_pred             EEEehhhhcC----------------------H---HH--------HHHH--------HHHHH-------------HhCc
Confidence            9999855421                      1   11        1122        33333             1221


Q ss_pred             ccccCccccccccccCCCHHHHHHHHH------hCcEEEeccc-----hhhHHHHHHHhCCccccc-----ccccCcCCC
Q psy14945        271 HKFAPDCSTSDRYRTGIDPQSLDLFAR------EGIIALRRAK-----RRNMERLSLACGGTAMNS-----VEGLEPAHL  334 (629)
Q Consensus       271 ~~~l~v~~~~~l~~k~i~~~~~~~la~------~~I~vv~~v~-----~~dl~rIak~tGg~i~~s-----~~~l~~~~l  334 (629)
                          .+    ++++++|++.++++|..      .+|.++++.+     +.+++|||++|||+++++     +++++...+
T Consensus       246 ----~l----vI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~L  317 (546)
T PRK14104        246 ----PL----VIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQML  317 (546)
T ss_pred             ----CE----EEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHC
Confidence                11    35799999999999985      6789997765     679999999999999999     778888889


Q ss_pred             cccceEEEEEEcCeeEEEEeecCCC-----------------------------------ccEEEEecCCCccCHHHHHH
Q psy14945        335 GYAGSVFEHVLGEEKFTFVEECKNP-----------------------------------QSVTILLKGPNKHTLAQTKD  379 (629)
Q Consensus       335 G~~~~v~e~~i~~~~~~~~~~~~~~-----------------------------------~~~TIll~g~~~~~l~e~~r  379 (629)
                      |+|..++   +++++++++.+|.++                                   ..+||+|||+++..++|.++
T Consensus       318 G~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r  394 (546)
T PRK14104        318 GRAKKVM---IDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKD  394 (546)
T ss_pred             CceeEEE---EcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHH
Confidence            9999887   577899999888764                                   78999999999999999999


Q ss_pred             HHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHh
Q psy14945        380 AVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA  459 (629)
Q Consensus       380 ~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~  459 (629)
                      +++||+++++++++++ +|||||++|++++.+|+++. ...+.+++++++|++||+.||++|++|+|+|+.+++.+|+..
T Consensus       395 ~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~  472 (546)
T PRK14104        395 RVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEK  472 (546)
T ss_pred             HHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhc
Confidence            9999999999999998 99999999999999999874 346789999999999999999999999999999999999764


Q ss_pred             hcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        460 CGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       460 ~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      +    ..++|+|+.++++.|+.+.||+||+.||+++|+.|+++|...+.++
T Consensus       473 ~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id  519 (546)
T PRK14104        473 E----QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTE  519 (546)
T ss_pred             C----CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    2468999999999999999999999999999999999888776654

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=100.00  E-value=3.2e-36  Score=338.58  Aligned_cols=371  Identities=17%  Similarity=0.234  Sum_probs=258.3

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc-----c----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK-----M----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~-----~----~~~  273 (629)
                      ..||+++|+++.++.|++++|||||+|+.++++||++|..|++.+                   .++     .    +..
T Consensus        67 ~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~  146 (525)
T TIGR02344        67 VAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAA  146 (525)
T ss_pred             CCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence            469999999999999999999999999999999999999999871                   000     0    000


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccc--------hhhH---HHHHHHhCCccccccc--c--cCcCCC--cc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK--------RRNM---ERLSLACGGTAMNSVE--G--LEPAHL--GY  336 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~--------~~dl---~rIak~tGg~i~~s~~--~--l~~~~l--G~  336 (629)
                      +.-++.+.+++|.++. ..+.|++..+.++..+.        ..|+   +++.+..|+++.+|..  .  ++....  +.
T Consensus       147 l~~i~~t~l~sk~~~~-~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m  225 (525)
T TIGR02344       147 MLKLIQSCIGTKFVSR-WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKM  225 (525)
T ss_pred             HHHHHHHhhccccchh-HHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCC
Confidence            1112234556665532 23444444444443332        1132   4577888999988742  1  222111  11


Q ss_pred             cceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHH
Q psy14945        337 AGSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAW  409 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~  409 (629)
                      .     ..+.+.++++++ |+     .....++.+..+.+.  .++.-++.+.+.+..+.. ..-..|++.++..+++++
T Consensus       226 ~-----~~~~n~kIlll~-~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~-~~~~vIi~~k~I~dla~~  298 (525)
T TIGR02344       226 R-----RYIENPRIVLLD-CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIA-VKPDLVITEKGVSDLAQH  298 (525)
T ss_pred             c-----cccCCCCEEEEe-cccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEeCCCccHHHHH
Confidence            2     224578888876 33     124577888777643  445444566666555543 222356777888887775


Q ss_pred             HHHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-----HHHhcCC-ChHHHHHHHHH---hhc-CCCC---ceEEEEeccC
Q psy14945        410 HALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-----IAVNSGF-DAQDTLVKLQE---ACG-EAPG---VAVGVDVNSG  475 (629)
Q Consensus       410 ~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~-d~~~vl~~L~~---~~~-~~~~---~~~Gid~~t~  475 (629)
                       ||.+++. .+....+..++++|++....+-.     -.+..|. .......++..   .+. +.++   .++-+++.|.
T Consensus       299 -~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~  377 (525)
T TIGR02344       299 -YLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASK  377 (525)
T ss_pred             -HHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCH
Confidence             8877764 45556788999999886544311     0111232 11000000000   000 0011   1344677788


Q ss_pred             CCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHH
Q psy14945        476 EVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELA  555 (629)
Q Consensus       476 ~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  555 (629)
                      ..+++.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++               
T Consensus       378 ~~l~E~er~l~DAl~~vk~~~~-------~~~vvpGGGa~e-~~ls~~l~~~~~~~~~~~~~~~~---------------  434 (525)
T TIGR02344       378 DVLNEIERNLQDAMAVARNVLL-------EPKLLPGGGATE-MAVSVYLAKKASKLEGVQQWPYR---------------  434 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------CCCcccCCCHHH-HHHHHHHHHHHhcCCCHHHHHHH---------------
Confidence            9999999999999999999997       999999999999 99999999998889999999998               


Q ss_pred             hhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCC-CceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        556 DLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAP-GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       556 ~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~-~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                         +|++||+.||++||+|||+|+.+++++|+..|++ + +.++|+|+.+|++.||.+.|||||+.||+++|++
T Consensus       435 ---~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~  504 (525)
T TIGR02344       435 ---AVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQ-EGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKT  504 (525)
T ss_pred             ---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCCCeEeEECCCCccccchhccceecHHHHHHHHHH
Confidence               5778888899999999999999999999999976 4 5689999999999999999999999999999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=100.00  E-value=6.1e-36  Score=335.52  Aligned_cols=364  Identities=26%  Similarity=0.318  Sum_probs=257.0

Q ss_pred             eccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----c---c--c
Q psy14945        221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----K---M--H  271 (629)
Q Consensus       221 ~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~---~--~  271 (629)
                      +.+||+++|+++.++.|++++|||||||+.++++||++|..||+++                   .+     .   .  +
T Consensus        66 ~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~  145 (531)
T TIGR02347        66 QIQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDR  145 (531)
T ss_pred             cccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCH
Confidence            3579999999999999999999999999999999999999999871                   00     0   0  0


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccch----hh--HHHHHHHhCCccccccc--c--cCcCCCcccceEE
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR----RN--MERLSLACGGTAMNSVE--G--LEPAHLGYAGSVF  341 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~----~d--l~rIak~tGg~i~~s~~--~--l~~~~lG~~~~v~  341 (629)
                      ..+..++.+++++|.++ ...++|.+..+.++..+..    .+  +.++.+..|+++.++..  .  ++... -...  .
T Consensus       146 ~~l~~ia~tsl~sK~~~-~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~-~~~~--~  221 (531)
T TIGR02347       146 ELLLNVARTSLRTKLPI-DLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGA-RHPD--M  221 (531)
T ss_pred             HHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCc-CCCC--C
Confidence            00112223455565442 2234444444444444421    23  34555788888887742  1  22111 1111  1


Q ss_pred             EEEEcCeeEEEEeecC----C-CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHh--------hCC-CcccCCChHH
Q psy14945        342 EHVLGEEKFTFVEECK----N-PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTI--------DDG-AVVPGAGAFE  405 (629)
Q Consensus       342 e~~i~~~~~~~~~~~~----~-~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~--------~~~-~VV~GGG~~E  405 (629)
                      ...+.+.+++++. |+    . ....++.+..+++.  ..+.-++.+.+.+..+..+.        ..+ .|+...|..+
T Consensus       222 ~~~~~n~~Ill~~-~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~  300 (531)
T TIGR02347       222 PRRVKNAYILTCN-VSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDP  300 (531)
T ss_pred             ceeccCceEEEEe-CCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccH
Confidence            2235577888776 33    1 35677888777754  33333344555554444332        112 4667788888


Q ss_pred             HHHHHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC--------------------CC
Q psy14945        406 VAAWHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE--------------------AP  464 (629)
Q Consensus       406 l~l~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~--------------------~~  464 (629)
                      .+++ ||.+++. .+....+..++++|++....+           +..+..+...+.|                    .+
T Consensus       301 ~a~~-~L~~~~I~~i~rv~~~~le~ia~~tGa~~-----------i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~  368 (531)
T TIGR02347       301 PSLD-LLAKEGIMALRRAKRRNMERLTLACGGEA-----------LNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVK  368 (531)
T ss_pred             HHHH-HHHHCCceEEccCCHHHHHHHHHHhCCEE-----------ecccccCCccccccceEEEEEEECCeEEEEEEcCC
Confidence            8886 8888764 444456888999998865443           2222222221111                    01


Q ss_pred             C---ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHH
Q psy14945        465 G---VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDV  541 (629)
Q Consensus       465 ~---~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~  541 (629)
                      +   .++-+++.|..++++.++.+.|++++.+++++       ++++|||||++| ++++..|++++...++++|++++ 
T Consensus       369 ~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~-------~~~vvpGGGa~E-~~ls~~l~~~~~~~~~~~~~~i~-  439 (531)
T TIGR02347       369 NPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIE-------DKCVVPGAGAFE-IAAYCHLKEEKKSVKGKAKLGVE-  439 (531)
T ss_pred             CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhh-------CCcEEeCCCHHH-HHHHHHHHHHhhcCCCHHHHHHH-
Confidence            1   13345777899999999999999999999997       999999999999 99999999998888999999998 


Q ss_pred             HHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHH
Q psy14945        542 ARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTV  621 (629)
Q Consensus       542 ~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~v  621 (629)
                                       +|++||++||++||+|||+|+.+++++|++.|.+ ++.++|+|+.+|.++||.+.|||||+.|
T Consensus       440 -----------------~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~-~~~~~Gid~~~g~~~d~~~~gV~Dp~~v  501 (531)
T TIGR02347       440 -----------------AFANALLVIPKTLAENSGLDAQDTLVKLEDEHDE-GGEVVGVDLETGEPIDPEIKGIWDNYRV  501 (531)
T ss_pred             -----------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-cCCceeeeccCCCccchhhccCEEcHHH
Confidence                             5778888899999999999999999999999976 5678999999999999999999999999


Q ss_pred             HHHHhhc
Q psy14945        622 KRQIINS  628 (629)
Q Consensus       622 K~~~i~~  628 (629)
                      |+|+|++
T Consensus       502 k~~al~~  508 (531)
T TIGR02347       502 KKQLIQS  508 (531)
T ss_pred             HHHHHHH
Confidence            9999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=100.00  E-value=7.1e-36  Score=337.20  Aligned_cols=287  Identities=20%  Similarity=0.249  Sum_probs=237.8

Q ss_pred             ecCCCccce-EEEEeEEEeccCCCC-------CCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHH
Q psy14945        157 EYEKSDVCI-ILVKGVVLNHGARHP-------DMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTAS  228 (629)
Q Consensus       157 i~Ggs~~dS-~li~Gvv~~~~~~~~-------~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~ak  228 (629)
                      .+|++..|+ ++++|++|++++.+|       .|+++++||+|+++++.|+.                      .+++..
T Consensus       232 ~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~----------------------~~~l~~  289 (600)
T PLN03167        232 EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITN----------------------ARDLIG  289 (600)
T ss_pred             ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCC----------------------HHHHHH
Confidence            369999997 999999999999999       68999999999999986631                      122222


Q ss_pred             HHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHH------HhCcEE
Q psy14945        229 LIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFA------REGIIA  302 (629)
Q Consensus       229 ll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la------~~~I~v  302 (629)
                      ++                   ..+.             ..+.    .+    ++.+++|++.++++|.      ..+|.+
T Consensus       290 ~l-------------------e~i~-------------~~g~----~l----vI~a~~I~~~aL~~L~~nkl~g~~~i~a  329 (600)
T PLN03167        290 IL-------------------EDAI-------------RGGY----PL----LIIAEDIEQEALATLVVNKLRGSLKIAA  329 (600)
T ss_pred             HH-------------------HHHH-------------HhCc----CE----EEEcCCCCHHHHHHHHHhhccccceEEE
Confidence            22                   1121             1111    11    3468899999999999      888999


Q ss_pred             Eeccc-----hhhHHHHHHHhCCcccc-----cccccCcCCCcccceEEEEE-----EcC--------eeEEEEeecCC-
Q psy14945        303 LRRAK-----RRNMERLSLACGGTAMN-----SVEGLEPAHLGYAGSVFEHV-----LGE--------EKFTFVEECKN-  358 (629)
Q Consensus       303 v~~v~-----~~dl~rIak~tGg~i~~-----s~~~l~~~~lG~~~~v~e~~-----i~~--------~~~~~~~~~~~-  358 (629)
                      +++.+     +.++++||++|||++++     ++.+++...+|+|+.+++.+     +++        +++.+|.+|.. 
T Consensus       330 Vk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~  409 (600)
T PLN03167        330 LKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEA  409 (600)
T ss_pred             EEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhc
Confidence            99885     66899999999999999     66778888899999999765     554        36666654430 


Q ss_pred             -----------------CccEEEE-ecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcC
Q psy14945        359 -----------------PQSVTIL-LKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVK  420 (629)
Q Consensus       359 -----------------~~~~TIl-l~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~  420 (629)
                                       +..++++ +||+++.+++|.+++++||+++++++++++ +|||||++|++++.+|++++..+.
T Consensus       410 ~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~  488 (600)
T PLN03167        410 AEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLE  488 (600)
T ss_pred             cCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCC
Confidence                             1246666 999999999999999999999999999999 999999999999999998877776


Q ss_pred             cchH-HHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhh
Q psy14945        421 GKSR-LGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSW  499 (629)
Q Consensus       421 ~~~k-~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a  499 (629)
                      +.++ .+++.+++||+.||++|++|+|+|+.+++.+|+..+    +.++|+|+.++++.|+.+.|||||+.||+++|+.|
T Consensus       489 ~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~----~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A  564 (600)
T PLN03167        489 NDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND----NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHA  564 (600)
T ss_pred             ChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC----CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHH
Confidence            6666 459999999999999999999999999999997432    35799999999999999999999999999999999


Q ss_pred             hhcCCCCeEEe
Q psy14945        500 IISGLHPRVIT  510 (629)
Q Consensus       500 ~e~a~~~~iV~  510 (629)
                      +++|...+.++
T Consensus       565 ~~~A~~iL~iD  575 (600)
T PLN03167        565 ASVAKTFLTSD  575 (600)
T ss_pred             HHHHHHHHHHH
Confidence            99888776654

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=100.00  E-value=1.2e-35  Score=333.67  Aligned_cols=360  Identities=18%  Similarity=0.241  Sum_probs=256.5

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH--------------------------hhcc-----
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV--------------------------NLKM-----  270 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~--------------------------~~~~-----  270 (629)
                      ..||+++|+++.++.|++++|||||+|+.++++||++|..|++.+                          ....     
T Consensus        67 ~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~  146 (522)
T cd03340          67 IVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEE  146 (522)
T ss_pred             ccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccc
Confidence            469999999999999999999999999999999999999999871                          0000     


Q ss_pred             -ccccCccccccccccCCCHHHHHHHHHhCcEEEeccc---hhhHHHHHHHhCCccccccc----ccCcCCC-----ccc
Q psy14945        271 -HKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK---RRNMERLSLACGGTAMNSVE----GLEPAHL-----GYA  337 (629)
Q Consensus       271 -~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~---~~dl~rIak~tGg~i~~s~~----~l~~~~l-----G~~  337 (629)
                       ++.+..++.+++++|.+. ...++|.+..+.++..+.   ..+.+++.+..|+++.+|..    .++....     ...
T Consensus       147 ~~~~l~~ia~t~l~sK~~~-~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~  225 (522)
T cd03340         147 QRELLEKCAATALNSKLIA-SEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQP  225 (522)
T ss_pred             cHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCC
Confidence             000112223455555442 233445555555554443   23567788889999998852    1222211     112


Q ss_pred             ceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        338 GSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                      +     .+.+.+++++. ++     .....++.+.++.++  ..+...+.+.+.+..+.... -..|+..+|..+.+++ 
T Consensus       226 ~-----~~~n~kIll~~-~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g-~~vvl~~~~i~d~a~~-  297 (522)
T cd03340         226 K-----KFKNPKILLLN-VELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSG-ANVVLSKLPIGDLATQ-  297 (522)
T ss_pred             c-----cccCCeEEEEe-CCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCcHHHHH-
Confidence            2     24577887776 32     123457777666543  22333344544444332221 1346778888888885 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-----------------C-----Cc
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-----------------P-----GV  466 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-----------------~-----~~  466 (629)
                      ||.+.+. .+....+..++++|++....+           +..+..+...+.| +                 +     ..
T Consensus       298 ~l~~~~I~~~~~v~~~~l~rIa~~tGa~i-----------i~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~  366 (522)
T cd03340         298 YFADRDIFCAGRVPEEDLKRVAQATGGSI-----------QTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTC  366 (522)
T ss_pred             HHHHCCcEEEEeCCHHHHHHHHHHHCCEE-----------eeccccCCccccccceEEEEEEECCEEEEEEECCCCCceE
Confidence            8888774 444456788999998865543           2222222211111 0                 0     12


Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|..++|+.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+..++++++++      
T Consensus       367 TIllrG~t~~~l~E~er~i~Dal~~~~~~i~-------~~~vvpGGG~~E-~~ls~~l~~~~~~~~~~~~~~~~------  432 (522)
T cd03340         367 TIILRGGAEQFIEEAERSLHDAIMIVRRAIK-------NDSVVAGGGAIE-MELSKYLRDYSRTIAGKQQLVIN------  432 (522)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEECcCHHH-HHHHHHHHHHhccCCCHHHHHHH------
Confidence            3446777888999999999999999999997       899999999999 99999999998888999999998      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCC-ceeeEecCCCcccccccCCccccHHHHHHH
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPG-VAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  625 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~-~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~  625 (629)
                                  +|++||++||++||+|||+|+.+++.+|++.|++ ++ .++|+|+.+|++.||.+.|||||+.||+|+
T Consensus       433 ------------~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~  499 (522)
T cd03340         433 ------------AFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQ-GGGKWYGVDINNEGIADNFEAFVWEPSLVKINA  499 (522)
T ss_pred             ------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCeeeeeCCCCcccchhhcCceEcHHHHHHH
Confidence                        5778888899999999999999999999999987 55 689999999999999999999999999999


Q ss_pred             hhc
Q psy14945        626 INS  628 (629)
Q Consensus       626 i~~  628 (629)
                      |++
T Consensus       500 i~~  502 (522)
T cd03340         500 LTA  502 (522)
T ss_pred             HHH
Confidence            974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=100.00  E-value=1.7e-35  Score=332.25  Aligned_cols=361  Identities=18%  Similarity=0.249  Sum_probs=259.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-------cc--ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-------KM--HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-------~~--~~~  273 (629)
                      ..||.++|+++.++.|++++|||||+|+.++++||++|..|++.+                   .+       +.  +..
T Consensus        67 ~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~  146 (519)
T TIGR02339        67 IEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDL  146 (519)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHH
Confidence            469999999999999999999999999999999999999999771                   00       00  011


Q ss_pred             cCccccccccccCCC----HHHHHHHHHhCcEEEecc--c--hh--hHHHHHHHhCCccccccc--c--cCcCC--Cccc
Q psy14945        274 APDCSTSDRYRTGID----PQSLDLFAREGIIALRRA--K--RR--NMERLSLACGGTAMNSVE--G--LEPAH--LGYA  337 (629)
Q Consensus       274 l~v~~~~~l~~k~i~----~~~~~~la~~~I~vv~~v--~--~~--dl~rIak~tGg~i~~s~~--~--l~~~~--lG~~  337 (629)
                      +..++.+++++|-++    +.+.++++++...+.+..  .  .+  +++++.+..|+++.+|..  .  ++...  -+..
T Consensus       147 L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~  226 (519)
T TIGR02339       147 LKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMP  226 (519)
T ss_pred             HHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCc
Confidence            122333455565442    334444444443332210  1  12  355677899999987742  1  22221  1112


Q ss_pred             ceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        338 GSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                           ..+.+.+++++. |+     .....++.+..+.+.  .++.-+..++..+..+.... -+.|+..++..+++++ 
T Consensus       227 -----~~i~n~kIlll~-~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g-~~lvi~~~~I~~~al~-  298 (519)
T TIGR02339       227 -----KRVKNAKIALLD-APLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAG-ANVVFCQKGIDDLAQH-  298 (519)
T ss_pred             -----cccCCCcEEEEe-ccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEECCCccHHHHH-
Confidence                 235578888876 33     225677888777644  33444455555555554332 2457888899999996 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------CC---c
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------PG---V  466 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~~---~  466 (629)
                      +|.+++. .+....+..++++|++....+           +..++.+...+.| +                   +.   .
T Consensus       299 ~L~~~gI~~v~~v~~~~L~rIa~~tGa~i-----------i~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~  367 (519)
T TIGR02339       299 YLAKAGILAVRRVKKSDIEKLARATGAKI-----------VSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAV  367 (519)
T ss_pred             HHHHCCCEEEecCCHHHHHHHHHHhCCEE-----------eCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEE
Confidence            7776664 455667889999998855433           2222222222222 0                   01   1


Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+++.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.+++++++++      
T Consensus       368 TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~-------~~~vvpGGGa~e-~~ls~~l~~~~~~~~~~~~~~~~------  433 (519)
T TIGR02339       368 TILLRGGTEHVVDELERSIQDALHVVASALE-------DGKVVAGGGAVE-IELALRLRSYARKIGGREQLAIE------  433 (519)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHhc-------CCCEeeCCCHHH-HHHHHHHHHHhhcCCCHHHHHHH------
Confidence            3345777889999999999999999999997       999999999999 99999999998888999999998      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++|||+||++||+|||+|+.+++++|++.|++ ++.++|+|+.+|++.||.+.|||||+.||+++|
T Consensus       434 ------------~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l  500 (519)
T TIGR02339       434 ------------AFADALEEIPRILAENAGLDPIDALVELRAKHEK-GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAI  500 (519)
T ss_pred             ------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-cCCceeEEcCCCCccchhhccceEcHHHHHHHH
Confidence                        5777888899999999999999999999999976 467899999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      +.
T Consensus       501 ~~  502 (519)
T TIGR02339       501 KS  502 (519)
T ss_pred             HH
Confidence            74

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=100.00  E-value=2.7e-35  Score=331.13  Aligned_cols=372  Identities=17%  Similarity=0.202  Sum_probs=258.1

Q ss_pred             eccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh----c-c-----c
Q psy14945        221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL----K-M-----H  271 (629)
Q Consensus       221 ~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~----~-~-----~  271 (629)
                      +.+||+++|+++.++.|++++|||||+++.++++||++|..|++++                   .+    . +     +
T Consensus        58 ~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~  137 (527)
T cd03335          58 EVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGK  137 (527)
T ss_pred             cccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCH
Confidence            3479999999999999999999999999999999999999999871                   00    0 0     0


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccc----------hhhHHHHHHHhCCcccccc--cc--cCcCC--Cc
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK----------RRNMERLSLACGGTAMNSV--EG--LEPAH--LG  335 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~----------~~dl~rIak~tGg~i~~s~--~~--l~~~~--lG  335 (629)
                      ..+..++.+++++|.++.. .++|++..+.++..+.          ..+.+++.+..|+++.++.  +.  ++...  .+
T Consensus       138 ~~l~~ia~tsl~sK~~~~~-~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~  216 (527)
T cd03335         138 ESLINVAKTSMSSKIIGAD-SDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQG  216 (527)
T ss_pred             HHHHHHHHHHhcccccchh-HHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCC
Confidence            0011122345556655332 3455555444444431          1145677788899888774  21  22211  12


Q ss_pred             ccceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHH
Q psy14945        336 YAGSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAA  408 (629)
Q Consensus       336 ~~~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l  408 (629)
                      ...     .+.+.+++++. ++     .....++.+..+.+.  ..+.-++.+...+..+.... -+.|+..+|..+.++
T Consensus       217 m~~-----~i~n~kIlll~-~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g-~~lvi~~k~I~d~al  289 (527)
T cd03335         217 MPT-----RVKNAKIACLD-FNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAG-ANVVLTTGGIDDMCL  289 (527)
T ss_pred             Ccc-----cccCCcEEEEe-ccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEeCCCCcHHHH
Confidence            222     34578888776 32     124566666666643  22222344555554443322 245788889999999


Q ss_pred             HHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHH-----------HhcCCChHHHHHHHHH---hhc-CCCC---ceEE
Q psy14945        409 WHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIA-----------VNSGFDAQDTLVKLQE---ACG-EAPG---VAVG  469 (629)
Q Consensus       409 ~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~-----------~NaG~d~~~vl~~L~~---~~~-~~~~---~~~G  469 (629)
                      + ||.+++. .+....+..++++|++....+-.-.           ...|+.......++..   -+. +.++   .++-
T Consensus       290 ~-~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIl  368 (527)
T cd03335         290 K-YFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASII  368 (527)
T ss_pred             H-HHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEE
Confidence            6 8877664 4445578899999998665442110           0122211100000000   000 0011   2344


Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                      +++.|..++++.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.+++++++++         
T Consensus       369 lrG~t~~~l~e~er~i~Dal~~~~~~~~-------~~~vvpGGGa~e-~~ls~~L~~~~~~~~~~~~~~i~---------  431 (527)
T cd03335         369 LRGANDFMLDEMERSLHDALCVVKRTLE-------SNSVVPGGGAVE-TALSIYLENFATTLGSREQLAIA---------  431 (527)
T ss_pred             EeCCcHHHHHHHHHHHHHHHHHHHHHhh-------CCCEeeCCCHHH-HHHHHHHHHHHhccCcHHHHHHH---------
Confidence            6788899999999999999999999997       999999999999 99999999999888999999998         


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCC--------CceeeEecCCCcccccccCCccccHHH
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAP--------GVAVGVDVNSGEVLNPTSAGIYDNLTV  621 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~--------~~~~Gvd~~~g~i~d~~~~gI~dp~~v  621 (629)
                               +|++||++||++||+|||+|+.+++.+|++.|.+ +        +.++|+|+.+|+++||.+.|||||+.|
T Consensus       432 ---------~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~-~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~  501 (527)
T cd03335         432 ---------EFAEALLVIPKTLAVNAAKDATELVAKLRAYHAA-AQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVS  501 (527)
T ss_pred             ---------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCccccccCceEeEECCCCcccchhhccceecHHH
Confidence                     5778888899999999999999999999999976 4        357999999999999999999999999


Q ss_pred             HHHHhhc
Q psy14945        622 KRQIINS  628 (629)
Q Consensus       622 K~~~i~~  628 (629)
                      |.++|++
T Consensus       502 k~~~i~~  508 (527)
T cd03335         502 KIKSLKF  508 (527)
T ss_pred             HHHHHHH
Confidence            9999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=100.00  E-value=3.8e-35  Score=329.37  Aligned_cols=360  Identities=17%  Similarity=0.238  Sum_probs=252.9

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----ccc------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KMH------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~~------  271 (629)
                      ..||+++|+++.++.|++++|||||+|+.++++||++|..|++.+                   .+     ...      
T Consensus        68 ~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~  147 (522)
T TIGR02345        68 IVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQ  147 (522)
T ss_pred             ccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCccccc
Confidence            469999999999999999999999999999999999999999871                   00     001      


Q ss_pred             -cccCccccccccccCCCHHHHHHHHHhCcEEEeccch----hhHHHHHHHhCCccccccc--c--cCcCC-----Cccc
Q psy14945        272 -KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR----RNMERLSLACGGTAMNSVE--G--LEPAH-----LGYA  337 (629)
Q Consensus       272 -~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~----~dl~rIak~tGg~i~~s~~--~--l~~~~-----lG~~  337 (629)
                       +.+..++.+++.+|.+. ...++|++..+.++..+..    .+..++.+..|+++.+|..  .  ++...     ....
T Consensus       148 ~~~l~~va~tsl~sK~~~-~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~  226 (522)
T TIGR02345       148 REVLEKCAATALNSKLIA-HEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQP  226 (522)
T ss_pred             HHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCC
Confidence             01112223455555432 2234455555555554431    2466788889999999853  1  22221     1112


Q ss_pred             ceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        338 GSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                           ..+.+.++++++ ++     .....++++.+.+++  ..+.....+.+.+..+.... -+.++..+|..+.+.+ 
T Consensus       227 -----~~~~n~kIll~~-~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g-~~vv~~~~~i~d~~~~-  298 (522)
T TIGR02345       227 -----KKFANPKILLLN-VELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESG-ANVVLSKLPIGDLATQ-  298 (522)
T ss_pred             -----ceeccceEEEEe-cCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEeCCCccHHHHH-
Confidence                 224577777775 22     123466777666642  11222223333332221111 1346777788888875 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-----------------CC-----c
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-----------------PG-----V  466 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-----------------~~-----~  466 (629)
                      ||.+.+. ......+..+++++++....+           +..+..+...+.| +                 +.     .
T Consensus       299 ~L~~~~I~~~~~v~~~dl~ria~~tga~i-----------i~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~  367 (522)
T TIGR02345       299 YFADHNIFCAGRVSDEDLKRVVKACGGSI-----------QSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTC  367 (522)
T ss_pred             HHHHCCcEEEecCCHHHHHHHHHHhCCeE-----------EcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceE
Confidence            8888875 444456777888888755433           2222222211111 0                 11     2


Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.+++++++++      
T Consensus       368 TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~-------~~~vvpGGG~~e-~~ls~~l~~~~~~~~~~~~~~i~------  433 (522)
T TIGR02345       368 TIILRGGAEQFIEEAERSLHDAIMIVRRALK-------ARKIVAGGGAIE-MELSKILREHSKKIDGKQQLIIE------  433 (522)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEeCCCHHH-HHHHHHHHHHHhhCCCHHHHHHH------
Confidence            3446778899999999999999999999997       899999999999 99999999998888999999998      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++.+|++.|++ ++.++|+|+.+|++.||.+.|||||+.||+++|
T Consensus       434 ------------~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~-~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l  500 (522)
T TIGR02345       434 ------------AFAKALEIIPRSLCENAGFDSIEILNKLRSRHAK-GGKWYGVDINTEDIGDNFENFVWEPLLVKKNAL  500 (522)
T ss_pred             ------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCCccceeCCCCcccchhhcCceEcHHHHHHHH
Confidence                        5777888899999999999999999999999987 566899999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       501 ~~  502 (522)
T TIGR02345       501 KA  502 (522)
T ss_pred             HH
Confidence            74

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=100.00  E-value=2.9e-35  Score=327.17  Aligned_cols=336  Identities=18%  Similarity=0.242  Sum_probs=234.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc-----------------------------cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM-----------------------------HK  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~-----------------------------~~  272 (629)
                      ..||.++|+++.++.|++++|||||+|+.++++||++|..|++++ ..|                             ++
T Consensus        67 ~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~g-i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~  145 (480)
T cd03337          67 VAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERG-IHPTVIIKAYRKALEDALKILEEISIPVDVNDRA  145 (480)
T ss_pred             ccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhccccccCCHH
Confidence            479999999999999999999999999999999999999999871 000                             00


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccc--------hhh---HHHHHHHhCCccccccc--c--cCcCCC--c
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK--------RRN---MERLSLACGGTAMNSVE--G--LEPAHL--G  335 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~--------~~d---l~rIak~tGg~i~~s~~--~--l~~~~l--G  335 (629)
                      .+.-++.+++++|.++. ..+.|++..+.++..+.        ..|   +++|.+..|+++.+|..  .  ++....  +
T Consensus       146 ~l~~i~~t~l~sK~~~~-~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~  224 (480)
T cd03337         146 QMLKIIKSCIGTKFVSR-WSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK  224 (480)
T ss_pred             HHHHHHHHHhccCcchh-HHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC
Confidence            01112224455554432 23333333333333321        112   24567777887777631  1  221111  1


Q ss_pred             ccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        336 YAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       336 ~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      ..     .++.+.++++++ |+-            ++                       .++..+|..+.+++ +|.++
T Consensus       225 m~-----~~~~n~kIlll~-~~L------------e~-----------------------lvi~~k~I~d~al~-~L~~~  262 (480)
T cd03337         225 MR-----RRIENPRIVLLD-CPL------------EY-----------------------LVITEKGVSDLAQH-YLVKA  262 (480)
T ss_pred             CC-----cEecCCCEEEEe-cCc------------ce-----------------------EEEeCCCccHHHHH-HHHHC
Confidence            11     123456666554 221            11                       37788888999986 77766


Q ss_pred             hh-hcCcchHHHHHHHHHHHhhhhHH-----HHHhcCC-ChHHHHHHHHH---hhc-CCC-C--ceEEEEeccCCCCCCC
Q psy14945        416 KN-TVKGKSRLGIQAYAEALLIIPKT-----IAVNSGF-DAQDTLVKLQE---ACG-EAP-G--VAVGVDVNSGEVLNPT  481 (629)
Q Consensus       416 ~~-~i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~-d~~~vl~~L~~---~~~-~~~-~--~~~Gid~~t~~i~d~~  481 (629)
                      +. .+....+..++++|++....+-.     -.+..|+ ...........   ... +.+ .  .++-+++.|...+++.
T Consensus       263 ~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~  342 (480)
T cd03337         263 GITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEV  342 (480)
T ss_pred             CcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHH
Confidence            64 44556788899999886544311     1112333 11100000000   000 001 1  2344678889999999


Q ss_pred             cccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccC
Q psy14945        482 SAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEP  561 (629)
Q Consensus       482 e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a  561 (629)
                      ++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++                  +|+
T Consensus       343 er~l~DAl~v~~~~~~-------~~~~vpGGGa~E-~~ls~~l~~~~~~~~~~~~~~~~------------------~~a  396 (480)
T cd03337         343 ERNLQDAMAVARNIIL-------NPKLVPGGGATE-MAVSHALSEKAKSIEGVEQWPYK------------------AVA  396 (480)
T ss_pred             HHHHHHHHHHHHHHhc-------CCCEEeCCCHHH-HHHHHHHHHHhhcCCCHHHHHHH------------------HHH
Confidence            9999999999999997       999999999999 99999999999888999999998                  577


Q ss_pred             CchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCC-CceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        562 NSVPSLRNSATVNSGFDAQDTLVKLQEACGEAP-GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       562 ~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~-~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +||++||++||+|||+|+.+++++|++.|.+ + +.++|+|+.+|++.||.+.|||||+.+|+++|++
T Consensus       397 ~al~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~  463 (480)
T cd03337         397 SALEVIPRTLAQNCGANVIRTLTELRAKHAQ-GENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKT  463 (480)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-cCCCeECeeccCCCcccchhccCeEcHHHHHHHHHH
Confidence            8888899999999999999999999999987 5 5689999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>KOG0363|consensus

Probab=100.00  E-value=1.2e-35  Score=300.49  Aligned_cols=354  Identities=19%  Similarity=0.277  Sum_probs=239.6

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH------H--------------------hh-----cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE------V--------------------NL-----KM  270 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~------~--------------------~~-----~~  270 (629)
                      ..+|++++++.-++.||+++|||||||..++.|||++|+.|+..      +                    .+     +.
T Consensus        71 vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kf  150 (527)
T KOG0363|consen   71 VDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKF  150 (527)
T ss_pred             CCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH
Confidence            35799999999999999999999999999999999999999975      1                    00     01


Q ss_pred             ccccCccccccccccCCCHHHHHHHHHhCcEEEeccchh---hHHHHHHHhCCcccccccc---cCcCCCc--ccceEEE
Q psy14945        271 HKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR---NMERLSLACGGTAMNSVEG---LEPAHLG--YAGSVFE  342 (629)
Q Consensus       271 ~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~---dl~rIak~tGg~i~~s~~~---l~~~~lG--~~~~v~e  342 (629)
                      +..++..+.+.|++|.. ..-.++|++.++.++.+++.+   +.++|-|+.||++.+|+-+   +-...+|  .+++   
T Consensus       151 r~DLl~iarTTL~SKiL-sq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkr---  226 (527)
T KOG0363|consen  151 REDLLKIARTTLSSKIL-SQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKR---  226 (527)
T ss_pred             HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCCCCccc---
Confidence            22344455567777766 345788999999999988633   6789999999999999732   2222233  3333   


Q ss_pred             EEEcCeeEEEEeecCCC-----ccEEEEecCCCccCHHHHHHHHHhh-HHHHHHHhhCCCcccCCChHHHHHHHHHHhhh
Q psy14945        343 HVLGEEKFTFVEECKNP-----QSVTILLKGPNKHTLAQTKDAVRDG-LRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK  416 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~~~-----~~~TIll~g~~~~~l~e~~r~i~da-l~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~  416 (629)
                        +.+.++.+-...-++     -++.+.+.+-.  .+.|++++=+.. -..+..+.+.+       +.-+-..+.+.+|.
T Consensus       227 --iena~iLIANT~mDtDKvKvfGarvrVds~~--klaelE~AEkeKmK~KV~kI~~hg-------iN~FiNRQLiYnyP  295 (527)
T KOG0363|consen  227 --IENAKILIANTPMDTDKVKVFGARVRVDSTA--KLAELEKAEKEKMKEKVEKILKHG-------INVFINRQLIYNYP  295 (527)
T ss_pred             --ccccceEEecCCCcccceeeecceEeecchh--HHHHHHHHHHHHHHHHHHHHHhcC-------CcEEeehhHhhcCH
Confidence              346665554311111     12233333222  222222221111 11122222222       10001112222222


Q ss_pred             h---------hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHH-----------HHhhcC-----------CC-
Q psy14945        417 N---------TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL-----------QEACGE-----------AP-  464 (629)
Q Consensus       417 ~---------~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L-----------~~~~~~-----------~~-  464 (629)
                      .         .+..-.-.++++++-.           +|.....++...           ...+.+           .| 
T Consensus       296 eqLf~dagi~aIEHADFdGiERLalv-----------tGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~Ge  364 (527)
T KOG0363|consen  296 EQLFADAGIMAIEHADFDGIERLALV-----------TGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGE  364 (527)
T ss_pred             HHHHhhcCcceeecccchhHHHHhhc-----------ccceeeeccCCcchhccccchhhHHHhcCccceeeeccccccc
Confidence            1         1121222345555433           232222222111           111111           01 


Q ss_pred             CceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q psy14945        465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVART  544 (629)
Q Consensus       465 ~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~  544 (629)
                      -+++.+++.|.+++|+.||+++|++||.-+..+       +++++.|||+.| |.++..+.+++.+.+|++..+++    
T Consensus       365 ActIVlrGat~q~LDEaeRslHDALcVLaqtv~-------esrvv~GgG~sE-m~Ma~av~~~A~~~pGkea~Aie----  432 (527)
T KOG0363|consen  365 ACTIVLRGATQQILDEAERSLHDALCVLAQTVK-------ESRVVLGGGCSE-MLMAKAVDKEAQETPGKEALAIE----  432 (527)
T ss_pred             ceEEEEecccHHHHHHHHHHHHHHHHHHHHHhc-------cceeeecCCcHH-HHHHHHHHHHHhhCCchhhHHHH----
Confidence            134567888999999999999999999988876       999999999999 99999999999999999999988    


Q ss_pred             HhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHH
Q psy14945        545 SLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQ  624 (629)
Q Consensus       545 al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~  624 (629)
                                    +|++||..||.+||+|||||+.+++++||+.|+. |+.++|+|+++|++.||.+.||+|+|.||++
T Consensus       433 --------------AfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~-g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~  497 (527)
T KOG0363|consen  433 --------------AFARALRQLPTIIADNAGYDSAELVAQLRAEHYN-GRTTMGLDVRNGEIGDMRELGIVESLKVKQA  497 (527)
T ss_pred             --------------HHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhc-CCcccccccccCchhhHHHhhhHHHHHHHHH
Confidence                          4666777799999999999999999999999988 8899999999999999999999999999999


Q ss_pred             Hhhc
Q psy14945        625 IINS  628 (629)
Q Consensus       625 ~i~~  628 (629)
                      .+.+
T Consensus       498 vv~s  501 (527)
T KOG0363|consen  498 VVSS  501 (527)
T ss_pred             HHhh
Confidence            8754

>cd03343 cpn60 cpn60 chaperonin family

Probab=100.00  E-value=8.5e-35  Score=326.77  Aligned_cols=360  Identities=20%  Similarity=0.281  Sum_probs=256.4

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~----~~~  273 (629)
                      ..||.++|+++.++.|++++|||||+++.+++++|+++..|++.+                   .+     ..    +..
T Consensus        66 ~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~  145 (517)
T cd03343          66 IEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDT  145 (517)
T ss_pred             CcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHH
Confidence            479999999999999999999999999999999999999999761                   00     00    000


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccc-------hh--hHHHHHHHhCCccccccc--c--cCcCC--Ccccc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-------RR--NMERLSLACGGTAMNSVE--G--LEPAH--LGYAG  338 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-------~~--dl~rIak~tGg~i~~s~~--~--l~~~~--lG~~~  338 (629)
                      +.-++.+++++|.+ ....++|++..+.++..+.       ..  +.+++.+..|+++.+|..  .  ++...  -+.. 
T Consensus       146 l~~va~ts~~sk~~-~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~-  223 (517)
T cd03343         146 LRKIAKTSLTGKGA-EAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMP-  223 (517)
T ss_pred             HHHHHHHhhcccch-hhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCc-
Confidence            11122234444433 2223444444444443331       11  346777789999987742  1  32221  1111 


Q ss_pred             eEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                          ..+.+.+++++. ++     .....++.+..+.+.  .++.-++.+...+..+...- -+.|+..+|..+++++ |
T Consensus       224 ----~~~~n~~Illl~-~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g-~~lvi~~~~I~~~al~-~  296 (517)
T cd03343         224 ----KRVENAKIALLD-APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTG-ANVVFCQKGIDDLAQH-Y  296 (517)
T ss_pred             ----cccCCCcEEEEe-ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCccHHHHH-H
Confidence                234577888776 32     124677777776544  33344455555555454332 2567888999999996 7


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------CC---ce
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------PG---VA  467 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~~---~~  467 (629)
                      |.+.+. .+....+..++++|++....+           +..+..+...+.+ +                   ++   .+
T Consensus       297 l~~~gI~~v~~v~~~~l~~Ia~~tGa~i-----------i~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~T  365 (517)
T cd03343         297 LAKAGILAVRRVKKSDMEKLARATGAKI-----------VTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVT  365 (517)
T ss_pred             HhHCCcEEEEeCCHHHHHHHHHHhCCEE-----------ecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEE
Confidence            766653 455567888899888855433           2223333222222 0                   11   13


Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+|+.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++       
T Consensus       366 I~lrG~t~~~l~e~~~~l~Dal~~~~~~~~-------~~~vvpGGG~~e-~~ls~~L~~~~~~~~~~~~~~~~-------  430 (517)
T cd03343         366 ILLRGGTEHVVDELERALEDALRVVADALE-------DGKVVAGGGAVE-IELAKRLREYARSVGGREQLAVE-------  430 (517)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHHHHHHHh-------CCCeeeCCCHHH-HHHHHHHHHHHhcCCCHHHHHHH-------
Confidence            445677889999999999999999999997       999999999999 99999999998888999999998       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                 +|++|||.||++||+|||+|+.+++.+|++.|.+ ++.++|+|+.+|.+.||.+.|||||+.||+|+|+
T Consensus       431 -----------~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~  498 (517)
T cd03343         431 -----------AFADALEEIPRTLAENAGLDPIDTLVELRAAHEK-GNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIK  498 (517)
T ss_pred             -----------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-cCCceeeecCCCCccchhhcCceecHHHHHHHHH
Confidence                       5777888899999999999999999999999976 5678999999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       499 ~  499 (517)
T cd03343         499 S  499 (517)
T ss_pred             H
Confidence            4

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=100.00  E-value=7.2e-35  Score=327.33  Aligned_cols=370  Identities=18%  Similarity=0.238  Sum_probs=257.5

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc-----c--c----
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK-----M--H----  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~-----~--~----  271 (629)
                      ..||+++|+++.++.|++++|||||+|+.++++||++|+.|++.+                   .++     +  +    
T Consensus        69 ~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~  148 (531)
T TIGR02346        69 VQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNK  148 (531)
T ss_pred             ccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCH
Confidence            469999999999999999999999999999999999999999871                   000     0  0    


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccch-------hhHHHHHHHhCCccccccc----ccCcCCCcccceE
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------RNMERLSLACGGTAMNSVE----GLEPAHLGYAGSV  340 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~dl~rIak~tGg~i~~s~~----~l~~~~lG~~~~v  340 (629)
                      ..+..++.+++++|.++.  .++|++..+.++..+..       .+.+++.++.|+++.++..    .++....+..+  
T Consensus       149 ~~l~~i~~tsl~sK~~~~--~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k--  224 (531)
T TIGR02346       149 KELIKALKASISSKQYGN--EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVK--  224 (531)
T ss_pred             HHHHHHHHHHhccccCch--HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCce--
Confidence            001111113455555543  55566666666554421       2456777889998887742    13333223332  


Q ss_pred             EEEEEcCeeEEEEeecC----CCc-cEEEEecCCCccC--HHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH
Q psy14945        341 FEHVLGEEKFTFVEECK----NPQ-SVTILLKGPNKHT--LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ  413 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~----~~~-~~TIll~g~~~~~--l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~  413 (629)
                         .+.+.++.++. ++    .+. ..++.+..+.++.  .+.-...+...+..+.... -+.|+...|..+.+++ +|.
T Consensus       225 ---~i~n~kI~l~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g-~~lvi~~~~I~d~~~~-~l~  298 (531)
T TIGR02346       225 ---RVKNAKVAVFS-CPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSG-VNVIVTGGSVGDMALH-YCE  298 (531)
T ss_pred             ---eccCCCEEEEe-cCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEECCCcCHHHHH-HHH
Confidence               35578888886 33    223 6788888877652  1111344555555443332 2457888888888885 777


Q ss_pred             hhhh-hcCcchHHHHHHHHHHHhhhhHHHH-----HhcCCChHHHHHHHHH---hhc-CCC--C--ceEEEEeccCCCCC
Q psy14945        414 NYKN-TVKGKSRLGIQAYAEALLIIPKTIA-----VNSGFDAQDTLVKLQE---ACG-EAP--G--VAVGVDVNSGEVLN  479 (629)
Q Consensus       414 ~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~-----~NaG~d~~~vl~~L~~---~~~-~~~--~--~~~Gid~~t~~i~d  479 (629)
                      +.+. .+.......++.+|.+....+-.-.     +..|.-......++-.   ... +..  .  .++-+++.|..+++
T Consensus       299 ~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~  378 (531)
T TIGR02346       299 KYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLD  378 (531)
T ss_pred             HCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHH
Confidence            6653 4455566788888887654432111     1122110000000000   000 000  1  23446777889999


Q ss_pred             CCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhc
Q psy14945        480 PTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLA  559 (629)
Q Consensus       480 ~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~  559 (629)
                      +.++.+.|++++.+++++       ++++|||||++| ++++..|++++....++++++++                  +
T Consensus       379 E~er~i~DAl~~~k~ai~-------~~~vVpGGG~~e-~~ls~~L~~~~~~~~~~~~~~~~------------------~  432 (531)
T TIGR02346       379 DIERAIDDGVNVIKALVK-------DNRFLPGAGATE-IELALRLKKYANKLPGLDQYAIK------------------K  432 (531)
T ss_pred             HHHHHHHHHHHHHHHHhc-------CCCEEECcCHHH-HHHHHHHHHHhccCCCHHHHHHH------------------H
Confidence            999999999999999997       999999999999 99999999998888899999988                  5


Q ss_pred             cCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCc--ccccccCCccccHHHHHHHhhc
Q psy14945        560 EPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGE--VLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       560 ~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~--i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      |++||+.||++||+|||+|+.+++.+|+..|++ ++.++|+|+.+|.  +.||.+.|||||+.||+++|++
T Consensus       433 ~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~  502 (531)
T TIGR02346       433 FAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKK-GNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKL  502 (531)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCccceeeeCCCccccChhhcCceEcHHHHHHHHHH
Confidence            777888899999999999999999999999976 5668999999999  6999999999999999999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=100.00  E-value=4.7e-35  Score=325.58  Aligned_cols=335  Identities=26%  Similarity=0.308  Sum_probs=240.1

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----ccc-----c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KMH-----K  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~~-----~  272 (629)
                      ..||+++|+++.++.|++++|||||+++.++++||++|..|++.+                   .+     ..+     +
T Consensus        63 ~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~  142 (484)
T cd03342          63 IQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRE  142 (484)
T ss_pred             CcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence            479999999999999999999999999999999999999999761                   00     000     0


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccc----h--hhHHHHHHHhCCccccccc--c--cCcCCCcccceEEE
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK----R--RNMERLSLACGGTAMNSVE--G--LEPAHLGYAGSVFE  342 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~----~--~dl~rIak~tGg~i~~s~~--~--l~~~~lG~~~~v~e  342 (629)
                      .+.-++.+++.+|.++ ...++|++..+.++..+.    .  .+++++.+..|+++.++..  .  ++...   ...-..
T Consensus       143 ~l~~va~ts~~sk~~~-~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~---~~~~m~  218 (484)
T cd03342         143 LLLSVARTSLRTKLHA-DLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGA---RHPDMP  218 (484)
T ss_pred             HHHHHHHHHhCcccch-hHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCC---CCCCCC
Confidence            0111222344454332 233445555555554442    1  1456788888998877741  1  22111   000001


Q ss_pred             EEEcCeeEEEEeecCC----C-ccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        343 HVLGEEKFTFVEECKN----P-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~~----~-~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      ..+.+.++.+++ |+-    + ...++.+.                            .|+..+|..+.+++ +|.+.+.
T Consensus       219 ~~~~n~~Ill~~-~~le~~~~~~~~~~~~~----------------------------lvi~~~~I~~~al~-~l~~~~I  268 (484)
T cd03342         219 KRVENAYILTCN-VSLEYEKTEVNSGFFYS----------------------------VVINQKGIDPPSLD-MLAKEGI  268 (484)
T ss_pred             ccccCceEEEEe-CCCCCCccccCcEEEEE----------------------------EEEeCCCccHHHHH-HHHHCCC
Confidence            234577777775 331    1 12222221                            37788899999996 7766653


Q ss_pred             -hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC--------------------CCC---ceEEEEec
Q psy14945        418 -TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE--------------------APG---VAVGVDVN  473 (629)
Q Consensus       418 -~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~--------------------~~~---~~~Gid~~  473 (629)
                       .+....+..++++|++....+           +..+..+...+.|                    .+.   .++-+++.
T Consensus       269 ~av~~~~~~~l~~ia~~tGa~i-----------i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~  337 (484)
T cd03342         269 LALRRAKRRNMERLTLACGGVA-----------MNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGP  337 (484)
T ss_pred             eEEEeCCHHHHHHHHHHhCCEE-----------ecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCC
Confidence             445567888999998865443           2222222211111                    011   13345777


Q ss_pred             cCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHH
Q psy14945        474 SGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERE  553 (629)
Q Consensus       474 t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~  553 (629)
                      |..++|+.+|.+.|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++             
T Consensus       338 t~~~l~E~er~l~DAl~~vk~~~~-------~~~~vpGGGa~e-~~ls~~L~~~~~~~~~~~~~~i~-------------  396 (484)
T cd03342         338 NDHTITQIKDAIRDGLRAVKNAIE-------DKCVVPGAGAFE-VALYAHLKEFKKSVKGKAKLGVQ-------------  396 (484)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhc-------CCcEEeCCCHHH-HHHHHHHHHHhhcCCCHHHHHHH-------------
Confidence            899999999999999999999997       999999999999 99999999999888999999998             


Q ss_pred             HHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        554 LADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       554 ~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                           +|++||++||++||+|||+|+.+++++|++.|++ ++.++|+|+.+|++.||.+.|||||+.||+++|++
T Consensus       397 -----~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~  465 (484)
T cd03342         397 -----AFADALLVIPKTLAENSGLDVQETLVKLQDEYAE-GGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHS  465 (484)
T ss_pred             -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-cCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHH
Confidence                 5777888899999999999999999999999977 56789999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=100.00  E-value=5.6e-34  Score=320.86  Aligned_cols=371  Identities=18%  Similarity=0.221  Sum_probs=253.9

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh----c-c-c----c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL----K-M-H----K  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~----~-~-~----~  272 (629)
                      ..||+++|+.+.++.|++++|||||+|+.++++||++|..|++.+                   .+    . + +    .
T Consensus        63 ~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~  142 (536)
T TIGR02340        63 VEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGRE  142 (536)
T ss_pred             ccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHH
Confidence            469999999999999999999999999999999999999999871                   00    0 0 0    0


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccc----------hhhHHHHHHHhCCcccccc--cc--cCcCC--Ccc
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK----------RRNMERLSLACGGTAMNSV--EG--LEPAH--LGY  336 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~----------~~dl~rIak~tGg~i~~s~--~~--l~~~~--lG~  336 (629)
                      .+..++.+++++|.++. ..++|++..+.++..+.          ..+++++.+..|+++.++.  +.  ++...  .+.
T Consensus       143 ~l~~va~tsl~sK~~~~-~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m  221 (536)
T TIGR02340       143 ALINVAKTSMSSKIIGL-DSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQM  221 (536)
T ss_pred             HHHHHHHHHhccccchh-hHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCC
Confidence            01112224555554432 23455555555444431          1246677778999986663  21  22211  122


Q ss_pred             cceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHH
Q psy14945        337 AGSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAW  409 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~  409 (629)
                      ..     .+.+.+++++. |+     .....++.+.++.++  ..+.-...+.+.+..+..... +.|+...|..+++++
T Consensus       222 ~~-----~~~n~kIli~~-~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~-~lvi~~k~I~~~a~~  294 (536)
T TIGR02340       222 PK-----RIKKAKIACLD-FNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA-NVVLTTGGIDDMCLK  294 (536)
T ss_pred             cc-----eecCCcEEEEe-cCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEeCCCCcHHHHH
Confidence            22     34578887775 33     124577777766643  222222444444444433322 457788888888886


Q ss_pred             HHHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-HH----------HhcCCChHHHHHHHHH---hhc-CCCC---ceEEE
Q psy14945        410 HALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-IA----------VNSGFDAQDTLVKLQE---ACG-EAPG---VAVGV  470 (629)
Q Consensus       410 ~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-L~----------~NaG~d~~~vl~~L~~---~~~-~~~~---~~~Gi  470 (629)
                       ||.+++. .+....+..++++|++....+-. +.          ...|+........+..   -+. +.+.   .++-+
T Consensus       295 -~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIli  373 (536)
T TIGR02340       295 -YFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIIL  373 (536)
T ss_pred             -HHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence             8877664 44555688999999886654311 10          0022211100000000   000 0011   13446


Q ss_pred             EeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhh
Q psy14945        471 DVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKV  550 (629)
Q Consensus       471 d~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~  550 (629)
                      ++.|...+|+.++.+.|++++.+++++       ++++|||||++| ++++..|++++.+.+++++++++          
T Consensus       374 rG~t~~~l~E~~r~i~DAl~~~~~~~~-------~~~vVpGGGa~e-~~ls~~l~~~~~~~~~~~~~~~~----------  435 (536)
T TIGR02340       374 RGANDFMLDEMERSLHDALCVVKRTLE-------SNSVVPGGGAVE-TALSIYLENFATTLGSREQLAIA----------  435 (536)
T ss_pred             eCCcHHHHHHHHHHHHHHHHHHHHHhc-------CCCEEECCCHHH-HHHHHHHHHHhhhCCChhHHHHH----------
Confidence            778899999999999999999999997       999999999999 99999999998888899999998          


Q ss_pred             HHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCC--------CceeeEecCCCcccccccCCccccHHHH
Q psy14945        551 ERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAP--------GVAVGVDVNSGEVLNPTSAGIYDNLTVK  622 (629)
Q Consensus       551 ~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~--------~~~~Gvd~~~g~i~d~~~~gI~dp~~vK  622 (629)
                              +|++||+.||++||+|||+|+.+++.+|++.|.. +        ..++|+|+.+|++.||.+.|||||+.||
T Consensus       436 --------~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~-~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k  506 (536)
T TIGR02340       436 --------EFAEALLIIPKVLAVNAALDSTELVAKLRAYHAA-AQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSK  506 (536)
T ss_pred             --------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCcccccccCceEeEEccCCccccchhccceecHHHH
Confidence                    4777788899999999999999999999999976 3        3479999999999999999999999999


Q ss_pred             HHHhhc
Q psy14945        623 RQIINS  628 (629)
Q Consensus       623 ~~~i~~  628 (629)
                      .|+|++
T Consensus       507 ~~~l~~  512 (536)
T TIGR02340       507 VKSLKF  512 (536)
T ss_pred             HHHHHH
Confidence            999974

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=100.00  E-value=4.3e-34  Score=320.84  Aligned_cols=375  Identities=17%  Similarity=0.174  Sum_probs=248.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~----~~~  273 (629)
                      ..||+++|+++.++.|++++|||||+++.++++||++|..|++.+                   .+     ..    ++.
T Consensus        59 ~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~  138 (515)
T cd03338          59 VLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRES  138 (515)
T ss_pred             CcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence            469999999999999999999999999999999999999999761                   00     00    001


Q ss_pred             cCccccccccccCCC---HHHHHHHHHhCcEEEecc--c--hhhHHHHHHHhCCccccccc----ccCcCCCcccceEEE
Q psy14945        274 APDCSTSDRYRTGID---PQSLDLFAREGIIALRRA--K--RRNMERLSLACGGTAMNSVE----GLEPAHLGYAGSVFE  342 (629)
Q Consensus       274 l~v~~~~~l~~k~i~---~~~~~~la~~~I~vv~~v--~--~~dl~rIak~tGg~i~~s~~----~l~~~~lG~~~~v~e  342 (629)
                      +..++.+++++|.++   +...++++++...+-+.-  .  ..+..++.+..|+++.+|..    .++......-..  .
T Consensus       139 l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~--p  216 (515)
T cd03338         139 LIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGG--P  216 (515)
T ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCC--C
Confidence            111223455555442   223344443333332211  0  12455677888999888831    123222111000  1


Q ss_pred             EEEcCeeEEEEeecC----C-CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCCh-----HHHHHHH
Q psy14945        343 HVLGEEKFTFVEECK----N-PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA-----FEVAAWH  410 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~----~-~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~-----~El~l~~  410 (629)
                      ..+.+.++.++. |+    . ....++++..+.+.  .++..++.+...+..+.... -+.|+...+.     .+++++ 
T Consensus       217 ~~i~n~ki~ll~-~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g-~~lvi~~~~i~~~~v~~l~~~-  293 (515)
T cd03338         217 TRIEKAKIGLIQ-FCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSG-CNVLLIQKSILRDAVSDLALH-  293 (515)
T ss_pred             ccccCCcEEEEe-ccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEECCCcccccccHHHHH-
Confidence            123466777664 22    1 13456677555422  22222345555444443322 2445665554     567664 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-----HHHhcCCChHHHHHHHHHh---hc-CC-C---CceEEEEeccCC
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-----IAVNSGFDAQDTLVKLQEA---CG-EA-P---GVAVGVDVNSGE  476 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~d~~~vl~~L~~~---~~-~~-~---~~~~Gid~~t~~  476 (629)
                      ||.+++. .+....+..++++|++....+-.     -....|......+.+.-..   +. +. .   ..++-+++.|..
T Consensus       294 ~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~  373 (515)
T cd03338         294 FLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKL  373 (515)
T ss_pred             HHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHH
Confidence            7877654 45556788899999886553311     0111222100000000000   00 00 1   123445777889


Q ss_pred             CCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHh
Q psy14945        477 VLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELAD  556 (629)
Q Consensus       477 i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  556 (629)
                      .+++.++.+.|++++.+++++       ++++|||||++| ++++..|++++...++++|++++                
T Consensus       374 ~l~e~~r~i~Dal~~~~~~~~-------~~~vvpGGG~~e-~~ls~~l~~~~~~~~~~~~~~~~----------------  429 (515)
T cd03338         374 VLDEAERSLHDALCVIRCLVK-------KRALIPGGGAPE-IEIALQLSEWARTLTGVEQYCVR----------------  429 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-------CCCEEECCCHHH-HHHHHHHHHHhccCCcHHHHHHH----------------
Confidence            999999999999999999997       999999999999 99999999998888899999998                


Q ss_pred             hhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        557 LLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       557 ~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                        +|++||+.||++||+|||+|+.+++++|++.|++ ++.++|+|+.+|.+.||.+.|||||+.||+++|++
T Consensus       430 --~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~  498 (515)
T cd03338         430 --AFADALEVIPYTLAENAGLNPISIVTELRNRHAQ-GEKNAGINVRKGAITNILEENVVQPLLVSTSAITL  498 (515)
T ss_pred             --HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCCccceeccCCCccchhhcCceecHHHHHHHHHH
Confidence              5777888899999999999999999999999976 56789999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=100.00  E-value=2e-33  Score=311.74  Aligned_cols=338  Identities=18%  Similarity=0.236  Sum_probs=231.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc-----------------------c---c--c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM-----------------------H---K--F  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~-----------------------~---~--~  273 (629)
                      ..||+++|+++..+.|++++|||||+++.++++||++|..|++.+ ..|                       .   .  .
T Consensus        59 ~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~g-i~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~  137 (472)
T cd03341          59 VQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMG-LHPSEIIEGYEKALKKALEILEELVVYKIEDLRN  137 (472)
T ss_pred             ccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhccccCCccC
Confidence            469999999999999999999999999999999999999999871 100                       0   0  0


Q ss_pred             ---cCccccccccccCCCHHHHHHHHHhCcEEEeccc-----hh--hHHHHHHHhCCccccccc----ccCcCCCcccce
Q psy14945        274 ---APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-----RR--NMERLSLACGGTAMNSVE----GLEPAHLGYAGS  339 (629)
Q Consensus       274 ---l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-----~~--dl~rIak~tGg~i~~s~~----~l~~~~lG~~~~  339 (629)
                         +..++.+++++|..+  ..++|++..+.++..+.     ..  +..+|.+..|+++.+|..    .++....+..  
T Consensus       138 ~~~l~~i~~t~l~sk~~~--~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~--  213 (472)
T cd03341         138 KEEVSKALKTAIASKQYG--NEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSV--  213 (472)
T ss_pred             HHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCc--
Confidence               000111233444332  13344444444443332     11  345666777887777731    1222111111  


Q ss_pred             EEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh-h
Q psy14945        340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN-T  418 (629)
Q Consensus       340 v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~-~  418 (629)
                         ..+.+.++.++. ++-..                                .-+.++..++..+.+++ +|.+.+. .
T Consensus       214 ---~~~~n~~Ili~~-~~Le~--------------------------------g~~lvi~~~~I~d~al~-~l~~~~I~a  256 (472)
T cd03341         214 ---KRVKKAKVAVFS-CPFDI--------------------------------GVNVIVAGGSVGDLALH-YCNKYGIMV  256 (472)
T ss_pred             ---eeccCCcEEEEe-ccccC--------------------------------CCeEEEECCCCCHHHHH-HHHHCCeEE
Confidence               224456665554 22111                                11446777788888885 7877653 3


Q ss_pred             cCcchHHHHHHHHHHHhhhhHH-----HHHhcCCChHHHHHHHHH---hhc-CCC--C--ceEEEEeccCCCCCCCcccc
Q psy14945        419 VKGKSRLGIQAYAEALLIIPKT-----IAVNSGFDAQDTLVKLQE---ACG-EAP--G--VAVGVDVNSGEVLNPTSAGI  485 (629)
Q Consensus       419 i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~d~~~vl~~L~~---~~~-~~~--~--~~~Gid~~t~~i~d~~e~~I  485 (629)
                      +....+..++++|++....+-.     -.+..|........++-.   -+. +.+  .  .++-+++.|...+++.++.+
T Consensus       257 v~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i  336 (472)
T cd03341         257 IKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAI  336 (472)
T ss_pred             EEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHH
Confidence            4445677888888875543311     011223211000000000   000 001  1  23445777889999999999


Q ss_pred             cchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchh
Q psy14945        486 YDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVP  565 (629)
Q Consensus       486 ~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~  565 (629)
                      .|++++.+++++       ++++|||||++| ++++..|++++....++++++++                  +|++||+
T Consensus       337 ~DAl~~~~~ai~-------~~~vVpGGG~~e-~~ls~~l~~~~~~~~~~~~~~~~------------------~~a~al~  390 (472)
T cd03341         337 DDGVNVFKSLTK-------DGRFVPGAGATE-IELAKKLKEYGEKTPGLEQYAIK------------------KFAEAFE  390 (472)
T ss_pred             HHHHHHHHHHhc-------CCCEEeCcCHHH-HHHHHHHHHHhhccCCHHHHHHH------------------HHHHHHH
Confidence            999999999997       999999999999 99999999998888889999988                  4777788


Q ss_pred             HHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCC--cccccccCCccccHHHHHHHhhc
Q psy14945        566 SLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       566 ~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g--~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +||++||+|||+|+.+++.+|+..|.+ ++.++|+|+.+|  ++.||.+.|||||+.||+++|++
T Consensus       391 ~ip~~L~~NaG~d~~~~~~~l~~~h~~-~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~  454 (472)
T cd03341         391 VVPRTLAENAGLDATEVLSELYAAHQK-GNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKL  454 (472)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHc-cCCeeeeeccCCCCCccChhhccceecHHHHHHHHHH
Confidence            899999999999999999999999976 567899999999  99999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

Probab=99.98  E-value=1.7e-31  Score=273.92  Aligned_cols=230  Identities=21%  Similarity=0.216  Sum_probs=198.0

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCcccccccc-ceeEEEecCCCccceEEEEeEEEeccCCCCCCcccccCeeEEEeec
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHIL-TCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNI  196 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~-~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~  196 (629)
                      .+.|+.++|+|+..-.-..    . .....++. +++|++++||++.||++++|++|+++..++.||++++||||++++|
T Consensus        20 ~~~ls~l~v~Av~~v~~~~----~-~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~   94 (261)
T cd03334          20 LDILLPLVWKAASNVKPDV----R-AGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG   94 (261)
T ss_pred             HHHHHHHHHHHHHHhhccc----c-cCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee
Confidence            5778888888887521000    0 00123444 4999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCc
Q psy14945        197 SMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD  276 (629)
Q Consensus       197 ~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v  276 (629)
                      +|++++++.+                ...+..++.+|.+++.+.        +..|.             ..++    .+
T Consensus        95 ~Le~~~~~~~----------------~~~~~~~~~~E~~~l~~~--------v~kI~-------------~~g~----nv  133 (261)
T cd03334          95 PLEYQRVENK----------------LLSLDPVILQEKEYLKNL--------VSRIV-------------ALRP----DV  133 (261)
T ss_pred             eeccccccCC----------------HHHHHHHHHHHHHHHHHH--------HHHHH-------------hcCC----CE
Confidence            9999887633                246788999999999999        88887             4454    22


Q ss_pred             cccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccc-cccCcCCCcccceEEEEEEcC-----eeE
Q psy14945        277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV-EGLEPAHLGYAGSVFEHVLGE-----EKF  350 (629)
Q Consensus       277 ~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~-~~l~~~~lG~~~~v~e~~i~~-----~~~  350 (629)
                          ++++++|++.+++||.+++|++++++++++++|||++|||++++++ ..++++.+|+|+.+++.++++     .++
T Consensus       134 ----Il~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~  209 (261)
T cd03334         134 ----ILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTL  209 (261)
T ss_pred             ----EEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeE
Confidence                5689999999999999999999999999999999999999999995 478889999999999999986     699


Q ss_pred             EEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCc
Q psy14945        351 TFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAV  397 (629)
Q Consensus       351 ~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~V  397 (629)
                      ++|++|+.+..+||+|||+++..++|++|+++||+++++++..+..+
T Consensus       210 ~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~~~  256 (261)
T cd03334         210 MFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLETSF  256 (261)
T ss_pred             EEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999998899999999999999999999999999999998877643

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.5e-32  Score=303.02  Aligned_cols=369  Identities=20%  Similarity=0.222  Sum_probs=256.3

Q ss_pred             cccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----cccccC---c
Q psy14945        223 QHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----MHKFAP---D  276 (629)
Q Consensus       223 ~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~~~~l~---v  276 (629)
                      +||.++|+++-++.|++++||||||++.++++||++|+.+|+.+                   .++    +-....   .
T Consensus        63 ehp~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~  142 (524)
T COG0459          63 EHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELK  142 (524)
T ss_pred             cCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhh
Confidence            79999999999999999999999999999999999999999771                   000    000000   1


Q ss_pred             cccccccccCCCHHHHHHHHHhCcEEEeccchh----hHHHHHHHhCCccccccc----ccCc---CCCcccceEEEEEE
Q psy14945        277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR----NMERLSLACGGTAMNSVE----GLEP---AHLGYAGSVFEHVL  345 (629)
Q Consensus       277 ~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~----dl~rIak~tGg~i~~s~~----~l~~---~~lG~~~~v~e~~i  345 (629)
                      ++.+.++++..+..  +++.+..+.++..+...    +.+++.+..|+...++..    .++.   .++....    ..+
T Consensus       143 ~~~t~v~sk~~~~~--~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~----~~~  216 (524)
T COG0459         143 IAITSVASKSANSD--EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD----KRL  216 (524)
T ss_pred             hhhheeeeeeccCh--HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCc----ccc
Confidence            12345566666433  77777777888777653    788888899998887742    1333   2223331    234


Q ss_pred             cCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHH-HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        346 GEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTK-DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       346 ~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~-r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      .+.++.+++ |+     ......+.+..+++.  +.++.+ ..+...........-+-.+|...|..+++.+ ||.+.+.
T Consensus       217 e~~~Ili~d-~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~-~L~d~~I  294 (524)
T COG0459         217 ENPKILLLD-KKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKA-YLEDIAI  294 (524)
T ss_pred             ccceEEEEc-cccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHH-HHHhhcc
Confidence            578888876 33     113378888888855  455555 5555554333333333357888899999996 8888764


Q ss_pred             -hcCcchHHHH-HHHHHHHhhhhHH-HH----HhcCC----------ChHHHHHHHHHhhc-CCCCceEEEEeccCCCCC
Q psy14945        418 -TVKGKSRLGI-QAYAEALLIIPKT-IA----VNSGF----------DAQDTLVKLQEACG-EAPGVAVGVDVNSGEVLN  479 (629)
Q Consensus       418 -~i~~~~k~~i-~~fa~ALe~ip~~-L~----~NaG~----------d~~~vl~~L~~~~~-~~~~~~~Gid~~t~~i~d  479 (629)
                       ......+.++ ..++++...-+-. +-    .-.|.          .+-+-.+.+..... ..+..++-+++.|...+|
T Consensus       295 lt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ld  374 (524)
T COG0459         295 LTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELD  374 (524)
T ss_pred             eecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHH
Confidence             2222233344 4555443322100 00    11121          01111122221111 001234456778999999


Q ss_pred             CCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHhhhhhHHHHHhhh
Q psy14945        480 PTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPP-SREILLDVARTSLRTKVERELADLL  558 (629)
Q Consensus       480 ~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~l  558 (629)
                      +.++.|.|++++.++++.       ++++|||||+.| ++++..|++++.+.++ ++|++++                  
T Consensus       375 E~er~i~DAL~~~~~ave-------~g~iV~GGGa~e-~~~a~~L~~~~~~~~g~~e~~~i~------------------  428 (524)
T COG0459         375 EKERRIEDALNVVRAAVE-------EGKIVPGGGAAE-IEAALRLREYAMTVEGGDEQLGIE------------------  428 (524)
T ss_pred             HHHHHHHHHHHHHHHHHh-------cCCeEeCCCHHH-HHHHHHHHhhhccCCchHHHHHHH------------------
Confidence            999999999999999997       889999999999 9999999998555555 8999999                  


Q ss_pred             ccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcc-cccccCCccccHHHHHHHhhc
Q psy14945        559 AEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEV-LNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       559 ~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i-~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +|++|||.||++||+|||+|+.+++++||+.|.   ..++|+|+.+|++ .||.+.|||||+.||+++|+.
T Consensus       429 ~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~  496 (524)
T COG0459         429 AFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN  496 (524)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceeccCCccccchHhccCcChHHHHHHHHHH
Confidence            466777889999999999999999999999884   3469999999999 779999999999999999974

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=99.98  E-value=1e-32  Score=306.23  Aligned_cols=339  Identities=22%  Similarity=0.282  Sum_probs=227.8

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc-----------------------------cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM-----------------------------HK  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~-----------------------------~~  272 (629)
                      ..||.++++.+..+.|++++|||||+++.++++||+++..|++.+ ..|                             ++
T Consensus        59 ~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~g-i~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~  137 (464)
T cd00309          59 VEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAG-IHPTEIIRGYEKAVEKALEILKEIAVPIDVEDRE  137 (464)
T ss_pred             CcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHH
Confidence            369999999999999999999999999999999999999999761 111                             00


Q ss_pred             ccCccccccccccCC---CHHHHHHHHHhCcEEEeccc--hhhHHHHHHHhCCccccccc----ccCcCCCcccceEEEE
Q psy14945        273 FAPDCSTSDRYRTGI---DPQSLDLFAREGIIALRRAK--RRNMERLSLACGGTAMNSVE----GLEPAHLGYAGSVFEH  343 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i---~~~~~~~la~~~I~vv~~v~--~~dl~rIak~tGg~i~~s~~----~l~~~~lG~~~~v~e~  343 (629)
                      .+..++.+++.+|-.   ++...+++.++.-.+-+...  .....++.+..|+++.+|.-    .++.....   .....
T Consensus       138 ~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~---~~m~~  214 (464)
T cd00309         138 ELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLS---PYMPK  214 (464)
T ss_pred             HHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCC---CCCce
Confidence            011111233333332   22233333333322211110  02345566666666666531    11111110   00012


Q ss_pred             EEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh-hcCcc
Q psy14945        344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN-TVKGK  422 (629)
Q Consensus       344 ~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~-~i~~~  422 (629)
                      .+.+.++.++. |+-            ++                       .|+..+|..+.+++ +|.+++. .+...
T Consensus       215 ~~~n~~Ili~~-~~L------------e~-----------------------lIi~~~~I~~~al~-~L~~~~I~~v~~~  257 (464)
T cd00309         215 RLENAKILLLD-CKL------------EY-----------------------VVIAEKGIDDEALH-YLAKLGIMAVRRV  257 (464)
T ss_pred             eecCceEEEEe-cCc------------ce-----------------------EEecCCCcCHHHHH-HHHHCCeEEEEeC
Confidence            23345554443 221            11                       37788889999996 7776653 34445


Q ss_pred             hHHHHHHHHHHHhhhhHHH-----HHhcCCChHHHHHHHHH---hhc-C-CCC--ceEEEEeccCCCCCCCcccccchhh
Q psy14945        423 SRLGIQAYAEALLIIPKTI-----AVNSGFDAQDTLVKLQE---ACG-E-APG--VAVGVDVNSGEVLNPTSAGIYDNLT  490 (629)
Q Consensus       423 ~k~~i~~fa~ALe~ip~~L-----~~NaG~d~~~vl~~L~~---~~~-~-~~~--~~~Gid~~t~~i~d~~e~~I~D~~~  490 (629)
                      .+..++++|++....+-.-     ..+.|........++..   -+. + .+.  .++-+++.|...+++.++.++|+++
T Consensus       258 ~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~  337 (464)
T cd00309         258 RKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALC  337 (464)
T ss_pred             CHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence            7888999988865543110     11122211000000000   000 0 011  2344577788999999999999999


Q ss_pred             HHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHH
Q psy14945        491 VKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNS  570 (629)
Q Consensus       491 Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~  570 (629)
                      +.+++++       +|++|||||++| ++++..|++++...+++++++++                  +|++||++||++
T Consensus       338 ~~~~~~~-------~~~~vpGGGa~E-~~ls~~L~~~~~~~~~~~~~~~~------------------~~a~aL~~ip~~  391 (464)
T cd00309         338 AVRAAVE-------DGGIVPGGGAAE-IELSKALEELAKTLPGKEQLGIE------------------AFADALEVIPRT  391 (464)
T ss_pred             HHHHHHH-------cCCcccCCcHHH-HHHHHHHHHHhcccchHHHHHHH------------------HHHHHHHHHHHH
Confidence            9999997       899999999999 99999999999888899999998                  477778889999


Q ss_pred             hHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        571 ATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       571 La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      ||+|||+|+.+++.+|++.|.+ ++.++|+|+.+|++.||.+.|||||+.||+++|+.
T Consensus       392 L~~NaG~d~~~~~~~l~~~~~~-~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~  448 (464)
T cd00309         392 LAENAGLDPIEVVTKLRAKHAE-GGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKS  448 (464)
T ss_pred             HHHHcCCCHHHHHHHHHHHhhc-cCCCeeEECCCCcEeehhhccCeecHHHHHHHHHH
Confidence            9999999999999999999976 56789999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>cd03344 GroEL GroEL_like type I chaperonin

Probab=99.97  E-value=7.3e-31  Score=293.64  Aligned_cols=129  Identities=20%  Similarity=0.276  Sum_probs=119.2

Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+|+.++.+.|++++.+++++       ++ +|||||++| ++++..|++++. .++++|++++      
T Consensus       375 TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~-------~g-~VpGGGa~e-~~~s~~L~~~~~-~~~~~~~~~~------  438 (520)
T cd03344         375 VIKVGGATEVELKEKKDRVEDALNATRAAVE-------EG-IVPGGGVAL-LRASPALDKLKA-LNGDEKLGIE------  438 (520)
T ss_pred             EEEEecCcHHHHHHHHHHHHHHHHHHHHHHh-------cC-CCcCCcHHH-HHHHHHHHHhcc-CChHHHHHHH------
Confidence            4456788999999999999999999999997       75 999999999 999999999987 8899999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++|++.|.     ++|+|+.+|+++||.+.|||||+.||.|+|
T Consensus       439 ------------~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l  501 (520)
T cd03344         439 ------------IVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-----GFGYDAATGEYVDMIEAGIIDPTKVVRSAL  501 (520)
T ss_pred             ------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-----CEeEECCCCcccchHhccCeecHHHHHHHH
Confidence                        577788889999999999999999999999872     799999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       502 ~~  503 (520)
T cd03344         502 QN  503 (520)
T ss_pred             HH
Confidence            74

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=8.9e-30  Score=285.75  Aligned_cols=129  Identities=19%  Similarity=0.262  Sum_probs=118.9

Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|..++|+.++.+.|++++.+++++       ++ +|||||++| ++++..|++++ +.++++|++++      
T Consensus       377 TI~irG~t~~~l~E~er~i~DAl~~~~~a~~-------~g-~VpGGGa~e-~~ls~~L~~~~-~~~g~~~~~i~------  440 (542)
T PRK12849        377 VIKVGAATEVELKERKDRVEDALNATRAAVE-------EG-IVPGGGVAL-LRAAKALDELA-GLNGDQAAGVE------  440 (542)
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHH-------cC-eecCCCHHH-HHHHHHHHHhh-CCChHHHHHHH------
Confidence            4556788999999999999999999999997       74 999999999 99999999998 88999999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++|++.|     .++|+|+.+|++.||.+.|||||+.||.|+|
T Consensus       441 ------------~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al  503 (542)
T PRK12849        441 ------------IVRRALEAPLRQIAENAGLDGSVVVAKVLELE-----DGFGFNAATGEYGDLIAAGIIDPVKVTRSAL  503 (542)
T ss_pred             ------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-----CCcceeCCCCccccHHhccCccCHHHHHHHH
Confidence                        57778888999999999999999999999876     3699999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       504 ~~  505 (542)
T PRK12849        504 QN  505 (542)
T ss_pred             HH
Confidence            74

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=2.6e-29  Score=282.13  Aligned_cols=354  Identities=14%  Similarity=0.177  Sum_probs=219.1

Q ss_pred             cccc----HHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHH
Q psy14945        222 IQHP----TASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAR  297 (629)
Q Consensus       222 ~~~~----~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~  297 (629)
                      .+||    .++|+++.++.|++++|||||||+.++++||++|+.||++ ...|.   .++.  .+ +... +.+.++|.+
T Consensus        62 ~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~-Gihp~---~I~~--G~-~~a~-~~~~~~L~~  133 (541)
T PRK12851         62 LEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAA-GANPM---DLKR--GI-DRAV-AAVVEELKA  133 (541)
T ss_pred             CCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhC-CCCHH---HHHH--HH-HHHH-HHHHHHHHH
Confidence            4688    8899999999999999999999999999999999999976 22220   0000  00 0000 223444444


Q ss_pred             hCcEEEeccchhhHHHHHHHhCC--cccccc-----cccCcCCCcccceEEEEEEcCeeEEEEee------cCCC-----
Q psy14945        298 EGIIALRRAKRRNMERLSLACGG--TAMNSV-----EGLEPAHLGYAGSVFEHVLGEEKFTFVEE------CKNP-----  359 (629)
Q Consensus       298 ~~I~vv~~v~~~dl~rIak~tGg--~i~~s~-----~~l~~~~lG~~~~v~e~~i~~~~~~~~~~------~~~~-----  359 (629)
                      ..+.+   -...++..+++....  .....+     ..+-+  -|.+ .+...........++.|      +..+     
T Consensus       134 ~s~~~---~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~--~g~i-~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~  207 (541)
T PRK12851        134 NARPV---TTNAEIAQVATISANGDAEIGRLVAEAMEKVGN--EGVI-TVEESKTAETELEVVEGMQFDRGYLSPYFVTD  207 (541)
T ss_pred             hccCC---CCHHHHHHHHHHhccChHHHHHHHHHHHHHhcc--cCce-EEEEccCCCcceEEEEEEEecCCccccccccC
Confidence            33211   122334444433220  000000     00100  0111 11110000111111111      1111     


Q ss_pred             --------ccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh-------hcC----
Q psy14945        360 --------QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN-------TVK----  420 (629)
Q Consensus       360 --------~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~-------~i~----  420 (629)
                              ..+.|++....-...+++...    +..+.... -+.|+..++..+.+++ +|...+.       .++    
T Consensus       208 ~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~----l~~i~~~~-~~lvi~~~~I~~~al~-~l~~n~i~g~~~i~av~~p~~  281 (541)
T PRK12851        208 ADKMEAELEDPYILIHEKKISNLQDLLPV----LEAVVQSG-KPLLIIAEDVEGEALA-TLVVNKLRGGLKVAAVKAPGF  281 (541)
T ss_pred             CCCCeEEecccEEEEEcCCcCcHHHHHHH----HHHHHHhC-cCEEEECCCCChHHHH-HHHHcCCcCceeEEEEecCcc
Confidence                    245666655553334443333    33332222 2567888999999997 5544431       111    


Q ss_pred             -cchHHHHHHHHHHHhhhhHH------H----HHhcCCC------------------hHH---HHHHHHHhhcC------
Q psy14945        421 -GKSRLGIQAYAEALLIIPKT------I----AVNSGFD------------------AQD---TLVKLQEACGE------  462 (629)
Q Consensus       421 -~~~k~~i~~fa~ALe~ip~~------L----~~NaG~d------------------~~~---vl~~L~~~~~~------  462 (629)
                       ...+..++.+|.+....+-.      +    .+..|..                  +..   -+..|+..-.+      
T Consensus       282 ~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~  361 (541)
T PRK12851        282 GDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYD  361 (541)
T ss_pred             ccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence             24577888888876433211      1    1223321                  100   00111100000      


Q ss_pred             -----------CC-CceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhcc
Q psy14945        463 -----------AP-GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKIT  530 (629)
Q Consensus       463 -----------~~-~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~  530 (629)
                                 .+ ..++-+++.|..++|+.++.+.|++++.+++++       + ++|||||++| ++++..|++++..
T Consensus       362 ~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~-------~-g~VpGGGa~e-~~~s~~L~~~~~~  432 (541)
T PRK12851        362 REKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVE-------E-GIVPGGGVAL-LRAVKALDKLETA  432 (541)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHH-------c-CcccCchHHH-HHHHHHHHHHhcC
Confidence                       00 113446778999999999999999999999997       7 4999999999 9999999999876


Q ss_pred             CCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCccccc
Q psy14945        531 TPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNP  610 (629)
Q Consensus       531 ~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~  610 (629)
                       ++++|++++                  +|++||++||++||+|||+|+.+++++|++.|     .++|+|+.+|++.||
T Consensus       433 -~~~~~~~~~------------------~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-----~~~G~d~~~g~~~d~  488 (541)
T PRK12851        433 -NGDQRTGVE------------------IVRRALEAPVRQIAENAGAEGSVVVGKLREKP-----GGYGFNAATNEYGDL  488 (541)
T ss_pred             -CcHHHHHHH------------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCeeeeCCCCCccch
Confidence             889999999                  47777888999999999999999999999887     269999999999999


Q ss_pred             ccCCccccHHHHHHHhhc
Q psy14945        611 TSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       611 ~~~gI~dp~~vK~~~i~~  628 (629)
                      .+.|||||+.||.++|++
T Consensus       489 ~~~GIiDp~~vk~~al~~  506 (541)
T PRK12851        489 YAQGVIDPVKVVRTALQN  506 (541)
T ss_pred             hhccCEecHHHHHHHHHH
Confidence            999999999999999974

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=8.1e-30  Score=286.95  Aligned_cols=130  Identities=15%  Similarity=0.202  Sum_probs=118.6

Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+|+.++.+.|++++.+++++       + ++|||||++| ++++..|++++.. .+.+|++++      
T Consensus       378 tI~irG~t~~~l~E~er~i~DAl~a~~~a~~-------~-g~VpGGGa~e-~~~s~~L~~~~~~-~~~~q~~i~------  441 (545)
T PRK12852        378 VIRVGGATEVEVKEKKDRVEDALNATRAAVQ-------E-GIVPGGGVAL-LRAKKAVGRINND-NADVQAGIN------  441 (545)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHHHHh-------c-CCCcCchHHH-HHHHHHHHHhhcC-CcHHHHHHH------
Confidence            3456778999999999999999999999997       7 5999999999 9999999999876 788999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++|++.|    +.++|+|+.+|++.||.+.|||||+.||.|+|
T Consensus       442 ------------~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al  505 (545)
T PRK12852        442 ------------IVLKALEAPIRQIAENAGVEGSIVVGKILENK----SETFGFDAQTEEYVDMVAKGIIDPAKVVRTAL  505 (545)
T ss_pred             ------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCeeEeCcCCCcccHHhCcCCcChHHHHHHH
Confidence                        47777888999999999999999999999988    25799999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       506 ~~  507 (545)
T PRK12852        506 QD  507 (545)
T ss_pred             HH
Confidence            74

>KOG0364|consensus

Probab=99.96  E-value=7.7e-30  Score=263.91  Aligned_cols=365  Identities=18%  Similarity=0.232  Sum_probs=239.0

Q ss_pred             eeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc-----cc---c
Q psy14945        220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK-----MH---K  272 (629)
Q Consensus       220 i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~-----~~---~  272 (629)
                      +.+.||+++=+.+-+..||+++|||||||+.+++|.|.+|+.+++..                   ..+     .+   .
T Consensus        68 i~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~  147 (527)
T KOG0364|consen   68 IDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQ  147 (527)
T ss_pred             HhhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccH
Confidence            44679999988888999999999999999999999999999998771                   000     00   0


Q ss_pred             c-cCccccccccccCCCHHHHHHHHHhCcEEEeccc-----hhhHH---HHHHHhCCccccccc--c-cCcCCCcccceE
Q psy14945        273 F-APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-----RRNME---RLSLACGGTAMNSVE--G-LEPAHLGYAGSV  340 (629)
Q Consensus       273 ~-l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-----~~dl~---rIak~tGg~i~~s~~--~-l~~~~lG~~~~v  340 (629)
                      . ++......+..+-+ ....++...-++.+++.+.     ..|+.   ++-|+.||.+.+|..  . +...++-+.+ .
T Consensus       148 ~km~~vi~~~v~tk~~-~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk-m  225 (527)
T KOG0364|consen  148 AKMLRVINSSVGTKFN-SRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK-M  225 (527)
T ss_pred             HHHHhhhhhhhhhhhh-hhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH-H
Confidence            0 00000001111111 1111122222233333321     12333   566778999998842  1 1112222221 0


Q ss_pred             EEEEEcCeeEEEEeecCC------CccEEEEecCCC-ccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH
Q psy14945        341 FEHVLGEEKFTFVEECKN------PQSVTILLKGPN-KHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ  413 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~~------~~~~TIll~g~~-~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~  413 (629)
                       ...+.+.++.+|+ |+-      +...-.+.+-.+ ...++--+..++.+. ..-.+++-..|+.--|..+++.| ||.
T Consensus       226 -rr~IenprivLlD-~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc-~~Ii~v~pDlVitekG~sdla~h-yl~  301 (527)
T KOG0364|consen  226 -RRAIENPRIVLLD-CPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMC-EVIIAVKPDLVITEKGVSDLAQH-YLL  301 (527)
T ss_pred             -HHHhhcCcEEEec-CCccCCCCccccceeeeechhHHHHHHhhHHHHHHHH-HHHHeecccEEEeccchhHHHHH-HHH
Confidence             0124566777776 431      111222222221 122322222333332 22233444456777799999997 554


Q ss_pred             hhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC--CC--------------------CceEE-
Q psy14945        414 NYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE--AP--------------------GVAVG-  469 (629)
Q Consensus       414 ~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~--~~--------------------~~~~G-  469 (629)
                      +-+. .+....+-+..++++|           ||...+...++|...+.+  +|                    ++.|. 
T Consensus       302 k~~iT~~rr~rKtDn~ria~a-----------cga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCti  370 (527)
T KOG0364|consen  302 KANITAIRRLRKTDNNRIARA-----------CGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTI  370 (527)
T ss_pred             hcCchhhhhhhccccchhhhh-----------cCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEE
Confidence            4332 2222233344444444           777766667777666554  21                    11133 


Q ss_pred             -EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhh
Q psy14945        470 -VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRT  548 (629)
Q Consensus       470 -id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~  548 (629)
                       +++.+.+++|+++|++-|++.|-++.+-       +|.++||||++| |.+|..|++.+....+-++|.+.        
T Consensus       371 llrg~skdil~e~ernlqda~~varn~ii-------~PklvPGGGAtE-MAvs~~L~qksa~~~GVekwPY~--------  434 (527)
T KOG0364|consen  371 LLRGPSKDILNEVERNLQDAMGVARNVII-------NPKLVPGGGATE-MAVSHELRQKSALMTGVEKWPYG--------  434 (527)
T ss_pred             EeccCchhHHHHHHHHhhhHHHHHHHhcc-------CCcccCCccHHH-HHHHHHHHHHHhhccchhccchh--------
Confidence             4667889999999999999999999986       999999999999 99999999988889999999998        


Q ss_pred             hhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        549 KVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       549 ~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                                +.+.|||+|||+|++|+|.+++.+++.||+.|.. |...||+|..+|.+.||.+.|+|+|+.+|.|.+++
T Consensus       435 ----------Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~-G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~kt  503 (527)
T KOG0364|consen  435 ----------AVAGALEVIPRTLIQNCGANPIRALTALRAKHKE-GQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKT  503 (527)
T ss_pred             ----------hhhcCceeccHHHHhhcCccHHHHHHHHHHHhcC-cceeecccCceeeEeeeeeccccchhhhhhhhhhH
Confidence                      5778899999999999999999999999999987 67899999999999999999999999999998864

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=1.9e-29  Score=283.14  Aligned_cols=129  Identities=17%  Similarity=0.246  Sum_probs=118.8

Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+|+.++.+.|++++.+++++       + .+|||||++| ++++..|+++ .+.++++|++++       
T Consensus       378 I~irG~t~~~l~E~er~i~Dal~~vk~al~-------~-g~VpGGGa~e-~~~s~~L~~~-~~~~~~~~~~i~-------  440 (542)
T PRK00013        378 IKVGAATEVEMKEKKDRVEDALHATRAAVE-------E-GIVPGGGVAL-LRAAPALEAL-KGLNGDEATGIN-------  440 (542)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHHHHHHHHH-------c-CcccCcHHHH-HHHHHHHHHh-cCCChHHHHHHH-------
Confidence            556788999999999999999999999997       7 4999999999 9999999998 678899999999       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                 +|++||++||++||+|||+|+.+++++|++.| .   .++|+|+.+|++.||.+.|||||+.||+|+|+
T Consensus       441 -----------~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~-~---~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~  505 (542)
T PRK00013        441 -----------IVLRALEAPLRQIAENAGLEGSVVVEKVKNGK-G---KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQ  505 (542)
T ss_pred             -----------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C---CCEeEeCCCCceeehhhccCeecHHHHHHHHH
Confidence                       57778888999999999999999999999988 2   57999999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       506 ~  506 (542)
T PRK00013        506 N  506 (542)
T ss_pred             H
Confidence            4

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=2.2e-29  Score=282.97  Aligned_cols=129  Identities=19%  Similarity=0.241  Sum_probs=118.1

Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|..++|+.++.+.|++++.+++++       + ++|||||++| ++++..|+++ .+.++++|++++      
T Consensus       378 tI~irG~t~~~l~E~er~i~DAl~~~k~a~~-------~-g~VpGGGa~e-~~~s~~L~~~-~~~~~~~~~~i~------  441 (544)
T PRK12850        378 VIRVGGATEVEVKEKKDRVDDALHATRAAVE-------E-GIVPGGGVAL-LRARSALRGL-KGANADETAGID------  441 (544)
T ss_pred             EEEECCCcHHHHHHHHHHHHHHHHHHHHHHh-------c-CCccCCcHHH-HHHHHHHHhc-cCCChHHHHHHH------
Confidence            3456788999999999999999999999997       7 6999999999 9999999998 677889999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++|++.|     .++|+|+.+|++.||.+.|||||+.||.|+|
T Consensus       442 ------------~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al  504 (544)
T PRK12850        442 ------------IVRRALEEPLRQIATNAGFEGSVVVGKVAELP-----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTAL  504 (544)
T ss_pred             ------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCcceeCCCCcccchhhccCcccHHHHHHHH
Confidence                        57777888999999999999999999999876     3699999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       505 ~~  506 (544)
T PRK12850        505 QD  506 (544)
T ss_pred             HH
Confidence            75

>PTZ00114 Heat shock protein 60; Provisional

Probab=99.96  E-value=7.7e-29  Score=279.41  Aligned_cols=131  Identities=22%  Similarity=0.287  Sum_probs=118.4

Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhc--cCCChHHHHHHHHHH
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKI--TTPPSREILLDVART  544 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~--~~~~~~~~~~~~~~~  544 (629)
                      ++-+++.|...+|+.++.++|++++.+++++       ++ +|||||++| ++++..|++++.  +.++++|++++    
T Consensus       390 tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~-------~g-vVpGGGa~e-~~~s~~L~~~~~~~~~~~~~~~~i~----  456 (555)
T PTZ00114        390 VIKVGGASEVEVNEKKDRIEDALNATRAAVE-------EG-IVPGGGVAL-LRASKLLDKLEEDNELTPDQRTGVK----  456 (555)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHHHHHHHHHh-------cC-cccCCcHHH-HHHHHHHHHHhhccCCchHHHHHHH----
Confidence            4556788999999999999999999999985       65 999999999 999999999876  57889999998    


Q ss_pred             HhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHH
Q psy14945        545 SLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQ  624 (629)
Q Consensus       545 al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~  624 (629)
                                    +|++||++||++||+|||+|+.+++++|++   + ++.++|+|+.+|++.||.+.|||||+.||.+
T Consensus       457 --------------~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~-~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~  518 (555)
T PTZ00114        457 --------------IVRNALRLPTKQIAENAGVEGAVVVEKILE---K-KDPSFGYDAQTGEYVNMFEAGIIDPTKVVRS  518 (555)
T ss_pred             --------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---c-CCCCEeEeCCCCcEeeHHhCCCEeCHHHHHH
Confidence                          577788889999999999999999999987   2 4568999999999999999999999999999


Q ss_pred             Hhhc
Q psy14945        625 IINS  628 (629)
Q Consensus       625 ~i~~  628 (629)
                      +|+.
T Consensus       519 al~~  522 (555)
T PTZ00114        519 ALVD  522 (555)
T ss_pred             HHHH
Confidence            9974

>TIGR02348 GroEL chaperonin GroL

Probab=99.96  E-value=1.1e-28  Score=276.64  Aligned_cols=128  Identities=20%  Similarity=0.261  Sum_probs=116.7

Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|..++|+.++.+.|++++.+++++       ++ +|||||++| ++++..|++ +.+.++++|++++       
T Consensus       377 I~irG~t~~~l~E~er~i~Dal~~~r~a~~-------~g-~VpGGGa~e-~~~s~~L~~-~~~~~~~~~~~~~-------  439 (524)
T TIGR02348       377 IKVGAATETEMKEKKLRVEDALNATRAAVE-------EG-IVPGGGVAL-LRAAAALEG-LKGDNEDEAIGID-------  439 (524)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHHHHHHHHh-------cC-CccCCcHHH-HHHHHHHHH-hccCChHHHHHHH-------
Confidence            556778999999999999999999999997       75 999999999 999999999 7778899999998       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                 +|++||++||++||+|||+|+.+++++|++.  . +  ++|+|+.+|++.||.+.|||||+.||.|+|+
T Consensus       440 -----------~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~-~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~  503 (524)
T TIGR02348       440 -----------IVKRALEAPLRQIAENAGKDGAVVAEKVKES--K-G--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQ  503 (524)
T ss_pred             -----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--C-C--CeeEeCcCCcccchhhccCEEcHHHHHHHHH
Confidence                       5777888899999999999999999999875  3 3  3999999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       504 ~  504 (524)
T TIGR02348       504 N  504 (524)
T ss_pred             H
Confidence            5

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=99.95  E-value=9.1e-29  Score=276.00  Aligned_cols=360  Identities=21%  Similarity=0.234  Sum_probs=251.8

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc--c-ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM--H-KFA  274 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~--~-~~l  274 (629)
                      ..||.++++.+..+.|++++|||||+++.++.+||+++..|++.+                   .+     ..  . ..+
T Consensus        40 ~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l  119 (485)
T PF00118_consen   40 INHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESL  119 (485)
T ss_dssp             BSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHH
T ss_pred             hccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhh
Confidence            479999999999999999999999999999999999999998661                   00     00  0 111


Q ss_pred             CccccccccccCCCHHHHHHHHHhCcEEEeccch-h--hHHHHHHHhCCccccccc----ccCcCCCcc--cceEEEEEE
Q psy14945        275 PDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-R--NMERLSLACGGTAMNSVE----GLEPAHLGY--AGSVFEHVL  345 (629)
Q Consensus       275 ~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-~--dl~rIak~tGg~i~~s~~----~l~~~~lG~--~~~v~e~~i  345 (629)
                      ..++.+.+.++ +.....+.|++..+.++..++. .  +.+++.++.|+.+.+|.-    .++......  .+.     +
T Consensus       120 ~~i~~t~l~~k-~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~-----~  193 (485)
T PF00118_consen  120 LNIAKTSLNSK-ISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKK-----I  193 (485)
T ss_dssp             HHHHHHHHTTS-CGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSE-----E
T ss_pred             hhhhccccccc-ccccchhhhhhhHHHHHHhhcccccccchhhhhhccccccccccccceeeeccccccccccc-----c
Confidence            11112233333 2222223444444444422211 1  235667777888876531    133332222  232     3


Q ss_pred             cCeeEEEEee-cCC--CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh-hc
Q psy14945        346 GEEKFTFVEE-CKN--PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN-TV  419 (629)
Q Consensus       346 ~~~~~~~~~~-~~~--~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~-~i  419 (629)
                      .+.+++++.. ...  +...++.++.+++.  ..++.++.+.+.+..+.... -+.|+..++..+.++. +|.+.+. .+
T Consensus       194 ~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~-~~lIi~~~~i~~~~l~-~l~~~~I~~i  271 (485)
T PF00118_consen  194 ENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLG-VNLIISQKSIDDEALQ-YLNKNGILVI  271 (485)
T ss_dssp             ESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTT-SSEEEESSEBTHHHHH-HHHHCTHEEE
T ss_pred             ccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeec-cceeeeecccccccch-hhhhhhhhcc
Confidence            4778888862 111  14688888888754  33344455666665554333 3457888888888885 7877664 44


Q ss_pred             CcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-----------C------------CC--ceEEEEecc
Q psy14945        420 KGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-----------A------------PG--VAVGVDVNS  474 (629)
Q Consensus       420 ~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-----------~------------~~--~~~Gid~~t  474 (629)
                      ....+..+++++++....|           +..+.++.....+           .            ..  .++-+.+.+
T Consensus       272 ~~v~~~~l~~i~~~tg~~i-----------i~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t  340 (485)
T PF00118_consen  272 RRVSKEDLERIARATGASI-----------ISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPT  340 (485)
T ss_dssp             SSEHHHHHHHHHHHHTSBE-----------BSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESS
T ss_pred             ccchHHHHHhhhcccCCcE-----------ecccccccchhhhhhhhhhhcccccccccccccccccccCceEEEecccc
Confidence            5567888888888855443           2222222111111           0            01  123346667


Q ss_pred             CCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHH
Q psy14945        475 GEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVEREL  554 (629)
Q Consensus       475 ~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  554 (629)
                      ...+++.++.++|++++.+.+++       ++++|||||++| ++++..|++++...++.++++++              
T Consensus       341 ~~~l~e~~~~i~dal~~~~~~~~-------~~~vvpGGG~~e-~~l~~~L~~~~~~~~~~~~~~~~--------------  398 (485)
T PF00118_consen  341 EFELEERERSIHDALKVLRSALK-------DGGVVPGGGATE-LHLSKALRKYAKSLSGKEQLAIE--------------  398 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------SSEEEETTTHHH-HHHHHHHHHHHHCSSSHHHHHHH--------------
T ss_pred             chhHHHHHHHHHHHHHHHHHhcc-------CCceeecCcchh-hhhhhhHHHhhhcccCchhhhHH--------------
Confidence            78899999999999999999998       999999999999 99999999999999999999988              


Q ss_pred             HhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        555 ADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       555 ~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                          +|++||+.||++|++|||+|+.+++++|+..|++  +.++|+|+.+|++.||.+.|||||+.+|+++++.
T Consensus       399 ----~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~--~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~  466 (485)
T PF00118_consen  399 ----AFADALESIPKTLAQNAGLDSSEVISKLKSFHNN--GNNYGIDLDTGEIVDMKEAGILDPLLVKISALKS  466 (485)
T ss_dssp             ----HHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHS--TTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred             ----HHHHHHHHhhhhhhhccCCCceeeehhhHhhhcc--ccccCcCccCCceeccccccchhhHHHHHHHHHH
Confidence                4667778899999999999999999999999965  4599999999999999999999999999999974

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>PRK14104 chaperonin GroEL; Provisional

Probab=99.95  E-value=3.3e-28  Score=273.30  Aligned_cols=349  Identities=17%  Similarity=0.179  Sum_probs=214.9

Q ss_pred             cccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCC---HHHHHHHHHhC
Q psy14945        223 QHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGID---PQSLDLFAREG  299 (629)
Q Consensus       223 ~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~---~~~~~~la~~~  299 (629)
                      .||.++|+++.++.|++++||||||++.++++||++|+.|++. ...|.   .+       ..|+.   ..+.++|.+..
T Consensus        67 ~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~-Gi~P~---~I-------~~G~~~A~~~~~~~L~~~a  135 (546)
T PRK14104         67 ENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAA-GMNPM---DL-------KRGIDLAVEAVVADLVKNS  135 (546)
T ss_pred             cChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHC-CCCcc---HH-------HHHHHHHHHHHHHHHHHhc
Confidence            4999999999999999999999999999999999999999976 33330   01       11111   23445555544


Q ss_pred             cEEEeccchhhHHHHHHHhCC-c-cccc-----ccccCcCCCcccceEEEEEEcC--eeEEEEee------cC------C
Q psy14945        300 IIALRRAKRRNMERLSLACGG-T-AMNS-----VEGLEPAHLGYAGSVFEHVLGE--EKFTFVEE------CK------N  358 (629)
Q Consensus       300 I~vv~~v~~~dl~rIak~tGg-~-i~~s-----~~~l~~~~lG~~~~v~e~~i~~--~~~~~~~~------~~------~  358 (629)
                      +.+-   ...++..+++..-. . -+..     +..+-+  -|.+.   ......  ....+++|      +.      +
T Consensus       136 ~~v~---~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~--~g~i~---v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~  207 (546)
T PRK14104        136 KKVT---SNDEIAQVGTISANGDAEIGKFLADAMKKVGN--EGVIT---VEEAKSLETELDVVEGMQFDRGYISPYFVTN  207 (546)
T ss_pred             ccCC---CHHHHHHHHHHHhcCchHHHHHHHHHHHHhcc--CCcee---eEecccccceEEEEEEEEEeCCCCCcchhcC
Confidence            3321   22345555443211 0 0000     001110  02111   000100  11111111      10      1


Q ss_pred             C-------ccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH--h----hhh-hc-----
Q psy14945        359 P-------QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ--N----YKN-TV-----  419 (629)
Q Consensus       359 ~-------~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~--~----~~~-~i-----  419 (629)
                      +       ..+-|++....-...+++.    ..+..+...- -+.++..+++.+.+++ +|.  +    ++. .+     
T Consensus       208 ~~~~~~~~~~~~Ilv~d~~i~~~~~i~----~~l~~i~~~g-~~lvI~~~~i~~~al~-~l~~Nk~~~~~~i~av~~~~~  281 (546)
T PRK14104        208 ADKMRVEMDDAYILINEKKLSSLNELL----PLLEAVVQTG-KPLVIVAEDVEGEALA-TLVVNRLRGGLKVAAVKAPGF  281 (546)
T ss_pred             cccCceeeeCcEEEEehhhhcCHHHHH----HHHHHHHHhC-cCEEEECCCCcHHHHH-HHHhCcccceeeEEEEeccCC
Confidence            1       1233444432222222322    2222222222 3568899999999997 554  2    111 11     


Q ss_pred             CcchHHHHHHHHHHHhhhh--H--------HHHHhcCCC------------------hHHHH---HHHHHhhcC------
Q psy14945        420 KGKSRLGIQAYAEALLIIP--K--------TIAVNSGFD------------------AQDTL---VKLQEACGE------  462 (629)
Q Consensus       420 ~~~~k~~i~~fa~ALe~ip--~--------~L~~NaG~d------------------~~~vl---~~L~~~~~~------  462 (629)
                      ....+..++.+|.+....+  +        .-....|..                  +-.+-   ..|+..-.+      
T Consensus       282 g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~  361 (546)
T PRK14104        282 GDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYD  361 (546)
T ss_pred             CcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence            2234788888888764322  1        011112320                  00000   001000000      


Q ss_pred             ------------CCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhcc
Q psy14945        463 ------------APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKIT  530 (629)
Q Consensus       463 ------------~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~  530 (629)
                                  .+..++-+++.|...+|+.++.|.|++++.+++++       ++ +|||||++| ++++..|+++. .
T Consensus       362 ~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~-------~g-~VpGGGa~e-~~~s~~L~~~~-~  431 (546)
T PRK14104        362 REKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVE-------EG-IVPGGGVAL-LRASEQLKGIK-T  431 (546)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHH-------cC-cCcCchHHH-HHHHHHHHHhh-c
Confidence                        01123446777889999999999999999999997       75 999999999 99999999884 4


Q ss_pred             CCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCccccc
Q psy14945        531 TPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNP  610 (629)
Q Consensus       531 ~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~  610 (629)
                      .+++++++++                  +|++||++||++||+|||+|+.+++++|++.|    ..++|+|+.+|++.||
T Consensus       432 ~~~~~~~~i~------------------~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~~G~d~~~g~~~d~  489 (546)
T PRK14104        432 KNDDQKTGVE------------------IVRKALSAPARQIAINAGEDGSVIVGKILEKE----QYSYGFDSQTGEYGNL  489 (546)
T ss_pred             CChHHHHHHH------------------HHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC----CCcEeEeCCCCceeeh
Confidence            5788999998                  47777888999999999999999999998765    3479999999999999


Q ss_pred             ccCCccccHHHHHHHhhc
Q psy14945        611 TSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       611 ~~~gI~dp~~vK~~~i~~  628 (629)
                      .+.|||||+.||.|+|++
T Consensus       490 ~~~GI~Dp~~vk~~al~~  507 (546)
T PRK14104        490 VSKGIIDPTKVVRTAIQN  507 (546)
T ss_pred             HhcCCEEcHHHHHHHHHH
Confidence            999999999999999974

>CHL00093 groEL chaperonin GroEL

Probab=99.95  E-value=1.9e-28  Score=274.89  Aligned_cols=129  Identities=15%  Similarity=0.195  Sum_probs=117.6

Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhc-cCCChHHHHHHHHHHHh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKI-TTPPSREILLDVARTSL  546 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~-~~~~~~~~~~~~~~~al  546 (629)
                      +-+++.|...+++.++.+.|++++.+++++       ++ +|||||++| ++++..|++++. ..++++|++++      
T Consensus       378 I~irg~t~~~l~E~er~i~DAl~a~r~a~~-------~g-vVpGGGa~e-~~~s~~L~~~~~~~~~g~~~~~i~------  442 (529)
T CHL00093        378 IKVGAATETEMKDKKLRLEDAINATKAAVE-------EG-IVPGGGATL-VHLSENLKTWAKNNLKEDELIGAL------  442 (529)
T ss_pred             EEeccCcHHHHHHHHHHHHHHHHHHHHHHH-------cC-cccCCcHHH-HHHHHHHHHHhccCCChHHHHHHH------
Confidence            446778899999999999999999999997       74 999999999 999999999986 78899999998      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++|+..     +.++|+|+.+|+++||.+.|||||+.||.++|
T Consensus       443 ------------~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al  505 (529)
T CHL00093        443 ------------IVARAILAPLKRIAENAGKNGSVIIEKVQEQ-----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSAL  505 (529)
T ss_pred             ------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-----CCCEeEECCCCcccchHhccCEEcHHHHHHHH
Confidence                        5777888899999999999999999999754     24799999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       506 ~~  507 (529)
T CHL00093        506 QN  507 (529)
T ss_pred             HH
Confidence            74

>KOG0360|consensus

Probab=99.95  E-value=3e-29  Score=261.79  Aligned_cols=355  Identities=20%  Similarity=0.222  Sum_probs=249.3

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH----------------hhcc-------------cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV----------------NLKM-------------HK  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~----------------~~~~-------------~~  272 (629)
                      +.||+++++++-.+.|++++|||||+|+..+.|||++|.+|+...                .+++             +.
T Consensus        70 V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~  149 (545)
T KOG0360|consen   70 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQ  149 (545)
T ss_pred             hcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchH
Confidence            479999999999999999999999999999999999999988660                0011             11


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccchh----------hHHHHHHHhCCcccccccc----cC--cCCCcc
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR----------NMERLSLACGGTAMNSVEG----LE--PAHLGY  336 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~----------dl~rIak~tGg~i~~s~~~----l~--~~~lG~  336 (629)
                      .+..++.+++++|.|.. ..++|.++.+.++..+...          .-..|-+.+|.+..+|+-.    ++  ....+.
T Consensus       150 ~Lin~~ktsmsSK~i~~-ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m  228 (545)
T KOG0360|consen  150 ILINLAKTSMSSKIIGM-DSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMM  228 (545)
T ss_pred             HHHHHHHhhhcceeccc-chHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhcc
Confidence            12333346777877743 4567777776666554311          2345677788887777521    11  111122


Q ss_pred             cceEEEEEEcCeeEEEEe----ecCCCccEEEEecCCCcc----------CHHHHHHHHHhhHHHHHHHhhCCCcccCCC
Q psy14945        337 AGSVFEHVLGEEKFTFVE----ECKNPQSVTILLKGPNKH----------TLAQTKDAVRDGLRAIKNTIDDGAVVPGAG  402 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~----~~~~~~~~TIll~g~~~~----------~l~e~~r~i~dal~vv~~~~~~~~VV~GGG  402 (629)
                      .     .++.+.|++.|.    +.+...+..+++..|.+.          ..+.+++.+.+..         +.|+.-||
T Consensus       229 ~-----~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ga---------nvVLtt~g  294 (545)
T KOG0360|consen  229 P-----LRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGA---------NVVLTTGG  294 (545)
T ss_pred             c-----cccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCC---------cEEEEcCC
Confidence            2     235578888885    223446778888888744          1222223333332         24667778


Q ss_pred             hHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHH------HhhcC--------------
Q psy14945        403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ------EACGE--------------  462 (629)
Q Consensus       403 ~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~------~~~~~--------------  462 (629)
                      ..+|.+ +|+.+.+          +.++.|......+.+++.+|...+..+..|.      +.+.+              
T Consensus       295 Iddmc~-K~~veag----------amAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde  363 (545)
T KOG0360|consen  295 IDDMCL-KYFVEAG----------AMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDE  363 (545)
T ss_pred             ccHHHH-HHHHHcc----------hhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccce
Confidence            777777 4664432          2333344444445555555554444443221      11111              


Q ss_pred             ----CCC----ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCCh
Q psy14945        463 ----APG----VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPS  534 (629)
Q Consensus       463 ----~~~----~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~  534 (629)
                          .++    ..+-+++.+...+|+++|.++|+++|.+..++       .+.+|||||++| ..++-+|+.|+.+.+..
T Consensus       364 ~ilikg~ka~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLe-------s~~vvpGGG~vE-~aLs~yle~~a~s~~sr  435 (545)
T KOG0360|consen  364 LILIKGTKATSASIILRGANDFMLDEMERSLHDALCVLKRTLE-------SKSVVPGGGAVE-TALSIYLENFATSVGSR  435 (545)
T ss_pred             eEEeccCccceeeEEEecCCcccHhhhccchhhHHHHHHHHhc-------cCccccCccHHH-HHHHHHHHhhcccCccH
Confidence                011    12446778899999999999999999999998       999999999999 99999999999999888


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcC-------CCceeeEecCCCcc
Q psy14945        535 REILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEA-------PGVAVGVDVNSGEV  607 (629)
Q Consensus       535 ~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~-------~~~~~Gvd~~~g~i  607 (629)
                      +|..+-                  .|+.||.+||++|+-||+.|+.+++++||+.|+..       ..+|+|+|+.+|.+
T Consensus       436 E~laia------------------efa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~  497 (545)
T KOG0360|consen  436 EQLAIA------------------EFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKI  497 (545)
T ss_pred             HHHHHH------------------HHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEe
Confidence            887765                  47779999999999999999999999999999632       23599999999999


Q ss_pred             cccccCCccccHHHHHHHhhc
Q psy14945        608 LNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       608 ~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      .|..+.|+++|..+|...++.
T Consensus       498 ~dn~~~g~~ep~~~kvksLk~  518 (545)
T KOG0360|consen  498 RDNKSAGSFEPPIVKVKSLKF  518 (545)
T ss_pred             ecceeeeeeccceeehhhhHH
Confidence            999999999999999888763

>cd03333 chaperonin_like chaperonin_like superfamily

Probab=99.94  E-value=4.4e-26  Score=226.96  Aligned_cols=199  Identities=33%  Similarity=0.474  Sum_probs=176.2

Q ss_pred             hhhcccccc-hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccccc
Q psy14945        109 TCNISMEYE-KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVK  187 (629)
Q Consensus       109 ~~~~s~~~~-~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~  187 (629)
                      ++.+|+... .+.++.++++|+... +..      . .+.+.++++|++++||++.||++++|++|++++.|++||++++
T Consensus        10 ts~~sk~~~~~~~l~~l~~~Av~~v-~~~------~-~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~   81 (209)
T cd03333          10 TSLNSKLSSWDDFLGKLVVDAVLKV-GPD------N-RMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLE   81 (209)
T ss_pred             HHhccchhhHHHHHHHHHHHHHHHh-hcc------C-CCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcC
Confidence            445666533 567888888888753 211      0 0456789999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHh
Q psy14945        188 NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVN  267 (629)
Q Consensus       188 n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~  267 (629)
                      ||||++++++|++                                                    .              
T Consensus        82 n~~Ill~~~~le~----------------------------------------------------v--------------   95 (209)
T cd03333          82 NAKILLLDCPLEY----------------------------------------------------V--------------   95 (209)
T ss_pred             CCcEEEEeCCeeE----------------------------------------------------E--------------
Confidence            9999999999952                                                    1              


Q ss_pred             hccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcC
Q psy14945        268 LKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE  347 (629)
Q Consensus       268 ~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~  347 (629)
                                   ++++++|++.++++|.+++|.+++++++++++||+++|||+++++++.+++..+|+|+.+++.++++
T Consensus        96 -------------ii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~  162 (209)
T cd03333          96 -------------VIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE  162 (209)
T ss_pred             -------------EEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC
Confidence                         2358999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhC
Q psy14945        348 EKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD  394 (629)
Q Consensus       348 ~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~  394 (629)
                      +++++|.+|..+..|||+|||+++..++|++|+++||++++++++++
T Consensus       163 ~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~  209 (209)
T cd03333         163 EKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE  209 (209)
T ss_pred             eEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999998888999999999999999999999999999999988753

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=99.94  E-value=5.6e-27  Score=265.07  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=114.2

Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHH-HHHHHHHhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREIL-LDVARTSLRT  548 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~-~~~~~~al~~  548 (629)
                      +.+.|...+++.++.|.|++++.+++++       ++ +|||||++| ++++..|++++.+.++.+|+. +++       
T Consensus       435 vgG~t~~~l~E~er~i~DAl~avk~ai~-------~g-vVpGGGa~e-l~ls~~L~~~~~~~~~~eq~~g~~~-------  498 (600)
T PLN03167        435 VGAQTETELKEKKLRVEDALNATKAAVE-------EG-IVVGGGCTL-LRLASKVDAIKDTLENDEQKVGADI-------  498 (600)
T ss_pred             ecCCcHHHHHHHHHHHHHHHHHHHHHHh-------cC-CCccHHHHH-HHHHHHHHHHHhcCCChhHHHHHHH-------
Confidence            5677889999999999999999999997       77 999999999 999999999988888887765 664       


Q ss_pred             hhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        549 KVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       549 ~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                                 +++||+++|++||+|||+|+.+++++|++.+    +.++|+|+.+|+++||.+.|||||+.||+++|+.
T Consensus       499 -----------~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~----~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~  563 (600)
T PLN03167        499 -----------VKRALSYPLKLIAKNAGVNGSVVSEKVLSND----NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEH  563 (600)
T ss_pred             -----------HHHHHhcchhhhhhcCCCCHHHHHHHHHhcC----CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHH
Confidence                       4456777999999999999999999998543    4589999999999999999999999999999974

>KOG0359|consensus

Probab=99.94  E-value=1.6e-27  Score=246.57  Aligned_cols=359  Identities=26%  Similarity=0.294  Sum_probs=269.9

Q ss_pred             eccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc--------------------------cccc
Q psy14945        221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM--------------------------HKFA  274 (629)
Q Consensus       221 ~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~--------------------------~~~l  274 (629)
                      +.+||.+-++.....+|++.+|||||++|.+++|+|+||+.++..+ +.|                          ++.+
T Consensus        67 QiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eG-lhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L  145 (520)
T KOG0359|consen   67 QIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEG-LHPRIITEGFEAAKNKALEFLEKVSREVDRETL  145 (520)
T ss_pred             hhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcC-CCcchhhhHHHHHHHHHHhhhhccccchhHHHH
Confidence            4589999999999999999999999999999999999999999882 111                          1112


Q ss_pred             CccccccccccCCCHHHHHHHHHhCcEEEeccc---h--------------------hhHHHHHHHhCCcccccccccCc
Q psy14945        275 PDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK---R--------------------RNMERLSLACGGTAMNSVEGLEP  331 (629)
Q Consensus       275 ~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~---~--------------------~dl~rIak~tGg~i~~s~~~l~~  331 (629)
                      .-++.+++..| ++....+.|....+.++..+.   .                    ..++.+...+|++..++...+++
T Consensus       146 ~~va~tsl~Tk-v~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~  224 (520)
T KOG0359|consen  146 KDVARTSLRTK-VHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVED  224 (520)
T ss_pred             HHHHHHhhcCc-ccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhc
Confidence            22222344333 444444444444443333221   1                    13556777788888888888888


Q ss_pred             CCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        332 AHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       332 ~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                      .++-.|+...|++..+-+--||  ++.......++..+.++..+.++++++-.-.++      ++||.....++......
T Consensus       225 a~iL~~NvSLEYEK~Einsgff--Ysta~ere~L~~~eR~Fi~~r~~kiielk~~vc------~fvvinqkGidp~sld~  296 (520)
T KOG0359|consen  225 AYILICNVSLEYEKPEINSGFF--YSTAEEREVLVLAERKFIDQRVRKIIELKRKVC------EFVVINQKGIDPTSLDS  296 (520)
T ss_pred             eEEEEeeccccccccccccchh--ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcc------eEEEecccCCCCCcchh
Confidence            8889999888887777666666  444555566666677777777777777666655      36666554443332222


Q ss_pred             HHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-CC--------C------------ceEE-
Q psy14945        412 LQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-AP--------G------------VAVG-  469 (629)
Q Consensus       412 L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~~--------~------------~~~G-  469 (629)
                      +          .+-+|.++.+|-..-...|.-.||...+..+.+|...+.+ +|        .            ..+. 
T Consensus       297 ~----------a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~Ti  366 (520)
T KOG0359|consen  297 L----------AKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTI  366 (520)
T ss_pred             h----------hhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEE
Confidence            2          5678888999988888888888999988888898887765 31        1            0122 


Q ss_pred             -EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhh
Q psy14945        470 -VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRT  548 (629)
Q Consensus       470 -id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~  548 (629)
                       +.+.+..-+--++.++.|.+....+++.       +.-.+||+|+.| .++.+.|+....+.++.-+++++        
T Consensus       367 Likgpnkht~tQikdairdglrav~ntl~-------d~~~i~Gaga~~-va~~~~lr~~k~~vkgra~~g~~--------  430 (520)
T KOG0359|consen  367 LIKGPNKHTITQIKDAIRDGLRAVKNTLE-------DKCGIPGAGAFE-VALGRHLRESKKSVKGRAYLGVK--------  430 (520)
T ss_pred             EEeCCccchHHHHHHHHhhHHHHHHHHhh-------hcccccCchHHH-HHHHHHHHHhhhccCchhhhhHH--------
Confidence             2344444444566779999999999997       999999999999 99999999888889999888888        


Q ss_pred             hhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        549 KVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       549 ~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                                +|++||++||++||.|+|+|+.+.+.+|...|.. +  ..|+|+.+|+.+|....||||.+.||++.|.+
T Consensus       431 ----------afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~-~--~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s  497 (520)
T KOG0359|consen  431 ----------AFANALLVIPKTLAKNSGLDEQETLVSLKKEHEV-T--LRGLDLFRGEECDPSRKGIYDNYSVKKQLLRS  497 (520)
T ss_pred             ----------HHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhh-h--hcccccccCCccchhhccccchHHHHHHHhhh
Confidence                      6889999999999999999999999999999966 2  56999999999999999999999999998864

>KOG0356|consensus

Probab=99.87  E-value=6.5e-23  Score=219.14  Aligned_cols=376  Identities=19%  Similarity=0.239  Sum_probs=274.7

Q ss_pred             hhhhHHHhcCchhhh----------hhhhccccc-ccccCC----CCCCchhhHHHHhHhhhhcccccc-hhhHHHHHHH
Q psy14945         64 HAQVREERAHPDMQH----------QHGIREEGV-VLNHGA----RHPDMPKSVKNAHILTCNISMEYE-KSDVCIILVK  127 (629)
Q Consensus        64 ~~~~~~e~~~~~~~~----------~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~v~  127 (629)
                      .+++|.-...+++-.          -++|..++. ....+.    -++|+..++...+......|++.+ .++++++|.-
T Consensus        84 aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAti  163 (550)
T KOG0356|consen   84 AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATI  163 (550)
T ss_pred             cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhh
Confidence            566666666666655          333333332 344443    456666677776644444566555 8999999986


Q ss_pred             HHhhhcCCCCCCCCCccccccccceeEEEec-CCCccc-eEEEEeEEEeccCCCCCC-------cccccCeeEEEeeccc
Q psy14945        128 GVVLNHGARHPDMPKSVKNAHILTCNISMEY-EKSDVC-IILVKGVVLNHGARHPDM-------PKSVKNAHILTCNISM  198 (629)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~-Ggs~~d-S~li~Gvv~~~~~~~~~m-------~~~i~n~kIll~~~~L  198 (629)
                      +..   |..++.-.++..+.+++.-+|+.+. |.+..| .++++|+-|+++|.+|++       ..+++||+++|.+..+
T Consensus       164 SAn---gD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki  240 (550)
T KOG0356|consen  164 SAN---GDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKI  240 (550)
T ss_pred             hcC---CcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhh
Confidence            654   4444444566678899999999988 667766 799999999999999975       3568999999999887


Q ss_pred             cccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccc
Q psy14945        199 EYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCS  278 (629)
Q Consensus       199 e~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~  278 (629)
                          +..+.+.|.|+.+      .....+.++..|.--.+-.         ..++             -++.+..+.+|+
T Consensus       241 ----~~v~~ivp~LE~A------~~~~~PLliIAeDi~~eaL---------~tLI-------------lNkLk~glqV~A  288 (550)
T KOG0356|consen  241 ----SSVQSIVPALELA------LAKRRPLLIIAEDIDGEAL---------ATLV-------------LNKLKGGLQVVA  288 (550)
T ss_pred             ----hHHHHHhHHHHHh------hhccCceEEEehhcchhHH---------HHHH-------------hhhhccceeEEE
Confidence                4467788888876      2334444555444222222         2222             122233456665


Q ss_pred             cccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccc------ccccCcCCCcccceEEEEEEcCeeEEE
Q psy14945        279 TSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNS------VEGLEPAHLGYAGSVFEHVLGEEKFTF  352 (629)
Q Consensus       279 ~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s------~~~l~~~~lG~~~~v~e~~i~~~~~~~  352 (629)
                      .   --.++.|                .++..+.+++-.||+.+...      ++..+..++|.|..+.   +..+...+
T Consensus       289 v---KapgfGd----------------nrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evv---vtkd~t~l  346 (550)
T KOG0356|consen  289 V---KAPGFGD----------------NRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVV---VTKDDTML  346 (550)
T ss_pred             E---ecCCCcc----------------hHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEE---EecCccee
Confidence            3   1222222                24567999999999999875      2356678889998766   55555555


Q ss_pred             EeecCC-----------------------------------CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCc
Q psy14945        353 VEECKN-----------------------------------PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAV  397 (629)
Q Consensus       353 ~~~~~~-----------------------------------~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~V  397 (629)
                      +.+-.+                                   ...+++-+.|.++.+++|.+.++.||+++++.+++++ +
T Consensus       347 l~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-i  425 (550)
T KOG0356|consen  347 LKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-I  425 (550)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-c
Confidence            542110                                   1368999999999999999999999999999999999 8


Q ss_pred             ccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCC
Q psy14945        398 VPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEV  477 (629)
Q Consensus       398 V~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i  477 (629)
                      |||||++.+.++..|.+....-....+.+++++.+||..+..++++|+|.++..++.++...       .+|+|..++++
T Consensus       426 vpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~~-------~~gyda~~~ey  498 (550)
T KOG0356|consen  426 VPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLND-------DYGYDAAKGEY  498 (550)
T ss_pred             ccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHhh-------hhhhhhhcccH
Confidence            89999999999999988775223347888999999999999999999999999999998842       46999999999


Q ss_pred             CCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        478 LNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       478 ~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      .|+++.||.||..|.+.++..|...|.
T Consensus       499 ~dlv~~GiidP~kVvr~al~~a~~vas  525 (550)
T KOG0356|consen  499 VDLVEAGIIDPTKVVRTALTDAAGVAS  525 (550)
T ss_pred             HHHHhccCCChHHHHHHhhhhhhHHHH
Confidence            999999999999999999986665543

>KOG0357|consensus

Probab=99.86  E-value=7.5e-23  Score=206.38  Aligned_cols=209  Identities=17%  Similarity=0.149  Sum_probs=160.3

Q ss_pred             HHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhh-hhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHH
Q psy14945        374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK-NTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDT  452 (629)
Q Consensus       374 l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~-~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~v  452 (629)
                      .+++.+.++++...+        +++-.|..+-+.| .|.+.. ..+.+.....++.+|-+           +|...+.-
T Consensus       144 f~emi~~vK~~ga~l--------~icqwgfddeanh-ll~~n~lpavrwVGGpEiEliAia-----------T~grIVpr  203 (400)
T KOG0357|consen  144 FEEMIQQIKETGANL--------AICQWGFDDEANH-LLLQNNLPAVRWVGGPEIELIAIA-----------TGGRIVPR  203 (400)
T ss_pred             HHHHHHHHHhhCCcE--------EEEecccCchhhh-HHhhcCCCceeecCCcceEEEEee-----------cCCeeecc
Confidence            556666666655322        6777788888776 443332 23333222333332222           44544444


Q ss_pred             HHHHHHhhcC-C---------------------C-Cce--EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCe
Q psy14945        453 LVKLQEACGE-A---------------------P-GVA--VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPR  507 (629)
Q Consensus       453 l~~L~~~~~~-~---------------------~-~~~--~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~  507 (629)
                      +++|.....+ +                     + ++.  +=+++.+.-++++.+|+++|++||.+|.++       +.+
T Consensus       204 F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlir-------d~r  276 (400)
T KOG0357|consen  204 FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIR-------DNR  276 (400)
T ss_pred             HhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhh-------cCe
Confidence            5555544443 1                     1 122  335677888999999999999999999998       999


Q ss_pred             EEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHH
Q psy14945        508 VITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQ  587 (629)
Q Consensus       508 iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~  587 (629)
                      +|+|||+.| +.++.++.+.+.+++|.+||+++                  +|++|||+||..||||+|++|++.++.|+
T Consensus       277 ivYgGGaaE-iscslav~~ead~~~g~eqya~r------------------afa~ale~ipmalaensgl~pi~~ls~~k  337 (400)
T KOG0357|consen  277 VVYGGGAAE-ISCALAVSQEADKIPGIEQYAFR------------------AFADALESIPMALAENSGLDPIETLSDVK  337 (400)
T ss_pred             eEecCchHH-hhhhhHhhHhhccCCcHHHHHHH------------------HHHHHHhhcchhhhhccCCCchhhhhHhH
Confidence            999999999 99999999999999999999998                  68888889999999999999999999999


Q ss_pred             HHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        588 EACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       588 ~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +.+.+.++.++|||+..-.--||++.+|+||+..|+|.|.+
T Consensus       338 a~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~l  378 (400)
T KOG0357|consen  338 ARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISL  378 (400)
T ss_pred             HHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHH
Confidence            99976567899999988888899999999999999999864

>KOG0230|consensus

Probab=99.80  E-value=2.9e-19  Score=208.04  Aligned_cols=216  Identities=22%  Similarity=0.258  Sum_probs=189.7

Q ss_pred             CCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCcccccccc
Q psy14945        137 HPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAK  216 (629)
Q Consensus       137 ~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~  216 (629)
                      .++.+.+..|...++++|++|+||+..||+++.||++.++.+|..|+..+++|||+++.++|+|++...+.         
T Consensus       349 kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~l---------  419 (1598)
T KOG0230|consen  349 KPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQL---------  419 (1598)
T ss_pred             CcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccc---------
Confidence            45677777899999999999999999999999999999999999999999999999999999998776543         


Q ss_pred             ceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHH
Q psy14945        217 GIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFA  296 (629)
Q Consensus       217 ~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la  296 (629)
                             .....++++|.++++..        |.+|.             ..+|    .+    ++..+++++.++++|.
T Consensus       420 -------sS~etvlqqE~e~lk~~--------varI~-------------s~~p----~v----llVeksVS~~aqe~L~  463 (1598)
T KOG0230|consen  420 -------SSIETVLQQEKEYLKKV--------VARIE-------------SLRP----DV----LLVEKSVSRIAQELLL  463 (1598)
T ss_pred             -------cchHHHHhhHHHHHHHH--------HHHHH-------------hcCC----Ce----EEEechHHHHHHHHhh
Confidence                   24566778888899888        88887             4444    22    4569999999999999


Q ss_pred             HhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEc-----CeeEEEEeecCCCccEEEEecCCCc
Q psy14945        297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG-----EEKFTFVEECKNPQSVTILLKGPNK  371 (629)
Q Consensus       297 ~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~-----~~~~~~~~~~~~~~~~TIll~g~~~  371 (629)
                      ..+|.++-+++...++||+++||+.|+.+++.+....+|+|..++..++.     .++++||++|+.+.+|||+|||...
T Consensus       464 ~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~  543 (1598)
T KOG0230|consen  464 DKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSL  543 (1598)
T ss_pred             ccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCH
Confidence            99999999999999999999999999999999999999999988865544     4678899999999999999999999


Q ss_pred             cCHHHHHHHHHhhHHHHHHHhhCCCc
Q psy14945        372 HTLAQTKDAVRDGLRAIKNTIDDGAV  397 (629)
Q Consensus       372 ~~l~e~~r~i~dal~vv~~~~~~~~V  397 (629)
                      ..+.++++.++.++.++++...+..+
T Consensus       544 ~eLkkVK~Vvq~~v~aay~l~LE~Sf  569 (1598)
T KOG0230|consen  544 EELKKVKHVVQYLVFAAYHLALETSF  569 (1598)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999988877655433

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

Probab=99.11  E-value=4.1e-11  Score=123.41  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=75.5

Q ss_pred             ceEeecCCCCCCCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCCcccCcchhhhHHHhcCchhhhhhh
Q psy14945          2 VELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQHQHG   81 (629)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~~~~~~~~~~~~~e~~~~~~~~~~~   81 (629)
                      |.|.+++|++..||+|++|+|++++..|++||++++||+|+++|++|||+|++..   .++.+++.+.|++++++++++.
T Consensus        50 I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~---~~~~~~~~~~E~~~l~~~v~kI  126 (261)
T cd03334          50 VKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENK---LLSLDPVILQEKEYLKNLVSRI  126 (261)
T ss_pred             eEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccccCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999852   2445889999999999999998


Q ss_pred             hcccccc
Q psy14945         82 IREEGVV   88 (629)
Q Consensus        82 ~~~~~~~   88 (629)
                      ..-+.-+
T Consensus       127 ~~~g~nv  133 (261)
T cd03334         127 VALRPDV  133 (261)
T ss_pred             HhcCCCE
Confidence            7655433

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.

>KOG0356|consensus

Probab=98.94  E-value=4.2e-09  Score=114.01  Aligned_cols=124  Identities=25%  Similarity=0.372  Sum_probs=101.9

Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                      +-+.+.-=+++....+.|++++.+.++        .+++|||||..- ..++..|+++...-+..++.+++++..||+.|
T Consensus       395 vGg~se~Ev~ekk~rv~dalnat~aav--------eeGivpGGG~al-l~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P  465 (550)
T KOG0356|consen  395 VGGHSEVEVNEKKDRVEDALNATRAAV--------EEGIVPGGGTAL-LRAIPVLDELKATNNFDQKVGVEIVKKALRLP  465 (550)
T ss_pred             ecCcchhhhhhhhhhHHHHHHHHHHHh--------hcCcccCCchHH-HHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence            344455456677778888776655555        899999777655 99999999987633456777799999999987


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                      .                  +++|.|||.|+..++.+++.   .    .+|+|..+|+++||.+.||+||.+|-+.++.
T Consensus       466 ~------------------~~IakNAGvdg~~vv~Kv~~---~----~~gyda~~~ey~dlv~~GiidP~kVvr~al~  518 (550)
T KOG0356|consen  466 A------------------QTIAKNAGVDGSVVVEKVLN---D----DYGYDAAKGEYVDLVEAGIIDPTKVVRTALT  518 (550)
T ss_pred             H------------------HHHHHhcCCchHHHHHHHHh---h----hhhhhhhcccHHHHHhccCCChHHHHHHhhh
Confidence            7                  77999999999999999982   1    5999999999999999999999999998874

>cd03333 chaperonin_like chaperonin_like superfamily

Probab=98.63  E-value=2.5e-08  Score=99.38  Aligned_cols=72  Identities=31%  Similarity=0.442  Sum_probs=59.7

Q ss_pred             CceEeecCCCCCCCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCC-cccCcchhhhHHHhcCchhhhh
Q psy14945          1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP-WCATPGHAQVREERAHPDMQHQ   79 (629)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~-~~~~~~~~~~~~e~~~~~~~~~   79 (629)
                      .|.|.+++|++.+||++++|+++|++..||.||++++||+||++|++|||      + ++..           -+++.++
T Consensus        45 ~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~le~------vii~~~-----------~I~~~al  107 (209)
T cd03333          45 VIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------VVIAEK-----------GIDDLAL  107 (209)
T ss_pred             HEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCeeE------EEEecC-----------cccHHHH
Confidence            37899999999999999999999999999999999999999999999999      4 3221           1456666


Q ss_pred             hhhccccccc
Q psy14945         80 HGIREEGVVL   89 (629)
Q Consensus        80 ~~~~~~~~~~   89 (629)
                      +.+.+.++..
T Consensus       108 ~~l~~~~I~~  117 (209)
T cd03333         108 HYLAKAGIMA  117 (209)
T ss_pred             HHHHHCCCEE
Confidence            6666655543

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.

>KOG0230|consensus

Probab=96.68  E-value=0.0013  Score=79.38  Aligned_cols=74  Identities=20%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             ceEeecCCCCCCCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCCcccCcchhhhHHHhcCchhhh
Q psy14945          2 VELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAHPDMQH   78 (629)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~~~~~~~~~~~~~e~~~~~~~~   78 (629)
                      |++-.+.+|.-.||.+|+|+|.-+-..|-.|+.+++|+.|+++-.+|||++-..++....+  .++| |++|.+..+
T Consensus       364 VkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~et--vlqq-E~e~lk~~v  437 (1598)
T KOG0230|consen  364 VKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIET--VLQQ-EKEYLKKVV  437 (1598)
T ss_pred             eEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHH--HHhh-HHHHHHHHH
Confidence            6788899999999999999999999999999999999999999999999999876654444  5666 788888877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	629
3iyg_Z	517	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		4e-88
3iyg_Z	517	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		6e-15
3iyg_Z	517	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		3e-08
3p9d_F	546	The Crystal Structure Of Yeast Cct Reveals Intrinsi		2e-68
3p9d_F	546	The Crystal Structure Of Yeast Cct Reveals Intrinsi		7e-08
1a6d_A	545	Thermosome From T. Acidophilum Length = 545		1e-38
1q3s_A	548	Crystal Structure Of The Chaperonin From Thermococc		2e-38
1q2v_A	548	Crystal Structure Of The Chaperonin From Thermococc		2e-38
1q3r_A	548	Crystal Structure Of The Chaperonin From Thermococc		2e-38
3izh_A	513	Mm-Cpn D386a With Atp Length = 513		1e-35
3izn_A	491	Mm-Cpn Deltalid With Atp Length = 491		1e-35
3iyf_A	521	Atomic Model Of The Lidless Mm-Cpn In The Open Stat		1e-35
3los_A	543	Atomic Model Of Mm-Cpn In The Closed State Length =		1e-35
3rus_A	543	Crystal Structure Of Cpn-Rls In Complex With Adp Fr		2e-35
3izk_A	491	Mm-Cpn Rls Deltalid With Atp Length = 491		2e-35
3izi_A	513	Mm-Cpn Rls With Atp Length = 513		2e-35
3ko1_A	553	Cystal Structure Of Thermosome From Acidianus Tengc		8e-35
3j02_A	491	Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun		1e-34
3iyg_G	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		1e-30
3aq1_B	500	Open State Monomer Of A Group Ii Chaperonin From Me		7e-30
1a6d_B	543	Thermosome From T. Acidophilum Length = 543		8e-28
3iyg_H	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-24
3iyg_A	529	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		5e-24
3p9d_A	559	The Crystal Structure Of Yeast Cct Reveals Intrinsi		1e-23
3iyg_B	513	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		1e-21
3p9d_G	550	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-21
3p9d_B	527	The Crystal Structure Of Yeast Cct Reveals Intrinsi		5e-21
3iyg_E	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		4e-19
3p9d_H	568	The Crystal Structure Of Yeast Cct Reveals Intrinsi		1e-15
3p9d_E	562	The Crystal Structure Of Yeast Cct Reveals Intrinsi		2e-15
1gml_A	178	Crystal Structure Of The Mouse Cct Gamma Apical Dom		2e-12
3iyg_D	518	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-12
3p9d_C	590	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-12
3iyg_Q	512	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		5e-12
1ass_A	159	Apical Domain Of The Chaperonin From Thermoplasma A		1e-10
1e0r_B	159	Beta-Apical Domain Of Thermosome Length = 159		5e-08
3p9d_D	528	The Crystal Structure Of Yeast Cct Reveals Intrinsi		1e-07

>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517

Iteration: 1
 Score =  322 bits (825), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/358 (49%), Positives = 237/358 (66%), Gaps = 42/358 (11%)
Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
           KS+    L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+          +  G  
Sbjct: 191 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VNSGFF 241
Query: 220 NQIQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
            +       L+                     I + +K+    I E+  K+      C  
Sbjct: 242 YKSAEEREKLVKAERK---------------FIEDRVKK----IIELKKKV------CGD 276
Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP-AH 333
           SD+      + GIDP SLD  A+EGIIALRRAKRRNMERL+LACGG A+NS++ L P   
Sbjct: 277 SDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCL 336
Query: 334 LGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTID 393
           LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN ID
Sbjct: 337 LGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAID 395
Query: 394 DGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTL 453
           DG VVPGAGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TL
Sbjct: 396 DGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETL 455
Query: 454 VKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
           VK+Q    E+ G  VGVD+N+GE +    AGI+DN  VK+Q+++S  +   +  ++ E
Sbjct: 456 VKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDE 512

>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 499 WIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLL 558
           +I  GLHPR+ITEGF  A+ KAL+ LE +K++    RE L+DVARTSLRTKV  ELAD+L
Sbjct: 101 YISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVL 160
Query: 559 AE 560
            E
Sbjct: 161 TE 162

>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           NSGFD Q+TLVK+Q    E+ G  VGVD+N+GE +    AGI+DN  VK+Q+++S
Sbjct: 446 NSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499

>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546

Iteration: 1
 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 200/337 (59%), Gaps = 35/337 (10%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
            +KG+VL+HG RHPDMP  VKNA++L  N+S+EYEK+       E++     ++  Q   
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT-------EVNSGFFYSSADQRDK 261
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
            +   R                  V  +L K     I ++  ++    PD       + G
Sbjct: 262 LAASERK----------------FVDAKLKK-----IIDLKNEVCGMDPDKGFVIINQKG 300
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           IDP SLD+FA+  I+ALRRAKRRNMERL L  GG A NSVE L P  LG++G V++  +G
Sbjct: 301 IDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG 360
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           EEKFT+V E  +P+S TIL+KG   + LAQTKDAVRDGLRA+ N + D  ++PGAGAF +
Sbjct: 361 EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYI 420
Query: 407 AAWHALQNY---KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
           A    L++    K   KGK++ GI+A+AEALL+IPKT+  NSGFD  D L  +++   +A
Sbjct: 421 ALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480
Query: 464 PGV----AVGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
                   VGVD+N G+  +PT  GI+D+  V R  I
Sbjct: 481 QDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAI 517

>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 499 WIISGLHPRVITEGFTQARLKALEVLESLKITT---PPSREILLDVARTSLRTKVERELA 555
           +I  G+HPR+IT+GF  AR ++++ L+  KI+       RE LL VAR+SL TKV+ +L 
Sbjct: 108 FIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLT 167
Query: 556 DLL 558
           ++L
Sbjct: 168 EVL 170

>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545

Iteration: 1
 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 173/334 (51%), Gaps = 39/334 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
            + G+V++    H  MP  VKNA I   + ++E +K+     + E  +      QI  P+
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-----EIEAKV------QISDPS 260
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                                    I + L Q      ++  K+ K   +     +   G
Sbjct: 261 K------------------------IQDFLNQETNTFKQMVEKIKKSGANVVLCQK---G 293
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    A+EGI A+RR K+ +ME+L+ A G   +  ++ L P+ LG A +V E  +G
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG 353
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           +++ TFV  CKNP++V+IL++G   H +++ + A+ D +R +  T +DG  + G GA E 
Sbjct: 354 DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEA 413
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L  Y N+V G+ +L I+A+A+AL IIP+T+A N+G D  +TL+KL+ A  E   +
Sbjct: 414 ELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLK-ADDEKGRI 472
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWI 500
           +VGVD+++  V +  + G+ D L VK   + S +
Sbjct: 473 SVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAV 506

>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+ GI+A+RR K+ +ME+L+ A G   + +V+ L P  LGYA  V E 
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            L  E   FVE CKNP++VTIL++G  +H + + + A+ D ++ +K+ ++DGAV+P  GA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     L  Y   V GK  L I+ +A+AL IIPKT+A N+G D  + LVK+  +  + 
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVI-SEHKN 472
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            G+ +G+DV  G+  +    GI + L VK+Q I S
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507

>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+ GI+A+RR K+ +ME+L+ A G   + +V+ L P  LGYA  V E 
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            L  E   FVE CKNP++VTIL++G  +H + + + A+ D ++ +K+ ++DGAV+P  GA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     L  Y   V GK  L I+ +A+AL IIPKT+A N+G D  + LVK+  +  + 
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVI-SEHKN 472
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            G+ +G+DV  G+  +    GI + L VK+Q I S
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507

>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+ GI+A+RR K+ +ME+L+ A G   + +V+ L P  LGYA  V E 
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            L  E   FVE CKNP++VTIL++G  +H + + + A+ D ++ +K+ ++DGAV+P  GA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     L  Y   V GK  L I+ +A+AL IIPKT+A N+G D  + LVK+  +  + 
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVI-SEHKN 472
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            G+ +G+DV  G+  +    GI + L VK+Q I S
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507

>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + +++ L    LG AG V E 
Sbjct: 281 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 340
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 341 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 400
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 401 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 460
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 461 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 495

>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + +++ L    LG AG V E 
Sbjct: 259 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 318
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 319 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 378
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 379 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 438
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 439 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473

>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + +++ L    LG AG V E 
Sbjct: 265 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 324
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 325 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 384
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 385 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 444
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 445 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 479

>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543

Iteration: 1
 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + +++ L    LG AG V E 
Sbjct: 287 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 346
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 347 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 406
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 407 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 466
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 467 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501

>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + ++  L    LG AG V E 
Sbjct: 287 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 346
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 347 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 406
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 407 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 466
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 467 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501

>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + ++  L    LG AG V E 
Sbjct: 259 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 318
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 319 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 378
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 379 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 438
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 439 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473

>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + ++  L    LG AG V E 
Sbjct: 281 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 340
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+
Sbjct: 341 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 400
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 401 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 460
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 461 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 495

>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553

Iteration: 1
 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 165/332 (49%), Gaps = 38/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV G+V++    HP MPK ++NA I   + S+E EK       PE+        +I  PT
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEK-------PELDAE----IRINDPT 270
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                                    + + L + +  I E   K+ K     +     + G
Sbjct: 271 Q------------------------MQKFLDEEENLIKE---KVDKILATGANVIICQKG 303
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    A++G++A+RRAK+ ++E+L+ A GG  +++++ +    LGYA  + E  +G
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG 363
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           E+K  FVE  KNP+S++IL++G  +  + +T+ A+RD L  + + I DG  + G GA E+
Sbjct: 364 EDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEI 423
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L+ Y   V GK +L ++AYA AL  +   +  N+GFD  D L+KL+         
Sbjct: 424 EIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNK 483
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G+D+ +G+ ++    G+ +   VK   I +
Sbjct: 484 WYGIDLYAGQPVDMWQKGVIEPALVKMNAIKA 515

>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           + GID  +    A+EGI+A RR K+ +ME+L+ A G   + +++ L    LG AG V E 
Sbjct: 259 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 318
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +  +   FVEECK+P++VT+L++G  +H + +   AV   +  +  TI+DG +V G G+
Sbjct: 319 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGS 378
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV     L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A    
Sbjct: 379 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 438
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                G++V +G V +    G+ + L VK Q I S
Sbjct: 439 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473

>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)
Query: 162 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQ 221
           D C++  +GV++N    HP M + +KN  I+  + S+EY+K   G  Q +I + +     
Sbjct: 199 DSCVL--RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK---GESQTDIEITREED-- 251
Query: 222 IQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSD 281
                                            +L+  + YI ++   + +  PD   ++
Sbjct: 252 ------------------------------FTRILQMEEEYIQQLCEDIIQLKPDVVITE 281
Query: 282 RYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
           +   GI   +     R  I A+RR ++ +  R++ ACG   ++  E L    +G    + 
Sbjct: 282 K---GISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLL 338
Query: 342 E-HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
           E   +G+E FTF+ ECK+P++ TILL+G +K  L++ +  ++D ++  +N + D  +VPG
Sbjct: 339 EIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPG 398
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC 460
            GA E+A  HAL      + G  +   +A A+AL +IP+T+  N G      L  L+   
Sbjct: 399 GGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKH 458
Query: 461 GEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQ 494
            +      GV+  +G +++    GI++ L VK Q
Sbjct: 459 TQENCETWGVNGETGTLVDMKELGIWEPLAVKLQ 492

>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500

Iteration: 1
 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 47/336 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+ G+V++    HP+MP+ V+NA IL  +  +E+ K+       EI        +I  P 
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV---DSEI--------KITSPG 214
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY--- 283
                                          Q  +++ +    M + A     S      
Sbjct: 215 -------------------------------QMQLFLDQEEKMMREMAEKVIASGANVVF 243
Query: 284 -RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
            + GID  +     + GI A+RR K+ +++RLS   G T +  ++ +    +G AG V E
Sbjct: 244 CQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEE 303
Query: 343 HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
             +   K T+V  C+N ++VT+LL G  +H +     A+ D L  +   I+DG VV G G
Sbjct: 304 KEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363
Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
           + EV     L  Y +T+KG+ +L +  +AEAL +IP  +A N+G D  D +V+L+ +  E
Sbjct: 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELR-SQHE 422
Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                 G++V +GEV++     + + L +K Q IN+
Sbjct: 423 KGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINA 458

>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543

Iteration: 1
 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 166/332 (50%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+ G++++    HP MP  VK+A I   +  +E +K       PE         +I+ P+
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK-------PEFDTNL----RIEDPS 261
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                                   +I + L Q +  + E+  K+     +   + +   G
Sbjct: 262 ------------------------MIQKFLAQEENMLREMVDKIKSVGANVVITQK---G 294
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    +R GI A+RR K+ +M++L+ A G + +++++ +  + LG A  V +  +G
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG 354
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           E+  TFV  CKNP++V+IL++G  +H + + + ++ D L  + + ++DGA   G GA   
Sbjct: 355 EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAA 414
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L++Y   + G+ +L I+ +A+A+  IP+ +A N+G D  D L+KL+    +    
Sbjct: 415 EIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNK- 473
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G++V +GE+ +    G+ + + V +Q I S
Sbjct: 474 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 505

>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 1/198 (0%)
Query: 295 FAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE 354
           FA   +    R    +++R  +ACGG+   SV  L    LG      E  +G E++ F  
Sbjct: 294 FADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFT 353
Query: 355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN 414
            C   ++ TI+L+G  +  + +T+ ++ D +  ++  I + +VV G GA E+     L++
Sbjct: 354 GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRD 413
Query: 415 YKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNS 474
           Y  T+ GK +L I AYA+AL IIP+ +  N+GFDA + L KL+    +  G+  GVD+N+
Sbjct: 414 YSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINT 472
Query: 475 GEVLNPTSAGIYDNLTVK 492
            ++ +   A +++   V+
Sbjct: 473 EDIADNFEAFVWEPAMVR 490

>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 13/220 (5%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV------EGLEPAHLGYAGS 339
           GID   L  F   G +A+RR  +R+++R++ A G T ++++      E  E + LG A  
Sbjct: 285 GIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEE 344
Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
           V +  + +++   ++  K   S +++L+G N     + + ++ D L  +K  ++  +VVP
Sbjct: 345 VVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVP 404
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
           G GA E A    L+NY  ++  + +L I  +A +LL+IP T+AVN+  D+ D + KL+  
Sbjct: 405 GGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAF 464
Query: 460 CGEA---PGVA----VGVDVNSGEVLNPTSAGIYDNLTVK 492
             EA   P       +G+D+ +G+  +   AG+++   VK
Sbjct: 465 HNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVK 504

>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGT---AMNSVEG---LEPAHLGYAGS 339
           GID   L  F    I+ +RR K+ ++ R++ A G T   +M+++EG    E ++LG    
Sbjct: 301 GIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDE 360
Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
           V +    +++   ++      S +I+L+G N ++L + + ++ D L  +K T++ G VVP
Sbjct: 361 VVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVP 420
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ 457
           G G  E A    L N+  TV  + +L I  +A ALLIIPKT+AVN+  D+ + + KL+
Sbjct: 421 GGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLR 478

>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 1/205 (0%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
           LF   G++A+  A    +ERL+L  GG   ++ +  E   LG    + E ++GE+K    
Sbjct: 290 LFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHF 349
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
                 ++ TI+L+G  +  L + + ++ D L  +  T+ D   V G G  E+   HA+ 
Sbjct: 350 SGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 409
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
              +   GK  + +++YA+AL ++P  IA N+G+D+ D + +L+ A  E    A G+D+ 
Sbjct: 410 QLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTA-GLDMK 468
Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
            G + + +  GI ++  VKRQ++ S
Sbjct: 469 EGTIGDMSVLGITESFQVKRQVLLS 493

>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
            FA   I    R    +M R+  A GG+  ++   ++P HLG      E  +G E++   
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLF 365
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
           + C   ++ T+LL+G  +  +A+ + ++ D +  +K  + +  +V G GA E+     L+
Sbjct: 366 QGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLR 425
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
           +Y  T+ GK ++ I A+A+AL +IP+ +  N+GFDA + L KL+ A
Sbjct: 426 DYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLA 471

>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
           LF   GI ++  A    +ERL+L  GG  +++ +      LG    + E +LGE+ F   
Sbjct: 297 LFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKF 356
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
             CK  ++ TI+L+G    TL + + ++ D L  +  T  +   V G G  E+    A+ 
Sbjct: 357 SGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD 416
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
                + GK  L ++A+A AL  +P  +A N+GFD+ + + KL+ +       + G+D+N
Sbjct: 417 TEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS-GLDLN 475
Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
           +G + +    GI ++  +KR +++S
Sbjct: 476 NGTIADMRQLGIVESYKLKRAVVSS 500

>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 40/307 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+KGV+++    HP MPK V++A I       E  K  +  H+ +++  +      ++  
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP-KTKHKLDVTSVEDFKALQKYEK 260
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                                      E+++Q  I     NL + ++            G
Sbjct: 261 EKF-----------------------EEMIRQ--IKETGANLAVCQW------------G 283
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
            D ++  L  +  + A+R      +E +++A GG  +     L    LG+AG V E   G
Sbjct: 284 FDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFG 343
Query: 347 --EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
             ++K   +E+CKN ++VTI ++G NK  + + K ++ D L  I+N I D  VV G GA 
Sbjct: 344 TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 403
Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
           E++   A+    +      +  ++A+A+AL +IP  +A NSG +   T+ +++    +  
Sbjct: 404 EISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEV 463
Query: 465 GVAVGVD 471
             A+G+D
Sbjct: 464 NPALGID 470

>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           G+   +L    R GI+ L+   +  + RL   CG T +  +    P  LG   +V    +
Sbjct: 304 GVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEI 363
Query: 346 GEEKFTFV--EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTI--DDGAVVPGA 401
           G ++ T    E+ +  ++ TI+L+G  ++ L   + A+ DG+ A+K  +    G ++PGA
Sbjct: 364 GGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGA 423
Query: 402 GAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG 461
           GA E+     +  Y     G  +L I+ +A A  ++P+T+A  +G D  + L  L  A  
Sbjct: 424 GATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHN 483
Query: 462 EAPGVAV-------GVDVNSGE----VLNPTSAGIYDNLTVKRQIIN 497
                AV       GVD++ GE    V +     IYD L  K+  IN
Sbjct: 484 VTEPGAVKTDHLYKGVDID-GESDEGVKDIREENIYDMLATKKFAIN 529

>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
           G D ++  L  +  + A+R    + +E ++++  G  +   + L    LG    ++E   
Sbjct: 326 GFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEF 385
Query: 346 G--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
           G  +++   +E+ K  ++VT  ++G NK  + + + A+ D L  ++N + D  VV G GA
Sbjct: 386 GTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGA 445
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            EV    A+    +  +G  +   + +A+AL  IP T+A NSG D   TL  L+    + 
Sbjct: 446 AEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKE 505
Query: 464 PGVAVGVD 471
               +GVD
Sbjct: 506 KISNIGVD 513

>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 162 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQ 221
           D C++  +GV++N    HP M + +KN  I+  + S+EY+K   G  Q +I + +     
Sbjct: 3   DSCVL--RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK---GESQTDIEITREED-- 55
Query: 222 IQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSD 281
                                            +L+  + YI ++   + +  PD   ++
Sbjct: 56  ------------------------------FTRILQMEEEYIHQLCEDIIQLKPDVVITE 85
Query: 282 RYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
           +   GI   +     R  + A+RR ++ +  R++ ACG   ++  E L    +G    + 
Sbjct: 86  K---GISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLL 142
Query: 342 E-HVLGEEKFTFVEECKNPQSVTILLKG 368
           E   +G+E FTF+ +CK+P++ TILL+G
Sbjct: 143 EIKKIGDEYFTFITDCKDPKACTILLRG 170

>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 7/201 (3%)
Query: 283 YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
            R  +   +L    +  I+ ++  +R ++E +    G   +  V+      LG A    E
Sbjct: 284 LRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEE 343
Query: 343 HVL-GEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
             L G  K   +  C +P ++VTI+++G NK  + + + ++ D L  I+  +   A++ G
Sbjct: 344 VSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAG 403
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE-- 458
            GA E+     L  Y  T+ G     I+A+A+A+ +IP T+A N+G +   T+ +L+   
Sbjct: 404 GGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRH 463
Query: 459 ACGEAPGVAVGVDVNSGEVLN 479
           A GE      G++V  G + N
Sbjct: 464 AQGEK---TTGINVRKGGISN 481

>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 149/394 (37%), Gaps = 96/394 (24%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           ++KGV+LN    HP M + ++N  ++  +  +EY+K   G  Q  I + K          
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKK---GESQTNIEIEK---------- 265
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                                 +L I E          +V L   +      T      G
Sbjct: 266 ----------------EEDWNRILQIEE---------EQVQLMCEQILAVRPTLVITEKG 300
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE-HVL 345
           +   +     + G   LRR K+ +  R++   G T +N VE L+ + +G    +F+  ++
Sbjct: 301 VSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMI 360
Query: 346 GEEKFTFVEECKNPQSVT-----ILLKGPNKHTLAQTKDAV------------------- 381
           G+E F+F++ CK P S +        KG  K    +   AV                   
Sbjct: 361 GDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGH 420
Query: 382 -----------------RDGLRAIKNTID----DGAVV-----------PGAGAFEVAAW 409
                            R G + I N ID    D   V           PG GA E+A  
Sbjct: 421 HHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVS 480
Query: 410 HALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVG 469
             L      ++G  +   QA A+A+  IP+T+  N+G D    L +L+    +      G
Sbjct: 481 VKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NFTTG 539
Query: 470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISG 503
           +D + G++++  S GI++   +K+Q + + I S 
Sbjct: 540 IDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESA 573

>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 4/194 (2%)
Query: 297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFT-FVEE 355
           +  I+ +R   + ++ RL    G TA+  +       +G+  SV+   +G+ +   F  E
Sbjct: 291 KYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHE 350
Query: 356 CKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY 415
            ++    TI+L+G   + +   + AV DG+   K    D  +VPG GA E+     + +Y
Sbjct: 351 KEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY 410
Query: 416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG 475
             T  G  +  I+ +AEA   IP+ +A NSG  A + + KL  A  +     VG+D+ + 
Sbjct: 411 GETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLY-AVHQEGNKNVGLDIEAE 469
Query: 476 --EVLNPTSAGIYD 487
              V +   AG+ D
Sbjct: 470 VPAVKDMLEAGVLD 483

>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
Query: 170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASL 229
           G+V++    H  MP  VKNA I   + ++E +K+       EI  AK    QI  P+   
Sbjct: 3   GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-------EIE-AKV---QISDPSK-- 49
Query: 230 IARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP 289
                                 I + L Q      ++  K+ K   +     +   GID 
Sbjct: 50  ----------------------IQDFLNQETNTFKQMVEKIKKSGANVVLCQK---GIDD 84
Query: 290 QSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEK 349
            +    A+EGI A+RR K+ +ME+L+ A G   +  ++ L P+ LG A +V E  +G+++
Sbjct: 85  VAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDR 144
Query: 350 FTFVEECKN 358
            TFV  CKN
Sbjct: 145 MTFVMGCKN 153

>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASL 229
           G++++    HP MP  VK+A I   +  +E +K       PE         +I+ P+   
Sbjct: 3   GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK-------PEFDTNL----RIEDPS--- 48
Query: 230 IARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP 289
                                +I + L Q +  + E+  K+     +   + +   GID 
Sbjct: 49  ---------------------MIQKFLAQEENMLREMVDKIKSVGANVVITQK---GIDD 84
Query: 290 QSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEK 349
            +    +R GI A+RR K+ +M++L+ A G + +++++ +  + LG A  V +  +GE+ 
Sbjct: 85  MAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDY 144
Query: 350 FTFVEECKN 358
            TFV   KN
Sbjct: 145 MTFVTGSKN 153

>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 3/178 (1%)
Query: 283 YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
            R  ++  +L   ++  I+ ++  +R  +E LS   G   +  +E      L  A  V E
Sbjct: 293 LRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEE 352
Query: 343 HVLGEEKFTFVEECKNPQ---SVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
                 K   V   +N     +V+++++G N   + +T+ ++ D L  I+  + +  ++ 
Sbjct: 353 IDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIA 412
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ 457
           G GA E+     L     +++G      Q +A AL +IP T+A N+G ++   + +L+
Sbjct: 413 GGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELR 470

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	1e-116
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	5e-18
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	4e-15
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	1e-14
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	8e-13
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	2e-11
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	6e-11
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-110
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	9e-18
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	2e-14
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-13
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	9e-13
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	3e-11
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-10
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	1e-97
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	3e-13
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	5e-12
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	5e-11
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	2e-10
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	1e-09
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	6e-09
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	1e-95
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	4e-13
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	2e-11
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	1e-10
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	7e-10
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	1e-08
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	2e-08
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	1e-77
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	8e-09
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	5e-08
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	1e-07
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	4e-07
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	7e-06
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	8e-06
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	1e-77
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	9e-09
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	1e-08
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	2e-07
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	5e-07
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	7e-06
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	7e-06
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	5e-73
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	8e-08
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	1e-07
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	2e-06
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	5e-06
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	5e-06
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	7e-05
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	9e-73
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	7e-08
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	7e-08
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	2e-06
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	3e-06
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	8e-06
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	5e-05
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	8e-72
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	7e-08
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	1e-07
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	2e-06
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	4e-06
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	7e-05
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	7e-05
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	2e-71
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	8e-08
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	1e-07
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	2e-06
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	3e-06
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	4e-06
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	6e-05
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	6e-71
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	5e-14
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	5e-11
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	9e-11
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	1e-10
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	3e-09
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	6e-08
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	8e-71
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	8e-07
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	2e-06
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	3e-06
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	9e-05
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	1e-04
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	1e-70
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	2e-07
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	2e-06
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	6e-06
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	9e-05
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	2e-04
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	1e-69
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	3e-08
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	1e-06
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	2e-06
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	2e-06
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	2e-05
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	2e-05
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	5e-69
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	2e-07
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	2e-06
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	5e-06
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	7e-05
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	3e-04
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	5e-69
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	2e-07
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	2e-06
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	8e-06
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	7e-05
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	6e-04
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	4e-67
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	4e-07
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	2e-06
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	2e-05
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	3e-05
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	1e-66
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	6e-08
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	2e-06
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	2e-05
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	7e-05
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	6e-04
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	2e-66
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	8e-08
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	2e-06
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	3e-06
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	7e-05
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	1e-04
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	2e-64
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	1e-06
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	2e-06
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	4e-05
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	3e-04
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	2e-61
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	4e-08
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	7e-07
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	4e-04
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	4e-61
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	1e-07
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	7e-07
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	3e-05
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	4e-04
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	9e-04
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	3e-53
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	1e-14
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	8e-13
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	3e-11
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	2e-44
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	3e-12
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	4e-12
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	2e-04

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score =  354 bits (912), Expect = e-116
 Identities = 167/338 (49%), Positives = 219/338 (64%), Gaps = 42/338 (12%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+ +             A + +   
Sbjct: 198 LIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT-EVNSGFFYK----SAEERE--- 249

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRT- 285
                                      +L+K    +I +   K+ +              
Sbjct: 250 ---------------------------KLVKAERKFIEDRVKKIIELKKKVCGDSDKGFV 282

Query: 286 -----GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV 340
                GIDP SLD  A+EGIIALRRAKRRNMERL+LACGG A+NS++ L P  L     V
Sbjct: 283 VINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGV 342

Query: 341 FEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
           +E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN IDDG VVPG
Sbjct: 343 YEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPG 402

Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC 460
           AGA EVA   AL  YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLVK+Q   
Sbjct: 403 AGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH 462

Query: 461 GEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            E+ G  VGVD+N+GE +    AGI+DN  VK+Q+++S
Sbjct: 463 SES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 86.4 bits (215), Expect = 5e-18
 Identities = 36/53 (67%), Positives = 48/53 (90%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
           MVE+MEMKHK+  D+ L++G+VLDHGARHPDM K V++A+ILTCN+S+EYEK+
Sbjct: 182 MVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT 234

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 77.2 bits (191), Expect = 4e-15
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAE 560
           GLHPR+ITEGF  A+ KAL+ LE +K++    RE L+DVARTSLRTKV  ELAD+L E
Sbjct: 105 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE 162

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 76.0 bits (188), Expect = 1e-14
 Identities = 37/51 (72%), Positives = 44/51 (86%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           QIQHPTASLIA+ +TA DD+TGDGTTS VL+IGELLKQAD+YI+E    +H
Sbjct: 60  QIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISE---GLH 107

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 70.3 bits (173), Expect = 8e-13
 Identities = 26/39 (66%), Positives = 37/39 (94%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK++V
Sbjct: 198 LIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV 236

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 66.0 bits (162), Expect = 2e-11
 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 11/67 (16%)

Query: 66  QVREERAHPD------MQHQHGIREE-----GVVLNHGARHPDMPKSVKNAHILTCNISM 114
            ++++    D      M+ +H    +     G+VL+HGARHPDM K V++A+ILTCN+S+
Sbjct: 170 AIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSL 229

Query: 115 EYEKSDV 121
           EYEK++V
Sbjct: 230 EYEKTEV 236

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 64.1 bits (157), Expect = 6e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            NSGFD Q+TLVK+Q    E+ G  VGVD+N+GE +    AGI+DN  VK+Q+++S
Sbjct: 445 QNSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score =  341 bits (878), Expect = e-110
 Identities = 148/339 (43%), Positives = 199/339 (58%), Gaps = 35/339 (10%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
            +KG+VL+HG RHPDMP  VKNA++L  N+S+EYEK+ +       S A     Q     
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT-EVNSGFFYSSAD----QRD--- 260

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
             L A     +D                 LK+    I ++  ++    PD       + G
Sbjct: 261 -KLAASERKFVDAK---------------LKK----IIDLKNEVCGMDPDKGFVIINQKG 300

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           IDP SLD+FA+  I+ALRRAKRRNMERL L  GG A NSVE L P  LG++G V++  +G
Sbjct: 301 IDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG 360

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           EEKFT+V E  +P+S TIL+KG   + LAQTKDAVRDGLRA+ N + D  ++PGAGAF +
Sbjct: 361 EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYI 420

Query: 407 AAWHALQNY---KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
           A    L++    K   KGK++ GI+A+AEALL+IPKT+  NSGFD  D L  +++   +A
Sbjct: 421 ALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480

Query: 464 ----PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                   VGVD+N G+  +PT  GI+D+  V R  I  
Sbjct: 481 QDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITG 519

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 85.7 bits (213), Expect = 9e-18
 Identities = 32/53 (60%), Positives = 44/53 (83%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
           MVE+M+M+H +P D+  +KG+VLDHG RHPDMP  VKNA++L  N+S+EYEK+
Sbjct: 193 MVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT 245

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 75.3 bits (186), Expect = 2e-14
 Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           QIQ PTA LIARA+ A D++TGDGTT+ V ++GELL+QA  +I E    +H
Sbjct: 67  QIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQE---GVH 114

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 3/61 (4%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKVERELADLLA 559
           G+HPR+IT+GF  AR ++++ L+  KI+       RE LL VAR+SL TKV+ +L ++L 
Sbjct: 112 GVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLT 171

Query: 560 E 560
            
Sbjct: 172 P 172

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 69.9 bits (172), Expect = 9e-13
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
            +KG+VL+HG RHPDMP  VKNA++L  N+S+EYEK++V
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 23/37 (62%), Positives = 32/37 (86%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           +G+VL+HG RHPDMP  VKNA++L  N+S+EYEK++V
Sbjct: 211 KGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 573 VNSGFDAQDTLVKLQEACGEA----PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            NSGFD  D L  +++   +A        VGVD+N G+  +PT  GI+D+  V R  I  
Sbjct: 460 KNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITG 519

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  307 bits (789), Expect = 1e-97
 Identities = 87/336 (25%), Positives = 155/336 (46%), Gaps = 45/336 (13%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           +++GV++N    HP M + +KN  I+  + S+EY+K  +     EI+             
Sbjct: 202 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG-ESQTDIEITRE----------- 249

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD---CSTSDRY 283
                      +D T             +L+  + YI ++   + +  PD          
Sbjct: 250 -----------EDFT------------RILQMEEEYIQQLCEDIIQLKPDVVIT------ 280

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE- 342
             GI   +     R  I A+RR ++ +  R++ ACG   ++  E L    +G    + E 
Sbjct: 281 EKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEI 340

Query: 343 HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
             +G+E FTF+ ECK+P++ TILL+G +K  L++ +  ++D ++  +N + D  +VPG G
Sbjct: 341 KKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 400

Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
           A E+A  HAL      + G  +   +A A+AL +IP+T+  N G      L  L+    +
Sbjct: 401 ASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ 460

Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                 GV+  +G +++    GI++ L VK Q   +
Sbjct: 461 ENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKT 496

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
              + ++      DSC+++GV+++    HP M + +KN  I+  + S+EY+K
Sbjct: 186 YARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK 237

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 67.5 bits (166), Expect = 5e-12
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           Q+QHP A  +   S   D+  GDGTTS +++ GE+L  A+ ++ +   +MH
Sbjct: 59  QVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQ---QMH 106

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 64.4 bits (158), Expect = 5e-11
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP V+   + +A    +  L+ + I    S R+ +L++  +S+ TKV    + L   
Sbjct: 104 QMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACN 162

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 62.1 bits (152), Expect = 2e-10
 Identities = 13/39 (33%), Positives = 25/39 (64%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           +++GV++N    HP M + +KN  I+  + S+EY+K + 
Sbjct: 202 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 60.2 bits (147), Expect = 1e-09
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N G      L  L+    +      GV+  +G +++    GI++ L VK Q   +
Sbjct: 441 QNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKT 496

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            GV++N    HP M + +KN  I+  + S+EY+K + 
Sbjct: 204 RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score =  302 bits (777), Expect = 1e-95
 Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 39/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV+GVV++    HP MPK V+NA I   N ++E +K+ +   +  I              
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT-ETDAKINI-------------- 259

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                   T+ D +               L+Q +  + ++   + +   +       + G
Sbjct: 260 --------TSPDQLM------------SFLEQEEKMLKDMVDHIAQTGANVVFV---QKG 296

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    A+ GI+A+RR K+ +ME+L+ A G   + +V+ L P  LGYA  V E  L 
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
            E   FVE CKNP++VTIL++G  +H + + + A+ D ++ +K+ ++DGAV+P  GA E+
Sbjct: 357 GENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEI 416

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L  Y   V GK  L I+ +A+AL IIPKT+A N+G D  + LVK+        G+
Sbjct: 417 ELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNR-GL 475

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            +G+DV  G+  +    GI + L VK+Q I S
Sbjct: 476 GIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
            ++  +   +   +S LV+GVV+D    HP MPK V+NA I   N ++E +K
Sbjct: 199 NIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKK 250

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            +QHP A ++   +   D   GDGTT+ V++ GELL++A+  + +    +H
Sbjct: 73  DLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQ---NIH 120

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP +IT+G+  A  KA E+L+ + I   P   E LL +A TS+  K      +LLA+
Sbjct: 118 NIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAK 176

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           LV+GVV++    HP MPK V+NA I   N ++E +K++ 
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G D  + LVK+        G+ +G+DV  G+  +    GI + L VK+Q I S
Sbjct: 453 ENAGLDTVEMLVKVISEHKNR-GLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            GVV++    HP MPK V+NA I   N ++E +K++ 
Sbjct: 217 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score =  255 bits (655), Expect = 1e-77
 Identities = 99/332 (29%), Positives = 170/332 (51%), Gaps = 39/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
            + G+V++    H  MP  VKNA I   + ++E +K+ +   + +I              
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-EIEAKVQI-------------- 256

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                   +    +             + L Q      ++  K+ K   +       + G
Sbjct: 257 --------SDPSKIQ------------DFLNQETNTFKQMVEKIKKSGANVVLC---QKG 293

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    A+EGI A+RR K+ +ME+L+ A G   +  ++ L P+ LG A +V E  +G
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG 353

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           +++ TFV  CKNP++V+IL++G   H +++ + A+ D +R +  T +DG  + G GA E 
Sbjct: 354 DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEA 413

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L  Y N+V G+ +L I+A+A+AL IIP+T+A N+G D  +TL+KL+ A  E   +
Sbjct: 414 ELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLK-ADDEKGRI 472

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
           +VGVD+++  V +  + G+ D L VK   + S
Sbjct: 473 SVGVDLDNNGVGDMKAKGVVDPLRVKTHALES 504

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 57.6 bits (140), Expect = 8e-09
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    D+  + G+V+D    H  MP  VKNA I   + ++E +K
Sbjct: 201 KKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKK 247

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAE 560
           G+HP VI+ G+  A  +A ++++ +          L  +A T+L  K      D LA+
Sbjct: 117 GVHPTVISNGYRLAVNEARKIIDEIAE-KSTDDATLRKIALTALSGKNTGLSNDFLAD 173

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            ++HPTA +I   S A D   GDGTT+ V++ GELLKQA+  + +    +H
Sbjct: 72  DVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQ---GVH 119

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
            + G+V++    H  MP  VKNA I   + ++E +K+++
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            G+V++    H  MP  VKNA I   + ++E +K+++
Sbjct: 214 SGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G D  +TL+KL+ A  E   ++VGVD+++  V +  + G+ D L VK   + S
Sbjct: 450 ENAGIDPINTLIKLK-ADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALES 504

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score =  254 bits (651), Expect = 1e-77
 Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 39/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+ G+V++    HP+MP+ V+NA IL  +  +E+ K+ +   + +I              
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKT-EVDSEIKI-------------- 210

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                   T+   M               L Q +  + E+  K+     +       + G
Sbjct: 211 --------TSPGQMQ------------LFLDQEEKMMREMAEKVIASGANVVFC---QKG 247

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +     + GI A+RR K+ +++RLS   G T +  ++ +    +G AG V E  + 
Sbjct: 248 IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVR 307

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
             K T+V  C+N ++VT+LL G  +H +     A+ D L  +   I+DG VV G G+ EV
Sbjct: 308 GGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEV 367

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L  Y +T+KG+ +L +  +AEAL +IP  +A N+G D  D +V+L+    +    
Sbjct: 368 ELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKG-NK 426

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G++V +GEV++     + + L +K Q IN+
Sbjct: 427 NAGLNVYTGEVVDMWENDVIEPLRIKTQAINA 458

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 57.2 bits (139), Expect = 9e-09
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    DS L+ G+V+D    HP+MP+ V+NA IL  +  +E+ K
Sbjct: 155 KRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRK 201

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
           G+H  +I+EG+  A  K  E+LE++ I   P     L+ +A T++  K      + L+ 
Sbjct: 68  GVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSA 126

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            IQHP A +I   S   D   GDGTT+  ++ GELL +A+  I +    +H
Sbjct: 23  DIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMK---GVH 70

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 51.8 bits (125), Expect = 5e-07
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L+ G+V++    HP+MP+ V+NA IL  +  +E+ K++V
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           +G+V++    HP+MP+ V+NA IL  +  +E+ K++V
Sbjct: 168 DGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G D  D +V+L+    +      G++V +GEV++     + + L +K Q IN+
Sbjct: 404 ENAGLDPIDIMVELRSQHEKG-NKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINA 458

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score =  243 bits (623), Expect = 5e-73
 Identities = 94/332 (28%), Positives = 164/332 (49%), Gaps = 38/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+KGV+++       MPK V +A I   N ++E +++ +   +  I              
Sbjct: 208 LIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKET-ETDAEIRI-------------- 252

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                   T    +             E ++Q +  + ++  ++     +       + G
Sbjct: 253 --------TDPAKLM------------EFIEQEEKMLKDMVAEIKASGANVLFC---QKG 289

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    A+EGI+A RR K+ +ME+L+ A G   + ++  L    LG AG V E  + 
Sbjct: 290 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS 349

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
            +   FVEECK+P++VT+L++G  +H + +   AV D +  +  TI+DG +V G G+ EV
Sbjct: 350 GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEV 409

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L+ Y   + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A       
Sbjct: 410 ELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNK 469

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G++V +G V +    G+ + L VK Q I S
Sbjct: 470 CAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP ++ +G+  A  KA E+L+++        +EIL  +A TS+  K   +  + LAE
Sbjct: 114 NVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAE 172

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    D+ L+KGV++D       MPK V +A I   N ++E ++
Sbjct: 197 KKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKE 243

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            ++HP A ++   +   +   GDGTT+ V+V GELL++A+  + +    +H
Sbjct: 69  SVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQ---NVH 116

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L+KGV+++       MPK V +A I   N ++E ++++ 
Sbjct: 208 LIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G DA + LVK++ A         G++V +G V +    G+ + L VK Q I S
Sbjct: 446 ENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           +GV+++       MPK V +A I   N ++E ++++ 
Sbjct: 210 KGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score =  243 bits (622), Expect = 9e-73
 Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 38/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV G+V++    HP MPK ++NA I   + S+E EK  +   +  I              
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKP-ELDAEIRI-------------- 266

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                        M             + L + +  I E   K+     +       + G
Sbjct: 267 --------NDPTQMQ------------KFLDEEENLIKEKVDKILATGANVIIC---QKG 303

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    A++G++A+RRAK+ ++E+L+ A GG  +++++ +    LGYA  + E  +G
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG 363

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           E+K  FVE  KNP+S++IL++G  +  + +T+ A+RD L  + + I DG  + G GA E+
Sbjct: 364 EDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEI 423

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L+ Y   V GK +L ++AYA AL  +   +  N+GFD  D L+KL+         
Sbjct: 424 EIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNK 483

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G+D+ +G+ ++    G+ +   VK   I +
Sbjct: 484 WYGIDLYAGQPVDMWQKGVIEPALVKMNAIKA 515

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP +I  G+ +A   AL+ ++ L  T   +  ++L  +A TSL +K      + +A+
Sbjct: 125 DVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIAD 183

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    D+ LV G+V+D    HP MPK ++NA I   + S+E EK
Sbjct: 211 KKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEK 257

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            +QHP A L+ + +   D+ T DGT + V+  GEL+K+A+  + +    +H
Sbjct: 80  DLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYK---DVH 127

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           LV G+V++    HP MPK ++NA I   + S+E EK ++
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+GFD  D L+KL+           G+D+ +G+ ++    G+ +   VK   I +
Sbjct: 460 ENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKA 515

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            G+V++    HP MPK ++NA I   + S+E EK ++
Sbjct: 224 YGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score =  240 bits (615), Expect = 8e-72
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 39/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+ G++++    HP MP  VK+A I   +  +E +K  +      I              
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKP-EFDTNLRI-------------- 257

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                        +             + L Q +  + E+  K+     +   +   + G
Sbjct: 258 --------EDPSMIQ------------KFLAQEENMLREMVDKIKSVGANVVIT---QKG 294

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           ID  +    +R GI A+RR K+ +M++L+ A G + +++++ +  + LG A  V +  +G
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG 354

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           E+  TFV  CKNP++V+IL++G  +H + + + ++ D L  + + ++DGA   G GA   
Sbjct: 355 EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAA 414

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
                L++Y   + G+ +L I+ +A+A+  IP+ +A N+G D  D L+KL+ A       
Sbjct: 415 EIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLR-AEHAKGNK 473

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G++V +GE+ +    G+ + + V +Q I S
Sbjct: 474 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 505

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    D+ L+ G+++D    HP MP  VK+A I   +  +E +K
Sbjct: 202 KKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK 248

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP VI+EG+  A  +A  V++ +        + +LL +A+TSL +K      D LAE
Sbjct: 116 NVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAE 174

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            ++HP A ++   S   D   GDGTT+ V++ G LL+QA   I +    +H
Sbjct: 71  DVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQ---NVH 118

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L+ G++++    HP MP  VK+A I   +  +E +K + 
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 251

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            G++++    HP MP  VK+A I   +  +E +K + 
Sbjct: 215 NGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 251

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G D  D L+KL+ A         G++V +GE+ +    G+ + + V +Q I S
Sbjct: 451 ENAGLDPIDILLKLR-AEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 505

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  238 bits (610), Expect = 2e-71
 Identities = 80/334 (23%), Positives = 148/334 (44%), Gaps = 40/334 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+KGV+++    HP MPK V++A I       E  K  +  H+ ++              
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP-KTKHKLDV-------------- 246

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                   T+++D               L K       E+  ++ +   + +     + G
Sbjct: 247 --------TSVEDFK------------ALQKYEKEKFEEMIRQIKETGANLAVC---QWG 283

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
            D ++  L  +  + A+R      +E +++A GG  +     L    LG+AG V E   G
Sbjct: 284 FDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFG 343

Query: 347 --EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
             ++K   +E+CKN ++VTI ++G NK  + + K ++ D L  I+N I D  VV G GA 
Sbjct: 344 TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 403

Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
           E++   A+    +      +  ++A+A+AL +IP  +A NSG +   T+ +++    +  
Sbjct: 404 EISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEV 463

Query: 465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             A+G+D       +     + + L  K+Q I+ 
Sbjct: 464 NPALGIDCLHKGTNDMKHQHVIETLIGKKQQISL 497

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
              G    D+ L+KGV++D    HP MPK V++A I       E  K
Sbjct: 191 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPK 237

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKVERELADLLA 559
           G+HP  I +G+ QA   A+E L+ +  +        E L+  A+T+L +KV       +A
Sbjct: 105 GIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMA 164

Query: 560 E 560
           E
Sbjct: 165 E 165

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            + H  A L+   S + DD  GDGTT  V++ G LL++A+  +      +H
Sbjct: 60  DVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDR---GIH 107

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            NSG +   T+ +++    +    A+G+D       +     + + L  K+Q I+ 
Sbjct: 442 ENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISL 497

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L+KGV+++    HP MPK V++A I       E  K   
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 44.8 bits (107), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           +GV+++    HP MPK V++A I       E  K   
Sbjct: 204 KGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score =  239 bits (611), Expect = 6e-71
 Identities = 73/392 (18%), Positives = 144/392 (36%), Gaps = 102/392 (26%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           ++KGV+LN    HP M + ++N  ++  +  +EY K  +     EI              
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEY-KKGESQTNIEI-------------- 263

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD---CSTSDRY 283
                      +D               +L+  +  +  +  ++    P           
Sbjct: 264 --------EKEEDWN------------RILQIEEEQVQLMCEQILAVRPTLVIT------ 297

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVFE 342
             G+   +     + G   LRR K+ +  R++   G T +N VE L+ + +G   G    
Sbjct: 298 EKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKV 357

Query: 343 HVLGEEKFTFVEECKNPQSVT--------------------ILLKGPNKHTLAQTKDA-- 380
            ++G+E F+F++ CK P S +                    I +   N+     +  A  
Sbjct: 358 EMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALG 417

Query: 381 ----------------------------------VRDGLRAIKNTIDDGAVVPGAGAFEV 406
                                             ++D +   +N +   ++ PG GA E+
Sbjct: 418 SGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEM 477

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
           A    L      ++G  +   QA A+A+  IP+T+  N+G D    L +L+    +    
Sbjct: 478 AVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NF 536

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G+D + G++++  S GI++   +K+Q + +
Sbjct: 537 TTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKT 568

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 74.4 bits (183), Expect = 5e-14
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
            V + ++      DS ++KGV+L+    HP M + ++N  ++  +  +EY+K
Sbjct: 203 YVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKK 254

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP +I +   +A   ALEV++ +           +  + + S+ TK     ++ + E
Sbjct: 115 NIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCE 173

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 64.0 bits (156), Expect = 9e-11
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
            + HP A  +   S   D+  GDGTT+ +++ GE+L Q 
Sbjct: 69  DVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQC 107

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           ++KGV+LN    HP M + ++N  ++  +  +EY+K + 
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           +GV+LN    HP M + ++N  ++  +  +EY+K + 
Sbjct: 221 KGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
           N+G D    L +L+    +      G+D + G++++  S GI++   +K+Q + +
Sbjct: 515 NAGGDPIRLLSQLRAKHAQG-NFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKT 568

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score =  237 bits (607), Expect = 8e-71
 Identities = 77/332 (23%), Positives = 142/332 (42%), Gaps = 39/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L +G +L     +   PK ++NA IL  N +++ +K    G + ++              
Sbjct: 208 LDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKIFGTKFKV-------------- 252

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                    +   +             +L K     +     K+ KF  +   +   R  
Sbjct: 253 --------DSTAKLA------------QLEKAEREKMKNKIAKISKFGINTFIN---RQL 289

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           I      LF   GI ++  A    +ERL+L  GG  +++ +      LG    + E +LG
Sbjct: 290 IYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLG 349

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           E+ F     CK  ++ TI+L+G    TL + + ++ D L  +  T  +   V G G  E+
Sbjct: 350 EQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEM 409

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
               A+      + GK  L ++A+A AL  +P  +A N+GFD+ + + KL+ +       
Sbjct: 410 VMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLR-SSIYNGIS 468

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G+D+N+G + +    GI ++  +KR +++S
Sbjct: 469 TSGLDLNNGTIADMRQLGIVESYKLKRAVVSS 500

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 51.0 bits (123), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 504 LHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLLA 559
           +HP+ I EG+  A   AL+ L    +         RE L+ +A+T+L +K+  +  D  A
Sbjct: 115 IHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFA 174

Query: 560 E 560
           E
Sbjct: 175 E 175

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
            + +P A ++   S   DD  GDGTTS  ++  ELL++A+  I +
Sbjct: 68  PLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQ 112

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 49.0 bits (118), Expect = 3e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    DS L +G +L     +   PK ++NA IL  N +++ +K
Sbjct: 197 KILGGKLSDSFLDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDK 242

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 44.4 bits (106), Expect = 9e-05
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+GFD+ + + KL+ +         G+D+N+G + +    GI ++  +KR +++S
Sbjct: 446 DNAGFDSSELVSKLR-SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSS 500

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L +G +L     +   PK ++NA IL  N +++ +K  +
Sbjct: 208 LDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKI 245

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score =  236 bits (605), Expect = 1e-70
 Identities = 77/332 (23%), Positives = 143/332 (43%), Gaps = 39/332 (11%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L +G +L+      + PK ++NA IL  N  M+ +K    G +  +              
Sbjct: 201 LDEGFLLDKKI-GVNQPKRIENAKILIANTGMDTDKIKIFGSRVRV-------------- 245

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                    +   +             E+       + E   ++ K   +C  +   R  
Sbjct: 246 --------DSTAKVA------------EIEHAEKEKMKEKVERILKHGINCFIN---RQL 282

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
           I      LF   G++A+  A    +ERL+L  GG   ++ +  E   LG    + E ++G
Sbjct: 283 IYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG 342

Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
           E+K          ++ TI+L+G  +  L + + ++ D L  +  T+ D   V G G  E+
Sbjct: 343 EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEM 402

Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
              HA+    +   GK  + +++YA+AL ++P  IA N+G+D+ D + +L+ A       
Sbjct: 403 LMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLR-AAHSEGKT 461

Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
             G+D+  G + + +  GI ++  VKRQ++ S
Sbjct: 462 TAGLDMKEGTIGDMSVLGITESFQVKRQVLLS 493

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLL 558
            +HP+ I  G+ +A   A + L +  +         R+ L+++A T+L +K+     D  
Sbjct: 107 KIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHF 166

Query: 559 AE 560
            +
Sbjct: 167 TK 168

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            + +P A ++   S   DD  GDGTTS  ++  ELL++A+  IA+   K+H
Sbjct: 62  GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAK---KIH 109

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    DS L +G +LD      + PK ++NA IL  N  M+ +K
Sbjct: 190 KKLGGSLADSYLDEGFLLDKKI-GVNQPKRIENAKILIANTGMDTDK 235

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 44.4 bits (106), Expect = 9e-05
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G+D+ D + +L+ A         G+D+  G + + +  GI ++  VKRQ++ S
Sbjct: 439 DNAGYDSADLVAQLR-AAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLS 493

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L +G +L+      + PK ++NA IL  N  M+ +K  +
Sbjct: 201 LDEGFLLDKKI-GVNQPKRIENAKILIANTGMDTDKIKI 238

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score =  234 bits (599), Expect = 1e-69
 Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 51/345 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           L+ G  LN       MPK + NA I   + S++  K  + G Q  I              
Sbjct: 204 LINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM-KLGVQVVI-------------- 248

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                   T  + +             ++ ++      E   K+     +   +     G
Sbjct: 249 --------TDPEKLD------------QIRQRESDITKERIQKILATGANVILT---TGG 285

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAH------LGYAGSV 340
           ID   L  F   G +A+RR  +R+++R++ A G T ++++  LE         LG A  V
Sbjct: 286 IDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEV 345

Query: 341 FEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
            +  + +++   ++  K   S +++L+G N     + + ++ D L  +K  ++  +VVPG
Sbjct: 346 VQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPG 405

Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL---- 456
            GA E A    L+NY  ++  + +L I  +A +LL+IP T+AVN+  D+ D + KL    
Sbjct: 406 GGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFH 465

Query: 457 ---QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
              Q          +G+D+ +G+  +   AG+++   VK + +  
Sbjct: 466 NEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKF 510

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    +S L+ G  L+       MPK + NA I   + S++  K
Sbjct: 193 KAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTK 239

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 503 GLHPRVITEGFTQARLKALEVL-ESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP  +  G+  A  +A+  + E+L I T    R+ L++ A+TS+ +KV     D  A 
Sbjct: 105 KIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFAN 164

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           +++HP A ++   +   D   GDGTTS V++  ELLK AD  + +   K+H
Sbjct: 60  EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQ---KIH 107

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           L+ G  LN       MPK + NA I   + S++  K  +
Sbjct: 204 LINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            G  LN       MPK + NA I   + S++  K  +
Sbjct: 206 NGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 573 VNSGFDAQDTLVKL-------QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI 625
           VN+  D+ D + KL       Q          +G+D+ +G+  +   AG+++   VK + 
Sbjct: 448 VNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKS 507

Query: 626 INS 628
           +  
Sbjct: 508 LKF 510

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score =  233 bits (596), Expect = 5e-69
 Identities = 69/335 (20%), Positives = 136/335 (40%), Gaps = 42/335 (12%)

Query: 167 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQ 223
            + GV       +      PK   N  IL+ N+ +E +   +   +  +           
Sbjct: 214 FINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAE-KDNAEVRV----------- 261

Query: 224 HPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY 283
                        ++D               ++      I E   ++ +   +   S   
Sbjct: 262 -----------EHVEDYQ------------AIVDAEWQLIFEKLRQVEETGANIVLS--- 295

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           +  I   +   FA   I    R    +M R+  A GG+  ++   ++P HLG      E 
Sbjct: 296 KLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEM 355

Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +G E++   + C   ++ T+LL+G  +  +A+ + ++ D +  +K  + +  +V G GA
Sbjct: 356 QIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGA 415

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     L++Y  T+ GK ++ I A+A+AL +IP+ +  N+GFDA + L KL+      
Sbjct: 416 TEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLR-LAHSK 474

Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                GV   +  + +  +  +++   VK   +NS
Sbjct: 475 GEKWYGVVFETENIGDNFAKFVWEPALVKINALNS 509

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLL 558
           G+   +I +G+ +A   A+E +  L +         RE+L   ART++ +K+    AD  
Sbjct: 119 GISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFF 178

Query: 559 AE 560
            +
Sbjct: 179 VK 180

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            + HP A  +   S A D   GDGTTS  ++ GEL+K+A  ++ E    + 
Sbjct: 74  DVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEE---GIS 121

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 10  KTPG----DSCLVKGVVLDHGARHP---DMPKSVKNAHILTCNISMEYEK 52
           K PG    +S  + GV       +      PK   N  IL+ N+ +E + 
Sbjct: 203 KIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKA 252

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+GFDA + L KL+           GV   +  + +  +  +++   VK   +NS
Sbjct: 455 ENAGFDAIEILNKLR-LAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNS 509

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 125 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSDV 163
            + GV       +      PK   N  IL+ N+ +E +    
Sbjct: 214 FINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKD 255

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  232 bits (593), Expect = 5e-69
 Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 42/335 (12%)

Query: 167 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQ 223
           LV GV       +      PK   N  I   N+ +E +   +   +  +           
Sbjct: 201 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE-KDNAEIRV----------- 248

Query: 224 HPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY 283
                        ++D               ++      + +   K+H        S   
Sbjct: 249 -----------HTVEDYQ------------AIVDAEWNILYDKLEKIHHSGAKVVLS--- 282

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           +  I   +   FA   +    R    +++R  +ACGG+   SV  L    LG      E 
Sbjct: 283 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEET 342

Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
            +G E++ F   C   ++ TI+L+G  +  + +T+ ++ D +  ++  I + +VV G GA
Sbjct: 343 QIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGA 402

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     L++Y  T+ GK +L I AYA+AL IIP+ +  N+GFDA + L KL+ A    
Sbjct: 403 IEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLR-ARHAQ 461

Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            G+  GVD+N+ ++ +   A +++   V+   + +
Sbjct: 462 GGMWYGVDINTEDIADNFEAFVWEPAMVRINALTA 496

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTKVERELADL 557
           GLHP++I   F  A   A+  ++ + +T         R++L   A T+L +K+  +    
Sbjct: 106 GLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAF 165

Query: 558 LAE 560
            A+
Sbjct: 166 FAK 168

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            + HP A  +   + + D   GDGTTS  L+  E LKQ   Y+ E    +H
Sbjct: 61  DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEE---GLH 108

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 10  KTPG----DSCLVKGVVLDHGARHP---DMPKSVKNAHILTCNISMEYEK 52
           K  G    +S LV GV       +      PK   N  I   N+ +E + 
Sbjct: 190 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKA 239

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+GFDA + L KL+ A     G+  GVD+N+ ++ +   A +++   V+   + +
Sbjct: 442 DNAGFDATNILNKLR-ARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTA 496

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 41.7 bits (99), Expect = 6e-04
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 125 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSDV 163
           LV GV       +      PK   N  I   N+ +E +    
Sbjct: 201 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKD 242

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score =  228 bits (583), Expect = 4e-67
 Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 46/340 (13%)

Query: 167 LVKGVVLNHGARHPDMPKSV------KNAHILTCNISMEYEKSSQGGHQPEISLAKGIAN 220
           L+ GV+L+    HP MPK V          +       E  K  +  H+ +I        
Sbjct: 239 LINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP-KTKHKLDI-------- 289

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTS 280
                         +++++              +L         E+   + K   D    
Sbjct: 290 --------------SSVEEYQ------------KLQTYEQDKFKEMIDDVKKAGADVVIC 323

Query: 281 DRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV 340
              + G D ++  L  +  + A+R    + +E ++++  G  +   + L    LG    +
Sbjct: 324 ---QWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRI 380

Query: 341 FEHVLG--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVV 398
           +E   G  +++   +E+ K  ++VT  ++G NK  + + + A+ D L  ++N + D  VV
Sbjct: 381 YEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVV 440

Query: 399 PGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE 458
            G GA EV    A+    +  +G  +   + +A+AL  IP T+A NSG D   TL  L+ 
Sbjct: 441 YGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKS 500

Query: 459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
              +     +GVD       +     + D    K+Q I  
Sbjct: 501 KQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILL 540

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTKVERELADL 557
           G+HP  I  GF +A   A+  LE        S     R+ LL  A+TSL +K+  +  D 
Sbjct: 140 GIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDR 199

Query: 558 LAE 560
            AE
Sbjct: 200 FAE 202

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           ++ +  A L+ + S + DD  GDGTT  V++   LL QA   I +    +H
Sbjct: 95  ELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQK---GIH 142

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 14/56 (25%), Positives = 20/56 (35%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            NSG D   TL  L+    +     +GVD       +     + D    K+Q I  
Sbjct: 485 ENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILL 540

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSV------KNAHILTCNISMEYEK 52
              G    DS L+ GV+LD    HP MPK V          +       E  K
Sbjct: 228 GRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPK 280

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score =  225 bits (577), Expect = 1e-66
 Identities = 66/336 (19%), Positives = 131/336 (38%), Gaps = 41/336 (12%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           LV+G+VL     +  + + V+ A I      +   K+    +Q  +              
Sbjct: 202 LVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKT-DMDNQIVV-------------- 245

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDC--STSDRYR 284
                   +    M              +L++   YI  +  ++ K   +         R
Sbjct: 246 --------SDYVQMD------------RVLREERAYILNLVKQIKKTGCNVLLIQKSILR 285

Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE-H 343
             +   +L    +  I+ ++  +R ++E +    G   +  V+      LG A    E  
Sbjct: 286 DALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVS 345

Query: 344 VLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
           + G  K   +  C +P ++VTI+++G NK  + + + ++ D L  I+  +   A++ G G
Sbjct: 346 LNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 405

Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
           A E+     L  Y  T+ G     I+A+A+A+ +IP T+A N+G +   T+ +L+     
Sbjct: 406 APEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELR-NRHA 464

Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                 G++V  G + N     +   L V    +  
Sbjct: 465 QGEKTTGINVRKGGISNILEELVVQPLLVSVSALTL 500

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
           G+HP +I+E F +A  K +E+L  +      S RE LL+ A TSL +KV  + + LL+ 
Sbjct: 106 GIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSP 164

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
           Q+ HP A ++   S A D   GDGTTS V++ G LL      + +    +H
Sbjct: 61  QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQK---GIH 108

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    D  LV+G+VL     +  + + V+ A I      +   K
Sbjct: 191 KKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPK 236

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G +   T+ +L+           G++V  G + N     +   L V    +  
Sbjct: 446 ENAGLNPISTVTELR-NRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTL 500

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 41.7 bits (99), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           LV+G+VL     +  + + V+ A I      +   K+D+
Sbjct: 202 LVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDM 239

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score =  225 bits (576), Expect = 2e-66
 Identities = 62/338 (18%), Positives = 121/338 (35%), Gaps = 42/338 (12%)

Query: 167 LVKGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHP 225
           ++ GVVL   A      P   + A I      +   K     +   +             
Sbjct: 209 MIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKP-DTENNIIV------------- 254

Query: 226 TASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDC--STSDRY 283
                         M             ++LK+   Y+  +  K+ K   +         
Sbjct: 255 ---------NDYRQMD------------KILKEERAYLLNICKKIKKAKCNVLLIQKSIL 293

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
           R  ++  +L   ++  I+ ++  +R  +E LS   G   +  +E      L  A  V E 
Sbjct: 294 RDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEI 353

Query: 344 VLGEEKFTFVEECKNP---QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
                K   V   +N     +V+++++G N   + +T+ ++ D L  I+  + +  ++ G
Sbjct: 354 DSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAG 413

Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC 460
            GA E+     L     +++G      Q +A AL +IP T+A N+G ++   + +L+ + 
Sbjct: 414 GGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELR-SK 472

Query: 461 GEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            E   +  G+ V      N     I   + V    I  
Sbjct: 473 HENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITL 510

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
           G+HP +I + F  A  +++++L  +      S RE L+  A TSL +K+  + +  LA 
Sbjct: 114 GIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAP 172

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            I HP A ++   S A D   GDGTTS V++ G LL  A+  + +    +H
Sbjct: 69  AILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNK---GIH 116

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 10  KTPG----DSCLVKGVVLDHGARH-PDMPKSVKNAHILTCNISMEYEK 52
           K  G    D+ ++ GVVL   A      P   + A I      +   K
Sbjct: 198 KKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPK 245

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
            N+G ++   + +L+ +  E   +  G+ V      N     I   + V    I  
Sbjct: 456 ENAGLNSIKVVTELR-SKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITL 510

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 125 LVKGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSDV 163
           ++ GVVL   A      P   + A I      +   K D 
Sbjct: 209 MIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDT 248

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score =  220 bits (564), Expect = 2e-64
 Identities = 82/351 (23%), Positives = 146/351 (41%), Gaps = 57/351 (16%)

Query: 167 LVKGVVLNHGARHPDMPKSVK--NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQH 224
           LV G  LN       MPK +   N  I   +++++  +    G Q  I            
Sbjct: 218 LVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARM-AMGVQINI------------ 264

Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
                        + +             ++ K+    + E   K+         +    
Sbjct: 265 ----------DDPEQLE------------QIRKREAGIVLERVKKIIDAGAQVVLT---T 299

Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP------AHLGYAG 338
            GID   L  F    I+ +RR K+ ++ R++ A G T ++S+  LE       ++LG   
Sbjct: 300 KGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCD 359

Query: 339 SVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVV 398
            V +    +++   ++      S +I+L+G N ++L + + ++ D L  +K T++ G VV
Sbjct: 360 EVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVV 419

Query: 399 PGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL-- 456
           PG G  E A    L N+  TV  + +L I  +A ALLIIPKT+AVN+  D+ + + KL  
Sbjct: 420 PGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRS 479

Query: 457 ---------QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
                     E          G+D+  G++++   AG+ +    K + + S
Sbjct: 480 YHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKS 530

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 503 GLHPRVITEGFTQARLKALEVL-ESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
            +HP  I  GF  A  +A+  + E L  +     +E L+++A+TS+ +K+    +D  + 
Sbjct: 119 KIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSN 178

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
            +QHP   ++   +   D   GDGTTS V++  ELLK+A+  +     K+H
Sbjct: 74  DVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKN---KIH 121

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVK--NAHILTCNISMEYEK 52
           K  G    +S LV G  L+       MPK +   N  I   +++++  +
Sbjct: 207 KAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKAR 255

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 573 VNSGFDAQDTLVKL-----------QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTV 621
           VN+  D+ + + KL            E          G+D+  G++++   AG+ +    
Sbjct: 464 VNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTIS 523

Query: 622 KRQIINS 628
           K + + S
Sbjct: 524 KVKSLKS 530

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score =  211 bits (540), Expect = 2e-61
 Identities = 66/337 (19%), Positives = 121/337 (35%), Gaps = 48/337 (14%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHI--LTCNISMEYEKSSQGGHQPEISLAKGIANQIQH 224
           ++ G+V            SVK+A I   +C       ++        I  A         
Sbjct: 201 VLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITET---KGTVLIKSA--------- 246

Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
                        +++                K  +  +      +     +   +    
Sbjct: 247 -------------EELM------------NFSKGEENLMDAQVKAIADTGANVVVT---G 278

Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHV 344
             +   +L    +  I+ +R   + ++ RL    G TA+  +       +G+  SV+   
Sbjct: 279 GRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSE 338

Query: 345 LGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
           +G+ +    +  K      TI+L+G   + +   + AV DG+   K    D  +VPG GA
Sbjct: 339 VGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGA 398

Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
            E+     + +Y  T  G  +  I+ +AEA   IP+ +A NSG  A + + KL  A  + 
Sbjct: 399 TEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLY-AVHQE 457

Query: 464 PGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIINS 498
               VG+D+ +    V +   AG+ D    K   I  
Sbjct: 458 GNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKL 494

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 55.2 bits (134), Expect = 4e-08
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKV---ERELAD 556
           GL    + EG+  A  KA E+L  L   +  +    + +  +  TS+ +K    E  LA 
Sbjct: 106 GLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAK 165

Query: 557 LLAE 560
           L+A+
Sbjct: 166 LIAQ 169

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
           ++QHP A +I  AS   +   GDGT   ++  G LL+ A+  +
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELL 103

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 6/47 (12%)

Query: 10  KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G     S ++ G+V            SVK+A I   +   +   
Sbjct: 190 KILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMI 234

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score =  212 bits (541), Expect = 4e-61
 Identities = 72/349 (20%), Positives = 134/349 (38%), Gaps = 57/349 (16%)

Query: 167 LVKGVVLNHG-ARHPDMPKSVKNAHI--LTCNISMEYEKSSQGGHQPEISLAKGIANQIQ 223
           ++KG+V N     H       K   +   TC + +   ++        +  A        
Sbjct: 222 VIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTET---KGTVLLHNA-------- 270

Query: 224 HPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY 283
                          +M             +  K  +  I  +  ++     +C  +   
Sbjct: 271 --------------QEML------------DFSKGEEKQIDAMMKEIADMGVECIVA--- 301

Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
             G+   +L    R GI+ L+   +  + RL   CG T +  +    P  LG   +V   
Sbjct: 302 GAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTM 361

Query: 344 VLGEEKFTFV--EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD--GAVVP 399
            +G ++ T    E+ +  ++ TI+L+G  ++ L   + A+ DG+ A+K  +    G ++P
Sbjct: 362 EIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLP 421

Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL--- 456
           GAGA E+     +  Y     G  +L I+ +A A  ++P+T+A  +G D  + L  L   
Sbjct: 422 GAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAA 481

Query: 457 ----QEACGEAPGVAVGVDVN---SGEVLNPTSAGIYDNLTVKRQIINS 498
               +    +   +  GVD++      V +     IYD L  K+  IN 
Sbjct: 482 HNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINV 530

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKV---ERELAD 556
           GL    I +G+  AR   L+ L+ + +        +  LL + +  + +K    E  L++
Sbjct: 121 GLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSE 180

Query: 557 LLAE 560
           L++E
Sbjct: 181 LVSE 184

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
            I HP   ++  A+       GDGT   +++ GELL  ++  I
Sbjct: 76  DIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLI 118

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 10  KTPG----DSCLVKGVVLDHG-ARHPDMPKSVKNAHILTCNISMEYEK 52
           K  G    +S ++KG+V +     H       K   +      ++   
Sbjct: 211 KIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIAN 258

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 574 NSGFDAQDTLVKL-------QEACGEAPGVAVGVDVN---SGEVLNPTSAGIYDNLTVKR 623
            +G D  + L  L       +    +   +  GVD++      V +     IYD L  K+
Sbjct: 466 TAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKK 525

Query: 624 QIINS 628
             IN 
Sbjct: 526 FAINV 530

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 125 LVKGVVLNHG-ARHPDMPKSVKNAHI--LTCNISMEYEKSDVCIIL 167
           ++KG+V N     H       K   +   TC + +   ++   ++L
Sbjct: 222 VIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLL 267

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score =  179 bits (456), Expect = 3e-53
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 39/211 (18%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           +++GV++N    HP M + +KN  I+  + S+EY+K  +     EI+             
Sbjct: 6   VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG-ESQTDIEIT----REEDFT--- 57

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                                       +L+  + YI ++   + +  PD   +++   G
Sbjct: 58  ---------------------------RILQMEEEYIHQLCEDIIQLKPDVVITEK---G 87

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVFEHVL 345
           I   +     R  + A+RR ++ +  R++ ACG   ++  E L    +G  AG +    +
Sbjct: 88  ISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKI 147

Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQ 376
           G+E FTF+ +CK+P++ TILL+G + H    
Sbjct: 148 GDEYFTFITDCKDPKACTILLRGASHHHHHH 178

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
          DSC+++GV+++    HP M + +KN  I+  + S+EY+K 
Sbjct: 3  DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG 42

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score = 66.1 bits (162), Expect = 8e-13
 Identities = 13/39 (33%), Positives = 25/39 (64%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           +++GV++N    HP M + +KN  I+  + S+EY+K + 
Sbjct: 6   VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 44

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            GV++N    HP M + +KN  I+  + S+EY+K + 
Sbjct: 8   RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 44

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score =  154 bits (392), Expect = 2e-44
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 38/193 (19%)

Query: 168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTA 227
           + G+V++    H  MP  VKNA I   + ++E +K+ +   + +IS      ++IQ    
Sbjct: 1   MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-EIEAKVQIS----DPSKIQ---- 51

Query: 228 SLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGI 287
                                     + L Q      ++  K+ K   +     +   GI
Sbjct: 52  --------------------------DFLNQETNTFKQMVEKIKKSGANVVLCQK---GI 82

Query: 288 DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE 347
           D  +    A+EGI A+RR K+ +ME+L+ A G   +  ++ L P+ LG A +V E  +G+
Sbjct: 83  DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD 142

Query: 348 EKFTFVEECKNPQ 360
           ++ TFV  CKN  
Sbjct: 143 DRMTFVMGCKNHH 155

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 126 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           + G+V++    H  MP  VKNA I   + ++E +K+++
Sbjct: 1   MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 38

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 18 VKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
          + G+V+D    H  MP  VKNA I   + ++E +K+
Sbjct: 1  MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT 36

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            G+V++    H  MP  VKNA I   + ++E +K+++
Sbjct: 2   SGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 60/504 (11%), Positives = 133/504 (26%), Gaps = 178/504 (35%)

Query: 3   ELMEMKHKTPGD--SCLVKGVVLDHGARH-PDMPKSV-KNA---HILTC--NISMEY--- 50
           E  E +++   D  S      V +   +   DMPKS+       HI+     +S      
Sbjct: 10  ETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 51  ----EKSGSG-------------PWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGA 93
                K                  +  +P    ++ E+  P M  +  I +   + N   
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 94  RHPDM----PKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMP---KSV-- 144
                     +           +              K V++  G     +    K+   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPA-----------KNVLI-DG-----VLGSGKTWVA 167

Query: 145 ----KNAHILTCN------ISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTC 194
                +  +          ++++   S   ++              +M + +   + +  
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--------------EMLQKL--LYQIDP 211

Query: 195 NISMEYEKSSQGGHQPEISLAKGIANQI---QHPTASLIARASTAMDDMTGDGTT----- 246
           N +   + SS    +   S+   +   +    +    L+      + ++  +        
Sbjct: 212 NWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLV------LLNVQ-NAKAWNAFN 263

Query: 247 --STVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP-QSLDLFA------- 296
               +L+           + +             + D +   + P +   L         
Sbjct: 264 LSCKILLT-----TRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 297 ----RE---------GIIA--LRRAKRR-------NMERLSLACGGTAM-NSVEGLEPA- 332
               RE          IIA  +R            N ++L+     T + +S+  LEPA 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-----TIIESSLNVLEPAE 370

Query: 333 --HLGYAGSVF-------EHVLG--------EEKFTFVEEC-------KNPQSVTILLKG 368
              +    SVF         +L          +    V +        K P+  TI +  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-- 428

Query: 369 PNKHTLAQTKDAVRDGLRAIKNTI 392
               ++        +   A+  +I
Sbjct: 429 ---PSIYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 66/448 (14%), Positives = 133/448 (29%), Gaps = 133/448 (29%)

Query: 156 MEYEKSDVCIILVKGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISL 214
            +Y+  D+  +     V N   +   DMPKS+     L+     E +          I  
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-----LS---KEEID---------HI-- 54

Query: 215 AKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFA 274
                  I    A  ++        +           + E+L+    ++    +K  +  
Sbjct: 55  -------IMSKDA--VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQ 104

Query: 275 PDCST----SDRYRTGIDPQSLDLF--AR-EGIIALRRA--KRRNMERLSL----ACGGT 321
           P   T      R R   D Q    +  +R +  + LR+A  + R  + + +      G T
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 322 AMNSVEGLEPAHLGYAGSVFEHVLGEEKFTF------VEECKNPQSVTILLKGPNK--HT 373
            +             A  V      + K  F      ++ C +P++V  +L    K  + 
Sbjct: 165 WV-------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQ 208

Query: 374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEA 433
           +     +  D    IK  I                   +Q     +     L  + Y   
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS-----------------IQAELRRL-----LKSKPYENC 246

Query: 434 LLII-----PKTIAVNSGFDAQ-DTLVKLQEACGEAPGVA--VGVDVNSGEVLNPTSAGI 485
           LL++      K       F+     L+  +        V   +     +   L+  S  +
Sbjct: 247 LLVLLNVQNAKAWNA---FNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHHSMTL 298

Query: 486 YDNLTVKRQIINSWI----------ISGLHPRVITEGFTQARLKALEVLESLKITTPPSR 535
             +    + ++  ++          +   +PR +          ++ + ES++     + 
Sbjct: 299 TPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRL----------SI-IAESIRD--GLAT 343

Query: 536 -EILLDVARTSLRTKVERELADLLAEPN 562
            +    V    L T +E  L  L  EP 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVL--EPA 369

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 76/499 (15%), Positives = 145/499 (29%), Gaps = 143/499 (28%)

Query: 13  GDSCLVKGVVLDHGARHPDMPKSVKNAHILT---CNIS---MEYEKS----GSGPWCATP 62
           G + +   V L +      M   +     L    CN     +E  +         W +  
Sbjct: 162 GKTWVALDVCLSYK-VQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-- 215

Query: 63  GHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKS------VKNAHILTCNISMEY 116
                R + +       H I+ E   L    +             V+NA           
Sbjct: 216 -----RSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAKAW-------- 259

Query: 117 EKSDV-CIILV----KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGV 171
              ++ C IL+    K V         D   +    HI   + SM     +V  +L+K  
Sbjct: 260 NAFNLSCKILLTTRFKQVT--------DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-- 309

Query: 172 VLNHGARHPDMPKSVKNAHILTCNISM---------------EYEKSSQGGHQPEISLAK 216
            L+   R  D+P+ V   +     +S+               ++    +     E SL  
Sbjct: 310 YLDC--RPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 217 GIANQIQH--------PTASLIARASTAMDDMTGDGTTSTVLVI--GELLKQADIYIAEV 266
               + +         P ++ I                + +L +   +++K   + +   
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI---------------PTILLSLIWFDVIKSDVMVVVN- 409

Query: 267 NLKMHKFAPDCSTSDRYRTGIDPQSLDLFA-REGIIALRRA--KRRNMERLSLACGGTAM 323
             K+HK++            I    L+L    E   AL R+     N+ + +        
Sbjct: 410 --KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIP 466

Query: 324 NSVEGLEPAHLGYAGSVFEHVLGEEK-------------FTFVEECKNPQSVTILLKGPN 370
             ++    +H+G+      H+   E              F F+E+ K      I      
Sbjct: 467 PYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQ-K------IRHDSTA 513

Query: 371 KHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY-KNTVKGKS----RL 425
            +      + ++  L+  K  I D    P       A    L    +N +  K     R+
Sbjct: 514 WNASGSILNTLQQ-LKFYKPYICDND--PKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

Query: 426 GIQA-----YAEALLIIPK 439
            + A     + EA   + +
Sbjct: 571 ALMAEDEAIFEEAHKQVQR 589

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 543 RTSLRTKVERELADLLAEPNSVPSLRNSATV 573
           + +L+ K++  L   L   +S P+L   AT+
Sbjct: 19  KQALK-KLQASLK--LYADDSAPALAIKATM 46

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLII 437
           K    D L A +  +++G +VPG G   + A  A++     ++G    G +    AL   
Sbjct: 391 KHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEP 449

Query: 438 PKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
            + IA N+G++    + ++            G +  +GE ++   AGI D   V R
Sbjct: 450 ARQIAENAGYEGSVIVQQILAETK---NPRYGFNAATGEFVDMVEAGIVDPAKVTR 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	100.0
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	100.0
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	100.0
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	100.0
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	100.0
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	100.0
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	100.0
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	100.0
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	100.0
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	100.0
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	100.0
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	100.0
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	100.0
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	100.0
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	100.0
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	100.0
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	100.0
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	100.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	100.0
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	100.0
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	100.0
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	100.0
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	100.0
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	100.0
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	100.0
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	100.0
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	100.0
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	100.0
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	100.0
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	100.0
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	100.0
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	100.0
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	100.0
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	100.0
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	100.0
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	100.0
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	100.0
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	100.0
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	100.0
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	100.0
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	100.0
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	100.0
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	100.0
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	100.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	100.0
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	100.0
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	100.0
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	100.0
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	99.97
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	99.97
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	99.97
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	99.96
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	99.96
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	99.93
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	99.45
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	99.29
3m6c_A	194	60 kDa chaperonin 1; chaperone, ATP-binding, nucle	98.19
1srv_A	145	Protein (groel (HSP60 class)); chaperone, cell div	98.15
3osx_A	201	60 kDa chaperonin; alpha, beta, apical domain, cha	98.03

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=3.1e-56  Score=496.59  Aligned_cols=366  Identities=25%  Similarity=0.358  Sum_probs=322.8

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCcccccccc-ceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHIL-TCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~-~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      .+..+. .++.+|+..+  .++++.+++++|.. ....    +......+++ +++|++++||++.||++++|++|++++
T Consensus       139 ~l~~va-~tsl~sK~i~~~~~~~~~i~vdav~~-V~~~----~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~  212 (515)
T 3iyg_G          139 TMLNII-NSSITTKVISRWSSLACNIALDAVKT-VQFE----ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV  212 (515)
T ss_pred             HHHHHH-HHHhcCCchhhHHHHHHHHHHHHHHh-cccc----cCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCC
Confidence            343333 3555667664  45667777777753 1100    0000112333 389999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .||+||++++||||++++|+|+|++++.+.         ++.+++..++.+++.+|++++++.        |..+.    
T Consensus       213 ~~~~m~~~ien~kIll~~~~Le~~k~e~~~---------~v~is~~~~l~~~l~~E~~~l~~~--------v~kI~----  271 (515)
T 3iyg_G          213 THPRMRRYIKNPRIVLLDSSLEYKKGESQT---------DIEITREEDFTRILQMEEEYIQQL--------CEDII----  271 (515)
T ss_pred             CCCCCcceeeeeEEEEEcccccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----
Confidence            999999999999999999999999999876         789999999999999999999999        88888    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc-
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-  336 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~-  336 (629)
                               ..++    ++    ++++++|++.+++||++++|.+++++++.+++|||++|||++++++++++++.+|+ 
T Consensus       272 ---------~~g~----~v----Ii~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~  334 (515)
T 3iyg_G          272 ---------QLKP----DV----VITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTG  334 (515)
T ss_pred             ---------hCCC----CE----EEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhCCeeeccccccChhhcCCc
Confidence                     4454    33    46799999999999999999999999999999999999999999999999999999 


Q ss_pred             cceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhh
Q psy14945        337 AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK  416 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~  416 (629)
                      |+.+++.++++++++||++|+++..|||+|||+++.+++|.+|+++||++++|++++++.+|||||++|++++.+|++++
T Consensus       335 a~~v~~~~~g~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~  414 (515)
T 3iyg_G          335 AGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS  414 (515)
T ss_pred             ccEEEEEEECCceEEEEeCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHh
Q psy14945        417 NTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  496 (629)
Q Consensus       417 ~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l  496 (629)
                      .++++.+|+++++||+||+.||++|++|+|+|+.+++++|+..|...++.++|+|+.+|++.|+.+.|||||+.||+++|
T Consensus       415 ~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~al  494 (515)
T 3iyg_G          415 KAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTY  494 (515)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcHHHHHHHH
Confidence            89999999999999999999999999999999999999999888642345789999999999999999999999999999


Q ss_pred             hhhhhcCCCCeEEe
Q psy14945        497 NSWIISGLHPRVIT  510 (629)
Q Consensus       497 ~~a~e~a~~~~iV~  510 (629)
                      +.|+++|...+.++
T Consensus       495 ~~A~e~a~~iL~iD  508 (515)
T 3iyg_G          495 KTAVETAVLLLRID  508 (515)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988766554

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.8e-56  Score=498.35  Aligned_cols=363  Identities=49%  Similarity=0.740  Sum_probs=322.6

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+|+...  .+.|+.+++++|..-. .       +....++++++|++++||+..||++++|++|++++.||+||+++
T Consensus       146 tsl~sKi~~~~~d~la~l~vdaV~~V~-~-------~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~i  217 (517)
T 3iyg_Z          146 TSLRTKVHAELADVLTEAVVDSILAIK-K-------QDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRV  217 (517)
T ss_pred             HHhccccchhHHHHHHHHHHHHhheec-c-------CCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccc
Confidence            444555443  5778888888886311 0       11234678899999999999999999999999999999999999


Q ss_pred             cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV  266 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~  266 (629)
                      +||+|++++++|+|+|++.+.         ++.+++..++.+++.+|++++.+.        +..|..++.+.   ... 
T Consensus       218 en~kIll~~~~le~~k~e~~~---------~~~i~~~~~l~~~~~~E~~~i~~~--------v~~I~~~~~~v---~~~-  276 (517)
T 3iyg_Z          218 EDAYILTCNVSLEYEKTEVNS---------GFFYKSAEEREKLVKAERKFIEDR--------VKKIIELKKKV---CGD-  276 (517)
T ss_pred             cCCeEEEecccccccccccce---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhh---hhc-
Confidence            999999999999999999876         899999999999999999999999        88887533110   000 


Q ss_pred             hhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCC-CcccceEEEEEE
Q psy14945        267 NLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAH-LGYAGSVFEHVL  345 (629)
Q Consensus       267 ~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~-lG~~~~v~e~~i  345 (629)
                      .-++    +    .++++++|++.+++||++++|++++++++++++|||++|||++++++++++++. +|+|+ +++.++
T Consensus       277 ~~~~----l----vIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~i  347 (517)
T 3iyg_Z          277 SDKG----F----VVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTL  347 (517)
T ss_pred             cCCc----e----EEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEE
Confidence            0011    1    156799999999999999999999999999999999999999999999999999 99999 999999


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHH
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRL  425 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~  425 (629)
                      ++++++||++|+++..|||+|||+++.+++|.+|+++||++++|++++++++|||||++|++++.+|++++.++++.+|+
T Consensus       348 g~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~  427 (517)
T 3iyg_Z          348 GEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQL  427 (517)
T ss_pred             cCceEEEEeCCCCchhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        426 GIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       426 ~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++++||+||+.+|++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.||.+.|||||+.||+++++.|+++|..
T Consensus       428 ~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~  506 (517)
T 3iyg_Z          428 GVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE-SGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATN  506 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcEEEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864 457899999999999999999999999999999999999987


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      .+.|+
T Consensus       507 iL~iD  511 (517)
T 3iyg_Z          507 ILLVD  511 (517)
T ss_pred             HHHHH
Confidence            76665

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1e-55  Score=494.02  Aligned_cols=366  Identities=24%  Similarity=0.338  Sum_probs=324.7

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR  178 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~  178 (629)
                      .+..+. .++.+||...  .++|+.++++|+..- +...   +......++++|+|++++|+++.||++++|++|++++.
T Consensus       141 ~l~~va-~tsl~sK~~~~~~~~i~~livdAv~~V-~~~~---~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~  215 (529)
T 3iyg_A          141 CLINAA-KTSMSSKVIGINGDFFANLVVDAVLAI-KYTD---IRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVG  215 (529)
T ss_pred             HHHHHH-HHHhccCcccccHHHHHHHHHHHHHHH-hhhc---cCCCcccccceEEEEEecCCCccceEEEeeeEEecCcc
Confidence            344333 3555666654  577888888888742 1100   01112345677999999999999999999999999999


Q ss_pred             CCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhh
Q psy14945        179 HPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ  258 (629)
Q Consensus       179 ~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~  258 (629)
                      ||+||++++||||++++|+|+|++++.+.         ++.+++..++..+..+|++++...        +..|.     
T Consensus       216 ~~~m~~~ien~kIlll~~~le~~k~e~~~---------~v~i~~~~~~~~i~~~E~~~l~~~--------v~kI~-----  273 (529)
T 3iyg_A          216 SQGMPKRIVNAKIACLDFSLQKTKMKLGV---------QVVITDPEKLDQIRQRESDITKER--------IQKIL-----  273 (529)
T ss_pred             cccCCcccCCceEEEecCCcccccccCCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----
Confidence            99999999999999999999999999876         899999999999999999999999        88887     


Q ss_pred             hHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccccc------CcC
Q psy14945        259 ADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGL------EPA  332 (629)
Q Consensus       259 Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l------~~~  332 (629)
                              ..++    .+    ++++++|++.+++||++++|.+++++++.+++|||++|||++++++..+      ++.
T Consensus       274 --------~~g~----nv----vi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~  337 (529)
T 3iyg_A          274 --------ATGA----NV----ILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEAS  337 (529)
T ss_pred             --------hcCC----CE----EEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccChh
Confidence                    4443    22    4679999999999999999999999999999999999999999998665      367


Q ss_pred             CCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHH
Q psy14945        333 HLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHAL  412 (629)
Q Consensus       333 ~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L  412 (629)
                      ++|+|+.+++.+++++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|
T Consensus       338 ~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L  417 (529)
T 3iyg_A          338 MLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYL  417 (529)
T ss_pred             hCccceEEEEEEeCCceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCC--------ceEEEEeccCCCCCCCccc
Q psy14945        413 QNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG--------VAVGVDVNSGEVLNPTSAG  484 (629)
Q Consensus       413 ~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~--------~~~Gid~~t~~i~d~~e~~  484 (629)
                      ++++.++++.+|+++++||+||+.||++|++|+|+|+.+++++|+..|.. ++        .++|+|+.+|++.||.+.|
T Consensus       418 ~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~~~~~~~~~G~d~~~g~~~d~~~~g  496 (529)
T 3iyg_A          418 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNE-AQVNPERKNLKWIGLDLVNGKPRDNKQAG  496 (529)
T ss_pred             HHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cccccccccCceeeeeCCCCCccChhhcc
Confidence            99999999999999999999999999999999999999999999998864 22        5799999999999999999


Q ss_pred             ccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        485 IYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       485 I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ||||+.||+++|+.|+++|...+.|+
T Consensus       497 V~dp~~vk~~al~~A~e~a~~iL~iD  522 (529)
T 3iyg_A          497 VFEPTIVKVKSLKFATEAAITILRID  522 (529)
T ss_pred             CEecHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999998877765

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=5.1e-55  Score=486.47  Aligned_cols=352  Identities=23%  Similarity=0.334  Sum_probs=321.2

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCC---c
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDM---P  183 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m---~  183 (629)
                      ++.+||...  .++|+.++++|+..- +.          ..+++.|+|++++||++.||++++|++|++++.||+|   |
T Consensus       152 tsl~sK~~s~~~~~i~~livdAv~~V-~~----------~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p  220 (515)
T 3iyg_H          152 TALSSKLISQQKAFFAKMVVDAVMML-DD----------LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQP  220 (515)
T ss_pred             HHhcCCcccccHHHHHHHHHHHHHHh-cc----------cCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCC
Confidence            445566543  577888889888743 21          2356789999999999999999999999999999975   8


Q ss_pred             ccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHH
Q psy14945        184 KSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI  263 (629)
Q Consensus       184 ~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll  263 (629)
                      ++++||||++++++|+|++++.+.         ++.+++..++.+++.+|++++...        +..+.          
T Consensus       221 ~~~en~kIll~~~~Le~~k~e~~~---------~v~is~~~~l~~~~~~E~~~l~~~--------le~I~----------  273 (515)
T 3iyg_H          221 KKYHNPMIALLNVELELKAEKDNA---------EIRVHTVEDYQAIVDAEWNILYDK--------LEKIH----------  273 (515)
T ss_pred             ccccccEEEEEcccccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----------
Confidence            999999999999999999999876         889999999999999999999998        88887          


Q ss_pred             HHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEE
Q psy14945        264 AEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH  343 (629)
Q Consensus       264 ~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~  343 (629)
                         ..++    .+    ++++++|++.+++||++++|++++++++.+++|||++|||++++++++++++.+|+|+.+++.
T Consensus       274 ---~~g~----~v----vi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~  342 (515)
T 3iyg_H          274 ---HSGA----KV----VLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEET  342 (515)
T ss_pred             ---hcCC----cE----EEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEE
Confidence               3443    22    467999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcch
Q psy14945        344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKS  423 (629)
Q Consensus       344 ~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~  423 (629)
                      +++++++++|++|+++..|||++||+++.+++|.+|+++||++++|++++++.+|||||++|++++.+|++++.++++.+
T Consensus       343 ~ig~~~~~~i~g~~~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~e  422 (515)
T 3iyg_H          343 QIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQ  422 (515)
T ss_pred             EEcCeEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcC
Q psy14945        424 RLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISG  503 (629)
Q Consensus       424 k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a  503 (629)
                      |+++++||+||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|
T Consensus       423 q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a  501 (515)
T 3iyg_H          423 QLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ-GGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAA  501 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc-cCCCeeEeCCCCcccccHhccCEECHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864 4567899999999999999999999999999999999988


Q ss_pred             CCCeEEe
Q psy14945        504 LHPRVIT  510 (629)
Q Consensus       504 ~~~~iV~  510 (629)
                      ...+.++
T Consensus       502 ~~iL~iD  508 (515)
T 3iyg_H          502 CLIVSVD  508 (515)
T ss_pred             HHHHHHH
Confidence            8766554

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=100.00  E-value=4.6e-55  Score=489.73  Aligned_cols=354  Identities=30%  Similarity=0.417  Sum_probs=320.9

Q ss_pred             hhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccccc
Q psy14945        110 CNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVK  187 (629)
Q Consensus       110 ~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~  187 (629)
                      +.+||...  .++|+.++++|+..- +..       ....++++|+|++++|+++.||++++|++|++++.||+||++++
T Consensus       157 sl~sK~~~~~~~~i~~livdAv~~V-~~~-------~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~  228 (543)
T 3ruv_A          157 SITGKGAEKAKEKLAEIIVEAVSAV-VDD-------EGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVT  228 (543)
T ss_dssp             HHHHTCGGGCCHHHHHHHHHHHHHH-CCT-------TSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEE
T ss_pred             HhcccccchhHHHHHHHHHHHHHHh-hcc-------CCCcccceEEEEEcCCCCcccceeecceEEeccccCcccccccc
Confidence            33444443  477888888888753 221       01246778999999999999999999999999999999999999


Q ss_pred             CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHh
Q psy14945        188 NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVN  267 (629)
Q Consensus       188 n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~  267 (629)
                      ||||++++++|+|++++.+.         ++.+++..++.+++.+|++++...        +..+.             .
T Consensus       229 n~kIll~~~~Le~~k~e~~~---------~v~Iss~~~l~~~~~~E~~~l~~~--------ve~I~-------------~  278 (543)
T 3ruv_A          229 DAKIALLNCAIEIKETETDA---------EIRITDPAKLMEFIEQEEKMLKDM--------VAEIK-------------A  278 (543)
T ss_dssp             EEEEEEESSCBSCCCCSSCC---------CEEECSTTHHHHHHHHHHHHHHHH--------HHHHH-------------H
T ss_pred             CcEEEEEcccccccccccCc---------eeEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-------------H
Confidence            99999999999999999876         789999999999999999999999        88887             3


Q ss_pred             hccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcC
Q psy14945        268 LKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE  347 (629)
Q Consensus       268 ~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~  347 (629)
                      .++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.++++
T Consensus       279 ~g~----~v----vi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~  350 (543)
T 3ruv_A          279 SGA----NV----LFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISG  350 (543)
T ss_dssp             HTC----SE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETT
T ss_pred             cCC----CE----EEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCC
Confidence            443    22    4679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHH
Q psy14945        348 EKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGI  427 (629)
Q Consensus       348 ~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i  427 (629)
                      ++++||++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|+++
T Consensus       351 ~~~~~i~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i  430 (543)
T 3ruv_A          351 DSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAV  430 (543)
T ss_dssp             EEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             ceEEEEECCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             HHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCe
Q psy14945        428 QAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPR  507 (629)
Q Consensus       428 ~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~  507 (629)
                      ++||+||+.||++|++|+|+|+.+++++|+..|...++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|...+
T Consensus       431 ~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL  510 (543)
T 3ruv_A          431 RAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL  510 (543)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998851255789999999999999999999999999999999999887664


Q ss_pred             EE
Q psy14945        508 VI  509 (629)
Q Consensus       508 iV  509 (629)
                      .+
T Consensus       511 ~i  512 (543)
T 3ruv_A          511 RI  512 (543)
T ss_dssp             TC
T ss_pred             hH
Confidence            43

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=100.00  E-value=1.9e-55  Score=493.01  Aligned_cols=358  Identities=28%  Similarity=0.394  Sum_probs=323.4

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+||...  .++|+.++++|+..- +...    ......++++|+|++++|+++.||++++|++|++++.||+||+++
T Consensus       167 tsl~sK~~~~~~~~i~~livdAv~~V-~~~~----~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~i  241 (553)
T 3ko1_A          167 TSLSSKAVAGAREYIADIVVKAVTQV-AELR----GDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRL  241 (553)
T ss_dssp             HHHTTSSCCTTHHHHHHHHHHHHHHH-CCCT----TSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCC
T ss_pred             HHhhHHhhhhHHHHHHHHHHHHHHHH-HHhc----CCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCcccc
Confidence            444555543  477889999988753 2210    001135678899999999999999999999999999999999999


Q ss_pred             cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV  266 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~  266 (629)
                      +||||++++++|+|++++.+.         ++.+++..++.+++.+|++++...        +..+.             
T Consensus       242 en~kIll~d~~Le~~k~e~~~---------~v~Iss~~~l~~~~~~E~~~l~~~--------vekI~-------------  291 (553)
T 3ko1_A          242 ENAKIALIDASLEVEKPELDA---------EIRINDPTQMQKFLDEEENLIKEK--------VDKIL-------------  291 (553)
T ss_dssp             BSCEEEEECSCBSCCCCTTTC---------CCCCCSHHHHHHHHHHHHHHHHHH--------HHHHH-------------
T ss_pred             ccceEEEecCcccccCcccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-------------
Confidence            999999999999999999876         788999999999999999999998        88887             


Q ss_pred             hhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEc
Q psy14945        267 NLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG  346 (629)
Q Consensus       267 ~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~  346 (629)
                      ..++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.+++
T Consensus       292 ~~g~----~v----vI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig  363 (553)
T 3ko1_A          292 ATGA----NV----IICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG  363 (553)
T ss_dssp             TTCC----SE----EECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCS
T ss_pred             hhcc----eE----EEeccChHHHHHHHHHhcchhhhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcC
Confidence            4443    22    467999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHH
Q psy14945        347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLG  426 (629)
Q Consensus       347 ~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~  426 (629)
                      +++++||++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|++
T Consensus       364 ~d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~  443 (553)
T 3ko1_A          364 EDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLA  443 (553)
T ss_dssp             SSCCEEEESCSSSSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHH
T ss_pred             cceEEEeccCCCCceEEEeeeccHHHHHHHHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             HHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCC-ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        427 IQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG-VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       427 i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~-~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      +++|++||+.||++|++|+|+|+.+++++|+..|.. ++ .++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|..
T Consensus       444 i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~  522 (553)
T 3ko1_A          444 VEAYANALESLVSILIENAGFDPIDLLMKLRSTHEN-ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATL  522 (553)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCS-GGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhC-cCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheE
Confidence            999999999999999999999999999999998864 33 6799999999999999999999999999999999998887


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      .+.++
T Consensus       523 iL~iD  527 (553)
T 3ko1_A          523 VLRID  527 (553)
T ss_dssp             HHHEE
T ss_pred             EEehH
Confidence            76554

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=100.00  E-value=2.3e-54  Score=481.38  Aligned_cols=351  Identities=24%  Similarity=0.317  Sum_probs=320.5

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+||...  .++|+.++++|+..- +..          .+++.|+|++++||++.||++++|++|++++.|| ||+++
T Consensus       152 tslssK~~~~~~~~i~~livdAv~~V-~~~----------~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~-m~~~~  219 (513)
T 3iyg_B          152 TTLSSKLLTHHKDHFTKLAVEAVLRL-KGS----------GNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN-QPKRI  219 (513)
T ss_pred             hhhcccccccchHHHHHHHHHHHHHh-ccc----------CCcCeEEEEEeCCCCccceeEEeeEEEeccccCC-Cceee
Confidence            445666543  567888999888743 221          3578899999999999999999999999999998 99999


Q ss_pred             cCeeEEEeeccccccccc-cCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSS-QGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~-~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      +||||++++++|+|++++ .+.         ++.+++..++..++.+|++++.+.        +..+.            
T Consensus       220 en~kIll~~~~Le~~k~e~~~~---------~v~iss~~~l~~~~~~E~~~l~~~--------le~I~------------  270 (513)
T 3iyg_B          220 ENAKILIANTGMDTDKIKIFGS---------RVRVDSTAKVAEIEHAEKEKMKEK--------VERIL------------  270 (513)
T ss_pred             cCceEEEEcCCcccccccccCC---------ceEEcCHHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            999999999999999998 766         788999999999999999999998        88887            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL  345 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i  345 (629)
                       ..++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++..+
T Consensus       271 -~~g~----~v----vi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~i  341 (513)
T 3iyg_B          271 -KHGI----NC----FINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMI  341 (513)
T ss_pred             -hcCC----CE----EEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEE
Confidence             3443    22    46799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHH
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRL  425 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~  425 (629)
                      +++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++.+|||||++|++++.+|++++.++++.+|+
T Consensus       342 g~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~  421 (513)
T 3iyg_B          342 GEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAV  421 (513)
T ss_pred             CCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        426 GIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       426 ~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++++|++||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|..
T Consensus       422 ~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~  500 (513)
T 3iyg_B          422 AMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSE-GKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEV  500 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCceeecCCCCCccchHhccCEecHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864 556899999999999999999999999999999999998887


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      .+.++
T Consensus       501 iL~id  505 (513)
T 3iyg_B          501 ILRVD  505 (513)
T ss_pred             HHHHH
Confidence            66554

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=100.00  E-value=6.5e-55  Score=484.35  Aligned_cols=367  Identities=26%  Similarity=0.377  Sum_probs=306.2

Q ss_pred             hhhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCcccccc-ccceeEEEecCCCccceEEEEeEEEec
Q psy14945         99 PKSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAH-ILTCNISMEYEKSDVCIILVKGVVLNH  175 (629)
Q Consensus        99 ~~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~i~i~~i~Ggs~~dS~li~Gvv~~~  175 (629)
                      ++.+.... .|+.+||...  .++|+.++++|+..- +...    ......+ +++|+|++++|+++.||++++|++|++
T Consensus       101 ~~~l~~va-~tsl~sKi~~~~~~~i~~li~dAv~~v-~~~~----~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk  174 (500)
T 3aq1_B          101 EAALIKIA-GTAITGKGAEAYKEKLSALTVKAVRSI-VEEE----EDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDK  174 (500)
T ss_dssp             HHHHHHHH-HTTCCSSSTTSSHHHHHHHHHHHHTTS-EECC----SSSCEECHHHHEEEEEEESSCGGGCEEESEEEESC
T ss_pred             HHHHHHHH-HHHhhcccccccHHHHHHHHHHHHHHh-cccc----cCCccccccccEEEEEecCCCccceEEEeeeEEee
Confidence            34444444 4666777775  577999999999752 2100    0001234 678999999999999999999999999


Q ss_pred             cCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHH
Q psy14945        176 GARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGEL  255 (629)
Q Consensus       176 ~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~el  255 (629)
                      ++.||+||++++||||++++++|++++++.+.         ++.+++..++.+++.+|++++...        +..+.  
T Consensus       175 ~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~---------~v~i~~~~~l~~~~~~E~~~l~~~--------le~I~--  235 (500)
T 3aq1_B          175 ERSHPNMPEKVENAKILLLSCPVEFRKTEVDS---------EIKITSPGQMQLFLDQEEKMMREM--------AEKVI--  235 (500)
T ss_dssp             CCSSTTSCSEEEEEEEEEESSCBCC----------------------------------CHHHHH--------HHHHH--
T ss_pred             cCCCCCCcccccCCEEEEEeCCccccccccce---------eEeeCCHHHHHHHHHHHHHHHHHH--------HHHHH--
Confidence            99999999999999999999999999999876         788999999999999999999998        88887  


Q ss_pred             HhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCc
Q psy14945        256 LKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLG  335 (629)
Q Consensus       256 L~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG  335 (629)
                                 ..++    .+    ++++++|++.+++||.+++|.+++++++++++|||++|||++++++++++++.+|
T Consensus       236 -----------~~g~----~l----vi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG  296 (500)
T 3aq1_B          236 -----------ASGA----NV----VFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVG  296 (500)
T ss_dssp             -----------TTCC----SE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCE
T ss_pred             -----------HhCc----CE----EEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCC
Confidence                       4443    22    4679999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        336 YAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       336 ~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      +|+.+++.+++++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|+++
T Consensus       297 ~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~  376 (500)
T 3aq1_B          297 TAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEY  376 (500)
T ss_dssp             EEEEEEEEECSSSEEEEEEEETTCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHH
T ss_pred             CceEEEEEEecCeEEEEEECCCCCceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHH
Q psy14945        416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  495 (629)
Q Consensus       416 ~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~  495 (629)
                      +.++++.+|+++++||+||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++
T Consensus       377 ~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~a  455 (500)
T 3aq1_B          377 ASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEK-GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQA  455 (500)
T ss_dssp             HHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHT-TCTTEEECTTTCCEEETTTTTCEEEHHHHHHH
T ss_pred             hhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCeeEeCCCCCccchHhcCCCCCHHHHHHH
Confidence            98889999999999999999999999999999999999999988764 45679999999999999999999999999999


Q ss_pred             hhhhhhcCCCCeEEe
Q psy14945        496 INSWIISGLHPRVIT  510 (629)
Q Consensus       496 l~~a~e~a~~~~iV~  510 (629)
                      |+.|+++|...+.++
T Consensus       456 l~~A~e~a~~iL~iD  470 (500)
T 3aq1_B          456 INAAMEATVMILRID  470 (500)
T ss_dssp             HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887776

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=4e-54  Score=479.98  Aligned_cols=357  Identities=23%  Similarity=0.302  Sum_probs=320.0

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+|+..+  .+.|+.+++++|..- ...      .....++++|+|++++||++.||++++|++|++++.||+||+.+
T Consensus       149 tsl~sK~i~~~~~~l~~l~~dav~~V-~~~------~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~  221 (515)
T 3iyg_E          149 TTLGSKVVNSCHRQMAEIAVNAVLTV-ADM------QRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQV  221 (515)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHhh-ccc------ccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccC
Confidence            333455544  467777888887631 110      01124578899999999999999999999999999999999999


Q ss_pred             cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV  266 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~  266 (629)
                      +||||++++|+|++++++.+.         .+.+++..++.+++.+|++++...        +..+.             
T Consensus       222 ~~~kIall~~~le~~k~~~~~---------~~~is~~~~l~~~~~~E~~~l~~~--------lekI~-------------  271 (515)
T 3iyg_E          222 EDAKIAILTCPFEPPKPKTKH---------KLDVTSVEDFKALQKYEKEKFEEM--------IRQIK-------------  271 (515)
T ss_pred             CCceEEEEcCccccccccccc---------eeeeCCHHHHHHHHHHHHHHHHHH--------HHHHH-------------
Confidence            999999999999999988765         788999999999999999999998        88887             


Q ss_pred             hhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEc
Q psy14945        267 NLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG  346 (629)
Q Consensus       267 ~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~  346 (629)
                      ..++    .+    ++++++|++.++++|.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.+++
T Consensus       272 ~~g~----~v----vi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig  343 (515)
T 3iyg_E          272 ETGA----NL----AVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFG  343 (515)
T ss_pred             hcCC----CE----EEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEEEEec
Confidence            3343    22    457999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C--eeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchH
Q psy14945        347 E--EKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSR  424 (629)
Q Consensus       347 ~--~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k  424 (629)
                      +  +++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|
T Consensus       344 ~~k~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q  423 (515)
T 3iyg_E          344 TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQ  423 (515)
T ss_pred             cccceEEEEEcCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhccCCcHHH
Confidence            7  89999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        425 LGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       425 ~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      +++++|++||+.||++|++|+|+|+.+++.+|+..|...++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|.
T Consensus       424 ~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~  503 (515)
T 3iyg_E          424 YAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVR  503 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988864245689999999999999999999999999999999999988


Q ss_pred             CCeEEe
Q psy14945        505 HPRVIT  510 (629)
Q Consensus       505 ~~~iV~  510 (629)
                      ..+.|+
T Consensus       504 ~iL~iD  509 (515)
T 3iyg_E          504 MILKID  509 (515)
T ss_pred             HHHhHH
Confidence            776654

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=100.00  E-value=2.3e-54  Score=484.39  Aligned_cols=359  Identities=25%  Similarity=0.394  Sum_probs=325.5

Q ss_pred             hhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccc
Q psy14945        108 LTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKS  185 (629)
Q Consensus       108 ~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~  185 (629)
                      .|+.+||...  .++|+.++++|+..- +...    ......++++|+|++++|+++.||++++|++|++++.||+||++
T Consensus       157 ~tsl~sKi~~~~~~~i~~livdAv~~v-~~~~----~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~  231 (543)
T 1a6d_B          157 QTSLNSKSASVAKDKLAEISYEAVKSV-AELR----DGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDV  231 (543)
T ss_dssp             HHHHTTSGGGGGHHHHHHHHHHHHHHH-EEEC----SSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSE
T ss_pred             HHHhccccccccHHHHHHHHHHHHHHh-cccc----cCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcce
Confidence            4555666665  477999999998753 1100    00012457789999999999999999999999999999999999


Q ss_pred             ccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        186 VKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       186 i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      ++||||++++++|++++++.+.         ++.+++..++.+++.+|++++...        +..+.            
T Consensus       232 ien~kIll~~~~Le~~k~e~~~---------~v~i~~~~~l~~~~~~E~~~l~~~--------le~I~------------  282 (543)
T 1a6d_B          232 VKDAKIALLDAPLEIKKPEFDT---------NLRIEDPSMIQKFLAQEENMLREM--------VDKIK------------  282 (543)
T ss_dssp             EEEEEEEEESSCBSCCCCSSEE---------EECCCSTTHHHHHHHHHHHHHHHH--------HHHHH------------
T ss_pred             ecCCeEEEEecccccccccCCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            9999999999999999999876         889999999999999999999998        88887            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL  345 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i  345 (629)
                       ..++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.++
T Consensus       283 -~~g~----~l----vi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~i  353 (543)
T 1a6d_B          283 -SVGA----NV----VITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKV  353 (543)
T ss_dssp             -HTTC----CE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEE
T ss_pred             -HcCC----CE----EEECCCcCHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEe
Confidence             4443    22    46799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHH
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRL  425 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~  425 (629)
                      +++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|+
T Consensus       354 g~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~  433 (543)
T 1a6d_B          354 GEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQL  433 (543)
T ss_dssp             TTEEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred             cCceEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        426 GIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       426 ~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++++|++||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|.+.|+.+.|||||+.||+++|+.|+++|..
T Consensus       434 ~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~  512 (543)
T 1a6d_B          434 AIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIM  512 (543)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHT-TCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988764 456799999999999999999999999999999999999888


Q ss_pred             CeEEe
Q psy14945        506 PRVIT  510 (629)
Q Consensus       506 ~~iV~  510 (629)
                      .+.++
T Consensus       513 iL~id  517 (543)
T 1a6d_B          513 ILRID  517 (543)
T ss_dssp             HHHEE
T ss_pred             HHHHH
Confidence            76554

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=100.00  E-value=2.5e-54  Score=484.23  Aligned_cols=365  Identities=31%  Similarity=0.454  Sum_probs=326.6

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR  178 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~  178 (629)
                      .+.... .|+.+||...  .++|+.++++|+..- +...   + .....++++|+|++++|++++||++++|++|++++.
T Consensus       153 ~l~~va-~tsl~sKi~~~~~~~i~~livdAv~~V-~~~~---~-g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~  226 (548)
T 1q3q_A          153 TLLKIA-ATSITGKNAESHKELLAKLAVEAVKQV-AEKK---D-GKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVV  226 (548)
T ss_dssp             HHHHHH-HHHSCSSTTGGGHHHHHHHHHHHHHHH-CEES---S-SSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCS
T ss_pred             HHHHHH-HHHhhccccccchHHHHHHHHHHHHHh-cccc---C-CCccccCCeEEEEEecCCCccceEEEeeEEEeccCC
Confidence            343333 4555676665  477999999999853 2100   0 001346789999999999999999999999999999


Q ss_pred             CCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhh
Q psy14945        179 HPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ  258 (629)
Q Consensus       179 ~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~  258 (629)
                      ||+||++++||||++++++|++++++.+.         ++.+++..++.+++.+|++++...        +..+.     
T Consensus       227 ~~~m~~~ien~kIll~~~~Le~~k~e~~~---------~v~i~~~~~l~~~~~~E~~~l~~~--------le~I~-----  284 (548)
T 1q3q_A          227 HPRMPKRVENAKIALINEALEVKKTETDA---------KINITSPDQLMSFLEQEEKMLKDM--------VDHIA-----  284 (548)
T ss_dssp             STTSCSEESSEEEEEECSCBSCCCCSSCC---------CEEECSHHHHHHHHHHHHHHHHHH--------HHHHH-----
T ss_pred             CCCCcceecCCEEEEEecCcCcccccCCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----
Confidence            99999999999999999999999999887         899999999999999999999998        88887     


Q ss_pred             hHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccc
Q psy14945        259 ADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAG  338 (629)
Q Consensus       259 Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~  338 (629)
                              ..++    .+    ++++++|++.+++||.+++|.+++++++++++|||++|||++++++++++++.+|+|+
T Consensus       285 --------~~g~----~l----vi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~  348 (548)
T 1q3q_A          285 --------QTGA----NV----VFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAE  348 (548)
T ss_dssp             --------HHTC----CE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEES
T ss_pred             --------HhCc----CE----EEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCce
Confidence                    3443    22    4679999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhh
Q psy14945        339 SVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNT  418 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~  418 (629)
                      .+++.+++++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.+
T Consensus       349 ~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~  428 (548)
T 1q3q_A          349 VVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQ  428 (548)
T ss_dssp             EEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCceEEEEecCCCCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhh
Q psy14945        419 VKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  498 (629)
Q Consensus       419 i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~  498 (629)
                      +++.+|+++++||+||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+.
T Consensus       429 ~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~  507 (548)
T 1q3q_A          429 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS  507 (548)
T ss_dssp             HCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHH-HCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCcceeCCCCCccchhhcCCEecHHHHHHHHHH
Confidence            88899999999999999999999999999999999999987753 34579999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEe
Q psy14945        499 WIISGLHPRVIT  510 (629)
Q Consensus       499 a~e~a~~~~iV~  510 (629)
                      |+++|...+.++
T Consensus       508 A~e~a~~iL~iD  519 (548)
T 1q3q_A          508 ASEAAIMILRID  519 (548)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999887765443

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=100.00  E-value=3.5e-54  Score=482.75  Aligned_cols=366  Identities=28%  Similarity=0.418  Sum_probs=328.3

Q ss_pred             hhHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccC
Q psy14945        100 KSVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGA  177 (629)
Q Consensus       100 ~~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~  177 (629)
                      +.+.... .|+.+||...  .++|+.++++|+..- +...   + .....++++|+|.+++|++++||++++|++|++++
T Consensus       149 ~~l~~va-~tsl~sKi~~~~~~~i~~livdAv~~v-~~~~---~-g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~  222 (545)
T 1a6d_A          149 ATLRKIA-LTALSGKNTGLSNDFLADLVVKAVNAV-AEVR---D-GKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEK  222 (545)
T ss_dssp             HHHHHHH-HHHTTTSSCCSTHHHHHHHHHHHHHHH-CEES---S-SSEECCGGGEEEEECCCSCSTTCEEESEEEESCCC
T ss_pred             HHHHHHH-HHHHhcccccccHHHHHHHHHHHHHHH-hccc---C-CCcccccceEEEEEecCCCceeeEEEeeEEEeccC
Confidence            3344443 4556677665  577999999999753 2110   0 00134678999999999999999999999999999


Q ss_pred             CCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHh
Q psy14945        178 RHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLK  257 (629)
Q Consensus       178 ~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~  257 (629)
                      .||+||++++||||++++++|++++++.+.         ++.+++..++.+++.+|++++...        +..+.    
T Consensus       223 ~~~~m~~~ien~kIll~~~~Le~~k~e~~~---------~v~i~~~~~l~~~~~~E~~~l~~~--------le~I~----  281 (545)
T 1a6d_A          223 VHSKMPDVVKNAKIALIDSALEIKKTEIEA---------KVQISDPSKIQDFLNQETNTFKQM--------VEKIK----  281 (545)
T ss_dssp             SCTTSCSEEEEEEEEEECSCBSCCCCSSCC---------EEEECSTTHHHHHHHHHHHHHHHH--------HHHHH----
T ss_pred             CCCCCcceecCCEEEEEecCCCcccccCCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH----
Confidence            999999999999999999999999999887         899999999999999999999998        88887    


Q ss_pred             hhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCccc
Q psy14945        258 QADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYA  337 (629)
Q Consensus       258 ~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~  337 (629)
                               ..++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|
T Consensus       282 ---------~~g~----~l----vi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a  344 (545)
T 1a6d_A          282 ---------KSGA----NV----VLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEA  344 (545)
T ss_dssp             ---------HTTC----CE----EEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEE
T ss_pred             ---------HhCC----CE----EEECCCccHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeeecccccCCHHHCCCc
Confidence                     3443    22    467999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        338 GSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      +.+++.+++++++++|++|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.
T Consensus       345 ~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~  424 (545)
T 1a6d_A          345 ETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYAN  424 (545)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEecCceEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhh
Q psy14945        418 TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  497 (629)
Q Consensus       418 ~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~  497 (629)
                      ++++.+|+++++|++||+.||++|++|+|+|+.+++.+|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+
T Consensus       425 ~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~  503 (545)
T 1a6d_A          425 SVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEK-GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALE  503 (545)
T ss_dssp             TSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHT-TCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCcceecccCccccchhcCccccHHHHHHHHH
Confidence            888999999999999999999999999999999999999988753 4567999999999999999999999999999999


Q ss_pred             hhhhcCCCCeEEe
Q psy14945        498 SWIISGLHPRVIT  510 (629)
Q Consensus       498 ~a~e~a~~~~iV~  510 (629)
                      .|+++|...+.++
T Consensus       504 ~A~e~a~~iL~id  516 (545)
T 1a6d_A          504 SAVEVATMILRID  516 (545)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887765554

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.1e-53  Score=476.52  Aligned_cols=352  Identities=19%  Similarity=0.251  Sum_probs=314.8

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccccCeeEEEeecc
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNIS  197 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~  197 (629)
                      .++|+.++++|+..- +.     |......++++|+|.+++||++.||++++|++|++++.| +||++++||||++++|+
T Consensus       159 ~~~i~~livdAv~~V-~~-----~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~mp~~i~n~kIlll~~~  231 (518)
T 3iyg_D          159 SSLLSPMSVDAVMKV-ID-----PATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFC  231 (518)
T ss_pred             HHHHHHHHHHHHHHh-hc-----cccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc-CCCccccCceEEEEEee
Confidence            367888888888742 21     001123467789999999999999999999999999999 99999999999999999


Q ss_pred             ccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCcc
Q psy14945        198 MEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDC  277 (629)
Q Consensus       198 Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~  277 (629)
                      |++++++.+.         ++.+++..++.+++.+|++++...        +..+.             ..+++  +++|
T Consensus       232 Le~~k~~~~~---------~i~is~~~~~~~~~~~E~~~l~~~--------le~I~-------------~~g~~--lvi~  279 (518)
T 3iyg_D          232 LSAPKTDMDN---------QIVVSDYVQMDRVLREERAYILNL--------VKQIK-------------KTGCN--VLLI  279 (518)
T ss_pred             ccccccccCc---------eEEecCHHHHHHHHHHHHHHHHHH--------HHHHH-------------hcCCC--EEEE
Confidence            9999988665         788999999999999999999998        88887             33430  1111


Q ss_pred             ccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcC-eeEEEEeec
Q psy14945        278 STSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE-EKFTFVEEC  356 (629)
Q Consensus       278 ~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~-~~~~~~~~~  356 (629)
                      . .++.+++|++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.++++ +++++|++|
T Consensus       280 ~-k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~  358 (518)
T 3iyg_D          280 Q-KSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGC  358 (518)
T ss_pred             e-ccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECC
Confidence            0 11227999999999999999999999999999999999999999999999999999999999999998 799999999


Q ss_pred             CC-CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHh
Q psy14945        357 KN-PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALL  435 (629)
Q Consensus       357 ~~-~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe  435 (629)
                      ++ +..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|+++++||+||+
T Consensus       359 ~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe  438 (518)
T 3iyg_D          359 ASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAME  438 (518)
T ss_pred             CCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            88 89999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             hhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        436 IIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       436 ~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|...+.|+
T Consensus       439 ~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD  512 (518)
T 3iyg_D          439 VIPSTLAENAGLNPISTVTELRNRHAQ-GEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKID  512 (518)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhc-cCCceeEeCCCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999998864 45679999999999999999999999999999999999998776665

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=100.00  E-value=1.2e-53  Score=479.81  Aligned_cols=364  Identities=21%  Similarity=0.244  Sum_probs=321.9

Q ss_pred             hHHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCC
Q psy14945        101 SVKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR  178 (629)
Q Consensus       101 ~~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~  178 (629)
                      .+..+. .++.+|+..+  .++|+.+++++|.. ....      ..+..++++|+|++++||++.||++++|++|++++.
T Consensus       179 ~L~~vA-~tSl~sK~i~~~~d~la~l~vdAV~~-V~~~------~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~  250 (562)
T 3p9d_E          179 FLLRAA-KTSLGSKIVSKDHDRFAEMAVEAVIN-VMDK------DRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFS  250 (562)
T ss_dssp             HHHHHH-HHHHSSSTTTTTHHHHHHHHHHHHHT-SSTT------TCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCC
T ss_pred             HHHHHH-HHhcCCchhHHHHHHHHHHHHHHhee-eccc------ccCCCCcccEEEEEecCCChhhhceeeeEEEecCCC
Confidence            344443 2444566654  56788888988873 2110      012346788999999999999999999999999999


Q ss_pred             CCCCcccc------cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHH
Q psy14945        179 HPDMPKSV------KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVI  252 (629)
Q Consensus       179 ~~~m~~~i------~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i  252 (629)
                      ||+||+++      +|+||++++|+|++++++.+.         ++.+++..++.+++.+|++++...        +..+
T Consensus       251 sp~m~~~~~~~~~~~~~kIall~~~le~~k~~~~~---------~~~Iss~~~~~~~~~~E~~~l~~~--------lekI  313 (562)
T 3p9d_E          251 HPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKH---------KLDISSVEEYQKLQTYEQDKFKEM--------IDDV  313 (562)
T ss_dssp             TTSCCC-----TTCSSCEECEEESCCSSCCCSSCC---------CCCCCSSSHHHHHHHHHHHHHHHH--------HHHH
T ss_pred             CCCcCcccccccccccceEEEecccccccccccCc---------eEEECCHHHHHHHHHHHHHHHHHH--------HHHH
Confidence            99999999      999999999999999988776         788899999999999999999998        8888


Q ss_pred             HHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcC
Q psy14945        253 GELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPA  332 (629)
Q Consensus       253 ~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~  332 (629)
                      .             ..++    .+    ++++++|++.++++|.+++|.+++++++.+++|||++|||++++++++++++
T Consensus       314 ~-------------~~g~----~v----vI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~  372 (562)
T 3p9d_E          314 K-------------KAGA----DV----VICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKD  372 (562)
T ss_dssp             H-------------HHTC----SC----CEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHHHCCCEEESSSCCCTT
T ss_pred             H-------------HcCC----cE----EEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEEeccccCCHH
Confidence            7             3343    12    4579999999999999999999999999999999999999999999999999


Q ss_pred             CCcccceEEEEEEcC--eeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        333 HLGYAGSVFEHVLGE--EKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       333 ~lG~~~~v~e~~i~~--~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                      .+|+|+.+++.++++  +++++|++|+++..|||+|||+++.+++|.+|+++||++++|++++++++|||||++|++++.
T Consensus       373 ~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~  452 (562)
T 3p9d_E          373 KLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSL  452 (562)
T ss_dssp             SCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHH
T ss_pred             HCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHH
Confidence            999999999999984  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhh
Q psy14945        411 ALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLT  490 (629)
Q Consensus       411 ~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~  490 (629)
                      +|++++.++++.+|+++++||+||+.||++|++|+|+|+.+++++|+..|...++.++|+|+.+|++.|+.+.|||||+.
T Consensus       453 ~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~  532 (562)
T 3p9d_E          453 AVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFI  532 (562)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHH
T ss_pred             HHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcHH
Confidence            99999988899999999999999999999999999999999999999887532446789999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCCeEEe
Q psy14945        491 VKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       491 Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ||+++|+.|+++|...+.++
T Consensus       533 vk~~al~~A~e~a~~iL~iD  552 (562)
T 3p9d_E          533 GKKQQILLATQLCRMILKID  552 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988765543

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=100.00  E-value=8.3e-54  Score=481.20  Aligned_cols=361  Identities=22%  Similarity=0.333  Sum_probs=315.4

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCC-CCCCC--Ccccccccc-ceeEEEecCCCccceEEEEeEEEeccCCCCCC
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGAR-HPDMP--KSVKNAHIL-TCNISMEYEKSDVCIILVKGVVLNHGARHPDM  182 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~-~~~~~--~~~~~~~~~-~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m  182 (629)
                      ++.+|+...  .++|+.++++|+..- +.. ..+..  .++ ..++. +|+|++++||++.||++++|++|++++.|+.|
T Consensus       157 tslsSK~~~~~~~~i~~livdAv~~V-~~~~~~~~~~~~~~-~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m  234 (590)
T 3p9d_C          157 ASIGTKYVIHWSEKMCELALDAVKTV-RKDLGQTVEGEPNF-EIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKM  234 (590)
T ss_dssp             TTSTTSTTGGGHHHHHHHHHHHHTTS-TTCC------------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTS
T ss_pred             HHHhcccccccHHHHHHHHHHHHHHh-cccccCcccccccc-ccchhhceEEEEecCCCcccceeeeEEEEecccCCCCC
Confidence            344555433  577899999998742 211 00000  011 11232 68999999999999999999999999999999


Q ss_pred             cccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHH
Q psy14945        183 PKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIY  262 (629)
Q Consensus       183 ~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~l  262 (629)
                      |++++||||++++|+|+|+|++.+.         ++.+++..++..++..|++++++.        |..+.         
T Consensus       235 ~~~~en~kIll~d~~Le~~K~e~~~---------~v~Is~~~~l~~il~~E~~~l~~~--------vekI~---------  288 (590)
T 3p9d_C          235 SRHIENPRVVLLDCPLEYKKGESQT---------NIEIEKEEDWNRILQIEEEQVQLM--------CEQIL---------  288 (590)
T ss_dssp             CSCEESCCEECCCCCCSCCCCTTTE---------ECCBCSTTHHHHHHHHHHHHHHHH--------HHHHH---------
T ss_pred             cceeeeeEEEEEcccccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH---------
Confidence            9999999999999999999998876         788999999999999999999999        88888         


Q ss_pred             HHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcc-cceEE
Q psy14945        263 IAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVF  341 (629)
Q Consensus       263 l~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~-~~~v~  341 (629)
                          ..++    ++    ++++++|++.+++||++++|.+++++++.+++|||++|||++++++++++++.+|+ |+.++
T Consensus       289 ----~~g~----~v----II~e~~I~d~Al~~L~k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~  356 (590)
T 3p9d_C          289 ----AVRP----TL----VITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFK  356 (590)
T ss_dssp             ----TTCC----SE----ECCSSCCCTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEE
T ss_pred             ----hcCC----cE----EEecCCcCHHHHHHHHhccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEE
Confidence                4454    33    56899999999999999999999999999999999999999999999999999999 99999


Q ss_pred             EEEEcCeeEEEEeecCCCcc--------------------------------------------------------EEEE
Q psy14945        342 EHVLGEEKFTFVEECKNPQS--------------------------------------------------------VTIL  365 (629)
Q Consensus       342 e~~i~~~~~~~~~~~~~~~~--------------------------------------------------------~TIl  365 (629)
                      +..++++++++|++|+++..                                                        |||+
T Consensus       357 ~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~  436 (590)
T 3p9d_C          357 VEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIM  436 (590)
T ss_dssp             CCEETTEECEEECC---------------------------------------------------------CCCSCCCEE
T ss_pred             EEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEE
Confidence            88999999999999987766                                                        9999


Q ss_pred             ecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhc
Q psy14945        366 LKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNS  445 (629)
Q Consensus       366 l~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~Na  445 (629)
                      |||+++.+++|.+|+++||++++|++++++.+|||||++|++++.+|++++..+++.+|+++++|++||+.||++|++|+
T Consensus       437 lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na  516 (590)
T 3p9d_C          437 LRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNA  516 (590)
T ss_dssp             EECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTT
T ss_pred             EcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        446 GFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       446 G~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      |+|+.+++++|+..|.. ++.++|+|+.+|++.||.+.|||||+.||+++|+.|+++|...+.++
T Consensus       517 G~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id  580 (590)
T 3p9d_C          517 GGDPIRLLSQLRAKHAQ-GNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVD  580 (590)
T ss_dssp             CSCHHHHHHHHHHHHTT-SCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEE
T ss_pred             CCCHHHHHHHHHHHHhc-CCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998864 55678999999999999999999999999999999999998776654

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=100.00  E-value=7.2e-54  Score=481.21  Aligned_cols=359  Identities=25%  Similarity=0.350  Sum_probs=321.9

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+||...  .++|+.++++|+..- +..+   +......+++.|+|++++|+++.||++++|++|++++.||+||+++
T Consensus       162 tsl~sK~~~~~~~~i~~livdAv~~V-~~~~---~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~i  237 (559)
T 3p9d_A          162 TSMSSKIIGADSDFFSNMVVDALLAV-KTQN---SKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRI  237 (559)
T ss_dssp             HTTSSSGGGTTHHHHHHHHHHHHHHH-CCEE---SSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEE
T ss_pred             HHhccCcccchhHHHHHHHHHHHHHh-cccc---cCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceee
Confidence            444555554  577888889888753 2100   0111234677899999999999999999999999999999999999


Q ss_pred             c--CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHH
Q psy14945        187 K--NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIA  264 (629)
Q Consensus       187 ~--n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~  264 (629)
                      +  ||||++++++|++++++.+.         ++.+++..++..++.+|++++...        +..+.           
T Consensus       238 e~~n~kIll~~~~Le~~k~e~~~---------~v~is~~~~l~~i~~~E~~~l~~~--------le~I~-----------  289 (559)
T 3p9d_A          238 AGGNVKIACLDLNLQKARMAMGV---------QINIDDPEQLEQIRKREAGIVLER--------VKKII-----------  289 (559)
T ss_dssp             CSSSBCEEEETTCCSCCCCCTTC---------CEEECSSSCHHHHHHHHHHHHHHH--------HHHHH-----------
T ss_pred             ccCCceEEEEeccccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----------
Confidence            9  99999999999999999876         899999999999999999999998        88887           


Q ss_pred             HHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccc------cccCcCCCcccc
Q psy14945        265 EVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV------EGLEPAHLGYAG  338 (629)
Q Consensus       265 ~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~------~~l~~~~lG~~~  338 (629)
                        ..++    .+    ++++++|++.+++||.+++|.+++++++.+++|||++|||++++++      ++++++.+|+|+
T Consensus       290 --~~g~----~l----vI~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~  359 (559)
T 3p9d_A          290 --DAGA----QV----VLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCD  359 (559)
T ss_dssp             --TTCC----SE----EEESSCCCGGGTHHHHHTTCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEE
T ss_pred             --hhCC----CE----EEEcCCCCHHHHHHHHHcCCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccce
Confidence              4443    22    4679999999999999999999999999999999999999999998      678889999999


Q ss_pred             eEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhh
Q psy14945        339 SVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNT  418 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~  418 (629)
                      .+++.+++++++++|++|+++..|||+|||+++.+++|.+|+++||++++|++++++++|||||++|++++.+|++++.+
T Consensus       360 ~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~  439 (559)
T 3p9d_A          360 EVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATT  439 (559)
T ss_dssp             EEEEEECSSCEEECEEEESSSCCCCEEEEESCHHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTT
T ss_pred             EEEEEEEcCceEEEEEcCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCc------------eEEEEeccCCCCCCCccccc
Q psy14945        419 VKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV------------AVGVDVNSGEVLNPTSAGIY  486 (629)
Q Consensus       419 i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~------------~~Gid~~t~~i~d~~e~~I~  486 (629)
                      +++.+|+++++||+||+.||++|++|+|+|+.+++++|+..|.+ ++.            ++|+|+.+|++.|+.+.|||
T Consensus       440 ~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~  518 (559)
T 3p9d_A          440 VGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAA-SQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVL  518 (559)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHT-TSCCC----CCCCCCCEEECTTSSSEEESTTSSCC
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-cccccccccccccccceeEECCCCcEeehhhccCE
Confidence            89999999999999999999999999999999999999998864 222            68999999999999999999


Q ss_pred             chhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        487 DNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       487 D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ||+.||+++|+.|+++|...+.++
T Consensus       519 dp~~vk~~al~~A~e~a~~iL~id  542 (559)
T 3p9d_A          519 EPTISKVKSLKSALEACVAILRID  542 (559)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHTEE
T ss_pred             ecHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999988766554

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=100.00  E-value=7.4e-55  Score=488.67  Aligned_cols=366  Identities=40%  Similarity=0.583  Sum_probs=318.8

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+|+..+  .+.|+.+++++|..-..       ......++++++|++++||+..||++++|++|++++.||+||+++
T Consensus       156 tsl~sKi~~~~~d~la~l~vdaV~~V~~-------~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~  228 (546)
T 3p9d_F          156 SSLLTKVDADLTEVLTPIVTDAVLSVYD-------AQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRV  228 (546)
T ss_dssp             HHTCSTTHHHHCSSHHHHHHHHHHHTHH-------HHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSB
T ss_pred             HHhCCCcchhHHHHHHHHHHHhheEeec-------CCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCccee
Confidence            333455443  46677777777763110       001134678899999999999999999999999999999999999


Q ss_pred             cCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhh-hHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ-ADIYIAE  265 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~-Ae~ll~~  265 (629)
                      +||||++++|+|+|++++.+.         ++.+++..++.+++.+|++++++.        +..|..++++ ++.   .
T Consensus       229 en~kIll~~~~Le~~k~e~~~---------~~~i~~~~~~~~~~~~E~~~~~~~--------v~~I~~~~~~v~~~---~  288 (546)
T 3p9d_F          229 KNAYVLILNVSLEYEKTEVNS---------GFFYSSADQRDKLAASERKFVDAK--------LKKIIDLKNEVCGM---D  288 (546)
T ss_dssp             CSCCCCEECCCSSSCCCSSCB---------CCCCCSSSCHHHHHHHHHHHHHHH--------HHHHHHCC----------
T ss_pred             cCceEEEecCcccccccccCc---------eEEEcCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhh---c
Confidence            999999999999999999886         788999999999999999999888        8888743311 000   0


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL  345 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i  345 (629)
                       .-.+    +    .++++++|++.+++||.+++|.+++++++++++|||++|||++++++++++++.+|+|+.+++..+
T Consensus       289 -~g~~----~----vIi~~k~I~~~Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~i  359 (546)
T 3p9d_F          289 -PDKG----F----VIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETI  359 (546)
T ss_dssp             ---------C----EEEESSCCCHHHHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCC
T ss_pred             -cCCc----e----EEEecCcCcHHHHHHHHHCCCeeEecCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEe
Confidence             0001    1    256799999999999999999999999999999999999999999999999999999999999899


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHh---hhhhcCcc
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN---YKNTVKGK  422 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~---~~~~i~~~  422 (629)
                      ++++++||++|+++..|||+|||+++.+++|.+|+++||++++|++++++++|||||++|++++.+|++   |+..+++.
T Consensus       360 g~~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~  439 (546)
T 3p9d_F          360 GEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGK  439 (546)
T ss_dssp             SSCCCEECSSCSCCSCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSH
T ss_pred             cCceEEEEecCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998   58888999


Q ss_pred             hHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC----CCCceEEEEeccCCCCCCCcccccchhhHHHHHhhh
Q psy14945        423 SRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE----APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  498 (629)
Q Consensus       423 ~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~----~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~  498 (629)
                      +|+++++||+||+.||++|++|+|+|+.+++++|+..|..    .++.++|+|+.+|++.|+.+.|||||+.||+++|+.
T Consensus       440 eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~  519 (546)
T 3p9d_F          440 TKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITG  519 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHH
Confidence            9999999999999999999999999999999999987751    123578999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEe
Q psy14945        499 WIISGLHPRVIT  510 (629)
Q Consensus       499 a~e~a~~~~iV~  510 (629)
                      |+++|...+.|+
T Consensus       520 A~~~a~~iL~iD  531 (546)
T 3p9d_F          520 ATGIASNLLLCD  531 (546)
T ss_dssp             HHHHHHHHHTEE
T ss_pred             HHHHHHHHHHHH
Confidence            999988776654

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=100.00  E-value=6.5e-54  Score=480.71  Aligned_cols=344  Identities=20%  Similarity=0.303  Sum_probs=315.5

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCC---CCcccccCeeEEEe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHP---DMPKSVKNAHILTC  194 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~---~m~~~i~n~kIll~  194 (629)
                      .++|+.++++|+.. .+..         ..++++++|++++|+++.||++++|++|++++.||   .||++++||||+++
T Consensus       175 ~~~i~~livdAv~~-V~~~---------~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll~  244 (550)
T 3p9d_G          175 ADFFVKMCVDAVLS-LDRN---------DLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSL  244 (550)
T ss_dssp             HHHHHHHHHHHHHH-CCSS---------SCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEEE
T ss_pred             HhHHHHHHHHHHHH-hCcc---------ccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEEe
Confidence            46788888888874 2321         23567899999999999999999999999999998   68999999999999


Q ss_pred             eccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcccccc
Q psy14945        195 NISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFA  274 (629)
Q Consensus       195 ~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l  274 (629)
                      +++|++++++.+.         ++.+++..++..++.+|++++.+.        +..|.             ..++    
T Consensus       245 ~~~Le~~k~e~~~---------~v~is~~~~l~~il~~E~~~l~~~--------v~~I~-------------~~g~----  290 (550)
T 3p9d_G          245 NVELELKAEKDNA---------EVRVEHVEDYQAIVDAEWQLIFEK--------LRQVE-------------ETGA----  290 (550)
T ss_dssp             CSCCSCCCCSSCE---------EEEECSSSHHHHHHHHHHHHHHHH--------HHHHH-------------TTTC----
T ss_pred             ccccccccccccc---------eeeeCCHHHHHHHHHHHHHHHHHH--------HHHHH-------------hcCC----
Confidence            9999999998876         789999999999999999999888        88887             4443    


Q ss_pred             CccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEe
Q psy14945        275 PDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE  354 (629)
Q Consensus       275 ~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~  354 (629)
                      .+    ++++++|++.+++||++++|.+++++++.+++||+++|||++++++++++++.+|+|+.+++.+++++++++|+
T Consensus       291 ~v----Vi~~~~I~dla~~~L~~~gI~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~  366 (550)
T 3p9d_G          291 NI----VLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQ  366 (550)
T ss_dssp             SE----EEESSCCCHHHHHTTGGGTCEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEB
T ss_pred             CE----EEECCCccHHHHHHHHHcCCccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEe
Confidence            22    46799999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             ecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHH
Q psy14945        355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEAL  434 (629)
Q Consensus       355 ~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~AL  434 (629)
                      +|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|+++++|++||
T Consensus       367 g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~AL  446 (550)
T 3p9d_G          367 GCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKAL  446 (550)
T ss_dssp             CCTTCCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHH
T ss_pred             cCCCCceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             hhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        435 LIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       435 e~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      +.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|...+.++
T Consensus       447 e~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id  521 (550)
T 3p9d_G          447 EVIPRQLCENAGFDAIEILNKLRLAHSK-GEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVD  521 (550)
T ss_dssp             THHHHHHHHTSCSCHHHHHHHHHHHHHH-SCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEE
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999988753 45678999999999999999999999999999999999888776554

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=100.00  E-value=3.2e-54  Score=481.44  Aligned_cols=356  Identities=19%  Similarity=0.206  Sum_probs=321.6

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCC-Cccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPD-MPKS  185 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~-m~~~  185 (629)
                      ++.+|+...  .++|+.++++|+..- +..      .....+++.|+|++++||++.||++++|++|++++.||+ ||++
T Consensus       156 tsl~sK~~~~~~~~i~~livdAv~~V-~~~------~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~  228 (528)
T 3p9d_D          156 TSLSSKIVSQYSSFLAPLAVDSVLKI-SDE------NSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTR  228 (528)
T ss_dssp             HHSCSSSCSTTHHHHHHHHHHHHHTT-CCT------TTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSE
T ss_pred             HHhcCCccchhHHHHHHHHHHHHHHh-ccc------cCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCccc
Confidence            444566554  577889999998742 220      112356788999999999999999999999999999999 9999


Q ss_pred             ccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        186 VKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       186 i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      ++||||++++++|++++++.+.         ++.+++..++.+++.+|++++...        +..+.            
T Consensus       229 ien~kIll~~~~le~~k~~~~~---------~i~i~~~~~~~~~~~~E~~~l~~~--------le~I~------------  279 (528)
T 3p9d_D          229 KEKAKIGLIQFQISPPKPDTEN---------NIIVNDYRQMDKILKEERAYLLNI--------CKKIK------------  279 (528)
T ss_dssp             ESSEEEEEECCCSSCCCCSSEE---------EEEESSSSHHHHHTHHHHHHHHHH--------HHHHH------------
T ss_pred             ccCceEEEEeccccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            9999999999999999998876         899999999999999999999998        88887            


Q ss_pred             HhhccccccCccccccccccCC-----CHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGI-----DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV  340 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i-----~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v  340 (629)
                       ..++    .+    ++++++|     ++.+++||.+++|.+++++++.+++|||++|||++++++++++++.+|+|+.+
T Consensus       280 -~~g~----~v----vi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v  350 (528)
T 3p9d_D          280 -KAKC----NV----LLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLV  350 (528)
T ss_dssp             -HTTC----CE----EEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCE
T ss_pred             -hcCC----CE----EEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEE
Confidence             3443    22    4579999     99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCeeEEEEeecC--C-CccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh
Q psy14945        341 FEHVLGEEKFTFVEECK--N-PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN  417 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~--~-~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~  417 (629)
                      ++.++++.++++|.+|+  + +..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.
T Consensus       351 ~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~  430 (528)
T 3p9d_D          351 EEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEAR  430 (528)
T ss_dssp             ECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCCT
T ss_pred             EEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999998  5 78999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhh
Q psy14945        418 TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  497 (629)
Q Consensus       418 ~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~  497 (629)
                      ++++.+|+++++|++||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+
T Consensus       431 ~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~  509 (528)
T 3p9d_D          431 SMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHEN-GELNDGISVRRSGTTNTYEEHILQPVLVSTSAIT  509 (528)
T ss_dssp             TSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCS-SSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCCccceecCCCCccchHhccCeecHHHHHHHHH
Confidence            888999999999999999999999999999999999999988764 4567899999999999999999999999999999


Q ss_pred             hhhhcCCCCeEEe
Q psy14945        498 SWIISGLHPRVIT  510 (629)
Q Consensus       498 ~a~e~a~~~~iV~  510 (629)
                      .|+++|...+.|+
T Consensus       510 ~A~e~a~~iL~iD  522 (528)
T 3p9d_D          510 LASECVKSILRID  522 (528)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhhh
Confidence            9999887665543

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=5.6e-52  Score=462.32  Aligned_cols=350  Identities=20%  Similarity=0.259  Sum_probs=314.6

Q ss_pred             cccccc-hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccccCee
Q psy14945        112 ISMEYE-KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAH  190 (629)
Q Consensus       112 ~s~~~~-~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~n~k  190 (629)
                      +||... .++|+.++++|+..- +..       ....++..++|.+++||++.||++++|++|++++.+  ||++++|||
T Consensus       153 ~sK~~~~~~~i~~livdAv~~V-~~~-------~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~--~~~~~~n~k  222 (512)
T 3iyg_Q          153 MSKQYGNEVFLAKLIAQACVSI-FPD-------SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAK  222 (512)
T ss_pred             CCCCccchHHHHHHHHHHHHHH-hcc-------CCcccHhHeeEeeccCCCcccceEEeeEEEecCcCC--CCcccccCc
Confidence            444433 466888888888742 211       012467789999999999999999999999999876  999999999


Q ss_pred             EEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc
Q psy14945        191 ILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM  270 (629)
Q Consensus       191 Ill~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~  270 (629)
                      |+++++||++.+++.+.         ++.+++..++..++.+|++++++.        +..+.             ..++
T Consensus       223 I~ll~~~le~~~~e~k~---------~v~Is~~~~l~~~~~~E~~~l~~~--------v~~I~-------------~~g~  272 (512)
T 3iyg_Q          223 IAVYSCPFDGMITETKG---------TVLIKSAEELMNFSKGEENLMDAQ--------VKAIA-------------DTGA  272 (512)
T ss_pred             eEEEecccccccccccc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-------------HhCC
Confidence            99999999999998876         788999999999999999999998        88887             3443


Q ss_pred             ccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeE
Q psy14945        271 HKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKF  350 (629)
Q Consensus       271 ~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~  350 (629)
                          .+    ++++++|++.+++||++++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.+++++++
T Consensus       273 ----~v----vi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~  344 (512)
T 3iyg_Q          273 ----NV----VVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQV  344 (512)
T ss_pred             ----CE----EEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCeEE
Confidence                22    3579999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecC-CCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHH
Q psy14945        351 TFVEECK-NPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQA  429 (629)
Q Consensus       351 ~~~~~~~-~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~  429 (629)
                      ++|++|+ .+..|||+|||+++.+++|.+|+++||++++|++++++++|||||++|++++.+|++++.++++.+|+++++
T Consensus       345 ~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~  424 (512)
T 3iyg_Q          345 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKK  424 (512)
T ss_pred             EEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            9999996 478999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccC--CCCCCCcccccchhhHHHHHhhhhhhcCCCCe
Q psy14945        430 YAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIINSWIISGLHPR  507 (629)
Q Consensus       430 fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~--~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~  507 (629)
                      |++||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.++  ++.|+.+.|||||+.||+++|+.|+++|...+
T Consensus       425 ~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL  503 (512)
T 3iyg_Q          425 FAEAFEAIPRALAENSGVKANEVISKLYAVHQE-GNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVL  503 (512)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998864 557899999965  99999999999999999999999999988766


Q ss_pred             EEe
Q psy14945        508 VIT  510 (629)
Q Consensus       508 iV~  510 (629)
                      .++
T Consensus       504 ~id  506 (512)
T 3iyg_Q          504 RVD  506 (512)
T ss_pred             hHh
Confidence            554

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=100.00  E-value=4.9e-53  Score=475.26  Aligned_cols=360  Identities=21%  Similarity=0.321  Sum_probs=316.3

Q ss_pred             hhhcccccc-hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCccccc
Q psy14945        109 TCNISMEYE-KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVK  187 (629)
Q Consensus       109 ~~~~s~~~~-~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i~  187 (629)
                      ++.+||... .++|+.++++|+..- +....+ .......++++|+|++++||++.||++++|++|++++.  +||++++
T Consensus       165 tsl~sK~~~~~~~i~~livdAv~~V-~~~~~~-~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~--~m~~~i~  240 (568)
T 3p9d_H          165 PVISSKKYGSEDILSELVSEAVSHV-LPVAQQ-AGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE--GHVKSLS  240 (568)
T ss_dssp             HHHTTTSTTCHHHHHHHHHHHHTTS-CC----------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS--SGGGSCC
T ss_pred             HHhhccCcchHHHHHHHHHHHHHHH-hhcccc-ccCCcccccceEEEEEccCCCcchheeeccEEEeeccc--CCcEEEe
Confidence            444455443 467888888888742 210000 00112356788999999999999999999999999974  7999999


Q ss_pred             ---CeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHH
Q psy14945        188 ---NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIA  264 (629)
Q Consensus       188 ---n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~  264 (629)
                         ||||++++|+|+|++++.+.         ++.+++..++..++.+|++++++.        +..|.           
T Consensus       241 ~~~n~kIlll~~~Le~~k~e~~~---------~v~i~~~~~l~~~~~~E~~~l~~~--------v~~I~-----------  292 (568)
T 3p9d_H          241 EDKKHKVAVFTCPLDIANTETKG---------TVLLHNAQEMLDFSKGEEKQIDAM--------MKEIA-----------  292 (568)
T ss_dssp             CCSSCEEEEECSCSSSCCCSSSC---------EEECCSHHHHHHHHHHHHHHHHHH--------HHHHH-----------
T ss_pred             cCCcceEEEEccCccccccccCc---------eEEeCCHHHHHHHHHHHHHHHHHH--------HHHHH-----------
Confidence               99999999999999998876         788999999999999999999999        88887           


Q ss_pred             HHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEE
Q psy14945        265 EVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHV  344 (629)
Q Consensus       265 ~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~  344 (629)
                        ..++    .+    ++++++|++.+++||++++|.+++++++.+++|||++|||++++++++++++.+|+|+.+++.+
T Consensus       293 --~~g~----~v----vi~~~~I~~~al~~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~  362 (568)
T 3p9d_H          293 --DMGV----EC----IVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTME  362 (568)
T ss_dssp             --HTTC----CE----EEECSCCCHHHHHHHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCE
T ss_pred             --hcCC----eE----EEECCCcChHHHHHHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEE
Confidence              4443    22    4679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCeeEEEEeecC--CCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhh--CCCcccCCChHHHHHHHHHHhhhhhcC
Q psy14945        345 LGEEKFTFVEECK--NPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTID--DGAVVPGAGAFEVAAWHALQNYKNTVK  420 (629)
Q Consensus       345 i~~~~~~~~~~~~--~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~--~~~VV~GGG~~El~l~~~L~~~~~~i~  420 (629)
                      ++++++++|++|+  ++..|||+|||+++.+++|.+|+++||++++|++++  ++.+|||||++|++++.+|++++.+++
T Consensus       363 ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~  442 (568)
T 3p9d_H          363 IGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTP  442 (568)
T ss_dssp             ETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCC
T ss_pred             ecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCC
Confidence            9999999999998  689999999999999999999999999999999999  999999999999999999999998899


Q ss_pred             cchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-------CCCceEEEEeccCC---CCCCCcccccchhh
Q psy14945        421 GKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-------APGVAVGVDVNSGE---VLNPTSAGIYDNLT  490 (629)
Q Consensus       421 ~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-------~~~~~~Gid~~t~~---i~d~~e~~I~D~~~  490 (629)
                      +.+|+++++||+||+.||++|++|+|+|+.+++++|+..|..       .++.++|+|+.+|+   +.|+.+.|||||+.
T Consensus       443 g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~  522 (568)
T 3p9d_H          443 GLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLA  522 (568)
T ss_dssp             STHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHH
Confidence            999999999999999999999999999999999999998753       13467899999997   99999999999999


Q ss_pred             HHHHHhhhhhhcCCCCeEEe
Q psy14945        491 VKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       491 Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      ||+++|+.|+++|...+.++
T Consensus       523 vk~~al~~A~e~a~~iL~iD  542 (568)
T 3p9d_H          523 TKKFAINVATEAATTVLSID  542 (568)
T ss_dssp             HHHHHHHCCEECBCCC----
T ss_pred             HHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999886

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=100.00  E-value=1.6e-52  Score=468.31  Aligned_cols=350  Identities=23%  Similarity=0.320  Sum_probs=314.6

Q ss_pred             hhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCCCCCcccc
Q psy14945        109 TCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMPKSV  186 (629)
Q Consensus       109 ~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~~m~~~i  186 (629)
                      ++.+||...  .++|+.++++|+..- |..          .+++.|+|.+++||++.||++++|++|++++.||+ |+++
T Consensus       159 tSl~sK~~~~~~~~i~~li~dAv~~V-~~~----------~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~-p~~~  226 (527)
T 3p9d_B          159 TTLSSKILSQDKDHFAELATNAILRL-KGS----------TNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRI  226 (527)
T ss_dssp             HHHTTSGGGGGHHHHHHHHHHHHHTT-CTT----------CCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC-CSCC
T ss_pred             hccccCcccchHHHHHHHHHHHHHHh-ccc----------CCcceEEEEEcCCCCccccEEEEeEEEecccCCCC-Ceee
Confidence            333444443  467888888888742 221          14677899999999999999999999999999998 9999


Q ss_pred             cCeeEEEeecccccccccc-CCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH
Q psy14945        187 KNAHILTCNISMEYEKSSQ-GGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE  265 (629)
Q Consensus       187 ~n~kIll~~~~Le~~k~~~-~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~  265 (629)
                      +||||++++|+|++++++. +.         ++.+++..++..++.+|++++.+.        +..+.            
T Consensus       227 ~n~kIlll~~~le~~k~~~~~~---------~v~i~~~~~l~~~~~~E~~~l~~~--------l~~I~------------  277 (527)
T 3p9d_B          227 ENAKILIANTTLDTDKVKIFGT---------KFKVDSTAKLAQLEKAEREKMKNK--------IAKIS------------  277 (527)
T ss_dssp             SSCEEEEECSCSSCCCCSSCCC---------BCCCCHHHHHHHHHHHHHHHHHHH--------HHHHT------------
T ss_pred             ecceEEEeccccccccccccCc---------eEEEcCHHHHHHHHHHHHHHHHHH--------HHHHH------------
Confidence            9999999999999999884 54         677888889999999999999998        88877            


Q ss_pred             HhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEE
Q psy14945        266 VNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL  345 (629)
Q Consensus       266 ~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i  345 (629)
                       ..++    .+    ++++++|++.++++|.+++|.+++++++.+++|++++|||++++++++++++.+|+|+.+++..+
T Consensus       278 -~~g~----~v----vi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~i  348 (527)
T 3p9d_B          278 -KFGI----NT----FINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIML  348 (527)
T ss_dssp             -TTCC----BE----EESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCS
T ss_pred             -hcCC----CE----EEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEe
Confidence             3443    22    46799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHH
Q psy14945        346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRL  425 (629)
Q Consensus       346 ~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~  425 (629)
                      +++++++|.+|+++..|||+|||+++.+++|.+|+++||+++++++++++++|||||++|++++.+|++++.++++.+|+
T Consensus       349 g~~~~~~~~g~~~~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~  428 (527)
T 3p9d_B          349 GEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSL  428 (527)
T ss_dssp             SSCCBCCBCSSCCSCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHH
T ss_pred             cceEEEEEECCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        426 GIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       426 ~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                      ++++|++||+.||++|++|+|+|+.+++++|+..|.. ++.++|+|+.+|++.|+.+.|||||+.||+++|+.|+++|..
T Consensus       429 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~  507 (527)
T 3p9d_B          429 AVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYN-GISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEV  507 (527)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHH-TCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CCCceeEECCCCCCcchHhccCEEcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988763 456789999999999999999999999999999999998876


Q ss_pred             CeEE
Q psy14945        506 PRVI  509 (629)
Q Consensus       506 ~~iV  509 (629)
                      .+.+
T Consensus       508 iL~i  511 (527)
T 3p9d_B          508 LLRV  511 (527)
T ss_dssp             HHHC
T ss_pred             HHhH
Confidence            5443

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=100.00  E-value=3.7e-42  Score=384.35  Aligned_cols=308  Identities=19%  Similarity=0.274  Sum_probs=258.2

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccce-EEEEeEEEeccCCCCC-------CcccccCe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCI-ILVKGVVLNHGARHPD-------MPKSVKNA  189 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS-~li~Gvv~~~~~~~~~-------m~~~i~n~  189 (629)
                      .++|+.++++++.. .+..             +.++|.  +|++++|| ++++|++|++++.||+       |+++++||
T Consensus       153 ~~~i~~li~dAv~~-V~~~-------------g~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~  216 (543)
T 1we3_A          153 DPEVGKLIADAMEK-VGKE-------------GIITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDA  216 (543)
T ss_dssp             CHHHHHHHHHHHHT-TCTT-------------SEEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEE
T ss_pred             CHHHHHHHHHHHHH-hCcC-------------CcEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCc
Confidence            35566677777753 2210             224443  89999998 9999999999999985       66779999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|++++++|+.                      ..+   ++        ..        +..+.             ..+
T Consensus       217 ~Ill~d~~Is~----------------------~~~---l~--------~~--------le~i~-------------~~g  242 (543)
T 1we3_A          217 FILIVEKKVSN----------------------VRE---LL--------PI--------LEQVA-------------QTG  242 (543)
T ss_dssp             EEEEESSCBCC----------------------HHH---HH--------HH--------HHHHH-------------TTT
T ss_pred             eEEEECCCcCC----------------------HHH---HH--------HH--------HHHHH-------------hcC
Confidence            99999997631                      111   11        12        34443             222


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHh------CcEEEe-----ccchhhHHHHHHHhCCccccc-----ccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFARE------GIIALR-----RAKRRNMERLSLACGGTAMNS-----VEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~------~I~vv~-----~v~~~dl~rIak~tGg~i~~s-----~~~l~~~~  333 (629)
                      .    .+    ++++++|++.++++|..+      +|.+++     ++++.+++|||++|||+++++     +++++.+.
T Consensus       243 ~----~l----vii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~  314 (543)
T 1we3_A          243 K----PL----LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSM  314 (543)
T ss_dssp             C----CE----EEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGG
T ss_pred             C----CE----EEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHH
Confidence            2    11    456889999999999985      557777     667789999999999999996     78899999


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCC-----------------------------------ccEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNP-----------------------------------QSVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~-----------------------------------~~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.++   ++++++++|++|+++                                   ..|||+|||+++.+++|.+
T Consensus       315 LG~a~~v~---~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~  391 (543)
T 1we3_A          315 LGRAERVR---ITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKK  391 (543)
T ss_dssp             CEEEEEEE---ECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHH
T ss_pred             CCCceEEE---EEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHH
Confidence            99999987   467899999988764                                   5799999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|++++.+..+.+|+++++|++||+.||++|++|+|+|+.+++++|+.
T Consensus       392 r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~  470 (543)
T 1we3_A          392 HRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILA  470 (543)
T ss_dssp             HHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999999999999 99999999999999999998878889999999999999999999999999999999999998


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .|.   +.++|+|..+|++.|+.+.|||||+.||+++|+.|+++|...+.++
T Consensus       471 ~h~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id  519 (543)
T 1we3_A          471 ETK---NPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTE  519 (543)
T ss_dssp             CCS---CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEE
T ss_pred             hcC---CCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            773   4678999999999999999999999999999999999888776554

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=100.00  E-value=1.3e-41  Score=379.63  Aligned_cols=344  Identities=16%  Similarity=0.183  Sum_probs=273.4

Q ss_pred             hhhhcccccccccCC----CCCCchhhHHHHhHhhhhccccc---------------chhhHHHHHHHHHhhhcCCCCCC
Q psy14945         79 QHGIREEGVVLNHGA----RHPDMPKSVKNAHILTCNISMEY---------------EKSDVCIILVKGVVLNHGARHPD  139 (629)
Q Consensus        79 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~---------------~~~~i~~~~v~~v~~~~~~~~~~  139 (629)
                      +.++++....+..+.    -.++|++++..|.......+.+.               ..++|+.++++++..- +..   
T Consensus        96 ~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~liadAv~~V-~~d---  171 (547)
T 1kp8_A           96 QAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV-GKE---  171 (547)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-CTT---
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHHHHHHHHHh-CcC---
Confidence            555665555544443    23455556666554333333332               1355666777776532 211   


Q ss_pred             CCCccccccccceeEEEecCCCccce-EEEEeEEEeccCCCCC-------CcccccCeeEEEeeccccccccccCCCccc
Q psy14945        140 MPKSVKNAHILTCNISMEYEKSDVCI-ILVKGVVLNHGARHPD-------MPKSVKNAHILTCNISMEYEKSSQGGHQPE  211 (629)
Q Consensus       140 ~~~~~~~~~~~~i~i~~i~Ggs~~dS-~li~Gvv~~~~~~~~~-------m~~~i~n~kIll~~~~Le~~k~~~~~~~~~  211 (629)
                                +.++|.  +|++++|| ++++|++|++++.||+       |+++++||+|++++++|+.           
T Consensus       172 ----------g~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~-----------  228 (547)
T 1kp8_A          172 ----------GVITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN-----------  228 (547)
T ss_dssp             ----------SEEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECC-----------
T ss_pred             ----------CcEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCC-----------
Confidence                      224443  89999999 9999999999999986       5667999999999998742           


Q ss_pred             cccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHH
Q psy14945        212 ISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQS  291 (629)
Q Consensus       212 l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~  291 (629)
                                 ..++.           ..        +..+.             ..+.    .+    ++++++|++.+
T Consensus       229 -----------~~~l~-----------~~--------le~i~-------------~~g~----~l----vIi~~~I~~~A  257 (547)
T 1kp8_A          229 -----------IREML-----------PV--------LEAVA-------------KAGK----PL----LIIAEDVEGEA  257 (547)
T ss_dssp             -----------GGGTH-----------HH--------HHHHH-------------GGGC----CE----EEEESEECHHH
T ss_pred             -----------HHHHH-----------HH--------HHHHH-------------hcCC----CE----EEECCCcCHHH
Confidence                       11211           11        34443             2232    11    35688999999


Q ss_pred             HHHHHHhC------cEEEe-----ccchhhHHHHHHHhCCccccc-----ccccCcCCCcccceEEEEEEcCeeEEEEee
Q psy14945        292 LDLFAREG------IIALR-----RAKRRNMERLSLACGGTAMNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFVEE  355 (629)
Q Consensus       292 ~~~la~~~------I~vv~-----~v~~~dl~rIak~tGg~i~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~  355 (629)
                      +++|..++      |.+++     ++++.+++|||++|||+++++     +++++.+.+|+|+.++   ++++++++|++
T Consensus       258 l~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~---~~~~~~~~i~g  334 (547)
T 1kp8_A          258 LATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVV---INKDTTTIIDG  334 (547)
T ss_dssp             HHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEE---ECSSCEEEEEE
T ss_pred             HHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEE---EccceEEEEcC
Confidence            99999964      56776     677889999999999999996     7889999999999987   46799999999


Q ss_pred             cCCC-----------------------------------ccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccC
Q psy14945        356 CKNP-----------------------------------QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG  400 (629)
Q Consensus       356 ~~~~-----------------------------------~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~G  400 (629)
                      |+++                                   ..|||+|||+++.+++|.+++++||+++++++++++ +|||
T Consensus       335 ~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpG  413 (547)
T 1kp8_A          335 VGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAG  413 (547)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEET
T ss_pred             CCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeC
Confidence            8864                                   569999999999999999999999999999999999 9999


Q ss_pred             CChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCC
Q psy14945        401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNP  480 (629)
Q Consensus       401 GG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~  480 (629)
                      ||++|++++.+|++++. ..+.+|+++++|++||+.||++|++|+|+|+.+++++|+..     +.++|+|+.+|++.|+
T Consensus       414 GGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~-----~~~~G~d~~~g~~~dm  487 (547)
T 1kp8_A          414 GGVALIRVASKLADLRG-QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG-----DGNYGYNAATEEYGNM  487 (547)
T ss_dssp             TTHHHHHHHHHTTTCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS-----CTTEEEETTTTEEEET
T ss_pred             CcHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCCEeEeCCCCccccc
Confidence            99999999999998876 77889999999999999999999999999999999999864     2468999999999999


Q ss_pred             CcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        481 TSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       481 ~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .+.|||||+.||+++|+.|+++|...+.++
T Consensus       488 ~~~gI~Dp~~vk~~al~~A~~~A~~iL~id  517 (547)
T 1kp8_A          488 IDMGILDPTKVTRSALQYAASVAGLMITTE  517 (547)
T ss_dssp             TTTTCEEEHHHHHHHHHHHHHHHHHHHTEE
T ss_pred             hhcCceechHhHHHHHHHHHHHHHHHHhHh
Confidence            999999999999999999999887765554

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=100.00  E-value=3.6e-42  Score=384.24  Aligned_cols=306  Identities=19%  Similarity=0.234  Sum_probs=236.1

Q ss_pred             hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccce-EEEEeEEEeccCCCCC-------CcccccCe
Q psy14945        118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCI-ILVKGVVLNHGARHPD-------MPKSVKNA  189 (629)
Q Consensus       118 ~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS-~li~Gvv~~~~~~~~~-------m~~~i~n~  189 (629)
                      .++|+.++++++..- +..             +.++|.  +|+++.|| ++++|++|++++.||+       |+++++||
T Consensus       155 ~~~i~~li~dAv~~V-~~~-------------g~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~  218 (545)
T 1iok_A          155 ESFIGQQIAEAMQRV-GNE-------------GVITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDA  218 (545)
T ss_dssp             CHHHHHHHHHHHHHH-CTT-------------SCCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEE
T ss_pred             chhHHHHHHHHHHHh-ccC-------------CeEEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCC
Confidence            456888888888742 221             124443  79999999 9999999999999985       66779999


Q ss_pred             eEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhc
Q psy14945        190 HILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLK  269 (629)
Q Consensus       190 kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~  269 (629)
                      +|++++++|+.    .                  .++.           ..        +..+.             ..+
T Consensus       219 ~Ill~d~~I~~----~------------------~~l~-----------~~--------le~i~-------------~~g  244 (545)
T 1iok_A          219 YILLHEKKLSS----L------------------QPMV-----------PL--------LESVI-------------QSQ  244 (545)
T ss_dssp             EEEECSSCBCC----C------------------CC-------------------------------------------C
T ss_pred             eEEEEcCCcCC----H------------------HHHH-----------HH--------HHHHH-------------hcC
Confidence            99999998742    1                  1110           11        33333             222


Q ss_pred             cccccCccccccccccCCCHHHHHHHHHh------CcEEEe-----ccchhhHHHHHHHhCCccccc-----ccccCcCC
Q psy14945        270 MHKFAPDCSTSDRYRTGIDPQSLDLFARE------GIIALR-----RAKRRNMERLSLACGGTAMNS-----VEGLEPAH  333 (629)
Q Consensus       270 ~~~~l~v~~~~~l~~k~i~~~~~~~la~~------~I~vv~-----~v~~~dl~rIak~tGg~i~~s-----~~~l~~~~  333 (629)
                      .    .+    ++++++|++.++++|..+      +|.+++     ++++.+++|||++|||+++++     +++++++.
T Consensus       245 ~----~l----vIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~  316 (545)
T 1iok_A          245 K----PL----LIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDM  316 (545)
T ss_dssp             C----CC----EEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTT
T ss_pred             C----CE----EEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHH
Confidence            2    11    356889999999999985      557776     777889999999999999997     88899999


Q ss_pred             CcccceEEEEEEcCeeEEEEeecCCC-----------------------------------ccEEEEecCCCccCHHHHH
Q psy14945        334 LGYAGSVFEHVLGEEKFTFVEECKNP-----------------------------------QSVTILLKGPNKHTLAQTK  378 (629)
Q Consensus       334 lG~~~~v~e~~i~~~~~~~~~~~~~~-----------------------------------~~~TIll~g~~~~~l~e~~  378 (629)
                      +|+|+.++   .+++++++|++|+++                                   ..|||+|||+++.+++|.+
T Consensus       317 LG~a~~v~---~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~k  393 (545)
T 1iok_A          317 LGRAKKVS---INKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERK  393 (545)
T ss_dssp             SEEEEEEE---ECSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHH
T ss_pred             cCcCcEEE---EecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHH
Confidence            99999997   467899999988764                                   5699999999999999999


Q ss_pred             HHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHH
Q psy14945        379 DAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE  458 (629)
Q Consensus       379 r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~  458 (629)
                      |+++||+++++++++++ +|||||++|++++.+|++++. .++.+|+++++|++||+.||++|++|+|+|+.+++++|+.
T Consensus       394 r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~  471 (545)
T 1iok_A          394 DRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRE  471 (545)
T ss_dssp             HHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            99999999999999999 999999999999999998876 7788999999999999999999999999999999999987


Q ss_pred             hhcCCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       459 ~~~~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .|    +.++|+|..+|++.|+.+.|||||+.||+++|+.|+++|...+.++
T Consensus       472 ~~----~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id  519 (545)
T 1iok_A          472 SS----DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTE  519 (545)
T ss_dssp             CC----STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEE
T ss_pred             hc----CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHH
Confidence            65    2468999999999999999999999999999999999888765544

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=100.00  E-value=6.3e-41  Score=373.22  Aligned_cols=344  Identities=17%  Similarity=0.216  Sum_probs=267.5

Q ss_pred             hhhhcccccccccCC----CCCCchhhHHHHhHhhhhcccccc--------------hhhHHHHHHHHHhhhcCCCCCCC
Q psy14945         79 QHGIREEGVVLNHGA----RHPDMPKSVKNAHILTCNISMEYE--------------KSDVCIILVKGVVLNHGARHPDM  140 (629)
Q Consensus        79 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~--------------~~~i~~~~v~~v~~~~~~~~~~~  140 (629)
                      +.+++++...+..+.    -.++|++++..|.......|.+.+              .+.|+.++++++.. .+..    
T Consensus        96 geLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~~~~i~~liadAv~~-V~~d----  170 (546)
T 3rtk_A           96 QALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDK-VGNE----  170 (546)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHTCHHHHHHHHHHHHH-SCTT----
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHhHeEEeCCchHHHHHHHHHHHH-hccC----
Confidence            566666666555544    123566666666643333333322              23455566666552 2210    


Q ss_pred             CCccccccccceeEEEecCCCccceEEEEeEEEeccCCCC-------CCcccccCeeEEEeeccccccccccCCCccccc
Q psy14945        141 PKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHP-------DMPKSVKNAHILTCNISMEYEKSSQGGHQPEIS  213 (629)
Q Consensus       141 ~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~~-------~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~  213 (629)
                               +.++|.+. ++...||++++|++|++++.||       .||++++||+|++++++++.    .        
T Consensus       171 ---------gvI~Ve~~-~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~----~--------  228 (546)
T 3rtk_A          171 ---------GVITVEES-NTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVST----V--------  228 (546)
T ss_dssp             ---------SEEEEECC-SSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECC----S--------
T ss_pred             ---------CceEEEec-CCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccCC----H--------
Confidence                     22444432 2455789999999999999998       46889999999999997631    1        


Q ss_pred             cccceeeeccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHH
Q psy14945        214 LAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLD  293 (629)
Q Consensus       214 ~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~  293 (629)
                                .++.           ..        +..+.             ..+.    .+    ++++++|++.+++
T Consensus       229 ----------~~l~-----------~~--------le~I~-------------~~g~----~l----vIi~~~I~~~Al~  258 (546)
T 3rtk_A          229 ----------KDLL-----------PL--------LEKVI-------------GAGK----PL----LIIAEDVEGEALS  258 (546)
T ss_dssp             ----------TTTH-----------HH--------HHHHH-------------TTTC----CE----EEEESEECHHHHH
T ss_pred             ----------HHHH-----------HH--------HHHHH-------------hcCC----CE----EEEcCCCCHHHHH
Confidence                      1211           11        33443             2222    11    3468999999999


Q ss_pred             HHHHhC------cEEEe-----ccchhhHHHHHHHhCCcccc-----cccccCcCCCcccceEEEEEEcCeeEEEEeecC
Q psy14945        294 LFAREG------IIALR-----RAKRRNMERLSLACGGTAMN-----SVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECK  357 (629)
Q Consensus       294 ~la~~~------I~vv~-----~v~~~dl~rIak~tGg~i~~-----s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~  357 (629)
                      +|..++      +.+++     +.++.+++|||++|||++++     ++++++++.+|+|+.++   ++++++++|++|+
T Consensus       259 ~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~  335 (546)
T 3rtk_A          259 TLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAG  335 (546)
T ss_dssp             HHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECS
T ss_pred             HHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCC
Confidence            999765      45554     23467999999999999999     57888999999999987   6889999999988


Q ss_pred             CCc-----------------------------------cEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCC
Q psy14945        358 NPQ-----------------------------------SVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG  402 (629)
Q Consensus       358 ~~~-----------------------------------~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG  402 (629)
                      ++.                                   .|||++||+++.+++|.+|+++||+++++++++++ +|||||
T Consensus       336 ~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGG  414 (546)
T 3rtk_A          336 DTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGG  414 (546)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTT
T ss_pred             CHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCc
Confidence            643                                   69999999999999999999999999999999999 999999


Q ss_pred             hHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCCCCCCCc
Q psy14945        403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTS  482 (629)
Q Consensus       403 ~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~i~d~~e  482 (629)
                      ++|++++.+|++++  +++.+|+++++|++||+.||++|++|+|+|+.+++++|+..+.     .+|+|+.+|++.|+.+
T Consensus       415 a~e~~~s~~L~~~~--~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~~-----~~G~d~~~g~~~Dm~~  487 (546)
T 3rtk_A          415 VTLLQAAPTLDELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPA-----GHGLNAQTGVYEDLLA  487 (546)
T ss_dssp             HHHHTTGGGSTTSC--CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHSCT-----TEECCSSSCCCEETTT
T ss_pred             HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcC-----CEeEcCCCCcEeeHHH
Confidence            99999999999887  7889999999999999999999999999999999999987421     2799999999999999


Q ss_pred             ccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        483 AGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       483 ~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      .|||||+.||+++|+.|+++|...+.++
T Consensus       488 ~gI~dp~~vk~~al~~A~e~A~~iL~id  515 (546)
T 3rtk_A          488 AGVADPVKVTRSALQNAASIAGLFLTTE  515 (546)
T ss_dssp             TTCEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCEecHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887766655

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=4.4e-40  Score=366.57  Aligned_cols=361  Identities=17%  Similarity=0.215  Sum_probs=265.3

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c-----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M-----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~-----~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .++    +     +..
T Consensus        60 v~hP~Akll~e~a~~qd~e~GDGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~  139 (515)
T 3iyg_G           60 VQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDT  139 (515)
T ss_pred             cCCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHH
Confidence            479999999999999999999999999999999999999999771                   000    0     111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccc-----h--hhH---HHHHHHhCCccccccc----ccCcCCC--ccc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-----R--RNM---ERLSLACGGTAMNSVE----GLEPAHL--GYA  337 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-----~--~dl---~rIak~tGg~i~~s~~----~l~~~~l--G~~  337 (629)
                      +.-++.+++++|.++.. .++|++.++.++..+.     .  .|+   ++|.+..|+++.+|..    .+++...  +..
T Consensus       140 l~~va~tsl~sK~i~~~-~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~  218 (515)
T 3iyg_G          140 MLNIINSSITTKVISRW-SSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMR  218 (515)
T ss_pred             HHHHHHHHhcCCchhhH-HHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCc
Confidence            22233467777777543 3444455544443332     1  133   6788889999987741    1332221  222


Q ss_pred             ceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        338 GSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                           ..+.+.++.+++ |+     .....++.+..+.+.  .+++-++.+.+.+..+... .-..|+..+|..+++++ 
T Consensus       219 -----~~ien~kIll~~-~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~-g~~vIi~~~~I~~~al~-  290 (515)
T 3iyg_G          219 -----RYIKNPRIVLLD-SSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQL-KPDVVITEKGISDLAQH-  290 (515)
T ss_pred             -----ceeeeeEEEEEc-ccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccCHHHHH-
Confidence                 235688888886 32     124678888887755  5555556666666555442 22346778888888886 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC---------------------CCC---
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE---------------------APG---  465 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~---------------------~~~---  465 (629)
                      ||.+++. .+....+..++++|++....           .+..++++...+.+                     +++   
T Consensus       291 ~L~~~~I~av~~~~k~~leria~~tGa~-----------ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~~~  359 (515)
T 3iyg_G          291 YLMRANITAIRRVRKTDNNRIARACGAR-----------IVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKA  359 (515)
T ss_pred             HHHHCCceeeccCCHHHHHHHHHHhCCe-----------eeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCCCe
Confidence            8877664 44556788888888885443           22222222222111                     011   


Q ss_pred             ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q psy14945        466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTS  545 (629)
Q Consensus       466 ~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~a  545 (629)
                      .++-+++.|...+++.+|.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++     
T Consensus       360 ~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~-------~~~ivpGGGa~e-~~~~~~L~~~~~~~~g~eq~~i~-----  426 (515)
T 3iyg_G          360 CTILLRGASKEILSEVERNLQDAMQVCRNVLL-------DPQLVPGGGASE-MAVAHALTEKSKAMTGVEQWPYR-----  426 (515)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhh-------CCcEEeCCCHHH-HHHHHHHHHHhhccCcHHHHHHH-----
Confidence            12345677889999999999999999999987       999999999999 99999999999999999999999     


Q ss_pred             hhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHH
Q psy14945        546 LRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  625 (629)
Q Consensus       546 l~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~  625 (629)
                                   +|++|||+||++||+|||+|+.+++++||+.|.+.++.++|+|+.+|++.||.+.|||||+.||+|+
T Consensus       427 -------------~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~a  493 (515)
T 3iyg_G          427 -------------AVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQT  493 (515)
T ss_pred             -------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcHHHHHHH
Confidence                         5777888899999999999999999999999976234689999999999999999999999999999


Q ss_pred             hhc
Q psy14945        626 INS  628 (629)
Q Consensus       626 i~~  628 (629)
                      |++
T Consensus       494 l~~  496 (515)
T 3iyg_G          494 YKT  496 (515)
T ss_pred             HHH
Confidence            974

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=4.2e-40  Score=366.62  Aligned_cols=363  Identities=26%  Similarity=0.320  Sum_probs=260.3

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c----cccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M----HKFA  274 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~----~~~l  274 (629)
                      ..||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    +    +..+
T Consensus        61 v~hp~akll~~~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L  140 (517)
T 3iyg_Z           61 IQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETL  140 (517)
T ss_pred             CcCHHHHHHHHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCCCHHHH
Confidence            479999999999999999999999999999999999999999772                   000    0    1112


Q ss_pred             CccccccccccCCCHHHHHHHHHhCcEEEeccc------hhhHHHHHHHhCCccccccc--c--cCcCCCcccceEEEEE
Q psy14945        275 PDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK------RRNMERLSLACGGTAMNSVE--G--LEPAHLGYAGSVFEHV  344 (629)
Q Consensus       275 ~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~------~~dl~rIak~tGg~i~~s~~--~--l~~~~lG~~~~v~e~~  344 (629)
                      ..++.+++++|.. ....++|++.++.++..+.      ..++++|.+..|++..+|..  .  ++.... +..  ...+
T Consensus       141 ~~va~tsl~sKi~-~~~~d~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~-~p~--m~~~  216 (517)
T 3iyg_Z          141 IDVARTSLRTKVH-AELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGAR-HPD--MKKR  216 (517)
T ss_pred             HHHHHHHhccccc-hhHHHHHHHHHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCC-CCC--cccc
Confidence            2234456666633 4455666665555544332      12567899999999888742  1  332211 111  1224


Q ss_pred             EcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhh-------CCC-cccCCChHHHHHH
Q psy14945        345 LGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTID-------DGA-VVPGAGAFEVAAW  409 (629)
Q Consensus       345 i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~-------~~~-VV~GGG~~El~l~  409 (629)
                      +.+.++.+++ |+     .....++.+..+.+.  ++++-++.+.+.+..+..+..       .|. |+..+|..+++++
T Consensus       217 ien~kIll~~-~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~  295 (517)
T 3iyg_Z          217 VEDAYILTCN-VSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLD  295 (517)
T ss_pred             ccCCeEEEec-ccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHH
Confidence            5678887775 32     124678888887754  223323333333333322221       233 5667899999996


Q ss_pred             HHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhh-cC-------------------CCC---
Q psy14945        410 HALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC-GE-------------------APG---  465 (629)
Q Consensus       410 ~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~-~~-------------------~~~---  465 (629)
                       ||.+++. .+....+..++++|++...           ..+..++++...+ .+                   +++   
T Consensus       296 -~L~~~gI~~v~~v~~~~leria~~tGa-----------~iv~~l~~l~~~~~LG~a~v~e~~ig~~~~~~~~g~~~~~~  363 (517)
T 3iyg_Z          296 -ALAKEGIIALRRAKRRNMERLTLACGG-----------IALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNPRS  363 (517)
T ss_pred             -HHHHCCCEEEEecCHHHHHHHHHHhCC-----------EEecchhhCcccccCCcceEEEEEEcCceEEEEeCCCCchh
Confidence             8877663 3444567788888887443           3333333332222 11                   011   


Q ss_pred             ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q psy14945        466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTS  545 (629)
Q Consensus       466 ~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~a  545 (629)
                      .++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++     
T Consensus       364 ~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~-------~~~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~-----  430 (517)
T 3iyg_Z          364 VTLLIKGPNKHTLTQIKDAIRDGLRAVKNAID-------DGCVVPGAGAVE-VAMAEALVKYKPSVKGRAQLGVQ-----  430 (517)
T ss_pred             heeeecCCcHHHHHHHHHHHHHHHHHHHHHHh-------cceEecCccHHH-HHHHHHHHHHhccCCHHHHHHHH-----
Confidence            23445677889999999999999999999997       999999999999 99999999999989999999999     


Q ss_pred             hhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHH
Q psy14945        546 LRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  625 (629)
Q Consensus       546 l~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~  625 (629)
                                   +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+
T Consensus       431 -------------~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~a  496 (517)
T 3iyg_Z          431 -------------AFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE-SGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQL  496 (517)
T ss_pred             -------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcEEEeCCCCcccchhhccCeecHHHHHHH
Confidence                         5777888899999999999999999999999976 56789999999999999999999999999999


Q ss_pred             hhc
Q psy14945        626 INS  628 (629)
Q Consensus       626 i~~  628 (629)
                      |++
T Consensus       497 l~~  499 (517)
T 3iyg_Z          497 LHS  499 (517)
T ss_pred             HHH
Confidence            975

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=6.3e-40  Score=366.45  Aligned_cols=371  Identities=19%  Similarity=0.228  Sum_probs=263.3

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH----------------------h-hc-c-----cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV----------------------N-LK-M-----HK  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~----------------------~-~~-~-----~~  272 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                      . .. +     ++
T Consensus        61 v~hP~akll~~~a~~qd~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e  140 (529)
T 3iyg_A           61 VEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRD  140 (529)
T ss_pred             cCChHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence            479999999999999999999999999999999999999999771                      0 00 0     11


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccc--------hhhH--HHHHHHhCCcccccc--cc--cCcC--CCcc
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK--------RRNM--ERLSLACGGTAMNSV--EG--LEPA--HLGY  336 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~--------~~dl--~rIak~tGg~i~~s~--~~--l~~~--~lG~  336 (629)
                      .+..++.+++++|.++. ..++|++..+.++..+.        ..++  ++|.+..|+++.+|.  +.  ++..  +-+.
T Consensus       141 ~l~~va~tsl~sK~~~~-~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m  219 (529)
T 3iyg_A          141 CLINAAKTSMSSKVIGI-NGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGM  219 (529)
T ss_pred             HHHHHHHHHhccCcccc-cHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccC
Confidence            12223345666665532 23455555555554442        1233  667888999987763  11  3222  1222


Q ss_pred             cceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHH
Q psy14945        337 AGSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAW  409 (629)
Q Consensus       337 ~~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~  409 (629)
                      ++     .+.+.++.+++ |+     .....++.+.++.+.  +.++-++.+...+..+.... -+.|+..+|..+++++
T Consensus       220 ~~-----~ien~kIlll~-~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g-~nvvi~~~~I~d~al~  292 (529)
T 3iyg_A          220 PK-----RIVNAKIACLD-FSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATG-ANVILTTGGIDDMCLK  292 (529)
T ss_pred             Cc-----ccCCceEEEec-CCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEECCCCCHHHHH
Confidence            32     35588888887 43     124678888887654  33333455555555554332 2458889999999997


Q ss_pred             HHHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-H----------HHhcCCChHHHHHHHHHhh---c-CCCC---ceEEE
Q psy14945        410 HALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-I----------AVNSGFDAQDTLVKLQEAC---G-EAPG---VAVGV  470 (629)
Q Consensus       410 ~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-L----------~~NaG~d~~~vl~~L~~~~---~-~~~~---~~~Gi  470 (629)
                       ||.+.+. .+....+..++++|++....+-. +          .+..|+.......++-...   . ++++   .++-+
T Consensus       293 -~L~~~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~l  371 (529)
T 3iyg_A          293 -YFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVIL  371 (529)
T ss_pred             -HHHHcCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEE
Confidence             7777663 45556788899998885543311 1          1112321100000000000   0 0011   12345


Q ss_pred             EeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhh
Q psy14945        471 DVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKV  550 (629)
Q Consensus       471 d~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~  550 (629)
                      ++.|...+++.+|.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++          
T Consensus       372 rG~t~~~l~E~er~l~Dal~v~r~~v~-------~~~iVpGGGa~E-~~ls~~L~~~~~~~~g~eq~~i~----------  433 (529)
T 3iyg_A          372 RGANDFMCDEMERSLHDALCVVKRVLE-------SKSVVPGGGAVE-AALSIYLENYATSMGSREQLAIA----------  433 (529)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhh-------CCeEEeCCcHHH-HHHHHHHHHHhhhcCChHHHHHH----------
Confidence            677889999999999999999999997       999999999999 99999999999999999999999          


Q ss_pred             HHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCC--------ceeeEecCCCcccccccCCccccHHHH
Q psy14945        551 ERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPG--------VAVGVDVNSGEVLNPTSAGIYDNLTVK  622 (629)
Q Consensus       551 ~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~--------~~~Gvd~~~g~i~d~~~~gI~dp~~vK  622 (629)
                              +|++|||+||++||+|||+|+.+++++||+.|.+ ++        .++|+|+.+|++.||.+.|||||+.||
T Consensus       434 --------~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk  504 (529)
T 3iyg_A          434 --------EFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNE-AQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVK  504 (529)
T ss_pred             --------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cccccccccCceeeeeCCCCCccChhhccCEecHHHH
Confidence                    5778888999999999999999999999999976 44        689999999999999999999999999


Q ss_pred             HHHhhc
Q psy14945        623 RQIINS  628 (629)
Q Consensus       623 ~~~i~~  628 (629)
                      +|+|++
T Consensus       505 ~~al~~  510 (529)
T 3iyg_A          505 VKSLKF  510 (529)
T ss_pred             HHHHHH
Confidence            999975

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=6.2e-40  Score=365.13  Aligned_cols=363  Identities=18%  Similarity=0.246  Sum_probs=265.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c-c------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M-H------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~-~------  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    + +      
T Consensus        62 v~hP~Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~  141 (515)
T 3iyg_H           62 VVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVE  141 (515)
T ss_pred             CCCHHHHHHHHHHHHhhceeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHH
Confidence            479999999999999999999999999999999999999999771                   000    0 0      


Q ss_pred             --cccCccccccccccCCCHHHHHHHHHhCcEEEeccchh---hHHHHHHHhCCcccccc--c--ccCcCCC--cccceE
Q psy14945        272 --KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR---NMERLSLACGGTAMNSV--E--GLEPAHL--GYAGSV  340 (629)
Q Consensus       272 --~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~---dl~rIak~tGg~i~~s~--~--~l~~~~l--G~~~~v  340 (629)
                        ..+..++.+++++|.++.. .++|.+..+.++..+.+.   ++++|.+..|+++.+|.  +  .+++...  +.... 
T Consensus       142 ~~~~L~~va~tsl~sK~~s~~-~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~-  219 (515)
T 3iyg_H          142 QRKLLEKCAMTALSSKLISQQ-KAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQ-  219 (515)
T ss_pred             HHHHHHHHHHHHhcCCccccc-HHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccC-
Confidence              0012233356666665432 355666666666555433   56678888898887763  1  1332221  11100 


Q ss_pred             EEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH
Q psy14945        341 FEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ  413 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~  413 (629)
                       ...+.+.++.+++ |+     .....++.+..+.+.  .+++.++.+...+..+.... -+.|+...|..+++++ ||.
T Consensus       220 -p~~~en~kIll~~-~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g-~~vvi~~~~I~dla~~-~l~  295 (515)
T 3iyg_H          220 -PKKYHNPMIALLN-VELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSG-AKVVLSKLPIGDVATQ-YFA  295 (515)
T ss_pred             -CccccccEEEEEc-ccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEECCcccHHHHH-HHH
Confidence             0135688888886 42     124678888887754  34444455566555554332 3457888899998875 887


Q ss_pred             hhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------CC---ceEE
Q psy14945        414 NYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------PG---VAVG  469 (629)
Q Consensus       414 ~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~~---~~~G  469 (629)
                      +++. .+....+..++++|++..           ...+..++.+...+.+ +                   ++   .++-
T Consensus       296 ~~gI~~v~~~~k~~leria~~tG-----------a~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~  364 (515)
T 3iyg_H          296 DRDMFCAGRVPEEDLKRTMMACG-----------GSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTII  364 (515)
T ss_pred             HcCCcccccccHHHHHHHHHHhC-----------CEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEE
Confidence            7664 444456778888887744           3333333333222222 0                   11   1233


Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                      +++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++         
T Consensus       365 lrG~t~~~l~E~kr~i~DAl~~~r~~v~-------~~~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~---------  427 (515)
T 3iyg_H          365 LRGGAEQFMEETERSLHDAIMIVRRAIK-------NDSVVAGGGAIE-MELSKYLRDYSRTIPGKQQLLIG---------  427 (515)
T ss_pred             EeCCcHHHHHHHHHHHHHHHHHHHHHhh-------CCCeecCCcHHH-HHHHHHHHHHHhcCChHHHHHHH---------
Confidence            5777889999999999999999999997       899999999999 99999999999999999999999         


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                               +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       428 ---------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~  496 (515)
T 3iyg_H          428 ---------AYAKALEIIPRQLCDNAGFDATNILNKLRARHAQ-GGMWYGVDINTEDIADNFEAFVWEPAMVRINALTA  496 (515)
T ss_pred             ---------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc-cCCCeeEeCCCCcccccHhccCEECHHHHHHHHHH
Confidence                     5777888899999999999999999999999976 56789999999999999999999999999999974

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=100.00  E-value=8.7e-40  Score=364.05  Aligned_cols=361  Identities=18%  Similarity=0.213  Sum_probs=262.9

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c-c------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M-H------  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~-~------  271 (629)
                      .+||.++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    + .      
T Consensus        63 v~hp~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~  142 (513)
T 3iyg_B           63 VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKF  142 (513)
T ss_pred             ccCHHHHHHHHHHHHhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccC
Confidence            469999999999999999999999999999999999999999771                   000    0 0      


Q ss_pred             -cccCccccccccccCCCHHHHHHHHHhCcEEEeccchh---hHHHHHHHhCCccccccc----ccCcCCCcccceEEEE
Q psy14945        272 -KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR---NMERLSLACGGTAMNSVE----GLEPAHLGYAGSVFEH  343 (629)
Q Consensus       272 -~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~---dl~rIak~tGg~i~~s~~----~l~~~~lG~~~~v~e~  343 (629)
                       +.+..++.+++++|.++. ..++|.+..+.++..+...   ++++|.+..|+++.+|..    .++......    ...
T Consensus       143 ~~~l~~va~tslssK~~~~-~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~----m~~  217 (513)
T 3iyg_B          143 RQDLMNIAGTTLSSKLLTH-HKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPK  217 (513)
T ss_pred             HHHHHHHHHhhhccccccc-chHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC----Cce
Confidence             112223334566665432 2334555555555555433   566788888998887731    133322111    223


Q ss_pred             EEcCeeEEEEeecCC----C--ccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        344 VLGEEKFTFVEECKN----P--QSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       344 ~i~~~~~~~~~~~~~----~--~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                      .+.+.++.+++ |+-    +  ...++.+..+.+.  .+++-++.+...+..+.... -+.++..+|..+++++ ||.++
T Consensus       218 ~~en~kIll~~-~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g-~~vvi~~~~I~~~al~-~L~~~  294 (513)
T 3iyg_B          218 RIENAKILIAN-TGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHG-INCFINRQLIYNYPEQ-LFGAA  294 (513)
T ss_pred             eecCceEEEEc-CCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEcCCccHHHHH-HHHHc
Confidence            46688888886 421    1  3567788777755  33444455555555554332 2457888899999996 88776


Q ss_pred             hh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-----------------C---C--ceEEEE
Q psy14945        416 KN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-----------------P---G--VAVGVD  471 (629)
Q Consensus       416 ~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-----------------~---~--~~~Gid  471 (629)
                      +. .+....+..++++|++.           |...+..++++...+.+ +                 +   .  .++-++
T Consensus       295 ~I~av~~~~~~~le~ia~~t-----------Ga~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lr  363 (513)
T 3iyg_B          295 GVMAIEHADFVGVERLALVT-----------GGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLR  363 (513)
T ss_pred             CceEEecCCHHHHHHHHHHh-----------CCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEec
Confidence            64 44445567788888774           44333333333332222 1                 1   1  123346


Q ss_pred             eccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhH
Q psy14945        472 VNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVE  551 (629)
Q Consensus       472 ~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~  551 (629)
                      +.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++           
T Consensus       364 G~t~~~l~E~kr~l~DAl~~~r~av~-------~~~iVpGGGa~e-~~~~~~L~~~~~~~~g~~q~~i~-----------  424 (513)
T 3iyg_B          364 GATQQILDEAERSLHDALCVLAQTVK-------DSRTVYGGGCSE-MLMAHAVTQLASRTPGKEAVAME-----------  424 (513)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHh-------CCcEEeCCcHHH-HHHHHHHHHHhhccCcHHHHHHH-----------
Confidence            67888999999999999999999997       899999999999 99999999999989999999999           


Q ss_pred             HHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        552 RELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       552 ~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                             +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       425 -------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~  493 (513)
T 3iyg_B          425 -------SYAKALRMLPTIIADNAGYDSADLVAQLRAAHSE-GKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLS  493 (513)
T ss_pred             -------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCceeecCCCCCccchHhccCEecHHHHHHHHHH
Confidence                   5777888899999999999999999999999987 66789999999999999999999999999999974

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=2.6e-39  Score=360.31  Aligned_cols=359  Identities=18%  Similarity=0.189  Sum_probs=258.8

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH----------------------hh-----cc---c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV----------------------NL-----KM---H  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~----------------------~~-----~~---~  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                      ..     .+   +
T Consensus        62 v~hP~Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~~  141 (512)
T 3iyg_Q           62 VQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDV  141 (512)
T ss_pred             cCCHHHHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCH
Confidence            479999999999999999999999999999999999999999771                      00     00   0


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccch----h--hHHHHHHHhCCcccccc--c--ccCcCCCcccceEE
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR----R--NMERLSLACGGTAMNSV--E--GLEPAHLGYAGSVF  341 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~----~--dl~rIak~tGg~i~~s~--~--~l~~~~lG~~~~v~  341 (629)
                      +.+.-++.+++++|..+.  .++|.+..+.++..+.+    .  +.++|.+..|+++.++.  +  .+++...+.+.   
T Consensus       142 ~~l~~va~tsl~sK~~~~--~~~i~~livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~~~~---  216 (512)
T 3iyg_Q          142 DEVSSLLHTSVMSKQYGN--EVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVT---  216 (512)
T ss_pred             HHHHHHHHHHhCCCCccc--hHHHHHHHHHHHHHHhccCCcccHhHeeEeeccCCCcccceEEeeEEEecCcCCCCc---
Confidence            111123334566654431  34455554444444321    1  45678999999987663  1  24554444333   


Q ss_pred             EEEEcCeeEEEEeecCC-----CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHh
Q psy14945        342 EHVLGEEKFTFVEECKN-----PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN  414 (629)
Q Consensus       342 e~~i~~~~~~~~~~~~~-----~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~  414 (629)
                        .+.+.++.+++ |+-     ....++++..+.+.  ..++-++.+.+.+..+.... -+.++.+++..+++++ ||.+
T Consensus       217 --~~~n~kI~ll~-~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g-~~vvi~~~~I~~la~~-~l~k  291 (512)
T 3iyg_Q          217 --SVKDAKIAVYS-CPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTG-ANVVVTGGRVADMALH-YANK  291 (512)
T ss_pred             --ccccCceEEEe-cccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEECCCccHHHHH-HHHH
Confidence              34577888776 332     24677888877654  33333444555554443332 3457888888888875 8887


Q ss_pred             hhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C--------C-------------C--ceEE
Q psy14945        415 YKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A--------P-------------G--VAVG  469 (629)
Q Consensus       415 ~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~--------~-------------~--~~~G  469 (629)
                      ++. .+....+..++++|++...           ..+..++.+...+.+ +        |             .  .++-
T Consensus       292 ~~I~av~~~~~~dle~ia~~tGa-----------~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~  360 (512)
T 3iyg_Q          292 YNIMLVRLNSKWDLRRLCKTVGA-----------TALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIV  360 (512)
T ss_pred             CCeEEEEeCCHHHHHHHHHHhCC-----------EEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEE
Confidence            663 3444456778888877443           333223322222222 0        0             1  1233


Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                      +++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++         
T Consensus       361 lrG~te~~l~E~kr~i~DAl~~~r~a~~-------~~~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~---------  423 (512)
T 3iyg_Q          361 LRGSTDNLMDDIERAVDDGVNTFKVLTR-------DKRLVPGGGATE-IELAKQITSYGETCPGLEQYAIK---------  423 (512)
T ss_pred             ECCCcHHHHHHHHHHHHHHHHHHHHHHh-------CCCEecCCcHHH-HHHHHHHHHHhccCCcHHHHHHH---------
Confidence            5667888999999999999999999997       999999999999 99999999999989999999999         


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCC--cccccccCCccccHHHHHHHhh
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g--~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                               +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|  ++.||.+.|||||+.||+|+|+
T Consensus       424 ---------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~  493 (512)
T 3iyg_Q          424 ---------KFAEAFEAIPRALAENSGVKANEVISKLYAVHQE-GNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIK  493 (512)
T ss_pred             ---------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHH
Confidence                     4777788899999999999999999999999986 677899999965  9999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       494 ~  494 (512)
T 3iyg_Q          494 L  494 (512)
T ss_pred             H
Confidence            4

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=3.6e-39  Score=359.44  Aligned_cols=361  Identities=17%  Similarity=0.160  Sum_probs=263.6

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c-------c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M-------H  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~-------~  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    +       +
T Consensus        61 ~~hP~Akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~  140 (515)
T 3iyg_E           61 VDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNT  140 (515)
T ss_pred             cCCHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCccCH
Confidence            479999999999999999999999999999999999999999771                   000    0       0


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccch-------hhHHHHHHHhCCccccccc----ccCcCCC--cccc
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------RNMERLSLACGGTAMNSVE----GLEPAHL--GYAG  338 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~dl~rIak~tGg~i~~s~~----~l~~~~l--G~~~  338 (629)
                      +.+.-++.+++++|.++. ..++|++.++.++..+..       .++++|.+..|+++.+|..    .+++...  +.++
T Consensus       141 ~~l~~vA~tsl~sK~i~~-~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~  219 (515)
T 3iyg_E          141 EPLIQTAKTTLGSKVVNS-CHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPK  219 (515)
T ss_pred             HHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccc
Confidence            112223345667776653 456666666666554421       2567888889999887731    1332221  1222


Q ss_pred             eEEEEEEcCeeEEEEeecCCC-----ccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECKNP-----QSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~~~-----~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                           .+.+.++++++ |+-.     ..+++.+.++.+.  +.++-++.+...+..+.... -+.++...|..+.+++ |
T Consensus       220 -----~~~~~kIall~-~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g-~~vvi~~~~I~~~al~-~  291 (515)
T 3iyg_E          220 -----QVEDAKIAILT-CPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETG-ANLAVCQWGFDDEANH-L  291 (515)
T ss_pred             -----cCCCceEEEEc-CccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeCCCCHHHHH-H
Confidence                 23467887776 4321     2377888887754  33444455555555554332 2467888899999996 7


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C---------------------CC---
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A---------------------PG---  465 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~---------------------~~---  465 (629)
                      |.+++. .+....+..++++|++...           ..+..++++...+.+ +                     ++   
T Consensus       292 L~~~~I~~v~~v~k~~le~ia~~tGa-----------~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~  360 (515)
T 3iyg_E          292 LLQNDLPAVRWVGGPEIELIAIATGG-----------RIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRA  360 (515)
T ss_pred             HHHCCCEEEeccCHHHHHHHHHHhCC-----------EEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCCce
Confidence            776654 3344567788888887443           333223333222221 0                     11   


Q ss_pred             ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q psy14945        466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTS  545 (629)
Q Consensus       466 ~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~a  545 (629)
                      .++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++     
T Consensus       361 ~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~-------~~~iVpGGGa~e-~~~~~~L~~~~~~~~g~~q~~i~-----  427 (515)
T 3iyg_E          361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIR-------DNRVVYGGGAAE-ISCALAVSQEADKCPTLEQYAMR-----  427 (515)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHh-------cCCcCCCCcHHH-HHHHHHHHHHhccCCcHHHHHHH-----
Confidence            12335677888999999999999999999997       999999999999 99999999999999999999999     


Q ss_pred             hhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHH
Q psy14945        546 LRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI  625 (629)
Q Consensus       546 l~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~  625 (629)
                                   +|++|||+||++||+|||+|+.+++++||+.|.+.++.++|+|+.+|++.||.+.|||||+.||+|+
T Consensus       428 -------------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~a  494 (515)
T 3iyg_E          428 -------------AFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQ  494 (515)
T ss_pred             -------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcHHHHHHH
Confidence                         4777888899999999999999999999999975345789999999999999999999999999999


Q ss_pred             hhc
Q psy14945        626 INS  628 (629)
Q Consensus       626 i~~  628 (629)
                      |++
T Consensus       495 l~~  497 (515)
T 3iyg_E          495 ISL  497 (515)
T ss_pred             HHH
Confidence            974

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=9.5e-39  Score=356.07  Aligned_cols=360  Identities=18%  Similarity=0.191  Sum_probs=258.8

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-------c--cccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-------K--MHKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-------~--~~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+       .  .++.
T Consensus        62 v~hP~akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~  141 (518)
T 3iyg_D           62 VLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRET  141 (518)
T ss_pred             cchHHHHHHHHHHHHhhhhhCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCChHH
Confidence            479999999999999999999999999999999999999999771                   00       0  0111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccch------h--hHHHHHHHhCCcccccc--cc--cCcCCC-cccceE
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR------R--NMERLSLACGGTAMNSV--EG--LEPAHL-GYAGSV  340 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~------~--dl~rIak~tGg~i~~s~--~~--l~~~~l-G~~~~v  340 (629)
                      +..++.+++++|.++.. .++|.+..+.++..+..      .  ++++|.+..|+++.++.  +.  +++... +...  
T Consensus       142 l~~vA~tsl~sK~~~~~-~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~~mp~--  218 (518)
T 3iyg_D          142 LLNSAATSLNSKVVSQY-SSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGIT--  218 (518)
T ss_pred             HHHHhHhhhccccchhh-HHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEecccccCCCc--
Confidence            22344456666655432 44555555555544431      1  34567777898887763  11  333322 3333  


Q ss_pred             EEEEEcCeeEEEEeecC--C---CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCccc-----CCChHHHHH
Q psy14945        341 FEHVLGEEKFTFVEECK--N---PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVP-----GAGAFEVAA  408 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~--~---~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~-----GGG~~El~l  408 (629)
                         .+.+.++.+++ |+  .   ....++.+..+.+.  ++++-++.+...+..+.... -+.++.     .+|..++++
T Consensus       219 ---~i~n~kIlll~-~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g-~~lvi~~k~i~~~~I~~~Al  293 (518)
T 3iyg_D          219 ---RVEKAKIGLIQ-FCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTG-CNVLLIQKSILRDALSDLAL  293 (518)
T ss_pred             ---cccCceEEEEE-eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeccccccCcCHHHH
Confidence               24578887776 32  1   14567788777643  33333445555555443332 245667     889999999


Q ss_pred             HHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C---------------------C-
Q psy14945        409 WHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A---------------------P-  464 (629)
Q Consensus       409 ~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~---------------------~-  464 (629)
                      + ||.+++. .+....+..++++|++....           .+..++++...+.| +                     . 
T Consensus       294 ~-~L~~~~I~av~~~~~~~le~ia~~tGa~-----------ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~  361 (518)
T 3iyg_D          294 H-FLNKMKIMVVKDIEREDIEFICKTIGTK-----------PVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASP  361 (518)
T ss_pred             H-HHHHcCcEEEecCCHHHHHHHHHHhCCE-----------EecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCC
Confidence            7 7777653 34445667788888875433           22222222222111 0                     0 


Q ss_pred             C--ceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q psy14945        465 G--VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVA  542 (629)
Q Consensus       465 ~--~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~  542 (629)
                      .  .++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++  
T Consensus       362 ~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~-------~~~iVpGGGa~e-~~~~~~L~~~~~~~~g~~q~~i~--  431 (518)
T 3iyg_D          362 GKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVK-------KRALIAGGGAPE-IELALRLTEYSRTLSGMESYCIR--  431 (518)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHh-------CCCEeecCcHHH-HHHHHHHHHHhhcCChHHHHHHH--
Confidence            1  12334666788999999999999999999997       999999999999 99999999999999999999999  


Q ss_pred             HHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHH
Q psy14945        543 RTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVK  622 (629)
Q Consensus       543 ~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK  622 (629)
                                      +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||
T Consensus       432 ----------------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk  494 (518)
T 3iyg_D          432 ----------------AFADAMEVIPSTLAENAGLNPISTVTELRNRHAQ-GEKTTGINVRKGGISNILEELVVQPLLVS  494 (518)
T ss_pred             ----------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-cCCceeEeCCCCcccchhhccCEEcHHHH
Confidence                            5777888899999999999999999999999987 56789999999999999999999999999


Q ss_pred             HHHhhc
Q psy14945        623 RQIINS  628 (629)
Q Consensus       623 ~~~i~~  628 (629)
                      +|+|++
T Consensus       495 ~~al~~  500 (518)
T 3iyg_D          495 VSALTL  500 (518)
T ss_pred             HHHHHH
Confidence            999974

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=100.00  E-value=4.9e-39  Score=361.10  Aligned_cols=366  Identities=17%  Similarity=0.138  Sum_probs=265.7

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c---c----
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M---H----  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~---~----  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    +   +    
T Consensus        96 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~  175 (562)
T 3p9d_E           96 LDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDEL  175 (562)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSS
T ss_pred             CCCHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchh
Confidence            479999999999999999999999999999999999999999761                   000    0   0    


Q ss_pred             --cccCccccccccccCCCHHHHHHHHHhCcEEEeccch-------hhHHHHHHHhCCcccccc--c--ccCcCCC--cc
Q psy14945        272 --KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------RNMERLSLACGGTAMNSV--E--GLEPAHL--GY  336 (629)
Q Consensus       272 --~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~dl~rIak~tGg~i~~s~--~--~l~~~~l--G~  336 (629)
                        +.+..++.+++++|.++. ..++|++.++.++..+..       .++++|.+..|+++.+|.  +  .+++...  +.
T Consensus       176 ~~e~L~~vA~tSl~sK~i~~-~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m  254 (562)
T 3p9d_E          176 FRDFLLRAAKTSLGSKIVSK-DHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQM  254 (562)
T ss_dssp             CHHHHHHHHHHHHSSSTTTT-THHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSC
T ss_pred             hHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCc
Confidence              112224445677776654 456666666666555432       146778888899988873  1  1333322  33


Q ss_pred             cceEEEE-EEcCeeEEEEeecCCC-----ccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHH
Q psy14945        337 AGSVFEH-VLGEEKFTFVEECKNP-----QSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAA  408 (629)
Q Consensus       337 ~~~v~e~-~i~~~~~~~~~~~~~~-----~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l  408 (629)
                      ++.+... ...+.++++++ |+-.     ..+++.+.++.++  +.++-++.+...+..+..... +.|+...|..+.++
T Consensus       255 ~~~~~~~~~~~~~kIall~-~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~-~vvI~~~~I~~~Al  332 (562)
T 3p9d_E          255 PKCVLPKEGSDGVKLAILT-CPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGA-DVVICQWGFDDEAN  332 (562)
T ss_dssp             CC-----TTCSSCEECEEE-SCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTC-SCCEECSSCCSHHH
T ss_pred             CcccccccccccceEEEec-ccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHH
Confidence            3332100 00478888887 4321     3466888888764  344444556666665554433 46888999999999


Q ss_pred             HHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C---------------------C-
Q psy14945        409 WHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A---------------------P-  464 (629)
Q Consensus       409 ~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~---------------------~-  464 (629)
                      + ||.+++. .+....+..++++|++.           |...+..++++...+.| +                     + 
T Consensus       333 ~-~L~~~~I~~v~~v~k~~le~ia~~T-----------Ga~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~  400 (562)
T 3p9d_E          333 H-LLLQNDLPAVRWVGGQELEHIAIST-----------NGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKE  400 (562)
T ss_dssp             H-HHHTTTCCCEECCCTTTHHHHHHHH-----------CCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSC
T ss_pred             H-HHHHCCCEEEeccCHHHHHHHHHHh-----------CCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCC
Confidence            6 8877664 33334566778877774           44333323222221111 0                     1 


Q ss_pred             --CceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q psy14945        465 --GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVA  542 (629)
Q Consensus       465 --~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~  542 (629)
                        ..++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++  
T Consensus       401 ~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~-------~g~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~--  470 (562)
T 3p9d_E          401 TKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVK-------DSRVVYGGGAAE-VTMSLAVSEEADKQRGIDQYAFR--  470 (562)
T ss_dssp             CSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHH-------SCCEEETTTHHH-HHHHHHHHHHHHTTCTTHHHHHH--
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHh-------CCCcCCCCcHHH-HHHHHHHHHHhccCccHHHHHHH--
Confidence              123446778899999999999999999999998       999999999999 99999999999999999999999  


Q ss_pred             HHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHH
Q psy14945        543 RTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVK  622 (629)
Q Consensus       543 ~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK  622 (629)
                                      +|++|||+||++||+|||+|+.+++++||+.|.+.++.++|+|+.+|++.||.+.|||||+.||
T Consensus       471 ----------------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk  534 (562)
T 3p9d_E          471 ----------------GFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGK  534 (562)
T ss_dssp             ----------------HHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcHHHH
Confidence                            4677788899999999999999999999999976345789999999999999999999999999


Q ss_pred             HHHhhc
Q psy14945        623 RQIINS  628 (629)
Q Consensus       623 ~~~i~~  628 (629)
                      +|+|++
T Consensus       535 ~~al~~  540 (562)
T 3p9d_E          535 KQQILL  540 (562)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999974

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=100.00  E-value=5.1e-39  Score=360.16  Aligned_cols=360  Identities=16%  Similarity=0.211  Sum_probs=264.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c--------
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M--------  270 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~--------  270 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    +        
T Consensus        75 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~  154 (550)
T 3p9d_G           75 VVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSG  154 (550)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC----
T ss_pred             CCCHHHHHHHHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchh
Confidence            469999999999999999999999999999999999999999771                   000    0        


Q ss_pred             ccccCccccccccccCCCHHHHHHHHHhCcEEEeccc-h---hhHHHHHHHhCCccccccc----ccCcCC-----Cccc
Q psy14945        271 HKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK-R---RNMERLSLACGGTAMNSVE----GLEPAH-----LGYA  337 (629)
Q Consensus       271 ~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~-~---~dl~rIak~tGg~i~~s~~----~l~~~~-----lG~~  337 (629)
                      ++.+..++.+++++|.++.. .++|++..+.++..+. +   .++++|.++.|+++.+|..    .+++..     .+..
T Consensus       155 ~~~L~~vA~tsl~sK~~~~~-~~~i~~livdAv~~V~~~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~  233 (550)
T 3p9d_G          155 RELLERCARTAMSSKLIHNN-ADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQP  233 (550)
T ss_dssp             --CHHHHHHHHHHHTTTGGG-HHHHHHHHHHHHHHCCSSSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSC
T ss_pred             HHHHHHHHHHhccCcccccc-HhHHHHHHHHHHHHhCccccCchheeEEEecCCCccceeEEeeEEEeccccccccccCc
Confidence            11122233455666665432 4556666666655554 2   1456777888999888731    133222     2333


Q ss_pred             ceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        338 GSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                      ++     +.+.++++++ |+     .....++.+..+.+.  .++.-++.+.+.+..+.... -+.|+...|..+++++ 
T Consensus       234 ~~-----~en~kIll~~-~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g-~~vVi~~~~I~dla~~-  305 (550)
T 3p9d_G          234 KK-----FNNPKILSLN-VELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETG-ANIVLSKLPIGDLATQ-  305 (550)
T ss_dssp             SC-----CSSCCEEEEC-SCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTT-CSEEEESSCCCHHHHH-
T ss_pred             cc-----ccCceEEEec-cccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEECCCccHHHHH-
Confidence            33     5688888886 43     125688889888855  34444455555555443222 2457888888888885 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C--------CC--------------c
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A--------PG--------------V  466 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~--------~~--------------~  466 (629)
                      ||.+.+. .+....+..++++|++           +|...+..++++...+.+ +        +.              .
T Consensus       306 ~L~~~gI~~v~~v~k~~lerIa~~-----------tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~  374 (550)
T 3p9d_G          306 FFADRNIFCAGRVSADDMNRVIQA-----------VGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTC  374 (550)
T ss_dssp             TTGGGTCEEEECCCTTHHHHHHHH-----------TCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCC
T ss_pred             HHHHcCCccccCcCHHHHHHHHHH-----------hCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCCcee
Confidence            8877664 3444456677777777           555444444444433333 1        00              1


Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++      
T Consensus       375 tI~lrG~te~~l~E~kr~l~DAl~~~r~av~-------~g~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~------  440 (550)
T 3p9d_G          375 TLLLRGGAEQVIAEVERSLHDAIMIVKRALQ-------NKLIVAGGGATE-MEVSKCLRDYSKTIAGKQQMIIN------  440 (550)
T ss_dssp             CCCBCSSSHHHHHHHHHHHHHHHHHHHHHHH-------SCCEEETTTHHH-HHHHHHHHHHHHTCCSTTHHHHH------
T ss_pred             EEEEeCCcHHHHHHHHHHHHhHHHHHHHHHh-------cCCcccCCCHHH-HHHHHHHHHHhhcCChHHHHHHH------
Confidence            1224566778899999999999999999998       999999999999 99999999999999999999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|
T Consensus       441 ------------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al  507 (550)
T 3p9d_G          441 ------------AFAKALEVIPRQLCENAGFDAIEILNKLRLAHSK-GEKWYGVVFETENIGDNFAKFVWEPALVKINAL  507 (550)
T ss_dssp             ------------HHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHH-SCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCceeeeCCCCcccchHhccCEecHHHHHHHH
Confidence                        4677778899999999999999999999999976 567899999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       508 ~~  509 (550)
T 3p9d_G          508 NS  509 (550)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=100.00  E-value=1.4e-38  Score=356.33  Aligned_cols=361  Identities=17%  Similarity=0.266  Sum_probs=259.3

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH------hhcc----------------------ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV------NLKM----------------------HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~------~~~~----------------------~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+      ..++                      ++.
T Consensus        70 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~  149 (543)
T 3ruv_A           70 VEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEI  149 (543)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHH
T ss_pred             CcCHHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHH
Confidence            469999999999999999999999999999999999999999761      0000                      011


Q ss_pred             cCccccccccccCC---CHHHHHHHHHhCcEEEeccchh--hHHHHHHHhCCcccccc--c--ccCcCCC--cccceEEE
Q psy14945        274 APDCSTSDRYRTGI---DPQSLDLFAREGIIALRRAKRR--NMERLSLACGGTAMNSV--E--GLEPAHL--GYAGSVFE  342 (629)
Q Consensus       274 l~v~~~~~l~~k~i---~~~~~~~la~~~I~vv~~v~~~--dl~rIak~tGg~i~~s~--~--~l~~~~l--G~~~~v~e  342 (629)
                      +..++.+++++|.+   ++...++.+++...+-+.-...  ++++|.+..|+++.+|.  +  .+++...  +...    
T Consensus       150 L~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~----  225 (543)
T 3ruv_A          150 LTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPK----  225 (543)
T ss_dssp             HHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCS----
T ss_pred             HHHHHHHHhcccccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCccccc----
Confidence            11233345555544   2333444444433222210111  23556677788876663  1  1333221  2232    


Q ss_pred             EEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhh
Q psy14945        343 HVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY  415 (629)
Q Consensus       343 ~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~  415 (629)
                       .+.+.++.+++ |+     ....+++.+..+.+.  .+++.++.+...+..+.... -+.|+..++..+.+++ ||.++
T Consensus       226 -~~~n~kIll~~-~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g-~~vvi~~~~I~~~al~-~L~~~  301 (543)
T 3ruv_A          226 -KVTDAKIALLN-CAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASG-ANVLFCQKGIDDLAQH-YLAKE  301 (543)
T ss_dssp             -EEEEEEEEEES-SCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHT-CSEEEESSCBCHHHHH-HHHHT
T ss_pred             -cccCcEEEEEc-ccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeCCccHHHHH-HHHHc
Confidence             24578888886 32     124678889888854  44444555666655554433 2458889999999986 77776


Q ss_pred             hh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------CC---ceEEEE
Q psy14945        416 KN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------PG---VAVGVD  471 (629)
Q Consensus       416 ~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~~---~~~Gid  471 (629)
                      +. .+....+..++++|++           +|...+..++++...+.+ +                   ++   .++-++
T Consensus       302 gI~~v~~v~k~~le~ia~~-----------tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~TI~lr  370 (543)
T 3ruv_A          302 GIVAARRVKKSDMEKLAKA-----------TGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIR  370 (543)
T ss_dssp             TCEEECSCCHHHHHHHHHH-----------HCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSCSSEEEEEE
T ss_pred             CcEEEeeCCHHHHHHHHHH-----------hCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCCceeEEEec
Confidence            63 4555678888888888           444444334433333222 0                   11   123456


Q ss_pred             eccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhH
Q psy14945        472 VNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVE  551 (629)
Q Consensus       472 ~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~  551 (629)
                      +.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++           
T Consensus       371 G~te~~l~E~kr~l~DAl~~~r~av~-------~g~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~-----------  431 (543)
T 3ruv_A          371 GTTEHVIEEVARAVDDAVGVVGCTIE-------DGRIVSGGGSTE-VELSMKLREYAEGISGREQLAVR-----------  431 (543)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHHH-------HCEEEETTTHHH-HHHHHHHHHHHHTCCTTHHHHHH-----------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHh-------cCCeecCCcHHH-HHHHHHHHHHhhcCChHHHHHHH-----------
Confidence            77888999999999999999999998       899999999999 99999999999999999999999           


Q ss_pred             HHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhh-cCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        552 RELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACG-EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       552 ~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~-~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                             +|++|||+||++||+|||+|+.+++++||+.|. + ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       432 -------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~  501 (543)
T 3ruv_A          432 -------AFADALEVIPRTLAENAGLDAIEILVKVRAAHASN-GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS  501 (543)
T ss_dssp             -------HHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTT-CCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc-CCceeeeeCCCCccccHHHcCCEecHHHHHHHHHH
Confidence                   467778889999999999999999999999997 4 56789999999999999999999999999999974

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=100.00  E-value=1.3e-38  Score=356.98  Aligned_cols=360  Identities=19%  Similarity=0.294  Sum_probs=268.9

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~----~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+     ..    ++.
T Consensus        74 v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~  153 (548)
T 1q3q_A           74 LQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEET  153 (548)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHH
T ss_pred             ccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            479999999999999999999999999999999999999999871                   00     00    111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccchh---------hHHHHHHHhCCccccccc----ccCcCCC--cccc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR---------NMERLSLACGGTAMNSVE----GLEPAHL--GYAG  338 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~---------dl~rIak~tGg~i~~s~~----~l~~~~l--G~~~  338 (629)
                      +..++.+++++|..+. ..++|++..+.++..+...         ++++|.+..|+++.+|..    .+++...  +..+
T Consensus       154 l~~va~tsl~sKi~~~-~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~  232 (548)
T 1q3q_A          154 LLKIAATSITGKNAES-HKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPK  232 (548)
T ss_dssp             HHHHHHHHSCSSTTGG-GHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCS
T ss_pred             HHHHHHHHhhcccccc-chHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcc
Confidence            2224446777765542 3445555555555444321         366777778999887731    1333222  3333


Q ss_pred             eEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                           ++.+.++.+++ |+     .....++.+..+.+.  .+++-++.+...+..+.... -+.|+..+|..+.+++ |
T Consensus       233 -----~ien~kIll~~-~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g-~~lvi~~~~I~~~al~-~  304 (548)
T 1q3q_A          233 -----RVENAKIALIN-EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTG-ANVVFVQKGIDDLAQH-Y  304 (548)
T ss_dssp             -----EESSEEEEEEC-SCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEESSCBCHHHHH-H
T ss_pred             -----eecCCEEEEEe-cCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhC-cCEEEEcCCcCHHHHH-H
Confidence                 35688998887 33     225678888887764  44444455666666664443 3568899999999997 7


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------C---Cce
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------P---GVA  467 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~---~~~  467 (629)
                      |.+++. .+....+..++++|++           +|...+..++.+...+.+ +                   +   ..+
T Consensus       305 L~~~~I~av~~~~k~~le~ia~~-----------tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~T  373 (548)
T 1q3q_A          305 LAKYGIMAVRRVKKSDMEKLAKA-----------TGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVT  373 (548)
T ss_dssp             HHHTTCEEECSCCHHHHHHHHHH-----------HCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSCSSEE
T ss_pred             HHHCCcEEEccCCHHHHHHHHHH-----------hCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCCeEE
Confidence            776664 4556678889998888           455444444444333332 0                   0   123


Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++       
T Consensus       374 I~lrG~te~~l~E~er~l~DAl~~~r~a~~-------~~~ivpGGGa~e-~~~~~~L~~~~~~~~g~~q~~i~-------  438 (548)
T 1q3q_A          374 ILIRGGTEHVIDEVERALEDAVKVVKDVME-------DGAVLPAGGAPE-IELAIRLDEYAKQVGGKEALAIE-------  438 (548)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHHHHH-------SCEEEECTTHHH-HHHHHHHHHHHHHHCHHHHHHHH-------
T ss_pred             EEECCCChHHHHHHHHHHHHHHHHHHHHHH-------CCCcccCCcHHH-HHHHHHHHHHhhhcCCcHHHHHH-------
Confidence            446777889999999999999999999998       999999999999 99999999999888999999998       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                 +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|+
T Consensus       439 -----------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~  506 (548)
T 1q3q_A          439 -----------NFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIK  506 (548)
T ss_dssp             -----------HHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHH-HCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCcceeCCCCCccchhhcCCEecHHHHHHHHH
Confidence                       4777788899999999999999999999999975 5568999999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       507 ~  507 (548)
T 1q3q_A          507 S  507 (548)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=100.00  E-value=1.7e-38  Score=357.08  Aligned_cols=371  Identities=16%  Similarity=0.216  Sum_probs=266.6

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHH-HHHH-------------------hh----cc-----cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIY-IAEV-------------------NL----KM-----HK  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~l-l~~~-------------------~~----~~-----~~  272 (629)
                      ..||+++|+++.++.|++++|||||||+.++++||++|+.| |+.+                   .+    .+     ++
T Consensus        70 ~~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e  149 (590)
T 3p9d_C           70 VAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDA  149 (590)
T ss_dssp             CCCHHHHTHHHHTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCTH
T ss_pred             CCCHHHHHHHHHHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCCHH
Confidence            47999999999999999999999999999999999999999 7551                   00    00     11


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccchh----------------hHHHHHHHhCCccccccc--c--cCcC
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR----------------NMERLSLACGGTAMNSVE--G--LEPA  332 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~----------------dl~rIak~tGg~i~~s~~--~--l~~~  332 (629)
                      .+.-++.+++++|.++. ..++|++..+.++..+...                ++++|.+..|+++.+|..  .  +++.
T Consensus       150 ~L~~vA~tslsSK~~~~-~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~  228 (590)
T 3p9d_C          150 AMKKLIQASIGTKYVIH-WSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKD  228 (590)
T ss_dssp             HHHHHHTTTSTTSTTGG-GHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCC
T ss_pred             HHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecc
Confidence            12234445777776542 2445555555555554321                145778888999887731  1  3322


Q ss_pred             CC--cccceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCCh
Q psy14945        333 HL--GYAGSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA  403 (629)
Q Consensus       333 ~l--G~~~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~  403 (629)
                      ..  +....     +.+.++++++ |+     .....++.+..+.++  .++..++.+.+.+..+... .-..|+...|.
T Consensus       229 ~~~~~m~~~-----~en~kIll~d-~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~-g~~vII~e~~I  301 (590)
T 3p9d_C          229 VVHPKMSRH-----IENPRVVLLD-CPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAV-RPTLVITEKGV  301 (590)
T ss_dssp             CSCTTSCSC-----EESCCEECCC-CCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTT-CCSEECCSSCC
T ss_pred             cCCCCCcce-----eeeeEEEEEc-ccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEecCCc
Confidence            11  22332     4588888886 42     235788889888764  5555556666666555443 22346777789


Q ss_pred             HHHHHHHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-----HHHhcCC-Ch-HH----------HH------------
Q psy14945        404 FEVAAWHALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-----IAVNSGF-DA-QD----------TL------------  453 (629)
Q Consensus       404 ~El~l~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~-d~-~~----------vl------------  453 (629)
                      .+++++ ||.+++. .+....+..++.+|.+....+-.     -.+..|. .. ++          .+            
T Consensus       302 ~d~Al~-~L~k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~  380 (590)
T 3p9d_C          302 SDLAQH-YLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGW  380 (590)
T ss_dssp             CTHHHH-HHHHTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC----------
T ss_pred             CHHHHH-HHHhccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccc
Confidence            999986 7877664 45556788899999886544311     1122343 11 00          00            


Q ss_pred             ---------------------------HHHHHhhcC------------C-CCceEEEEeccCCCCCCCcccccchhhHHH
Q psy14945        454 ---------------------------VKLQEACGE------------A-PGVAVGVDVNSGEVLNPTSAGIYDNLTVKR  493 (629)
Q Consensus       454 ---------------------------~~L~~~~~~------------~-~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~  493 (629)
                                                 .+++.....            + |-.++-+++.|...+++.++.++|++++.+
T Consensus       381 ~~~~~~~~~~k~~~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r  460 (590)
T 3p9d_C          381 SHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVAR  460 (590)
T ss_dssp             -----------------------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence                                       000000000            0 113455678899999999999999999999


Q ss_pred             HHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHH
Q psy14945        494 QIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATV  573 (629)
Q Consensus       494 ~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~  573 (629)
                      ++++       ++++|||||++| ++++..|++++.+.++++|++++                  +|++|||+||++||+
T Consensus       461 ~av~-------~~~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~------------------~~a~ALe~ip~~La~  514 (590)
T 3p9d_C          461 NVML-------SPSLSPGGGATE-MAVSVKLAEKAKQLEGIQQWPYQ------------------AVADAMECIPRTLIQ  514 (590)
T ss_dssp             HHHH-------CCCEECTTTHHH-HHHHHHHHHHHHHSCSTTHHHHH------------------HHHHHTTHHHHHHHH
T ss_pred             HHHh-------cCCEEeCccHHH-HHHHHHHHHHhhcCChHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence            9998       999999999999 99999999999999999999999                  466777889999999


Q ss_pred             hcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       574 NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      |||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       515 NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~  568 (590)
T 3p9d_C          515 NAGGDPIRLLSQLRAKHAQ-GNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKT  568 (590)
T ss_dssp             TTCSCHHHHHHHHHHHHTT-SCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHhc-CCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHH
Confidence            9999999999999999976 66789999999999999999999999999999974

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=100.00  E-value=6e-39  Score=356.24  Aligned_cols=362  Identities=18%  Similarity=0.252  Sum_probs=233.1

Q ss_pred             eccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc----cc
Q psy14945        221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM----HK  272 (629)
Q Consensus       221 ~~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~----~~  272 (629)
                      ..+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+     ..    ++
T Consensus        23 ~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~  102 (500)
T 3aq1_B           23 DIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEA  102 (500)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHH
T ss_pred             cCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHH
Confidence            3579999999999999999999999999999999999999999771                   00     00    11


Q ss_pred             ccCccccccccccCCC---HHHHHHHHHhCcEEEecc-ch-----hhHHHHHHHhCCccccccc----ccCcCC--Cccc
Q psy14945        273 FAPDCSTSDRYRTGID---PQSLDLFAREGIIALRRA-KR-----RNMERLSLACGGTAMNSVE----GLEPAH--LGYA  337 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~---~~~~~~la~~~I~vv~~v-~~-----~dl~rIak~tGg~i~~s~~----~l~~~~--lG~~  337 (629)
                      .+..++.+++++|..+   +...++.+++...+-+.. ..     .++++|.+..|+++.+|..    .+++..  -+..
T Consensus       103 ~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~  182 (500)
T 3aq1_B          103 ALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMP  182 (500)
T ss_dssp             HHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSC
T ss_pred             HHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCCCccceEEEeeeEEeecCCCCCCc
Confidence            1223444677776554   334444444443333220 11     2445777778999876631    133322  2333


Q ss_pred             ceEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHH
Q psy14945        338 GSVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWH  410 (629)
Q Consensus       338 ~~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~  410 (629)
                      ..     +.+.++.+++ |+     ....+++.+..+.+.  .+++-++.+...+..+... .-+.|+..+|..+.+++ 
T Consensus       183 ~~-----i~n~kIll~~-~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~-g~~lvi~~~~I~~~al~-  254 (500)
T 3aq1_B          183 EK-----VENAKILLLS-CPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS-GANVVFCQKGIDDMAQY-  254 (500)
T ss_dssp             SE-----EEEEEEEEES-SCBCC-------------------------CHHHHHHHHHHTT-CCSEEEESSCBCHHHHH-
T ss_pred             cc-----ccCCEEEEEe-CCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHh-CcCEEEECCCcCHHHHH-
Confidence            32     4578888886 33     124677888887754  3344344455555444332 23468899999999996 


Q ss_pred             HHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------C---Cc
Q psy14945        411 ALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------P---GV  466 (629)
Q Consensus       411 ~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~---~~  466 (629)
                      ||.+++. .+....+..++++|++           +|...+..++.+...+.+ +                   +   ..
T Consensus       255 ~L~~~~I~av~~~~k~~le~ia~~-----------tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~  323 (500)
T 3aq1_B          255 YIEKAGIYAVRRVKKSDLKRLSKV-----------TGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNSKAV  323 (500)
T ss_dssp             HHHHTTCEEECSCCHHHHHHHHHH-----------HCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTCCCE
T ss_pred             HHHHCCEEEEEeCCHHHHHHHHHH-----------hCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCCCCceE
Confidence            7777664 4566678899998888           444444333333222222 0                   0   12


Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++      
T Consensus       324 TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~-------~~~iVpGGGa~e-~~~~~~L~~~~~~~~g~~q~~i~------  389 (500)
T 3aq1_B          324 TVLLHGGTEHVVDSLDHALNDALHVVGVVIE-------DGKVVVGGGSSE-VELSLRLSEYASTLKGREQLAVS------  389 (500)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHHHHHHHH-------HSEEEETTTHHH-HHHHHHHHHHHHTCCSHHHHHHH------
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCCCcHHH-HHHHHHHHHHhhhcCchHHHHHH------
Confidence            3345777889999999999999999999998       999999999999 99999999999889999999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|
T Consensus       390 ------------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al  456 (500)
T 3aq1_B          390 ------------KFAEALEVIPVALAENAGLDPIDIMVELRSQHEK-GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAI  456 (500)
T ss_dssp             ------------HHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHT-TCTTEEECTTTCCEEETTTTTCEEEHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCeeEeCCCCCccchHhcCCCCCHHHHHHHH
Confidence                        4777788899999999999999999999999976 567899999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       457 ~~  458 (500)
T 3aq1_B          457 NA  458 (500)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=100.00  E-value=1.7e-38  Score=355.84  Aligned_cols=360  Identities=20%  Similarity=0.257  Sum_probs=268.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh----cc---ccccC
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL----KM---HKFAP  275 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~----~~---~~~l~  275 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+    .+   ++.+.
T Consensus        73 v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~~~~~~~l~  152 (545)
T 1a6d_A           73 VEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLR  152 (545)
T ss_dssp             CCSHHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEECCCHHHHH
T ss_pred             ccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            479999999999999999999999999999999999999999882                   00    00   01122


Q ss_pred             ccccccccccCCCHHHHHHHHHhCcEEEeccchh---------hHHHHHHHhCCccccccc----ccCcCCC--cccceE
Q psy14945        276 DCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR---------NMERLSLACGGTAMNSVE----GLEPAHL--GYAGSV  340 (629)
Q Consensus       276 v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~---------dl~rIak~tGg~i~~s~~----~l~~~~l--G~~~~v  340 (629)
                      .++.+++++|..+. ..++|.+..+.++..+...         ++++|.+..|+++.+|..    .+++...  +.... 
T Consensus       153 ~va~tsl~sKi~~~-~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~-  230 (545)
T 1a6d_A          153 KIALTALSGKNTGL-SNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDV-  230 (545)
T ss_dssp             HHHHHHTTTSSCCS-THHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSE-
T ss_pred             HHHHHHHhcccccc-cHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcce-
Confidence            23345666665432 2344444444444444221         466777788999887731    1333322  33333 


Q ss_pred             EEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH
Q psy14945        341 FEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ  413 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~  413 (629)
                          +.+.++.+++ |+     .....++.+..+.+.  .+++-++.+...+..+.... -+.|+..++..+.+++ ||.
T Consensus       231 ----ien~kIll~~-~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g-~~lvi~~~~I~~~al~-~L~  303 (545)
T 1a6d_A          231 ----VKNAKIALID-SALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSG-ANVVLCQKGIDDVAQH-YLA  303 (545)
T ss_dssp             ----EEEEEEEEEC-SCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEESSCBCHHHHH-HHH
T ss_pred             ----ecCCEEEEEe-cCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEECCCccHHHHH-HHH
Confidence                4578888886 33     225789999998865  44554555666666554433 3568899999999997 776


Q ss_pred             hhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------C---CceEE
Q psy14945        414 NYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------P---GVAVG  469 (629)
Q Consensus       414 ~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~---~~~~G  469 (629)
                      +++. .+....+..++++|++           +|...+..++.+...+.+ +                   +   ..++-
T Consensus       304 ~~~I~av~~~~k~~le~ia~~-----------tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~  372 (545)
T 1a6d_A          304 KEGIYAVRRVKKSDMEKLAKA-----------TGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSIL  372 (545)
T ss_dssp             HHTCEEECSCCHHHHHHHHHH-----------HCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCSSCEEEE
T ss_pred             HCCeeEeccCCHHHHHHHHHH-----------hCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEE
Confidence            6664 4566678889998888           455444444444333332 0                   0   11233


Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                      +++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++         
T Consensus       373 lrG~te~~l~E~kr~l~DAl~~~r~a~~-------~g~iVpGGGa~e-~~~~~~L~~~~~~~~g~~q~~i~---------  435 (545)
T 1a6d_A          373 IRGGTDHVVSEVERALNDAIRVVAITKE-------DGKFLWGGGAVE-AELAMRLAKYANSVGGREQLAIE---------  435 (545)
T ss_dssp             ECCSSSTTHHHHHHHHHHHHHHHHHHHH-------HCEEEETTTHHH-HHHHHHHHHHHHTSCHHHHHHHH---------
T ss_pred             EcCCCHHHHHHHHHHHHHHHHHHHHHHh-------CCCEEeCcCHHH-HHHHHHHHHHhhccCccHHHHHH---------
Confidence            5677889999999999999999999998       999999999999 99999999999889999999999         


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                               +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       436 ---------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~  504 (545)
T 1a6d_A          436 ---------AFAKALEIIPRTLAENAGIDPINTLIKLKADDEK-GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALES  504 (545)
T ss_dssp             ---------HHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHT-TCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCcceecccCccccchhcCccccHHHHHHHHHH
Confidence                     4677788899999999999999999999999976 56789999999999999999999999999999974

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=100.00  E-value=4e-39  Score=360.89  Aligned_cols=360  Identities=18%  Similarity=0.265  Sum_probs=259.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c-----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M-----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~-----~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    +     +..
T Consensus        81 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~  160 (553)
T 3ko1_A           81 LQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDL  160 (553)
T ss_dssp             CCSHHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHH
T ss_pred             ccChhHHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHH
Confidence            479999999999999999999999999999999999999999772                   000    0     111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccch-------h--hHHHHHHHhCCcccccc--c--ccCcCCC--cccc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------R--NMERLSLACGGTAMNSV--E--GLEPAHL--GYAG  338 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~--dl~rIak~tGg~i~~s~--~--~l~~~~l--G~~~  338 (629)
                      +..++.+++++|.++. ..++|++..+.++..+..       .  ++++|.+..|+++.+|.  +  .+++...  +...
T Consensus       161 L~~vA~tsl~sK~~~~-~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~  239 (553)
T 3ko1_A          161 LRKIAMTSLSSKAVAG-AREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPK  239 (553)
T ss_dssp             HHHHHHHHHTTSSCCT-THHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCS
T ss_pred             HHHHHHHHhhHHhhhh-HHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCcc
Confidence            2223335666665533 234444444444443321       1  33556777888877663  1  1332221  2222


Q ss_pred             eEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                           .+.+.++.+++ |+     .....++.+..+.+.  .+++-++.+...+..+.... -+.|+..+|..+++++ |
T Consensus       240 -----~ien~kIll~d-~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g-~~vvI~~~~I~~~al~-~  311 (553)
T 3ko1_A          240 -----RLENAKIALID-ASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATG-ANVIICQKGIDEVAQS-Y  311 (553)
T ss_dssp             -----CCBSCEEEEEC-SCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-CSEEECSSCBCSHHHH-H
T ss_pred             -----ccccceEEEec-CcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEeccChHHHHHH-H
Confidence                 24588888886 32     123566777776643  33444455555555443332 2457889999999986 7


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------CC---ce
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------PG---VA  467 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~~---~~  467 (629)
                      |.+++. .+....+..++++|++           +|...+..++++...+.+ +                   ++   .+
T Consensus       312 L~~~gI~~v~~v~k~~leria~~-----------tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~T  380 (553)
T 3ko1_A          312 LAKKGVLAVRRAKKSDLEKLARA-----------TGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSIS  380 (553)
T ss_dssp             HHHHTCEEECCCCHHHHHHHHTT-----------TTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSSSCEE
T ss_pred             HHhcchhhhhhhhhhhHHHHHHh-----------hCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCCceEE
Confidence            777663 4555678888888877           455444434433322222 1                   11   12


Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++       
T Consensus       381 I~lrG~te~~l~E~er~l~DAl~~~r~av~-------~g~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~-------  445 (553)
T 3ko1_A          381 ILIRGGLERLVDETERALRDALGTVADVIK-------DGRAIAGGGAVE-IEIAKKLRKYAPQVGGKEQLAVE-------  445 (553)
T ss_dssp             EEECCSSTTHHHHHHHHHHHHHHHHHHHHH-------HCEEEETTTHHH-HHHHHHHHHHHHHHCSHHHHHHH-------
T ss_pred             EeeeccHHHHHHHHHHHHHHHHHHHHHHhh-------cCceecCCceeE-eHHHHHHHHhccccCChhHhHHH-------
Confidence            345677889999999999999999999998       999999999999 99999999999889999999999       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCC-ceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPG-VAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~-~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                 +|++|||+||++||+|||+|+.+++++||+.|.+ ++ .++|+|+.+|++.||.+.|||||+.||+|+|
T Consensus       446 -----------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al  513 (553)
T 3ko1_A          446 -----------AYANALESLVSILIENAGFDPIDLLMKLRSTHEN-ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAI  513 (553)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCS-GGGTTEEEETTTTEEEESGGGSCEEETTHHHHHH
T ss_pred             -----------HHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhC-cCCceEeEEeecCCchHHHHhCccchhhhhhhhh
Confidence                       4777788899999999999999999999999976 44 6899999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       514 ~~  515 (553)
T 3ko1_A          514 KA  515 (553)
T ss_dssp             HH
T ss_pred             hh
Confidence            74

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=100.00  E-value=1.7e-38  Score=355.85  Aligned_cols=360  Identities=19%  Similarity=0.275  Sum_probs=266.2

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~----~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.|++.+                   .+     ..    ++.
T Consensus        72 v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~  151 (543)
T 1a6d_B           72 VEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKAL  151 (543)
T ss_dssp             CCSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHH
T ss_pred             ccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            479999999999999999999999999999999999999999872                   00     00    111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccch-------h--hHHHHHHHhCCccccccc----ccCcCCC--cccc
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------R--NMERLSLACGGTAMNSVE----GLEPAHL--GYAG  338 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~--dl~rIak~tGg~i~~s~~----~l~~~~l--G~~~  338 (629)
                      +..++.+++++|..+. ..++|++..+.++..+..       .  ++++|.+..|+++.+|..    .+++...  +..+
T Consensus       152 l~~va~tsl~sKi~~~-~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~  230 (543)
T 1a6d_B          152 LLKMAQTSLNSKSASV-AKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPD  230 (543)
T ss_dssp             HHHHHHHHHTTSGGGG-GHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCS
T ss_pred             HHHHHHHHhccccccc-cHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcc
Confidence            2223335666664432 233444444444433321       1  346677778999887731    1333322  3343


Q ss_pred             eEEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHH
Q psy14945        339 SVFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA  411 (629)
Q Consensus       339 ~v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~  411 (629)
                      .     +.+.++.+++ |+     .....++.+..+.+.  ++++-++.+...+..+.... -+.|+..+|..+.+++ |
T Consensus       231 ~-----ien~kIll~~-~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g-~~lvi~~~~I~~~al~-~  302 (543)
T 1a6d_B          231 V-----VKDAKIALLD-APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVG-ANVVITQKGIDDMAQH-Y  302 (543)
T ss_dssp             E-----EEEEEEEEES-SCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEESSCBCHHHHH-H
T ss_pred             e-----ecCCeEEEEe-cccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEECCCcCHHHHH-H
Confidence            3     4578888886 33     225788999988865  44554556666666554433 3468899999999997 7


Q ss_pred             HHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------C---Cce
Q psy14945        412 LQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------P---GVA  467 (629)
Q Consensus       412 L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------~---~~~  467 (629)
                      |.+++. .+....+..++++|++           +|...+..++.+...+.+ +                   +   ..+
T Consensus       303 L~~~~I~av~~v~k~~le~ia~~-----------tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~T  371 (543)
T 1a6d_B          303 LSRAGIYAVRRVKKSDMDKLAKA-----------TGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVS  371 (543)
T ss_dssp             HHHTTCEEECSCCHHHHHHHHHH-----------HTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSSSCEE
T ss_pred             HHHCCeeEeccCCHHHHHHHHHH-----------hCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEE
Confidence            777664 5566678899998888           455444444444333332 0                   0   123


Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++       
T Consensus       372 I~lrG~t~~~l~E~er~l~DAl~~~r~a~~-------~~~ivpGGGa~e-~~~s~~L~~~~~~~~g~~q~~i~-------  436 (543)
T 1a6d_B          372 ILVRGETEHVVDEMERSITDSLHVVASALE-------DGAYAAGGGATA-AEIAFRLRSYAQKIGGRQQLAIE-------  436 (543)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHHHHHH-------HCEEEETTTHHH-HHHHHHHHHHHHHTCSSHHHHHH-------
T ss_pred             EEecCCCHHHHHHHHHHHHHHHHHHHHHHH-------CCCccCCccHHH-HHHHHHHHHHhhhcCChHHHHHH-------
Confidence            345777888999999999999999999998       999999999999 99999999999889999999999       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                 +|++||++||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|+
T Consensus       437 -----------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~-~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~  504 (543)
T 1a6d_B          437 -----------KFADAIEEIPRALAENAGLDPIDILLKLRAEHAK-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIE  504 (543)
T ss_dssp             -----------HHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHT-TCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCeeEeCCCCcccchhhcCceecHHHHHHHHH
Confidence                       4677788899999999999999999999999976 5678999999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       505 ~  505 (543)
T 1a6d_B          505 S  505 (543)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=100.00  E-value=8e-39  Score=359.82  Aligned_cols=376  Identities=17%  Similarity=0.192  Sum_probs=263.4

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc-----c------c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK-----M------H  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~-----~------~  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++     .      +
T Consensus        77 v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~~  156 (568)
T 3p9d_H           77 IVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDK  156 (568)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCTT
T ss_pred             cCCHHHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCH
Confidence            479999999999999999999999999999999999999999872                   000     0      1


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccch----------h--hHHHHHHHhCCcccccc--c--ccCcCCCc
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR----------R--NMERLSLACGGTAMNSV--E--GLEPAHLG  335 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~----------~--dl~rIak~tGg~i~~s~--~--~l~~~~lG  335 (629)
                      +.+.-++.+++++|.++..  ++|.+..+.++..+..          .  ++++|.+..|+++.+|.  +  .+++...+
T Consensus       157 ~~l~~va~tsl~sK~~~~~--~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~  234 (568)
T 3p9d_H          157 NELLKMIKPVISSKKYGSE--DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEG  234 (568)
T ss_dssp             HHHHHHHHHHHTTTSTTCH--HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSS
T ss_pred             HHHHHHHHHHhhccCcchH--HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccC
Confidence            1111233356666654432  4555555555444422          1  25667778899998873  1  24444444


Q ss_pred             ccceEEEEEEcCeeEEEEeecC----C-CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHH
Q psy14945        336 YAGSVFEHVLGEEKFTFVEECK----N-PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAA  408 (629)
Q Consensus       336 ~~~~v~e~~i~~~~~~~~~~~~----~-~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l  408 (629)
                      ....++  ..++.++++++ |+    . ....++.+..+.+.  ++++.++.+...+..+.... -+.|+..+|..++++
T Consensus       235 m~~~i~--~~~n~kIlll~-~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g-~~vvi~~~~I~~~al  310 (568)
T 3p9d_H          235 HVKSLS--EDKKHKVAVFT-CPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMG-VECIVAGAGVGELAL  310 (568)
T ss_dssp             GGGSCC--CCSSCEEEEEC-SCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSCCCHHHH
T ss_pred             CcEEEe--cCCcceEEEEc-cCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEECCCcChHHH
Confidence            443322  01288888886 33    1 14678888877755  33444455666655554332 345888999999999


Q ss_pred             HHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHH-----HHHhcCCChHHHHHHHHHh---hc-CCC-----CceEEEEec
Q psy14945        409 WHALQNYKN-TVKGKSRLGIQAYAEALLIIPKT-----IAVNSGFDAQDTLVKLQEA---CG-EAP-----GVAVGVDVN  473 (629)
Q Consensus       409 ~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~-----L~~NaG~d~~~vl~~L~~~---~~-~~~-----~~~~Gid~~  473 (629)
                      + ||.+++. .+....+..++++|++....+-.     -.+..|+.......++-..   .. +++     ..++-+++.
T Consensus       311 ~-~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~  389 (568)
T 3p9d_H          311 H-YLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGA  389 (568)
T ss_dssp             H-HHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEES
T ss_pred             H-HHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCC
Confidence            7 7877664 44555688899998885443211     0111222100000000000   00 001     124556788


Q ss_pred             cCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHH
Q psy14945        474 SGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERE  553 (629)
Q Consensus       474 t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~  553 (629)
                      |...+++.++.++|++++.+++++.     .++++|||||++| ++++..|++++.+.++++|++++             
T Consensus       390 t~~~l~E~er~i~DAL~vvr~av~~-----~d~~iVpGGGa~E-~~ls~~L~~~a~~~~g~eq~~i~-------------  450 (568)
T 3p9d_H          390 TQNNLDDIERAIDDGVAAVKGLMKP-----SGGKLLPGAGATE-IELISRITKYGERTPGLLQLAIK-------------  450 (568)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTST-----TCCCCCCTTTHHH-HHHHHHHHHHHHTCCSTHHHHHH-------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcc-----cCCeEEeCCcHHH-HHHHHHHHHHhccCCcHHHHHHH-------------
Confidence            8899999999999999999988721     1699999999999 99999999999999999999999             


Q ss_pred             HHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhc-------CCCceeeEecCCCc---ccccccCCccccHHHHH
Q psy14945        554 LADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGE-------APGVAVGVDVNSGE---VLNPTSAGIYDNLTVKR  623 (629)
Q Consensus       554 ~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~-------~~~~~~Gvd~~~g~---i~d~~~~gI~dp~~vK~  623 (629)
                           +|++|||+||++||+|||+|+.+++++||+.|.+       +++.++|||+.+|+   +.||.+.|||||+.||+
T Consensus       451 -----~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~  525 (568)
T 3p9d_H          451 -----QFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKK  525 (568)
T ss_dssp             -----HHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHH
Confidence                 5778888999999999999999999999999954       13568999999997   99999999999999999


Q ss_pred             HHhhc
Q psy14945        624 QIINS  628 (629)
Q Consensus       624 ~~i~~  628 (629)
                      |+|++
T Consensus       526 ~al~~  530 (568)
T 3p9d_H          526 FAINV  530 (568)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            99985

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=100.00  E-value=2.5e-38  Score=353.17  Aligned_cols=371  Identities=17%  Similarity=0.195  Sum_probs=263.9

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hhc----c-----ccc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NLK----M-----HKF  273 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~~----~-----~~~  273 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .++    +     ++.
T Consensus        70 v~hP~akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~e~  149 (528)
T 3p9d_D           70 ILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQ  149 (528)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCHHH
T ss_pred             cCCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHH
Confidence            479999999999999999999999999999999999999999761                   000    0     111


Q ss_pred             cCccccccccccCCCHHHHHHHHHhCcEEEeccch-------hhHHHHHHHhCCcccccc--c--ccCcCCC---cccce
Q psy14945        274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------RNMERLSLACGGTAMNSV--E--GLEPAHL---GYAGS  339 (629)
Q Consensus       274 l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~dl~rIak~tGg~i~~s~--~--~l~~~~l---G~~~~  339 (629)
                      +..++.+++++|.++. ..++|++..+.++..+..       .+.++|.+..|+++.+|.  +  .+++...   +... 
T Consensus       150 l~~va~tsl~sK~~~~-~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~-  227 (528)
T 3p9d_D          150 LVRAASTSLSSKIVSQ-YSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPT-  227 (528)
T ss_dssp             HHHHHHHHSCSSSCST-THHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCS-
T ss_pred             HHHHHHHHhcCCccch-hHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcc-
Confidence            2223345677776642 234455555555544432       145678888899988763  1  1333221   1222 


Q ss_pred             EEEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCCh-----HHHH
Q psy14945        340 VFEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA-----FEVA  407 (629)
Q Consensus       340 v~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~-----~El~  407 (629)
                          .+.+.++.+++ |+     .....++.+..+.++  .+++-++.+...+..+.... -+.++..+|.     .+++
T Consensus       228 ----~ien~kIll~~-~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g-~~vvi~~~~I~~~a~~~~a  301 (528)
T 3p9d_D          228 ----RKEKAKIGLIQ-FQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAK-CNVLLIQKSILRDAVNDLA  301 (528)
T ss_dssp             ----EESSEEEEEEC-CCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTT-CCEEEESSCSCTTSCSCHH
T ss_pred             ----cccCceEEEEe-ccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeCCcccccCCHHH
Confidence                35688988887 33     124789999988854  34444455666655554332 3567888899     9999


Q ss_pred             HHHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHH-----HHhcCCCh-HHHH-------HHHHHhh--cCCCCceEEEE
Q psy14945        408 AWHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTI-----AVNSGFDA-QDTL-------VKLQEAC--GEAPGVAVGVD  471 (629)
Q Consensus       408 l~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L-----~~NaG~d~-~~vl-------~~L~~~~--~~~~~~~~Gid  471 (629)
                      ++ ||.+.+. .+....+..++++|++....+-.-     .+..|... +...       ..++...  ...+..++-++
T Consensus       302 l~-~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lr  380 (528)
T 3p9d_D          302 LH-FLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIR  380 (528)
T ss_dssp             HH-HHTTTSCCEEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECC
T ss_pred             HH-HHHHcCcEEEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEc
Confidence            96 7776653 444556788899888855433110     11112100 0000       0000000  00011234456


Q ss_pred             eccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhH
Q psy14945        472 VNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVE  551 (629)
Q Consensus       472 ~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~  551 (629)
                      +.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++           
T Consensus       381 G~te~~l~E~kr~i~DAl~~~r~av~-------~~~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~-----------  441 (528)
T 3p9d_D          381 GANNMIIDETERSLHDALCVIRCLVK-------ERGLIAGGGAPE-IEISRRLSKEARSMEGVQAFIWQ-----------  441 (528)
T ss_dssp             CSSTTHHHHHHHHHTTTHHHHHHHHH-------SSCEEETTTHHH-HHHHHHHHHCCTTSCHHHHTTHH-----------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHh-------cCCccCCCCHHH-HHHHHHHHHHhhccChHHHHHHH-----------
Confidence            77889999999999999999999998       999999999999 99999999999889999999999           


Q ss_pred             HHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        552 RELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       552 ~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                             +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       442 -------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~  510 (528)
T 3p9d_D          442 -------EFASALEVIPTTLAENAGLNSIKVVTELRSKHEN-GELNDGISVRRSGTTNTYEEHILQPVLVSTSAITL  510 (528)
T ss_dssp             -------HHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCS-SSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCCccceecCCCCccchHhccCeecHHHHHHHHHH
Confidence                   4677778899999999999999999999999976 66789999999999999999999999999999974

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=100.00  E-value=1.1e-37  Score=350.06  Aligned_cols=360  Identities=17%  Similarity=0.210  Sum_probs=260.8

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH----------------------h-hc-c-----cc
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV----------------------N-LK-M-----HK  272 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~----------------------~-~~-~-----~~  272 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                      . .. +     ++
T Consensus        75 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e  154 (559)
T 3p9d_A           75 VQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKE  154 (559)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CT
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence            469999999999999999999999999999999999999999761                      1 10 0     11


Q ss_pred             ccCccccccccccCCCHHHHHHHHHhCcEEEeccc--------hh--hHHHHHHHhCCccccccc----ccCcCC--Ccc
Q psy14945        273 FAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAK--------RR--NMERLSLACGGTAMNSVE----GLEPAH--LGY  336 (629)
Q Consensus       273 ~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~--------~~--dl~rIak~tGg~i~~s~~----~l~~~~--lG~  336 (629)
                      .+..++.+++++|.++. ..++|++..+.++..+.        ..  +.++|.+..|+++.+|..    .+++..  .+.
T Consensus       155 ~L~~vA~tsl~sK~~~~-~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m  233 (559)
T 3p9d_A          155 TLINIAKTSMSSKIIGA-DSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAM  233 (559)
T ss_dssp             THHHHHHHTTSSSGGGT-THHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTS
T ss_pred             HHHHHHHHHhccCcccc-hhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCc
Confidence            22223445666665542 23344444444443332        11  236677778998887631    133222  123


Q ss_pred             cceEEEEEEc--CeeEEEEeecCC-----CccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHH
Q psy14945        337 AGSVFEHVLG--EEKFTFVEECKN-----PQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVA  407 (629)
Q Consensus       337 ~~~v~e~~i~--~~~~~~~~~~~~-----~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~  407 (629)
                      +.     .+.  +.++++++ |+-     ....++.+..+.+.  +.++-++.+...+..+.... -+.|+..+|..+.+
T Consensus       234 ~~-----~ie~~n~kIll~~-~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g-~~lvI~~~~I~~~a  306 (559)
T 3p9d_A          234 PK-----RIAGGNVKIACLD-LNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAG-AQVVLTTKGIDDLC  306 (559)
T ss_dssp             CS-----EECSSSBCEEEET-TCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTC-CSEEEESSCCCGGG
T ss_pred             ce-----eeccCCceEEEEe-ccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhC-CCEEEEcCCCCHHH
Confidence            32     245  88888886 431     24688999888764  34444455565555554332 24588899999999


Q ss_pred             HHHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHH------HHHHHhhcCC-----------------
Q psy14945        408 AWHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTL------VKLQEACGEA-----------------  463 (629)
Q Consensus       408 l~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl------~~L~~~~~~~-----------------  463 (629)
                      ++ ||.+++. .+....+..++++|++..           ...+..+      +++...+.+.                 
T Consensus       307 l~-~L~~~~I~av~~~~k~~le~ia~~TG-----------a~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~  374 (559)
T 3p9d_A          307 LK-EFVEAKIMGVRRCKKEDLRRIARATG-----------ATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILI  374 (559)
T ss_dssp             TH-HHHHTTCEEESSCCHHHHHHHHHHSS-----------CCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECE
T ss_pred             HH-HHHHcCCceEccCCHHHHHHHHHHhC-----------CEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEE
Confidence            97 7776664 455667888999888844           3322222      1222222210                 


Q ss_pred             ------CCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHH
Q psy14945        464 ------PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREI  537 (629)
Q Consensus       464 ------~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~  537 (629)
                            +..++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|+
T Consensus       375 ~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAL~~~r~av~-------~g~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~  446 (559)
T 3p9d_A          375 KGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLE-------SGNVVPGGGCVE-AALNIYLDNFATTVGSREQL  446 (559)
T ss_dssp             EEESSSCCCCEEEEESCHHHHHHHHHHHHHHHHHHHHHHT-------SSCEECTTTTHH-HHHHHHHHHHHTTSCTTHHH
T ss_pred             EcCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhh-------cCCEEeCccHHH-HHHHHHHHHHhcccChHHHH
Confidence                  1123445777888999999999999999999997       999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCc------------eeeEecCCC
Q psy14945        538 LLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGV------------AVGVDVNSG  605 (629)
Q Consensus       538 ~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~------------~~Gvd~~~g  605 (629)
                      +++                  +|++|||+||++||+|||+|+.+++++||+.|.+ ++.            ++|+|+.+|
T Consensus       447 ~i~------------------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~~~~~~~~~~~~~G~d~~~g  507 (559)
T 3p9d_A          447 AIA------------------EFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAA-SQMAKPEDVKRRSYRNYGLDLIRG  507 (559)
T ss_dssp             HHH------------------HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHT-TSCCC----CCCCCCCEEECTTSS
T ss_pred             HHH------------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-cccccccccccccccceeEECCCC
Confidence            999                  4677788899999999999999999999999976 443            799999999


Q ss_pred             cccccccCCccccHHHHHHHhhc
Q psy14945        606 EVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       606 ~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      ++.||.+.|||||+.||+|+|++
T Consensus       508 ~~~dm~~~gI~dp~~vk~~al~~  530 (559)
T 3p9d_A          508 KIVDEIHAGVLEPTISKVKSLKS  530 (559)
T ss_dssp             SEEESTTSSCCEEHHHHHHHHHH
T ss_pred             cEeehhhccCEecHHHHHHHHHH
Confidence            99999999999999999999974

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=100.00  E-value=1.7e-38  Score=354.94  Aligned_cols=360  Identities=16%  Similarity=0.209  Sum_probs=256.7

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHH-Hh------hcc------------------c-----
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE-VN------LKM------------------H-----  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~-~~------~~~------------------~-----  271 (629)
                      .+||.++|+++.++.|++++|||||||+.++++||++|+.||+. +.      .++                  .     
T Consensus        69 ~~hP~Akll~e~a~~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~  148 (527)
T 3p9d_B           69 LDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTM  148 (527)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCCHHH
T ss_pred             cCCHHHHHHHHHHHHhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCcchh
Confidence            46999999999999999999999999999999999999999866 30      000                  0     


Q ss_pred             --cccCccccccccccCCCHHHHHHHHHhCcEEEeccchh---hHHHHHHHhCCcccccc--c--ccCcCCCcc-cceEE
Q psy14945        272 --KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR---NMERLSLACGGTAMNSV--E--GLEPAHLGY-AGSVF  341 (629)
Q Consensus       272 --~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~---dl~rIak~tGg~i~~s~--~--~l~~~~lG~-~~~v~  341 (629)
                        +.+..++.+++++|.++. ..++|.+..+.++..+...   ++++|.+..|+++.++.  +  .+++..... .+   
T Consensus       149 ~~~~l~~vA~tSl~sK~~~~-~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~---  224 (527)
T 3p9d_B          149 FREDLIHIAKTTLSSKILSQ-DKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPK---  224 (527)
T ss_dssp             HHHHHHHHHHHHHTTSGGGG-GHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSCCS---
T ss_pred             hHHHHHHHHHhccccCcccc-hHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCCCe---
Confidence              111123334555554432 2455666666666666543   35677777888887763  1  133322211 22   


Q ss_pred             EEEEcCeeEEEEeecC----CC--ccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHH
Q psy14945        342 EHVLGEEKFTFVEECK----NP--QSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ  413 (629)
Q Consensus       342 e~~i~~~~~~~~~~~~----~~--~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~  413 (629)
                        ++.+.++.++. |+    .+  ...++.+.++.+.  ..++.++.+...+..+... .-+.|+...|..+++++ ||.
T Consensus       225 --~~~n~kIlll~-~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~-g~~vvi~~~~I~~~al~-~L~  299 (527)
T 3p9d_B          225 --RIENAKILIAN-TTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKF-GINTFINRQLIYDYPEQ-LFT  299 (527)
T ss_dssp             --CCSSCEEEEEC-SCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTT-CCBEEESSCCCTTTHHH-HHH
T ss_pred             --eeecceEEEec-cccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCHHHHH-HHH
Confidence              34688888886 33    12  2455556655542  2333344455554444222 22457888888889886 777


Q ss_pred             hhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-----------------C---Cc--eEE
Q psy14945        414 NYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-----------------P---GV--AVG  469 (629)
Q Consensus       414 ~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-----------------~---~~--~~G  469 (629)
                      +.+. .+....+..++++|++           +|...+..++++...+.+ +                 |   ..  ++-
T Consensus       300 ~~~i~av~~~~~~dle~ia~~-----------tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~  368 (527)
T 3p9d_B          300 DLGINSIEHADFEGVERLALV-----------TGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIV  368 (527)
T ss_dssp             HTCBCCCCCCHHHHHHHHHHH-----------TCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCSCCEECB
T ss_pred             HCCCEEEecCCHHHHHHHHHH-----------hCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCCCEEEEE
Confidence            7653 4455567778888877           444433333333222221 0                 1   11  223


Q ss_pred             EEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhh
Q psy14945        470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK  549 (629)
Q Consensus       470 id~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~  549 (629)
                      +++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++++.+.++++|++++         
T Consensus       369 lrg~te~~l~E~kr~i~DAl~~~r~av~-------~g~iVpGGGa~e-~~~s~~L~~~~~~~~g~eq~~i~---------  431 (527)
T 3p9d_B          369 LRGATDQTLDEAERSLHDALSVLSQTTK-------ETRTVLGGGCAE-MVMSKAVDTEAQNIDGKKSLAVE---------  431 (527)
T ss_dssp             CCTTCTTHHHHHHTHHHHHHHHHHHHHH-------CCCEEETTTHHH-HHHHHHHHHHHHHHCSHHHHHHH---------
T ss_pred             EcCCCHHHHHHHHHHHHHHHHHHHHHHh-------cCCcccCCcHHH-HHHHHHHHHHHhccCcHHHHHHH---------
Confidence            4667889999999999999999999998       999999999999 99999999999888999999999         


Q ss_pred             hHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        550 VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       550 ~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                               +|++|||+||++||+|||+|+.+++++||+.|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       432 ---------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~-~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~  500 (527)
T 3p9d_B          432 ---------AFARALRQLPTILADNAGFDSSELVSKLRSSIYN-GISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSS  500 (527)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHH-TCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CCCceeEECCCCCCcchHhccCEEcHHHHHHHHHH
Confidence                     4667778899999999999999999999999986 66789999999999999999999999999999974

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=100.00  E-value=6.1e-38  Score=351.63  Aligned_cols=364  Identities=21%  Similarity=0.265  Sum_probs=253.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHH-------------------hh-----cc------c
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEV-------------------NL-----KM------H  271 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~-------------------~~-----~~------~  271 (629)
                      .+||+++|+++.++.|++++|||||||+.++++||++|+.||+.+                   .+     ..      +
T Consensus        68 v~hP~akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~  147 (546)
T 3p9d_F           68 IQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDR  147 (546)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTC
T ss_pred             CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccccCH
Confidence            479999999999999999999999999999999999999998661                   00     00      1


Q ss_pred             cccCccccccccccCCCHHHHHHHHHhCcEEEeccch-------hhHHHHHHHhCCccccccc--c--cCcCCCcccceE
Q psy14945        272 KFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKR-------RNMERLSLACGGTAMNSVE--G--LEPAHLGYAGSV  340 (629)
Q Consensus       272 ~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~-------~dl~rIak~tGg~i~~s~~--~--l~~~~lG~~~~v  340 (629)
                      +.+..++.+++++| +.....++|++.++.++..+..       .++.++.+..|+++.+|..  .  ++.... +..  
T Consensus       148 ~~L~~vA~tsl~sK-i~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~-~~~--  223 (546)
T 3p9d_F          148 EFLLQVARSSLLTK-VDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGR-HPD--  223 (546)
T ss_dssp             HHHHHHHHHHTCST-THHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCC-SSS--
T ss_pred             HHHHHHHHHHhCCC-cchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccc-ccc--
Confidence            11222333455554 3334455666666655544431       1345667777888887741  1  222211 111  


Q ss_pred             EEEEEcCeeEEEEeecC-----CCccEEEEecCCCcc--CHHHHHHHHHhhHHHHHHHh----h----CC-CcccCCChH
Q psy14945        341 FEHVLGEEKFTFVEECK-----NPQSVTILLKGPNKH--TLAQTKDAVRDGLRAIKNTI----D----DG-AVVPGAGAF  404 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~-----~~~~~TIll~g~~~~--~l~e~~r~i~dal~vv~~~~----~----~~-~VV~GGG~~  404 (629)
                      ....+.+.++.+++ |+     .....++.+..+.+.  ++++-++.+.+.+..+..+.    +    .| .|+...|..
T Consensus       224 m~~~~en~kIll~~-~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~  302 (546)
T 3p9d_F          224 MPTRVKNAYVLILN-VSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGID  302 (546)
T ss_dssp             SCSSBCSCCCCEEC-CCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCC
T ss_pred             CcceecCceEEEec-CcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCc
Confidence            01225588888886 33     124677888887754  33333344444443332221    1    12 456677999


Q ss_pred             HHHHHHHHHhhhh-hcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC-C-------------------
Q psy14945        405 EVAAWHALQNYKN-TVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE-A-------------------  463 (629)
Q Consensus       405 El~l~~~L~~~~~-~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~-~-------------------  463 (629)
                      +++++ ||.+++. .+....+..++++|++.           |...+..++++...+.+ +                   
T Consensus       303 ~~Al~-~L~~~gI~~vr~v~~~~leria~~t-----------Ga~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~  370 (546)
T 3p9d_F          303 PMSLD-VFAKHNILALRRAKRRNMERLQLVT-----------GGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTEN  370 (546)
T ss_dssp             HHHHH-HHTTTTCEEECCCCHHHHHHHHHTT-----------TBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSC
T ss_pred             HHHHH-HHHHCCCeeEecCCHHHHHHHHHHh-----------CCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecC
Confidence            99996 8877664 34444577788888774           43333222222222221 0                   


Q ss_pred             C-Cc--eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHH---hhccCCChHHH
Q psy14945        464 P-GV--AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLES---LKITTPPSREI  537 (629)
Q Consensus       464 ~-~~--~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~---~~~~~~~~~~~  537 (629)
                      + ..  ++-+++.|...+++.++.++|++++.+++++       ++++|||||++| ++++..|++   ++.+.++++|+
T Consensus       371 ~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~-------~~~iVpGGGa~e-~~~s~~L~~~~~~~~~~~g~eq~  442 (546)
T 3p9d_F          371 TDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLK-------DKNIIPGAGAFY-IALSRYLRSANMNKLGAKGKTKT  442 (546)
T ss_dssp             SCCSCEEEECCCSCHHHHHHHHHHHHHHHHHHHHHTT-------SCCEEETTTHHH-HHHHHHHHHHHTTTTTTTSHHHH
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhc-------CCcEEeCCCHHH-HHHHHHHHhhhhhhhcCchHHHH
Confidence            1 11  2334666888999999999999999999997       899999999999 999999999   58889999999


Q ss_pred             HHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhc----CCCceeeEecCCCcccccccC
Q psy14945        538 LLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGE----APGVAVGVDVNSGEVLNPTSA  613 (629)
Q Consensus       538 ~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~----~~~~~~Gvd~~~g~i~d~~~~  613 (629)
                      +++                  +|++|||+||++||+|||+|+.+++++||+.|.+    .++.++|+|+.+|++.||.+.
T Consensus       443 ~i~------------------~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~~  504 (546)
T 3p9d_F          443 GIE------------------AFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIE  504 (546)
T ss_dssp             HHH------------------HHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGGG
T ss_pred             HHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHhc
Confidence            999                  4677788899999999999999999999999962    124689999999999999999


Q ss_pred             CccccHHHHHHHhhc
Q psy14945        614 GIYDNLTVKRQIINS  628 (629)
Q Consensus       614 gI~dp~~vK~~~i~~  628 (629)
                      |||||+.||+|+|++
T Consensus       505 gI~dp~~vk~~al~~  519 (546)
T 3p9d_F          505 GIWDSYRVLRNAITG  519 (546)
T ss_dssp             TCEEEHHHHHHHHHH
T ss_pred             cCEecHHHHHHHHHH
Confidence            999999999999974

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=99.97  E-value=8.3e-31  Score=252.59  Aligned_cols=173  Identities=27%  Similarity=0.454  Sum_probs=146.5

Q ss_pred             ccceEEEEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhh
Q psy14945        162 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMT  241 (629)
Q Consensus       162 ~~dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~  241 (629)
                      +.||+|++|++|++++.|++||++++||||++++|+|++++++.+.         ++.+++..++.+++.+|++++++. 
T Consensus         1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~---------~v~i~~~~~~~~~~~~E~~~l~~~-   70 (178)
T 1gml_A            1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQT---------DIEITREEDFTRILQMEEEYIHQL-   70 (178)
T ss_dssp             --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC-----------------------CHHHHHHHHHHHHHHH-
T ss_pred             CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCcc---------EEEECCHHHHHHHHHHHHHHHHHH-
Confidence            4689999999999999999999999999999999999999999876         789999999999999999999999 


Q ss_pred             CCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCc
Q psy14945        242 GDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGT  321 (629)
Q Consensus       242 GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~  321 (629)
                             |.+|.             ..++    .+    ++++++|+|.+++||++++|++++++++++++|||++|||+
T Consensus        71 -------v~kI~-------------~~g~----nV----Vl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~  122 (178)
T 1gml_A           71 -------CEDII-------------QLKP----DV----VITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR  122 (178)
T ss_dssp             -------HHHHH-------------TTCC----SE----EEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCC
T ss_pred             -------HHHHh-------------hcCC----cE----EEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCe
Confidence                   99988             5565    33    57899999999999999999999999999999999999999


Q ss_pred             ccccccccCcCCCcc-cceEEEEEEcCeeEEEEeecCCCccEEEEecCCCcc
Q psy14945        322 AMNSVEGLEPAHLGY-AGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKH  372 (629)
Q Consensus       322 i~~s~~~l~~~~lG~-~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~  372 (629)
                      +++++++++++.+|+ |+.+++.+++++++++|++|+++..|||+|||++..
T Consensus       123 iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~~~~~TIllRG~~~~  174 (178)
T 1gml_A          123 IVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASHH  174 (178)
T ss_dssp             EESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESSTTSCEEEEEC----
T ss_pred             EeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCCCCEEEEEEECCCcc
Confidence            999999999999999 999999999999999999999999999999999853

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=99.97  E-value=1.8e-32  Score=306.13  Aligned_cols=132  Identities=16%  Similarity=0.240  Sum_probs=120.5

Q ss_pred             eEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh
Q psy14945        467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSL  546 (629)
Q Consensus       467 ~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al  546 (629)
                      ++-+++.|...+++.++.++|++++.+++++       ++ +|||||++| ++++..|++++.+.++++|++++      
T Consensus       376 tI~lrG~te~~l~E~~r~i~DAl~~~r~av~-------~g-iVpGGGa~e-~~~s~~L~~~~~~~~g~~q~~i~------  440 (543)
T 1we3_A          376 VIRVGAATETELKEKKHRFEDALNATRAAVE-------EG-IVPGGGVTL-LRAISAVEELIKKLEGDEATGAK------  440 (543)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHHHHHHH-------HC-EEETTTHHH-HHHHHHHHHHHTTCCHHHHHHHH------
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhc-------cC-cCCCccHHH-HHHHHHHHHHhhccCchHHHHHH------
Confidence            3446777888999999999999999999997       66 999999999 99999999999888999999999      


Q ss_pred             hhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHh
Q psy14945        547 RTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII  626 (629)
Q Consensus       547 ~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i  626 (629)
                                  +|++||++||++||+|||+|+.+++++||+.|.   +.++|+|+.+|++.||.+.|||||+.||+|+|
T Consensus       441 ------------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al  505 (543)
T 1we3_A          441 ------------IVRRALEEPARQIAENAGYEGSVIVQQILAETK---NPRYGFNAATGEFVDMVEAGIVDPAKVTRSAL  505 (543)
T ss_dssp             ------------HHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS---CTTEEEETTTTEEEETTTTTCEEEHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC---CCCEEEeCCCCeecccccCCcCccHHHHHHHH
Confidence                        466777889999999999999999999999883   46799999999999999999999999999999


Q ss_pred             hc
Q psy14945        627 NS  628 (629)
Q Consensus       627 ~~  628 (629)
                      ++
T Consensus       506 ~~  507 (543)
T 1we3_A          506 QN  507 (543)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=99.97  E-value=2.4e-32  Score=305.05  Aligned_cols=344  Identities=14%  Similarity=0.125  Sum_probs=208.6

Q ss_pred             cccc----HHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhcc---------------------------
Q psy14945        222 IQHP----TASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKM---------------------------  270 (629)
Q Consensus       222 ~~~~----~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~---------------------------  270 (629)
                      .+||    .++|+++.++.|++++|||||||+.++++||++|+.|++.+ ..|                           
T Consensus        62 ~~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~G-ihP~~I~~G~~~A~~~a~~~L~~~s~~v~~  140 (545)
T 1iok_A           62 LSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAG-MNPMDLKRGIDVATAKVVEAIKSAARPVND  140 (545)
T ss_dssp             CSSHHHHHHHHHHHHHHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHTTCBCCCS
T ss_pred             cCChhhHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            4799    99999999999999999999999999999999999999772 111                           


Q ss_pred             ccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccc-----ccCcCCCc-----ccceE
Q psy14945        271 HKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVE-----GLEPAHLG-----YAGSV  340 (629)
Q Consensus       271 ~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~-----~l~~~~lG-----~~~~v  340 (629)
                      ++.+.-++.++++   -++...++.+++.    ..+.......|  ..|+++.+|+.     .+++....     ..+. 
T Consensus       141 ~e~l~~va~iS~~---~~~~i~~li~dAv----~~V~~~g~I~V--e~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~-  210 (545)
T 1iok_A          141 SSEVAQVGTISAN---GESFIGQQIAEAM----QRVGNEGVITV--EENKGMETEVEVVEGMQFDRGYLSPYFVTNADK-  210 (545)
T ss_dssp             TTTTTHHHHHTTT---TCHHHHHHHHHHH----HHHCTTSCCCC--EECSSSCCEEEEECCEECSCCCSCGGGCCCSSS-
T ss_pred             HHHHHHHHHhhcC---CchhHHHHHHHHH----HHhccCCeEEE--EeCCccccceEEEecEEEecCccccccccCccc-
Confidence            1111111111111   1233333333322    22221111111  15777766632     12222110     0111 


Q ss_pred             EEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhh---
Q psy14945        341 FEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKN---  417 (629)
Q Consensus       341 ~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~---  417 (629)
                      ....+.+.++.+++ ++        |..+.+ .+.-+++        +... .-+.++...+..+.+++ +|...+.   
T Consensus       211 m~~~~en~~Ill~d-~~--------I~~~~~-l~~~le~--------i~~~-g~~lvIi~~~I~~~Al~-~L~~n~irg~  270 (545)
T 1iok_A          211 MIAELEDAYILLHE-KK--------LSSLQP-MVPLLES--------VIQS-QKPLLIVAEDVEGEALA-TLVVNKLRGG  270 (545)
T ss_dssp             SCEEEEEEEEEECS-SC--------BCCCCC---------------------CCCCEEEESCBC----------------
T ss_pred             CceeecCCeEEEEc-CC--------cCCHHH-HHHHHHH--------HHhc-CCCEEEECCCcCHHHHH-HHHHcccccc
Confidence            01123456665554 32        333332 2222222        1111 22568888899999997 5543211   


Q ss_pred             ---------hcCcchHHHHHHHHHHHhhhhHH------HH----HhcCC------------------ChHHH---HHHHH
Q psy14945        418 ---------TVKGKSRLGIQAYAEALLIIPKT------IA----VNSGF------------------DAQDT---LVKLQ  457 (629)
Q Consensus       418 ---------~i~~~~k~~i~~fa~ALe~ip~~------L~----~NaG~------------------d~~~v---l~~L~  457 (629)
                               .+....+..++++|++....+-.      +.    +..|.                  ++..+   +.+++
T Consensus       271 ~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~  350 (545)
T 1iok_A          271 LKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIR  350 (545)
T ss_dssp             --CEEEECSCCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHHHHH
T ss_pred             ceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEecCEEEEEeCCCCHHHHHHHHHHHH
Confidence                     12245677888888876653321      10    01110                  11110   11111


Q ss_pred             HhhcCC------------------CCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHH
Q psy14945        458 EACGEA------------------PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLK  519 (629)
Q Consensus       458 ~~~~~~------------------~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~  519 (629)
                      .....+                  +..++-+++.|...+++.++.++|++++.+++++       ++ +|||||++| ++
T Consensus       351 ~~~~~~~s~~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~-------~g-iVpGGGa~e-~~  421 (545)
T 1iok_A          351 QQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQ-------EG-IVVGGGVAL-VQ  421 (545)
T ss_dssp             HHHTTCCCSSHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHH-------HC-EEETTTHHH-HH
T ss_pred             HHHhccCchhhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhh-------cC-CCCCchHHH-HH
Confidence            100000                  0123445677888999999999999999999997       66 999999999 99


Q ss_pred             HHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceee
Q psy14945        520 ALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVG  599 (629)
Q Consensus       520 ~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~G  599 (629)
                      ++..|++++. .++++|+++++                  |++||++||++||+|||+|+.+++++||+.|    +.++|
T Consensus       422 ~s~~L~~~~~-~~g~~q~~i~~------------------~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~----~~~~G  478 (545)
T 1iok_A          422 GAKVLEGLSG-ANSDQDAGIAI------------------IRRALEAPMRQIAENAGVDGAVVAGKVRESS----DKAFG  478 (545)
T ss_dssp             HGGGGGSCCC-SSHHHHHHHHH------------------HHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC----STTEE
T ss_pred             HHHHHHHHhc-cCchHHHHHHH------------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCee
Confidence            9999999987 78899999994                  6677788999999999999999999999876    25799


Q ss_pred             EecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        600 VDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       600 vd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +|+.+|++.||.+.|||||+.||+|+|++
T Consensus       479 ~d~~~g~~~dm~~~gI~dp~~vk~~al~~  507 (545)
T 1iok_A          479 FNAQTEEYGDMFKFGVIDPAKVVRTALED  507 (545)
T ss_dssp             EETTTTEEEEHHHHTCEEEHHHHHHHHHH
T ss_pred             EeCCCCcccchHhcCcEEccHHHHHHHHH
Confidence            99999999999999999999999999974

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=99.96  E-value=2.6e-31  Score=296.50  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=115.5

Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+++.++.++|++++.+++++       ++ +|||||++| ++++..|++++. .++++|+++++      
T Consensus       378 I~vrG~te~~l~E~kr~i~DAl~~~r~av~-------~g-iVpGGGa~e-~~~s~~L~~~~~-~~g~~q~~i~~------  441 (547)
T 1kp8_A          378 IKVGAATEVEMKEKKARVEDALHATRAAVE-------EG-VVAGGGVAL-IRVASKLADLRG-QNADQNVGIKV------  441 (547)
T ss_dssp             EECCCSSHHHHHHHHHHHHHHHHHHHHHHH-------HC-EEETTTHHH-HHHHHHTTTCCC-SSHHHHHHHHH------
T ss_pred             EEEcCCcHhHHHHHHHHHHHHHHHHHHhcc-------CC-EEeCCcHHH-HHHHHHHHHHhc-cCchHHHHHHH------
Confidence            345667888999999999999999999997       76 999999999 999999999986 78899999994      


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                  |++||++||++||+|||+|+.+++++||+.     +.++|+|+.+|++.||.+.|||||+.||+|+|+
T Consensus       442 ------------~a~ALe~ip~~la~NaG~d~~~vv~~l~~~-----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~  504 (547)
T 1kp8_A          442 ------------ALRAMEAPLRQIVLNCGEEPSVVANTVKGG-----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQ  504 (547)
T ss_dssp             ------------HHHHTTHHHHHHHHHHTSCHHHHHHHHHHS-----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCCEeEeCCCCccccchhcCceechHhHHHHHH
Confidence                        667778899999999999999999999964     257999999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       505 ~  505 (547)
T 1kp8_A          505 Y  505 (547)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=99.96  E-value=7.3e-32  Score=300.34  Aligned_cols=127  Identities=16%  Similarity=0.207  Sum_probs=114.8

Q ss_pred             EEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Q psy14945        468 VGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLR  547 (629)
Q Consensus       468 ~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~  547 (629)
                      +-+++.|...+++.++.+.|++++.+++++       ++ +|||||++| ++++..|++++  .++++|++++       
T Consensus       377 I~vrG~te~~l~E~er~l~DAl~a~r~av~-------~g-iVpGGGa~e-~~~s~~L~~~~--~~g~eq~~i~-------  438 (546)
T 3rtk_A          377 IKAGAATEVELKERKHRIEDAVRNAKAAVE-------EG-IVAGGGVTL-LQAAPTLDELK--LEGDEATGAN-------  438 (546)
T ss_dssp             EECCCCSSTHHHHHHHHHHHHHHHHHHHHH-------HC-EEETTTHHH-HTTGGGSTTSC--CCTTHHHHHH-------
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHHHHHHHh-------CC-cccCCcHHH-HHHHHHHHHhc--cccHHHHHHH-------
Confidence            345677889999999999999999999987       66 999999999 99999999987  7899999999       


Q ss_pred             hhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        548 TKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       548 ~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                                 +|++|||+||++||+|||+|+.+++++||+.+ .    ++|+|+.+|++.||.+.|||||+.||+|+|+
T Consensus       439 -----------~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~-~----~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~  502 (546)
T 3rtk_A          439 -----------IVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP-A----GHGLNAQTGVYEDLLAAGVADPVKVTRSALQ  502 (546)
T ss_dssp             -----------HHHHHTTHHHHHHHTTTTCCHHHHHHHHHHSC-T----TEECCSSSCCCEETTTTTCEEEHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C----CEeEcCCCCcEeeHHHcCCEecHHHHHHHHH
Confidence                       46677788999999999999999999999852 2    3899999999999999999999999999997


Q ss_pred             c
Q psy14945        628 S  628 (629)
Q Consensus       628 ~  628 (629)
                      +
T Consensus       503 ~  503 (546)
T 3rtk_A          503 N  503 (546)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=99.93  E-value=2.9e-26  Score=216.72  Aligned_cols=154  Identities=29%  Similarity=0.468  Sum_probs=143.1

Q ss_pred             EEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchH
Q psy14945        168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTS  247 (629)
Q Consensus       168 i~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~  247 (629)
                      ++|++|++++.|++||++++||||++++|+|++++++.+.         ++.+++..++.+++.+|++++++.       
T Consensus         1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~---------~v~i~~~~~~~~~~~~E~~~l~~~-------   64 (159)
T 1ass_A            1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEA---------KVQISDPSKIQDFLNQETNTFKQM-------   64 (159)
T ss_dssp             CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHH---------HHHTSCGGGHHHHHHHHHHHHHHH-------
T ss_pred             CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccce---------eEEECCHHHHHHHHHHHHHHHHHH-------
Confidence            5799999999999999999999999999999999999876         788999999999999999999999       


Q ss_pred             HHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccc
Q psy14945        248 TVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVE  327 (629)
Q Consensus       248 Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~  327 (629)
                       |..|.             ..++    .+    ++++++|+|.+++||++++|++++++++++++|||++|||+++++++
T Consensus        65 -v~kI~-------------~~g~----nV----Vl~~k~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~  122 (159)
T 1ass_A           65 -VEKIK-------------KSGA----NV----VLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLD  122 (159)
T ss_dssp             -HHHHH-------------HTTC----SE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTT
T ss_pred             -hhhhh-------------hCCC----eE----EEECCccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccc
Confidence             99998             5555    33    57899999999999999999999999999999999999999999999


Q ss_pred             ccCcCCCcccceEEEEEEcCeeEEEEeecCCC
Q psy14945        328 GLEPAHLGYAGSVFEHVLGEEKFTFVEECKNP  359 (629)
Q Consensus       328 ~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~  359 (629)
                      +++++.+|+|+.+++.+++++++++|++|++.
T Consensus       123 ~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~  154 (159)
T 1ass_A          123 DLTPSVLGEAETVEERKIGDDRMTFVMGCKNH  154 (159)
T ss_dssp             SCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred             cCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence            99999999999999999999999999998763

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=99.45  E-value=6e-14  Score=134.82  Aligned_cols=77  Identities=25%  Similarity=0.357  Sum_probs=61.5

Q ss_pred             CCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCC---ccc-CcchhhhHHHhcCchhhhhhhhcccccc
Q psy14945         13 GDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP---WCA-TPGHAQVREERAHPDMQHQHGIREEGVV   88 (629)
Q Consensus        13 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~---~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~   88 (629)
                      +||+||+|+|+|++.+||+|||+++||+|+++|++|||+|+|.+.   +.+ .+.+++.++|++++++++++...-+.-+
T Consensus         2 ~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nV   81 (178)
T 1gml_A            2 EDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDV   81 (178)
T ss_dssp             -CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred             CCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcE
Confidence            699999999999999999999999999999999999999999655   445 4449999999999999999988777655


Q ss_pred             c
Q psy14945         89 L   89 (629)
Q Consensus        89 ~   89 (629)
                      +
T Consensus        82 V   82 (178)
T 1gml_A           82 V   82 (178)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=99.29  E-value=8.1e-13  Score=124.51  Aligned_cols=72  Identities=21%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             EeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCC---ccc-CcchhhhHHHhcCchhhhhhhhccccccc
Q psy14945         18 VKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP---WCA-TPGHAQVREERAHPDMQHQHGIREEGVVL   89 (629)
Q Consensus        18 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~---~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~   89 (629)
                      |+|+|+||+.+||+|||+++||+|+++|++|||+|+|.+.   +.+ ++.+++.++|++++++++++...-+.-++
T Consensus         1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVV   76 (159)
T 1ass_A            1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVV   76 (159)
T ss_dssp             CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEE
Confidence            6899999999999999999999999999999999999654   455 44499999999999999999987776553

>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}

Probab=98.19  E-value=5e-08  Score=92.73  Aligned_cols=135  Identities=16%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             eEEEEeEEEeccCCCCC-------CcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHH
Q psy14945        165 IILVKGVVLNHGARHPD-------MPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAM  237 (629)
Q Consensus       165 S~li~Gvv~~~~~~~~~-------m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~  237 (629)
                      .++++||.|+++|.+|+       |...++||.||+++..++    ..+..+|.|+..+      ++..+.++..|.---
T Consensus         2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs----~i~~ilP~LE~~~------~~~kpLlIIAedveg   71 (194)
T 3m6c_A            2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKIS----SLPDLLPLLEKVA------GTGKPLLIVAEDVEG   71 (194)
T ss_dssp             CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEEC----CHHHHHHHHHHHH------HHTCCEEEEESEECH
T ss_pred             eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccC----CHHHHHHHHHHHH------HhCCCeEEEeccccc
Confidence            46789999999999996       455689999999999884    3344555555320      011111111111001


Q ss_pred             hhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHH
Q psy14945        238 DDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLA  317 (629)
Q Consensus       238 ~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~  317 (629)
                      +..    +|.|++                  +.++.+.+|++   ...|+.|                .++..++.||.+
T Consensus        72 eaL----atLvvN------------------klrg~l~v~AV---KAPgfGd----------------~Rk~~L~DiAil  110 (194)
T 3m6c_A           72 EAL----ATLVVN------------------AIRKTLKAVAV---KGPYFGD----------------RRKAFLEDLAVV  110 (194)
T ss_dssp             HHH----HHHHHH------------------HHHTSSCEEEE---ECSSCHH----------------HHHHHHHHHHHH
T ss_pred             chh----hhhhhh------------------hccceEEEEEE---ECCCCch----------------hhhhhhHhHHHh
Confidence            111    122222                  22344556642   2334433                135679999999


Q ss_pred             hCCccccc-----ccccCcCCCcccceEEEEEEcCeeEEEE
Q psy14945        318 CGGTAMNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFV  353 (629)
Q Consensus       318 tGg~i~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~  353 (629)
                      |||++++.     +++.+.+.+|+|+++.   ++.+..+++
T Consensus       111 TGg~visee~g~~Le~~~~~~LG~a~~v~---vtkd~T~iv  148 (194)
T 3m6c_A          111 TGGQVVNPDAGMVLREVGLEVLGSARRVV---VSKDDTVIV  148 (194)
T ss_dssp             HTCCCBCGGGTCCGGGCCGGGCEEEEEEE---ECSSCEEEE
T ss_pred             cCCeEEeccCCcccccCCHHHCCCccEEE---EcCCceEEe
Confidence            99999975     3456778899998776   444444444

>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1

Probab=98.15  E-value=9.6e-08  Score=86.72  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=80.2

Q ss_pred             eEEEeccCCCCCC-------cccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhC
Q psy14945        170 GVVLNHGARHPDM-------PKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTG  242 (629)
Q Consensus       170 Gvv~~~~~~~~~m-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~G  242 (629)
                      |+.|+++|.+|+|       ...++||.|++++..++    ..+..+|.|+..    .+...|  .++..|.---+.   
T Consensus         1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs----~i~~llP~LE~v----~~~~~p--LlIIAedvegea---   67 (145)
T 1srv_A            1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVS----NVRELLPILEQV----AQTGKP--LLIIAEDVEGEA---   67 (145)
T ss_dssp             CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEEC----CHHHHHHHHHHH----HTTTCC--EEEEESEECHHH---
T ss_pred             CccccCCccCceeecCccccEEEeeccEEEEeccccc----CHHHHHHHHHHH----HHHCCC--EEEEecccchhh---
Confidence            8999999999964       45688999999999884    345566666643    011111  222222211111   


Q ss_pred             CCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcc
Q psy14945        243 DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTA  322 (629)
Q Consensus       243 DGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i  322 (629)
                            +..+.             .++.++.+.+|++   ...|+.|                .++..++.||.+|||++
T Consensus        68 ------LatLv-------------vNklrg~l~v~AV---KAPgfGd----------------~Rk~~L~DiAilTGg~v  109 (145)
T 1srv_A           68 ------LATLV-------------VNKLRGTLSVAAV---KAPGFGD----------------RRKEMLKDIAAVTGGTV  109 (145)
T ss_dssp             ------HHHHH-------------HHHHTTSCCEEEE---ECCSSHH----------------HHHHHHHHHHHHHTCCE
T ss_pred             ------hhhhh-------------hhhhcccceEEEE---eCCCcch----------------hhHHHHHHHHHHhCCEE
Confidence                  12222             2233555666652   2334433                24568999999999999


Q ss_pred             cccc-----cccCcCCCcccceEEEEEEcCeeEEEEe
Q psy14945        323 MNSV-----EGLEPAHLGYAGSVFEHVLGEEKFTFVE  354 (629)
Q Consensus       323 ~~s~-----~~l~~~~lG~~~~v~e~~i~~~~~~~~~  354 (629)
                      ++.-     ++.+.+.+|+|+++.   +..++.+++.
T Consensus       110 isee~g~~Le~~~~~~LG~a~~v~---vtkd~TtIv~  143 (145)
T 1srv_A          110 ISEELGFKLENATLSMLGRAERVR---ITKDETTIVG  143 (145)
T ss_dssp             ECTTTTCCGGGCCGGGCEEEEEEE---ECSSCEEEEE
T ss_pred             EccccCCccccCCHhHCCccCEEE---EcCCCeEEeC
Confidence            9763     356677899998876   6666666654

>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A

Probab=98.03  E-value=2.7e-07  Score=87.89  Aligned_cols=131  Identities=16%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             EeEEEeccCCCCCC-------cccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhh
Q psy14945        169 KGVVLNHGARHPDM-------PKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMT  241 (629)
Q Consensus       169 ~Gvv~~~~~~~~~m-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~  241 (629)
                      +|+.|+++|.+|+|       ...++||.||+++..++    ..+..+|.|+..+      +...+.++..|.---+.. 
T Consensus        13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs----~i~~ilP~LE~v~------~~~rpLlIIAEDvegEAL-   81 (201)
T 3osx_A           13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKIS----NIRELLPVLEGVA------KASKPLVIIAEDVEGEAL-   81 (201)
T ss_dssp             CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEEC----CHHHHHHHHHHHH------TSSCCEEEEEEEECHHHH-
T ss_pred             cccEecCccCChheeecccCCEEEecCCeEEEEcCccC----CHHHHHHHHHHHH------HhCCCeEEEeccccchhh-
Confidence            59999999999974       45689999999999884    3445666666431      111111222222111111 


Q ss_pred             CCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCc
Q psy14945        242 GDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGT  321 (629)
Q Consensus       242 GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~  321 (629)
                         +|.|+++                  .++.+.+|++   ...|+.|                .++..++.||.+|||+
T Consensus        82 ---atLvvNk------------------lrg~l~v~AV---KAPgFGd----------------rRk~~L~DIAilTGg~  121 (201)
T 3osx_A           82 ---ATLVVNN------------------MRGIVKVASV---KAPGFGD----------------RRKAMLQDIATLTNGT  121 (201)
T ss_dssp             ---HHHHHHH------------------HHTSCCEEEE---ECSSCHH----------------HHHHHHHHHHHHHTCC
T ss_pred             ---hHHHHhh------------------ccceEEEEEE---eCCCCcc----------------chhhhhHhHHHHhCCE
Confidence               1222222                  2344566642   2334433                1456799999999999


Q ss_pred             cccc-----ccccCcCCCcccceEEEEEEcCeeEEEE
Q psy14945        322 AMNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFV  353 (629)
Q Consensus       322 i~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~  353 (629)
                      +++.     +++++.+.+|+|+++.   ++.+..+++
T Consensus       122 visee~g~~Le~~~~~~LG~a~~V~---vtkd~TtIv  155 (201)
T 3osx_A          122 VISEEIGLELEKATLEDLGQAKRVV---INKDTTTII  155 (201)
T ss_dssp             CBCGGGTCCGGGCCGGGCEEEEEEE---ECSSCEEEE
T ss_pred             EEecccCCccccCCHhhCCCccEEE---EcCCceEEe
Confidence            9976     3456777899998776   444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	629
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	1e-31
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	1e-08
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	1e-08
d1q3qa2	153	c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon	9e-08
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	2e-30
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	4e-11
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	5e-09
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	1e-07
d1assa_	152	c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo	3e-29
d1assa_	152	c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo	7e-09
d1assa_	152	c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo	9e-09
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	3e-29
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	4e-07
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	4e-07
d1a6db2	152	c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon	4e-07
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	6e-16
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	2e-06
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	3e-15
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	9e-06
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	3e-06
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	0.001
d1q3qa3	107	d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai	2e-05
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	4e-05
d1a6da3	105	d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai	0.001
d1a6db3	107	d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai	0.003

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score =  118 bits (296), Expect = 1e-31
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 38/191 (19%)

Query: 169 KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTAS 228
           +GVV++    HP MPK V+NA I   N ++E +K+ +   +  I+    + +        
Sbjct: 1   RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT-ETDAKINITSPDQLMS-------- 51

Query: 229 LIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGID 288
                                      L+Q +  + ++   + +   +     +   GID
Sbjct: 52  --------------------------FLEQEEKMLKDMVDHIAQTGANVVFVQK---GID 82

Query: 289 PQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEE 348
             +    A+ GI+A+RR K+ +ME+L+ A G   + +V+ L P  LGYA  V E  L  E
Sbjct: 83  DLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGE 142

Query: 349 KFTFVEECKNP 359
              FVE CKNP
Sbjct: 143 NMIFVEGCKNP 153

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 19 KGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
          +GVV+D    HP MPK V+NA I   N ++E +K
Sbjct: 1  RGVVIDKEVVHPRMPKRVENAKIALINEALEVKK 34

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 127 KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           +GVV++    HP MPK V+NA I   N ++E +K++ 
Sbjct: 1   RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 37

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 49.6 bits (118), Expect = 9e-08
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 86  GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           GVV++    HP MPK V+NA I   N ++E +K++ 
Sbjct: 2   GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 37

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  114 bits (287), Expect = 2e-30
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 39/203 (19%)

Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
           +++GV++N    HP M + +KN  I+  + S+EY+K                        
Sbjct: 4   VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK------------------------ 39

Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
                       +   D   +       +L+  + YI ++   + +  PD   +     G
Sbjct: 40  -----------GESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVIT---EKG 85

Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE-HVL 345
           I   +     R  + A+RR ++ +  R++ ACG   ++  E L    +G    + E   +
Sbjct: 86  ISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKI 145

Query: 346 GEEKFTFVEECKNPQSVTILLKG 368
           G+E FTF+ +CK+P++ TILL+G
Sbjct: 146 GDEYFTFITDCKDPKACTILLRG 168

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score = 59.7 bits (144), Expect = 4e-11
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSG 56
          DSC+++GV+++    HP M + +KN  I+  + S+EY+K  S 
Sbjct: 1  DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 43

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 13/39 (33%), Positives = 25/39 (64%)

Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           +++GV++N    HP M + +KN  I+  + S+EY+K + 
Sbjct: 4   VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 42

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 85  EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
            GV++N    HP M + +KN  I+  + S+EY+K + 
Sbjct: 6   RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 42

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  111 bits (278), Expect = 3e-29
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 38/190 (20%)

Query: 168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTA 227
           + G+V++    H  MP  VKNA I   + ++E +K+     + +IS    I + +     
Sbjct: 1   MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIE-AKVQISDPSKIQDFLNQ--- 56

Query: 228 SLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGI 287
                                         + + +   V  K+ K   +       + GI
Sbjct: 57  ------------------------------ETNTFKQMVE-KIKKSGANVVLC---QKGI 82

Query: 288 DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE 347
           D  +    A+EGI A+RR K+ +ME+L+ A G   +  ++ L P+ LG A +V E  +G+
Sbjct: 83  DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD 142

Query: 348 EKFTFVEECK 357
           ++ TFV  CK
Sbjct: 143 DRMTFVMGCK 152

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 52.7 bits (126), Expect = 7e-09
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 126 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           + G+V++    H  MP  VKNA I   + ++E +K+++
Sbjct: 1   MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 38

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 52.3 bits (125), Expect = 9e-09
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 18 VKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
          + G+V+D    H  MP  VKNA I   + ++E +K
Sbjct: 1  MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKK 35

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score =  110 bits (277), Expect = 3e-29
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 38/190 (20%)

Query: 170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASL 229
           G++++    HP MP  VK+A I   +  +E +K     +            +I+ P+   
Sbjct: 1   GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNL-----------RIEDPS--- 46

Query: 230 IARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP 289
                                +I + L Q +  + E+  K+     +   +   + GID 
Sbjct: 47  ---------------------MIQKFLAQEENMLREMVDKIKSVGANVVIT---QKGIDD 82

Query: 290 QSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEK 349
            +    +R GI A+RR K+ +M++L+ A G + +++++ +  + LG A  V +  +GE+ 
Sbjct: 83  MAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDY 142

Query: 350 FTFVEECKNP 359
            TFV  CKNP
Sbjct: 143 MTFVTGCKNP 152

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 20 GVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSG 56
          G+++D    HP MP  VK+A I   +  +E +K    
Sbjct: 1  GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFD 37

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 86  GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
           G++++    HP MP  VK+A I   +  +E +K + 
Sbjct: 1   GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 36

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 128 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
           G++++    HP MP  VK+A I   +  +E +K + 
Sbjct: 1   GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 36

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 75.5 bits (185), Expect = 6e-16
 Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 1/139 (0%)

Query: 360 QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTV 419
           Q+ T+L +G +   ++       +  R I + I + + + G GA E      L  Y N+V
Sbjct: 93  QAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSV 152

Query: 420 KGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLN 479
            G+ +L I+A+A+AL IIP+T+A N+G D  +TL+K  +A  E   ++VGVD+++  V +
Sbjct: 153 GGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIK-LKADDEKGRISVGVDLDNNGVGD 211

Query: 480 PTSAGIYDNLTVKRQIINS 498
             + G+ D L VK   + S
Sbjct: 212 MKAKGVVDPLRVKTHALES 230

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 500 IISGLHPRVITEGFTQARLKALEVLES------LKITTPPSREILLDVARTSLRTKVERE 553
           +  G+HP VI+ G+  A  +A ++++       L        E+ + +A+ +       +
Sbjct: 98  LDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQ 157

Query: 554 LADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSA 613
           LA       ++  +  +   N+G D  +TL+K  +A  E   ++VGVD+++  V +  + 
Sbjct: 158 LAIEAFA-KALEIIPRTLAENAGIDPINTLIK-LKADDEKGRISVGVDLDNNGVGDMKAK 215

Query: 614 GIYDNLTVKRQIINS 628
           G+ D L VK   + S
Sbjct: 216 GVVDPLRVKTHALES 230

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 73.6 bits (180), Expect = 3e-15
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 380 AVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPK 439
           A  +  R I       A   G GA        L++Y   + G+ +L I+ +A+A+  IP+
Sbjct: 110 ASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPR 169

Query: 440 TIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
            +A N+G D  D L+KL+    +      G++V +GE+ +    G+ + + V +Q I S
Sbjct: 170 ALAENAGLDPIDILLKLRAEHAKGN-KTYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 227

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 45.1 bits (106), Expect = 9e-06
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)

Query: 496 INSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK------ 549
               I   +HP VI+EG+  A  +A  V++ +      +       A  + R +      
Sbjct: 90  AQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKI 149

Query: 550 --VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEV 607
              ++   +  A+         +   N+G D  D L+KL+    +      G++V +GE+
Sbjct: 150 GGRQQLAIEKFADAIEEIPRALA--ENAGLDPIDILLKLRAEHAKGN-KTYGINVFTGEI 206

Query: 608 LNPTSAGIYDNLTVKRQIINS 628
            +    G+ + + V +Q I S
Sbjct: 207 EDMVKNGVIEPIRVGKQAIES 227

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 380 AVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPK 439
           A       +       AV+P  GA E+     L  Y   V GK  L I+ +A+AL IIPK
Sbjct: 123 AAEKAQEILDEIAIR-AVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPK 181

Query: 440 TIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
           T+A N+G D  + LVK+        G+ +G+DV  G+  +    GI + L VK+Q I S
Sbjct: 182 TLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 239

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 494 QIINSWIISGLHPRVITEGFTQARLKALEVLE--SLKITTPPSREILLDVARTSLRTKVE 551
           +     +   +HP +IT+G+  A  KA E+L+  +++   P      +++A        +
Sbjct: 101 RKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQ 160

Query: 552 RELADLLAEPNSVPSLRN---SATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVL 608
               + LA  N   +L+    +   N+G D  + LVK+        G+ +G+DV  G+  
Sbjct: 161 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPA 219

Query: 609 NPTSAGIYDNLTVKRQIINS 628
           +    GI + L VK+Q I S
Sbjct: 220 DMLEKGIIEPLRVKKQAIKS 239

>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 5/53 (9%), Positives = 14/53 (26%), Gaps = 3/53 (5%)

Query: 1   MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
            ++  +   +   +S LVK V +            +        +     +  
Sbjct: 54  NIKFEKKAGEGVEESELVKAVTIL---IRGGTEHVIDEVERALEDAVKVVKDV 103

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 387 AIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSG 446
            IK       +VPG G   + A  A++     ++G    G +    AL    + IA N+G
Sbjct: 128 KIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAG 187

Query: 447 FDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
           ++    + ++            G +  +GE ++   AGI D   V R  + +
Sbjct: 188 YEGSVIVQQILAETKNP---RYGFNAATGEFVDMVEAGIVDPAKVTRSALQN 236

>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 3/52 (5%), Positives = 12/52 (23%), Gaps = 3/52 (5%)

Query: 1  MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
           +++ +    +  D+  +  V +            V        +       
Sbjct: 51 NIKVDKKNGGSVNDTQFISAVSIL---IRGGTDHVVSEVERALNDAIRVVAI 99

>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 6/54 (11%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 1   MVELMEMKHKTPGDSCLVKG---VVLDHGARH--PDMPKSVKNAHILTCNISME 49
            +++++ +     D+ L+     +++     H   +M +S+ ++ +     ++E
Sbjct: 53  NIQVVKKQGGAIDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVVASALE 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	629
d1gmla_	168	Thermosome, A-domain {Mouse (Mus musculus), gamma	99.94
d1q3qa2	153	Thermosome, A-domain {Archaeon Thermococcus sp. ks	99.92
d1a6db2	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.92
d1assa_	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.91
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.9
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.83
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.83
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.74
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.71
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.6
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.54
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.49
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.39
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.26
d1gmla_	168	Thermosome, A-domain {Mouse (Mus musculus), gamma	99.17
d1q3qa2	153	Thermosome, A-domain {Archaeon Thermococcus sp. ks	99.03
d1a6db2	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	99.01
d1assa_	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	98.96
d1q3qa3	107	Thermosome, I domain {Archaeon Thermococcus sp. ks	98.95
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	98.95
d1a6da3	105	Thermosome, I domain {Archaeon Thermoplasma acidop	98.88
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	98.85
d1a6da3	105	Thermosome, I domain {Archaeon Thermoplasma acidop	98.84
d1a6db3	107	Thermosome, I domain {Archaeon Thermoplasma acidop	98.72
d1q3qa3	107	Thermosome, I domain {Archaeon Thermococcus sp. ks	98.66
d1a6db3	107	Thermosome, I domain {Archaeon Thermoplasma acidop	98.56
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	98.5
d1sjpa2	184	GroEL, A domain {Mycobacterium tuberculosis, GroEL	98.15
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	98.13
d1kida_	193	GroEL, A domain {Escherichia coli [TaxId: 562]}	98.11
d1ioka2	176	GroEL, A domain {Paracoccus denitrificans [TaxId:	98.1
d1srva_	145	GroEL, A domain {Thermus thermophilus [TaxId: 274]	98.04
d1sjpa3	89	GroEL, I domain {Mycobacterium tuberculosis, GroEL	87.05

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=99.94  E-value=3.6e-27  Score=223.12  Aligned_cols=167  Identities=26%  Similarity=0.461  Sum_probs=142.5

Q ss_pred             ceEEEEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCC
Q psy14945        164 CIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGD  243 (629)
Q Consensus       164 dS~li~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GD  243 (629)
                      ||++++|++|+++..|+.||++++||||++++|+|++++++.+.         ++.+++..++..++.+|++++.+.   
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~---------~i~i~~~~~l~~~~~~E~~~l~~~---   68 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQT---------DIEITREEDFTRILQMEEEYIHQL---   68 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC-----------------------CHHHHHHHHHHHHHHH---
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEecccccccccccc---------ceecCCHHHHHHHHHHHHHHHHHH---
Confidence            79999999999999999999999999999999999999998876         788999999999999999999999   


Q ss_pred             CchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccc
Q psy14945        244 GTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAM  323 (629)
Q Consensus       244 GTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~  323 (629)
                           +..|.             ..++    .+    ++++++|++.+++||++++|++++++++++++|||++|||+++
T Consensus        69 -----v~~I~-------------~~g~----~v----v~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv  122 (168)
T d1gmla_          69 -----CEDII-------------QLKP----DV----VITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIV  122 (168)
T ss_dssp             -----HHHHH-------------TTCC----SE----EEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEE
T ss_pred             -----HHHHH-------------hcCC----ce----EEEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCcee
Confidence                 88887             5555    22    5689999999999999999999999999999999999999999


Q ss_pred             ccccccCcCCCccc-ceEEEEEEcCeeEEEEeecCCCccEEEEecC
Q psy14945        324 NSVEGLEPAHLGYA-GSVFEHVLGEEKFTFVEECKNPQSVTILLKG  368 (629)
Q Consensus       324 ~s~~~l~~~~lG~~-~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g  368 (629)
                      +++++++++.+|+| +.+++..++++++++|++|+++..|||+|||
T Consensus       123 ~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~TIllRG  168 (168)
T d1gmla_         123 SRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG  168 (168)
T ss_dssp             SCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESSTTSCEEEEEC
T ss_pred             CchhhcCcccccccccEEEEEEECCeEEEEEEecCCCCEEEEEEeC
Confidence            99999999999995 6666678899999999999999999999998

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.92  E-value=5.1e-25  Score=204.98  Aligned_cols=153  Identities=35%  Similarity=0.529  Sum_probs=143.2

Q ss_pred             EeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHH
Q psy14945        169 KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTST  248 (629)
Q Consensus       169 ~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~V  248 (629)
                      +|++|++...|+.||++++||||++++|+|++++++.+.         ++.+++..++..++.+|++++.+.        
T Consensus         1 kGvv~~k~~~~~~mp~~i~n~kIlll~~~Le~~k~~~~~---------~i~i~~~~~l~~~~~~E~~~l~~~--------   63 (153)
T d1q3qa2           1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA---------KINITSPDQLMSFLEQEEKMLKDM--------   63 (153)
T ss_dssp             SSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCC---------CEEECSHHHHHHHHHHHHHHHHHH--------
T ss_pred             CeEEEeCCCCCccCCcccCCccEEEEecccccccccccc---------eEEecCHHHHHHHHHHHHHHHHHH--------
Confidence            499999999999999999999999999999999999886         899999999999999999999999        


Q ss_pred             HHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcccccccc
Q psy14945        249 VLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEG  328 (629)
Q Consensus       249 v~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~  328 (629)
                      +..|.             ..++    .+    ++++++|++.+++||+++||++++++++++++|||++|||++++++++
T Consensus        64 v~~I~-------------~~g~----nv----vl~~k~I~~~a~~~l~~~gI~~v~~v~~~dl~ria~~tGa~iv~si~~  122 (153)
T d1q3qa2          64 VDHIA-------------QTGA----NV----VFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKD  122 (153)
T ss_dssp             HHHHH-------------HHTC----CE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGG
T ss_pred             HHHHh-------------ccCc----cc----eeecCCCcHHHHHHHHHcCCceeccCCHHHHHHHHHhhCCEEecchhh
Confidence            88887             4454    22    568999999999999999999999999999999999999999999999


Q ss_pred             cCcCCCcccceEEEEEEcCeeEEEEeecCCC
Q psy14945        329 LEPAHLGYAGSVFEHVLGEEKFTFVEECKNP  359 (629)
Q Consensus       329 l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~  359 (629)
                      ++++.+|+|+.+++.+++++++++|+||++|
T Consensus       123 l~~~~LG~~~~~~~~~~g~~~~~~~~gc~~P  153 (153)
T d1q3qa2         123 LTPEDLGYAEVVEERKLAGENMIFVEGCKNP  153 (153)
T ss_dssp             CCGGGCEEESEEEEEEETTEEEEEEECCSSC
T ss_pred             CCcccCeeeEEEEEEEECCeeEEEEeCCCCC
Confidence            9999999999999999999999999999875

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.92  E-value=7e-25  Score=203.70  Aligned_cols=152  Identities=28%  Similarity=0.469  Sum_probs=142.4

Q ss_pred             eEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchHHH
Q psy14945        170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTSTV  249 (629)
Q Consensus       170 Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~Vv  249 (629)
                      |++|+++..|+.||++++||||++++|+|++++++.+.         ++.+++..++..++.+|++++.+.        +
T Consensus         1 Gvv~~k~~~~~~mpk~i~~~kIlll~~~Le~~k~~~~~---------~i~i~~~~~~~~~~~~E~~~l~~~--------v   63 (152)
T d1a6db2           1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT---------NLRIEDPSMIQKFLAQEENMLREM--------V   63 (152)
T ss_dssp             EEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEE---------EECCCSTTHHHHHHHHHHHHHHHH--------H
T ss_pred             CEEEeccCCCCCCCCcccCCcEEEEecccccccccccc---------eeeecCHHHHHHHHHHHHHHHHHH--------H
Confidence            89999999999999999999999999999999998776         888999999999999999999999        8


Q ss_pred             HHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccccc
Q psy14945        250 LVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGL  329 (629)
Q Consensus       250 ~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~~l  329 (629)
                      ..|.             ..++    .+    ++++++|++.+++||.++||++++++++++++|||++|||+++++++++
T Consensus        64 ~~i~-------------~~g~----nv----v~~~k~Idd~a~~~l~k~gI~~v~~v~~~dl~rla~~tGa~iv~s~~~l  122 (152)
T d1a6db2          64 DKIK-------------SVGA----NV----VITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEI  122 (152)
T ss_dssp             HHHH-------------HTTC----CE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGC
T ss_pred             HHHh-------------ccCC----ce----EEecCCCcHHHHHHHHHcCcchhccCCHHHHHHHHHHhCCeeecchhhC
Confidence            8887             4454    22    5689999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcccceEEEEEEcCeeEEEEeecCCC
Q psy14945        330 EPAHLGYAGSVFEHVLGEEKFTFVEECKNP  359 (629)
Q Consensus       330 ~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~  359 (629)
                      ++..+|+|+.+++.+++++++++|++|++|
T Consensus       123 ~~~~LG~~~~v~~~~~g~~~~~~~~gc~np  152 (152)
T d1a6db2         123 SSSDLGTAERVEQVKVGEDYMTFVTGCKNP  152 (152)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEESSS
T ss_pred             CcccCcCceEEEEEEECCEEEEEEeCCCCC
Confidence            999999999999999999999999999875

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.91  E-value=1.1e-24  Score=202.41  Aligned_cols=152  Identities=29%  Similarity=0.468  Sum_probs=141.7

Q ss_pred             EEeEEEeccCCCCCCcccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhCCCchH
Q psy14945        168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTGDGTTS  247 (629)
Q Consensus       168 i~Gvv~~~~~~~~~m~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~GDGTt~  247 (629)
                      ++|++|+++..|+.||++++||||++++++|++++++.+.         ++.+++..++..++.+|++++++.       
T Consensus         1 i~Gvv~~k~~~~~~mp~~i~~~kI~ll~~~Le~~k~~~~~---------~i~i~~~~~l~~~~~~E~~~l~~~-------   64 (152)
T d1assa_           1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEA---------KVQISDPSKIQDFLNQETNTFKQM-------   64 (152)
T ss_dssp             CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHH---------HHHTSCGGGHHHHHHHHHHHHHHH-------
T ss_pred             CeEEEEeCccCCCCCCccccCceEEEEecccccccccccc---------eeeeCCHHHHHHHHHHHHHHHHHH-------
Confidence            5799999999999999999999999999999999988776         788889999999999999999999       


Q ss_pred             HHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCccccccc
Q psy14945        248 TVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVE  327 (629)
Q Consensus       248 Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i~~s~~  327 (629)
                       +..|.             ..++    .+    ++++++|++.+++||+++||++++++++++++|||++|||+++++++
T Consensus        65 -v~~I~-------------~~g~----nv----vl~~~~I~~~a~~~l~k~gI~~v~~v~~~dl~ria~atGa~iv~s~~  122 (152)
T d1assa_          65 -VEKIK-------------KSGA----NV----VLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLD  122 (152)
T ss_dssp             -HHHHH-------------HTTC----SE----EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTT
T ss_pred             -HHHHH-------------hccc----ce----EEEeccccHHHHHHHHHcCCccccCCCHHHHHHHHHHhCCceeCCcc
Confidence             88887             4554    22    56899999999999999999999999999999999999999999999


Q ss_pred             ccCcCCCcccceEEEEEEcCeeEEEEeecC
Q psy14945        328 GLEPAHLGYAGSVFEHVLGEEKFTFVEECK  357 (629)
Q Consensus       328 ~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~  357 (629)
                      +++++.+|+|+.+++.+++++++++|+||+
T Consensus       123 ~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk  152 (152)
T d1assa_         123 DLTPSVLGEAETVEERKIGDDRMTFVMGCK  152 (152)
T ss_dssp             SCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred             cCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence            999999999999999999999999999885

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.90  E-value=5.7e-24  Score=212.30  Aligned_cols=187  Identities=28%  Similarity=0.457  Sum_probs=159.4

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcE
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGII  301 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~  301 (629)
                      ..||.++++.+..+.|+.++|||||+++.+.+++|+++..+|..                    |+++..          
T Consensus        53 ~~~~~a~~~~~~~~~~~~~~GDGttt~~vl~~~ll~~~~~~i~~--------------------G~~p~~----------  102 (243)
T d1a6db1          53 VEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQ--------------------NVHPTV----------  102 (243)
T ss_dssp             CCSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHT--------------------TCCHHH----------
T ss_pred             ccchHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHc--------------------CCCHHH----------
Confidence            46999999999999999999999999999999999999987643                    332210          


Q ss_pred             EEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHH
Q psy14945        302 ALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAV  381 (629)
Q Consensus       302 vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i  381 (629)
                                                                                             ..+..++..
T Consensus       103 -----------------------------------------------------------------------I~~g~~~a~  111 (243)
T d1a6db1         103 -----------------------------------------------------------------------ISEGYRMAS  111 (243)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   012234444


Q ss_pred             HhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhc
Q psy14945        382 RDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG  461 (629)
Q Consensus       382 ~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~  461 (629)
                      +++.+.++....+..+++|||++|+.++..+.+++.++++.+|+++++|++||+.||++|++|+|+|+.+++.+|+..|.
T Consensus       112 ~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~  191 (243)
T d1a6db1         112 EEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHA  191 (243)
T ss_dssp             HHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHh
Confidence            44555555555556688999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       462 ~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      . ++.++|+|..+|.+.|+.+.|||||+.||+++++.|+++|...+.|+
T Consensus       192 ~-~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD  239 (243)
T d1a6db1         192 K-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRID  239 (243)
T ss_dssp             T-TCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             C-CCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 66788999999999999999999999999999999999988776654

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.83  E-value=1.6e-21  Score=194.89  Aligned_cols=186  Identities=35%  Similarity=0.524  Sum_probs=155.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcE
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGII  301 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~  301 (629)
                      ..||.++++++..+.|+.++|||||+++.+.+++|+++..|+..                    |+++.           
T Consensus        57 ~~~~~a~~~~~~~~~~~~~~GDGttt~ivla~~ll~~~~~ll~~--------------------G~~p~-----------  105 (245)
T d1a6da1          57 VEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQ--------------------GVHPT-----------  105 (245)
T ss_dssp             CCSHHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHH--------------------TCCHH-----------
T ss_pred             hhhHHHHHHHHHHHhhHHhhcccchhhHHHHHHHHHHHHHHHHC--------------------CCCch-----------
Confidence            46999999999999999999999999999999999999998754                    22220           


Q ss_pred             EEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHH
Q psy14945        302 ALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAV  381 (629)
Q Consensus       302 vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i  381 (629)
                                                                                            .+.+..+..+
T Consensus       106 ----------------------------------------------------------------------~i~~g~~~a~  115 (245)
T d1a6da1         106 ----------------------------------------------------------------------VISNGYRLAV  115 (245)
T ss_dssp             ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred             ----------------------------------------------------------------------hhhhhHHHHH
Confidence                                                                                  0011123333


Q ss_pred             HhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhc
Q psy14945        382 RDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG  461 (629)
Q Consensus       382 ~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~  461 (629)
                      ++++..++...+ +.+++|||+.|++++..+.+++.++++.+++++++|++||+.||++|++|+|+|+++++.+++..|.
T Consensus       116 ~~a~~~L~~~a~-~~~v~g~ga~e~~l~~~l~~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNaG~D~i~iv~~l~~~~~  194 (245)
T d1a6da1         116 NEARKIIDEIAE-KSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDE  194 (245)
T ss_dssp             HHHHHHHHHHCE-ECEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc-ceeecCchhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhccCCCCchhhhhhhhcccc
Confidence            444444433322 4488999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             CCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEEe
Q psy14945        462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVIT  510 (629)
Q Consensus       462 ~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV~  510 (629)
                      + ++.++|+++.++.+.|+.+.|||||+.||+++++.|+++|...+.|+
T Consensus       195 ~-~~~~~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD  242 (245)
T d1a6da1         195 K-GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRID  242 (245)
T ss_dssp             T-TCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             c-CCceeeEEccCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhc
Confidence            5 56789999999999999999999999999999999999988766554

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.83  E-value=3.7e-21  Score=191.72  Aligned_cols=107  Identities=19%  Similarity=0.270  Sum_probs=99.9

Q ss_pred             cCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHH
Q psy14945        502 SGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQD  581 (629)
Q Consensus       502 ~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~  581 (629)
                      .+....+++|||++| ++++..|++++.++++++|++++                  +|++||++||++||+|||+|+.+
T Consensus       121 ~a~~v~~~~ggGa~e-~~~a~~l~~~a~~~~g~~q~~i~------------------~~a~Ale~ip~~LaeNaG~d~~~  181 (243)
T d1a6db1         121 ISTKIAYAAGGGATA-AEIAFRLRSYAQKIGGRQQLAIE------------------KFADAIEEIPRALAENAGLDPID  181 (243)
T ss_dssp             HCEECEEEETTTHHH-HHHHHHHHHHHHHTCSSHHHHHH------------------HHHHHHTHHHHHHHHHHTCCHHH
T ss_pred             hccccccccCCCchh-HHHHHHHhhhhhccCCHHHHHHH------------------HHHHHhhccCccccccCCCChhH
Confidence            345788999999999 99999999999999999999999                  47777888999999999999999


Q ss_pred             HHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        582 TLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       582 ~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      ++.+||..|.+ ++.++|+|+.+|++.||.+.|||||+.||+|+|++
T Consensus       182 ~i~~l~~~h~~-~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~  227 (243)
T d1a6db1         182 ILLKLRAEHAK-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIES  227 (243)
T ss_dssp             HHHHHHHHHHT-TCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCceeEECcCCEEeehHhcccEecHHHHHHHHHH
Confidence            99999999987 77899999999999999999999999999999975

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.74  E-value=2.3e-18  Score=173.01  Aligned_cols=185  Identities=33%  Similarity=0.502  Sum_probs=147.0

Q ss_pred             ccccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcE
Q psy14945        222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGII  301 (629)
Q Consensus       222 ~~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~  301 (629)
                      ..||.++++.+..+.|++++|||||+++.+++++|+++..+++.                    |+++...         
T Consensus        66 ~~~~~a~~~~~~a~~~~~~~GDGttt~~vLa~~ll~~~~~li~~--------------------G~~p~~i---------  116 (258)
T d1q3qa1          66 LQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQ--------------------NIHPSII---------  116 (258)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHT--------------------TCCHHHH---------
T ss_pred             hhHHHHHHHHHHHHHHHHHHccccchhHHhHHHHHhhhHHHHhc--------------------CCChhHH---------
Confidence            36999999999999999999999999999999999999998754                    1211100         


Q ss_pred             EEeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHH
Q psy14945        302 ALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAV  381 (629)
Q Consensus       302 vv~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i  381 (629)
                                                                                              .+.++...
T Consensus       117 ------------------------------------------------------------------------~~g~~~a~  124 (258)
T d1q3qa1         117 ------------------------------------------------------------------------TKGYALAA  124 (258)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    00001111


Q ss_pred             HhhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhc
Q psy14945        382 RDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG  461 (629)
Q Consensus       382 ~dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~  461 (629)
                      ++++..++....+ .++|+||+.|++.+..+.+++..+.+.++++++.|++||+.+|+++++|+|+|+++++.+++..|.
T Consensus       125 ~~~~~~l~~~~~~-~~~~~~g~~ei~~a~~l~~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~  203 (258)
T d1q3qa1         125 EKAQEILDEIAIR-AVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHK  203 (258)
T ss_dssp             HHHHHHHHHHCEE-EEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-hccCCCchHHHHHHHHHHhhhcccchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcc
Confidence            1111111111111 267999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEE
Q psy14945        462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVI  509 (629)
Q Consensus       462 ~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV  509 (629)
                      . ++.+.|++..+|.+.|+.++|+|||+.|+.++++.|++++...+.+
T Consensus       204 ~-~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~i  250 (258)
T d1q3qa1         204 N-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRI  250 (258)
T ss_dssp             H-HCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTC
T ss_pred             c-CCCceEEEEECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeE
Confidence            4 4567899999999999999999999999999999888877554443

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.71  E-value=3e-18  Score=170.93  Aligned_cols=104  Identities=20%  Similarity=0.282  Sum_probs=97.2

Q ss_pred             CCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHH
Q psy14945        505 HPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLV  584 (629)
Q Consensus       505 ~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~  584 (629)
                      .+.+++|||+.| ++++..|.+++.+.++++|++++                  +|++||+.||++||+|+|+|+++++.
T Consensus       127 ~~~~v~g~ga~e-~~l~~~l~~~a~~~~g~eq~a~~------------------~~a~Ale~ip~~laeNaG~D~i~iv~  187 (245)
T d1a6da1         127 EKSFLWGGGAVE-AELAMRLAKYANSVGGREQLAIE------------------AFAKALEIIPRTLAENAGIDPINTLI  187 (245)
T ss_dssp             EECEEETTTHHH-HHHHHHHHHHHHTSCHHHHHHHH------------------HHHHHHTHHHHHHHHHHTSCHHHHHH
T ss_pred             cceeecCchhHH-HHHHHHHHHHHhccCCHHHHHHH------------------HHHHHHhhhhhhhhccCCCCchhhhh
Confidence            578999999999 99999999999999999999998                  46677888999999999999999999


Q ss_pred             HHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        585 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       585 ~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +|+..|.+ ++.++|+|+.+|.+.||.+.|||||+.||+|+|++
T Consensus       188 ~l~~~~~~-~~~~~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~  230 (245)
T d1a6da1         188 KLKADDEK-GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALES  230 (245)
T ss_dssp             HHHHHHHT-TCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHH
T ss_pred             hhhccccc-CCceeeEEccCCeEeehHhcCccccHHHHHHHHHH
Confidence            99999987 67899999999999999999999999999999975

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.7e-15  Score=151.64  Aligned_cols=183  Identities=21%  Similarity=0.316  Sum_probs=153.1

Q ss_pred             cccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEE
Q psy14945        223 QHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIA  302 (629)
Q Consensus       223 ~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~v  302 (629)
                      .|+.++++.+....+++..|||||+.+.++.++++++..++.                    .|.++             
T Consensus        65 e~~~a~~~~~~~~~~~~~~gDgttt~~vl~~~~l~~~~~~i~--------------------~G~~~-------------  111 (255)
T d1we3a1          65 ENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVA--------------------AGANP-------------  111 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH--------------------TTCCH-------------
T ss_pred             hhhHHHHHHHhhhhhHHHhhcchhHHHHHHHHHHHhhhhHHh--------------------cCCcc-------------
Confidence            588999999999999999999999999998876654444321                    11111             


Q ss_pred             EeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHH
Q psy14945        303 LRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVR  382 (629)
Q Consensus       303 v~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~  382 (629)
                                                                                          ....+++++++.
T Consensus       112 --------------------------------------------------------------------~~i~~g~~~a~~  123 (255)
T d1we3a1         112 --------------------------------------------------------------------LALKRGIEKAVE  123 (255)
T ss_dssp             --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred             --------------------------------------------------------------------chhhhhhhhhhH
Confidence                                                                                123556889999


Q ss_pred             hhHHHHHHHhhCCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC
Q psy14945        383 DGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE  462 (629)
Q Consensus       383 dal~vv~~~~~~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~  462 (629)
                      ++++.++...++..++||||+.++.++..+..+.....+.+++++++|++||+.||+++++|+|+++..........+  
T Consensus       124 ~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~--  201 (255)
T d1we3a1         124 AAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAET--  201 (255)
T ss_dssp             HHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeecc--
Confidence            999999988888889999999999999999988888888899999999999999999999999999988777766544  


Q ss_pred             CCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCCCeEE
Q psy14945        463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVI  509 (629)
Q Consensus       463 ~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~~~iV  509 (629)
                       .+.++|++..+|.+.|+.++||+||+.|++++++.|++++...+++
T Consensus       202 -~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~  247 (255)
T d1we3a1         202 -KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTT  247 (255)
T ss_dssp             -SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred             -cCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHHHHhchHhhc
Confidence             2356899999999999999999999999999999888876654443

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.54  E-value=5.5e-15  Score=140.03  Aligned_cols=171  Identities=23%  Similarity=0.324  Sum_probs=123.7

Q ss_pred             cccHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEE
Q psy14945        223 QHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIA  302 (629)
Q Consensus       223 ~~~~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~v  302 (629)
                      .|.-++|+.+.+..+++++|||||+.+.+..+++.++..++..                    |.++.            
T Consensus         4 e~~ga~lv~~~a~~~~~~~GDGTTTatVLa~~i~~e~~~~i~~--------------------g~~p~------------   51 (180)
T d1sjpa1           4 EKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAA--------------------GANPL------------   51 (180)
T ss_dssp             HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHT--------------------TCCHH------------
T ss_pred             hhHhHHHHHHHHHhhHHHcCCCchHHHHHHHHHHHHHHHHhhC--------------------CCChH------------
Confidence            4678999999999999999999999999999888777665432                    12110            


Q ss_pred             EeccchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHH
Q psy14945        303 LRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVR  382 (629)
Q Consensus       303 v~~v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~  382 (629)
                                                                                               ++++.++
T Consensus        52 -------------------------------------------------------------------------~i~~Gi~   58 (180)
T d1sjpa1          52 -------------------------------------------------------------------------GLKRGIE   58 (180)
T ss_dssp             -------------------------------------------------------------------------HHHHHHH
T ss_pred             -------------------------------------------------------------------------HHHhhHH
Confidence                                                                                     2233444


Q ss_pred             hhHHHHHHHhhCC-CcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhc
Q psy14945        383 DGLRAIKNTIDDG-AVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG  461 (629)
Q Consensus       383 dal~vv~~~~~~~-~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~  461 (629)
                      ++...+...+++. ..++|||...+.....+.  +....+.+++++++|++||+.|++++++|+|.++..++.+++..+ 
T Consensus        59 ~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~--~~~~~~~e~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~~~~~~~~-  135 (180)
T d1sjpa1          59 KAVEKVTETLLKGAKIVAGGGVTLLQAAPTLD--ELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP-  135 (180)
T ss_dssp             HHHHHHHHHHHHTCBEEETTTTTTTTTGGGGG--GSCCCTHHHHHHHHHHHHTTHHHHHHHHTTTSCHHHHHHHHHTSC-
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhccc-
Confidence            4444444444433 467888877665443332  234566799999999999999999999999999999998886532 


Q ss_pred             CCCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcCCC
Q psy14945        462 EAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLH  505 (629)
Q Consensus       462 ~~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a~~  505 (629)
                          .++|+|..++.+.|+++.||+||..|++++|+.|+++|..
T Consensus       136 ----~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~  175 (180)
T d1sjpa1         136 ----AGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGL  175 (180)
T ss_dssp             ----TTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHH
T ss_pred             ----cccCccccccccccHHHcCCcCcHHHHHHHHHhHHHHHHH
Confidence                4689999999999999999999999999999999987754

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.49  E-value=1.2e-14  Score=145.66  Aligned_cols=104  Identities=21%  Similarity=0.328  Sum_probs=95.0

Q ss_pred             CCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHH
Q psy14945        505 HPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLV  584 (629)
Q Consensus       505 ~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~  584 (629)
                      ...++|+||+.| ++.+..+..++....+.++++++                  +|++||+.||++|++|+|+|+++++.
T Consensus       136 ~~~~~~~~g~~e-i~~a~~l~~~a~~~~~~~~~a~~------------------~~a~Al~~Ip~~la~N~G~d~i~~v~  196 (258)
T d1q3qa1         136 IRAVLPAGGAPE-IELAIRLDEYAKQVGGKEALAIE------------------NFADALKIIPKTLAENAGLDTVEMLV  196 (258)
T ss_dssp             EEEEEECTTHHH-HHHHHHHHHHHHHHCHHHHHHHH------------------HHHHHTTHHHHHHHHHTTCCHHHHHH
T ss_pred             hhhccCCCchHH-HHHHHHHHhhhcccchHHHHHHH------------------HHHHhccchhhhhhhhcCCccceehh
Confidence            346789999999 99999999999999999999888                  46777888999999999999999999


Q ss_pred             HHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhhc
Q psy14945        585 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS  628 (629)
Q Consensus       585 ~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~~  628 (629)
                      +|+..|.. ++.++|+|+.+|.+.||.+.|||||+.||.|++++
T Consensus       197 ~l~~~~~~-~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~  239 (258)
T d1q3qa1         197 KVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS  239 (258)
T ss_dssp             HHHHHHHH-HCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred             hhhhhccc-CCCceEEEEECCEEeEchHcCccccHHHHHHHHHH
Confidence            99999976 57889999999999999999999999999999864

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=5.9e-13  Score=132.85  Aligned_cols=105  Identities=16%  Similarity=0.258  Sum_probs=92.9

Q ss_pred             hcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHH
Q psy14945        501 ISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQ  580 (629)
Q Consensus       501 e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~  580 (629)
                      +.+....++||||+.+ ..++..++.++...++++|++++++++|                  |+.+|+++++|+|+++.
T Consensus       131 ~~~~~~~~v~ggg~~~-~~~~~~~~~~~~~~~g~~~~g~~iva~A------------------l~~~~~~~~~nag~~~~  191 (255)
T d1we3a1         131 ALAIPVGIVPGGGVTL-LRAISAVEELIKKLEGDEATGAKIVRRA------------------LEEPARQIAENAGYEGS  191 (255)
T ss_dssp             HTCBCCCEEETTTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTHHHHHHHHHHTSCHH
T ss_pred             HHhhhcceeccchhhh-hhhhhhhHhhccCCChHHHHHHHHHHHH------------------HhhhHHHHHhhcccccc
Confidence            4456889999999999 9999999999999999999999965554                  55588999999999999


Q ss_pred             HHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        581 DTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       581 ~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                      .++.++...|   .+.++|+|+.+|.+.||.+.|||||+.|+.++++
T Consensus       192 ~~~~~~~~~~---~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~  235 (255)
T d1we3a1         192 VIVQQILAET---KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQ  235 (255)
T ss_dssp             HHHHHHHHCC---SCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHH
T ss_pred             eeeeeeeecc---cCCceeEEeeccEEeehhhcCCcCchHhhHHHHH
Confidence            9988887766   3467999999999999999999999999999986

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.26  E-value=1.1e-12  Score=123.91  Aligned_cols=113  Identities=16%  Similarity=0.249  Sum_probs=86.6

Q ss_pred             ccccchhhHHHHHhhhhhhcCCCCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCC
Q psy14945        483 AGIYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPN  562 (629)
Q Consensus       483 ~~I~D~~~Vk~~~l~~a~e~a~~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~  562 (629)
                      +|+.++.......|+      .....++|||... ..+...+..  .+.+++++.++++++.||+.              
T Consensus        55 ~Gi~~A~~~v~~~L~------~~a~~v~g~~~~~-l~a~~al~~--~~~~~~e~~g~~i~~~Al~~--------------  111 (180)
T d1sjpa1          55 RGIEKAVEKVTETLL------KGAKIVAGGGVTL-LQAAPTLDE--LKLEGDEATGANIVKVALEA--------------  111 (180)
T ss_dssp             HHHHHHHHHHHHHHH------HTCBEEETTTTTT-TTTGGGGGG--SCCCTHHHHHHHHHHHHTTH--------------
T ss_pred             hhHHHHHHHHHHHHH------HHHhhhcchhhhH-HHHHHHHhh--hhhhhHHHHHHHHHHHHHHH--------------
Confidence            344444444444444      3557899888766 554444443  35678899999987766665              


Q ss_pred             chhHHHHHhHHhcCCCHHHHHHHHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        563 SVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       563 al~~IP~~La~NaG~d~~~~l~~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                          +|++|++|||+|+..++.+++..     ..++|+|..+|+++||++.||+||++|+++||+
T Consensus       112 ----p~~~I~~NaG~~~~~v~~~~~~~-----~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~  167 (180)
T d1sjpa1         112 ----PLKQIAFNSGLEPGVVAEKVRNL-----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQ  167 (180)
T ss_dssp             ----HHHHHHHTTTSCHHHHHHHHHTS-----CTTEECCTTTCCCEETTTTTCEEEHHHHHHHHH
T ss_pred             ----HHHHHHHhcCCCchhhhhhhhcc-----ccccCccccccccccHHHcCCcCcHHHHHHHHH
Confidence                66999999999999999998643     357999999999999999999999999999986

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=99.17  E-value=4.7e-12  Score=118.23  Aligned_cols=74  Identities=24%  Similarity=0.353  Sum_probs=58.8

Q ss_pred             CceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCC---cccCc-chhhhHHHhcCchhhhhhhhccccc
Q psy14945         14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP---WCATP-GHAQVREERAHPDMQHQHGIREEGV   87 (629)
Q Consensus        14 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~---~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~   87 (629)
                      ||+||+|+|+|+...|++||++++||+||++|++|||+|++.++   +.+.+ .+++.+.|+++++++++++..-+.-
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~   78 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD   78 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            89999999999999999999999999999999999999999665   44544 4999999999999999998765443

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.03  E-value=5.9e-11  Score=108.91  Aligned_cols=70  Identities=27%  Similarity=0.333  Sum_probs=61.3

Q ss_pred             eEEEecCCCCCCCCcccccceEEEEeecccceeccCCCC---ccc-CcchhhhHHHhcCchhhhhhhhcccccc
Q psy14945         19 KGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP---WCA-TPGHAQVREERAHPDMQHQHGIREEGVV   88 (629)
Q Consensus        19 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~---~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~   88 (629)
                      ||+|+||...|++||++++||+||++|++|||+|++.+.   +.+ ++.+++.++|+++++++++++..-+.-+
T Consensus         1 kGvv~~k~~~~~~mp~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nv   74 (153)
T d1q3qa2           1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANV   74 (153)
T ss_dssp             SSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             CeEEEeCCCCCccCCcccCCccEEEEecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            799999999999999999999999999999999999655   555 4449999999999999998887655444

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.01  E-value=1.2e-10  Score=106.66  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             EEEecCCCCCCCCcccccceEEEEeecccceeccCCCC---cccCcc-hhhhHHHhcCchhhhhhhhcccccc
Q psy14945         20 GVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP---WCATPG-HAQVREERAHPDMQHQHGIREEGVV   88 (629)
Q Consensus        20 g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~---~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~   88 (629)
                      |+|+|++..|++|||+++||+||++|++|||+|++.+.   +.+.+. ++..++|+++++++++++..-+.-+
T Consensus         1 Gvv~~k~~~~~~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nv   73 (152)
T d1a6db2           1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANV   73 (152)
T ss_dssp             EEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CEEEeccCCCCCCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCce
Confidence            89999999999999999999999999999999999655   556444 9999999999999999887655433

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=98.96  E-value=9.9e-11  Score=107.26  Aligned_cols=71  Identities=21%  Similarity=0.266  Sum_probs=62.2

Q ss_pred             EeEEEecCCCCCCCCcccccceEEEEeecccceeccCCCC---cccCcc-hhhhHHHhcCchhhhhhhhcccccc
Q psy14945         18 VKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGP---WCATPG-HAQVREERAHPDMQHQHGIREEGVV   88 (629)
Q Consensus        18 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~~~~---~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~   88 (629)
                      |+|+|+|+...|++||++++||+|+++|++|||+|++.++   +.+.+. ++..+.|+++++++++++..-+.-+
T Consensus         1 i~Gvv~~k~~~~~~mp~~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~nv   75 (152)
T d1assa_           1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANV   75 (152)
T ss_dssp             CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             CeEEEEeCccCCCCCCccccCceEEEEecccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcccce
Confidence            6899999999999999999999999999999999998544   666444 9999999999999999988655433

>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=98.95  E-value=3e-11  Score=104.07  Aligned_cols=95  Identities=9%  Similarity=-0.037  Sum_probs=74.3

Q ss_pred             HHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCC
Q psy14945        102 VKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARH  179 (629)
Q Consensus       102 ~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~  179 (629)
                      +.++. .|+.++|..+  .++|+.++|+|+..-.-..     ......++.+++|.+++||++.||++++|++|++   |
T Consensus         9 L~~va-~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~-----~~~~~~d~~~Iki~K~~Ggsv~dS~lv~G~vl~k---~   79 (107)
T d1q3qa3           9 LLKIA-ATSITGKNAESHKELLAKLAVEAVKQVAEKK-----DGKYVVDLDNIKFEKKAGEGVEESELVKAVTILI---R   79 (107)
T ss_dssp             HHHHH-HHHSCSSTTGGGHHHHHHHHHHHHHHHCEES-----SSSEECCGGGEEEEEEEBSCGGGCEEESSEEEEE---E
T ss_pred             HHHHH-HHHhccccchhHHHHHHHHHHHHHHHhhccc-----CCCcccchHHEEEEEecCCChhhCEEEccEEEEc---c
Confidence            44444 5777888876  6899999999998631000     0111346778999999999999999999999997   5


Q ss_pred             CCCcccccCeeEEEeecccccccccc
Q psy14945        180 PDMPKSVKNAHILTCNISMEYEKSSQ  205 (629)
Q Consensus       180 ~~m~~~i~n~kIll~~~~Le~~k~~~  205 (629)
                      +.||+.++|+||+++||+|++...+.
T Consensus        80 ~~mp~~i~n~ki~lld~~le~~~~~~  105 (107)
T d1q3qa3          80 GGTEHVIDEVERALEDAVKVVKDVME  105 (107)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCcCEeeccCcHHHHhhcc
Confidence            78999999999999999999865543

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.95  E-value=1.1e-09  Score=108.39  Aligned_cols=103  Identities=22%  Similarity=0.229  Sum_probs=84.7

Q ss_pred             cccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcCCCCceEEEEeccCC
Q psy14945        397 VVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGE  476 (629)
Q Consensus       397 VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~~~~~~~Gid~~t~~  476 (629)
                      +++|||...+.++..+... ....+.++.++..+.+|++.+.+.+++|+|.++..++++....    ...+.|+++.+++
T Consensus       137 i~~~g~~al~~~~~~l~~~-~~~~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~~----~~~~~g~~~~~~~  211 (252)
T d1ioka1         137 IVVGGGVALVQGAKVLEGL-SGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRES----SDKAFGFNAQTEE  211 (252)
T ss_dssp             EEETTTHHHHHHGGGGGSC-CCSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSC----CSTTEEEETTTTE
T ss_pred             CCCchHHhhHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeeccc----CcCCEEEEceeee
Confidence            8899999888776555332 1223457899999999999999999999999999999887543    2357899999999


Q ss_pred             CCCCCcccccchhhHHHHHhhhhhhcCC
Q psy14945        477 VLNPTSAGIYDNLTVKRQIINSWIISGL  504 (629)
Q Consensus       477 i~d~~e~~I~D~~~Vk~~~l~~a~e~a~  504 (629)
                      +.|++++||.||+.|.+.+|+.|++.+.
T Consensus       212 ~g~~~~~GiidP~kVt~~al~~A~sva~  239 (252)
T d1ioka1         212 YGDMFKFGVIDPAKVVRTALEDAASVAG  239 (252)
T ss_dssp             EEEHHHHTCEEEHHHHHHHHHHHHHHHH
T ss_pred             EeeeecccccCcHHHHHHHHHHHHhhhh
Confidence            9999999999999999999998875543

>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=98.88  E-value=1.2e-10  Score=99.72  Aligned_cols=95  Identities=11%  Similarity=0.001  Sum_probs=73.7

Q ss_pred             HHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEEeccCCC
Q psy14945        102 VKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARH  179 (629)
Q Consensus       102 ~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~~~~~~~  179 (629)
                      +..+. .|+.++|..+  .++|+.++|+|+..-.-.+  |   .....++.+|+|.+++||++.||++++|+++++   |
T Consensus         6 L~~va-~Tsl~~K~~~~~~d~ls~l~vdAv~~v~~~~--~---g~~~~d~~~I~i~k~~Ggs~~dS~lv~G~vl~k---~   76 (105)
T d1a6da3           6 LRKIA-LTALSGKNTGLSNDFLADLVVKAVNAVAEVR--D---GKTIVDTANIKVDKKNGGSVNDTQFISAVSILI---R   76 (105)
T ss_dssp             HHHHH-HHHTTTSSCCSTHHHHHHHHHHHHHHHCEES--S---SSEECCGGGEEEEECCCSCSTTCEEESCEEEEE---C
T ss_pred             HHHHH-HHhhccccchHHHHHHHHHHHHHHHHhcccc--C---CCceecHHHhhhhhccCCChhheeeeeccceec---c
Confidence            34444 5777888875  5889999999987521000  0   011356788999999999999999999999986   6


Q ss_pred             CCCcccccCeeEEEeecccccccccc
Q psy14945        180 PDMPKSVKNAHILTCNISMEYEKSSQ  205 (629)
Q Consensus       180 ~~m~~~i~n~kIll~~~~Le~~k~~~  205 (629)
                      +.||+.++|+||++++++++..+++.
T Consensus        77 ~~mp~~~~~~kialld~~~~~~~te~  102 (105)
T d1a6da3          77 GGTDHVVSEVERALNDAIRVVAITKE  102 (105)
T ss_dssp             CSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCcCeeEecchhhcccccc
Confidence            89999999999999999998866654

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.4e-08  Score=100.39  Aligned_cols=166  Identities=19%  Similarity=0.281  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEec
Q psy14945        226 TASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRR  305 (629)
Q Consensus       226 ~akll~~e~~~~~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~  305 (629)
                      .++++.+.+..+++.+|||||+++.+..++|+++..++..                    |+++..              
T Consensus        69 ~a~~~~~~a~~~~~~~GDgttt~~vla~~ll~~~~~~i~~--------------------G~~p~~--------------  114 (252)
T d1kp8a1          69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAA--------------------GMNPMD--------------  114 (252)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHT--------------------TCCHHH--------------
T ss_pred             HHHHHHHHHHhhhHHhccccchhHHHHHHHHHHHHHHHHc--------------------CCcchh--------------
Confidence            7889999999999999999999999999988777775532                    222200              


Q ss_pred             cchhhHHHHHHHhCCcccccccccCcCCCcccceEEEEEEcCeeEEEEeecCCCccEEEEecCCCccCHHHHHHHHHhhH
Q psy14945        306 AKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGL  385 (629)
Q Consensus       306 v~~~dl~rIak~tGg~i~~s~~~l~~~~lG~~~~v~e~~i~~~~~~~~~~~~~~~~~TIll~g~~~~~l~e~~r~i~dal  385 (629)
                                                                                             +++.+..+.
T Consensus       115 -----------------------------------------------------------------------i~~gi~~a~  123 (252)
T d1kp8a1         115 -----------------------------------------------------------------------LKRGIDKAV  123 (252)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------hhhhhhhHH
Confidence                                                                                   222333333


Q ss_pred             HHHHHHhh---CCCcccCCChHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhhhhHHHHHhcCCChHHHHHHHHHhhcC
Q psy14945        386 RAIKNTID---DGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE  462 (629)
Q Consensus       386 ~vv~~~~~---~~~VV~GGG~~El~l~~~L~~~~~~i~~~~k~~i~~fa~ALe~ip~~L~~NaG~d~~~vl~~L~~~~~~  462 (629)
                      ..+...++   .+ +.+|++....+.+..+.... ...+.++.+...+.+||+.+.+++++|+|.++..++..+....  
T Consensus       124 ~~v~~~L~~~s~~-i~~~~~~~~v~~~~~~~~~k-~~n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~~~--  199 (252)
T d1kp8a1         124 TVAVEELKALSVG-VVAGGGVALIRVASKLADLR-GQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGD--  199 (252)
T ss_dssp             HHHHHHHHHHCBC-EEETTTHHHHHHHHHTTTCC-CSSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHSC--
T ss_pred             HHHHHHHHhccee-eccCchhhhhHHHHHhhhhc-ccCccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeeecC--
Confidence            33333332   24 78888888887765553222 1234578999999999999999999999999999888876432  


Q ss_pred             CCCceEEEEeccCCCCCCCcccccchhhHHHHHhhhhhhcC
Q psy14945        463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISG  503 (629)
Q Consensus       463 ~~~~~~Gid~~t~~i~d~~e~~I~D~~~Vk~~~l~~a~e~a  503 (629)
                         ...|++..++.+.+++++|+.||+.|.+.+++.|...+
T Consensus       200 ---~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~  237 (252)
T d1kp8a1         200 ---GNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVA  237 (252)
T ss_dssp             ---TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHH
T ss_pred             ---CCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheecc
Confidence               35799999999999999999999999999998766443

>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=98.84  E-value=4.6e-11  Score=102.38  Aligned_cols=51  Identities=6%  Similarity=-0.021  Sum_probs=49.0

Q ss_pred             CceEeecCCCCCCCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccC
Q psy14945          1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSG   54 (629)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~   54 (629)
                      +|+|+|++|++.+||+||+|+||++   ||+||++++||+|+++++.||+.++|
T Consensus        51 ~I~i~k~~Ggs~~dS~lv~G~vl~k---~~~mp~~~~~~kialld~~~~~~~te  101 (105)
T d1a6da3          51 NIKVDKKNGGSVNDTQFISAVSILI---RGGTDHVVSEVERALNDAIRVVAITK  101 (105)
T ss_dssp             GEEEEECCCSCSTTCEEESCEEEEE---CCSSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhccCCChhheeeeeccceec---cCCCCcccCCcCeeEecchhhccccc
Confidence            5899999999999999999999987   99999999999999999999999987

>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=98.72  E-value=2e-10  Score=98.66  Aligned_cols=91  Identities=12%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             HHHHhHhhhhcccccc--hhhHHHHHHHHHhhhcCCCCCCCCCccccccccceeEEEecCCCccceEEEEeEEE-----e
Q psy14945        102 VKNAHILTCNISMEYE--KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVL-----N  174 (629)
Q Consensus       102 ~~~~~~~~~~~s~~~~--~~~i~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~i~i~~i~Ggs~~dS~li~Gvv~-----~  174 (629)
                      +..+. .|+.+||-.+  .++|+.++|+|+..-....     ......++.+|+|.+++||++.||+|++|+++     +
T Consensus         8 L~~va-~Tsl~~K~~~~~~d~la~l~v~Av~~v~~~~-----~~~~~~d~~~IkI~k~~Ggs~~dS~li~G~v~~~~~~~   81 (107)
T d1a6db3           8 LLKMA-QTSLNSKSASVAKDKLAEISYEAVKSVAELR-----DGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRGE   81 (107)
T ss_dssp             HHHHH-HHHHTTSGGGGGHHHHHHHHHHHHHHHEEEC-----SSSEEECGGGEEEEEEESSCGGGCEEESSCEEEEEEES
T ss_pred             HHHHH-HHhhcccccchHHHHHHHHHHHHHHHhhccc-----CCCcccCHHHeEEEeecCCChhhcEEEeccceeeccCC
Confidence            44444 5677887765  5789999999997521000     00113456789999999999999999999777     4


Q ss_pred             ccCCCCCCcccccCeeEEEeecccc
Q psy14945        175 HGARHPDMPKSVKNAHILTCNISME  199 (629)
Q Consensus       175 ~~~~~~~m~~~i~n~kIll~~~~Le  199 (629)
                      +...+++||++++|+ |+|++|+||
T Consensus        82 k~~~~~~Mpk~i~n~-I~lld~~LE  105 (107)
T d1a6db3          82 TEHVVDEMERSITDS-LHVVASALE  105 (107)
T ss_dssp             SHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             ceeccCCCCccccCc-EEEEecCCc
Confidence            445568999999998 999999996

>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=98.66  E-value=1.5e-10  Score=99.60  Aligned_cols=51  Identities=10%  Similarity=-0.007  Sum_probs=48.1

Q ss_pred             CceEeecCCCCCCCceeEeEEEecCCCCCCCCcccccceEEEEeecccceeccC
Q psy14945          1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSG   54 (629)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~k~~   54 (629)
                      +|+|.|+.|++.+||+||+|+||++   ||+||++++||+|+++|+.|||..++
T Consensus        54 ~Iki~K~~Ggsv~dS~lv~G~vl~k---~~~mp~~i~n~ki~lld~~le~~~~~  104 (107)
T d1q3qa3          54 NIKFEKKAGEGVEESELVKAVTILI---RGGTEHVIDEVERALEDAVKVVKDVM  104 (107)
T ss_dssp             GEEEEEEEBSCGGGCEEESSEEEEE---EESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HEEEEEecCCChhhCEEEccEEEEc---cCCCCcccCCcCEeeccCcHHHHhhc
Confidence            4889999999999999999999986   99999999999999999999998765

>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: Group II chaperonin (CCT, TRIC), intermediate domain
domain: Thermosome, I domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=98.56  E-value=2.1e-10  Score=98.54  Aligned_cols=48  Identities=15%  Similarity=0.300  Sum_probs=43.0

Q ss_pred             CceEeecCCCCCCCceeEeEEEe---cCCCCC--CCCcccccceEEEEeecccc
Q psy14945          1 MVELMEMKHKTPGDSCLVKGVVL---DHGARH--PDMPKSVKNAHILTCNISME   49 (629)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~--~~~~~~~~~~~i~~~~~~~e   49 (629)
                      +|+|+|++|++.+||+||+|+|+   +|+.+|  |+|||+++|| |+++|++||
T Consensus        53 ~IkI~k~~Ggs~~dS~li~G~v~~~~~~~k~~~~~~Mpk~i~n~-I~lld~~LE  105 (107)
T d1a6db3          53 NIQVVKKQGGAIDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVVASALE  105 (107)
T ss_dssp             GEEEEEEESSCGGGCEEESSCEEEEEEESSHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HeEEEeecCCChhhcEEEeccceeeccCCceeccCCCCccccCc-EEEEecCCc
Confidence            48999999999999999999555   666665  9999999999 999999998

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.50  E-value=4.2e-08  Score=96.78  Aligned_cols=99  Identities=20%  Similarity=0.291  Sum_probs=80.5

Q ss_pred             CCeEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHH
Q psy14945        505 HPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLV  584 (629)
Q Consensus       505 ~~~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~  584 (629)
                      ...+++|| ..++..++..|.... ..+++++.+++++.+|+.+|+                  +++++|+|.|+..++.
T Consensus       134 a~~i~~~g-~~al~~~~~~l~~~~-~~~~d~~~G~~iv~~Al~~p~------------------~~i~~naG~dg~~vv~  193 (252)
T d1ioka1         134 ARGIVVGG-GVALVQGAKVLEGLS-GANSDQDAGIAIIRRALEAPM------------------RQIAENAGVDGAVVAG  193 (252)
T ss_dssp             CBCEEETT-THHHHHHGGGGGSCC-CSSHHHHHHHHHHHHHTTHHH------------------HHHHHHHTSCHHHHHH
T ss_pred             cCCCCCch-HHhhHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHH------------------HHHHhccCCCcceEEE
Confidence            45677755 555577777665542 345678999999999998876                  7899999999999998


Q ss_pred             HHHHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        585 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       585 ~L~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                      +.+..    ...++|+|..+++++||++.||+||++|++.++.
T Consensus       194 ~~~~~----~~~~~g~~~~~~~~g~~~~~GiidP~kVt~~al~  232 (252)
T d1ioka1         194 KVRES----SDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALE  232 (252)
T ss_dssp             HHHSC----CSTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHH
T ss_pred             eeccc----CcCCEEEEceeeeEeeeecccccCcHHHHHHHHH
Confidence            87653    3468999999999999999999999999998875

>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=98.15  E-value=2.7e-07  Score=86.31  Aligned_cols=130  Identities=15%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             eEEEeccCCCCCC-------cccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhhC
Q psy14945        170 GVVLNHGARHPDM-------PKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMTG  242 (629)
Q Consensus       170 Gvv~~~~~~~~~m-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~G  242 (629)
                      |+-|+++|.+|++       ...++||.|+++|..+.    ..+.++|.|+.+      ..+..+.+++.+.        
T Consensus         1 G~~~d~Gy~Sp~Fvt~~~~~~~~~~~p~ili~d~ki~----~~~~i~p~Le~~------~~~~rPLlIIA~d--------   62 (184)
T d1sjpa2           1 GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVS----TVKDLLPLLEKV------IGAGKPLLIIAED--------   62 (184)
T ss_dssp             EEEESCCBSCGGGCSBTTTTBEEEESCEEEEESSCBC----CSTTTHHHHHHH------HTTTCCEEEEESC--------
T ss_pred             CCccCcCccCcccccCCCCCEEEecCCEEEEecCccC----cHHHHHHHHHHh------hccCCcEEEEcch--------
Confidence            8999999999964       45689999999999994    455666666643      1112222222211        


Q ss_pred             CCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCcc
Q psy14945        243 DGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTA  322 (629)
Q Consensus       243 DGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~i  322 (629)
                       =..-++..+.             .++.++.+.+|++   ...++.+                .++..+++||..|||++
T Consensus        63 -i~~~aL~~Lv-------------~N~~~g~l~v~aV---kaPgfG~----------------~r~~~L~DlA~~TGa~v  109 (184)
T d1sjpa2          63 -VEGEALSTLV-------------VNKIRGTFKSVAV---KAPGFGD----------------RRKAMLQDMAILTGGQV  109 (184)
T ss_dssp             -BCHHHHHHHH-------------HHHHTTSSCCEEE---ECSSCHH----------------HHHHHHHHHHHHHTCCE
T ss_pred             -hhHHHHHHHH-------------HHHhcCchheecc---cCCCCCc----------------chHHHHHHHHHHhCCEE
Confidence             1111133333             2223444556642   2333322                13457999999999999


Q ss_pred             ccc-----ccccCcCCCcccceEEEEEEcCeeEEEE
Q psy14945        323 MNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFV  353 (629)
Q Consensus       323 ~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~  353 (629)
                      ++.     +..++.+.+|+|+++.   +..++.+++
T Consensus       110 i~~~~g~~l~~~~~~~LG~~~kv~---itk~~T~ii  142 (184)
T d1sjpa2         110 ISEEVGLTLENADLSLLGKARKVV---VTKDETTIV  142 (184)
T ss_dssp             EBTTTTBCSSSCCTTTSEEEEEEE---ECSSCEEEE
T ss_pred             ecccccccccccchhhCCeeeEEE---EecCceEEe
Confidence            974     4567778899998776   444444444

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2e-06  Score=84.45  Aligned_cols=96  Identities=18%  Similarity=0.239  Sum_probs=77.6

Q ss_pred             eEEecccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhhhHHHHHhhhccCCchhHHHHHhHHhcCCCHHHHHHHH
Q psy14945        507 RVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKL  586 (629)
Q Consensus       507 ~iV~gGg~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~l~~a~al~~IP~~La~NaG~d~~~~l~~L  586 (629)
                      .+.+||+. ++..++..+.... ..+++++++.+++++||+.|+                  +++++|+|.++.+++.++
T Consensus       136 ~i~~~~~~-~~v~~~~~~~~~k-~~n~d~~iG~~Iv~~Al~~p~------------------~~i~~nag~~g~~~~~~v  195 (252)
T d1kp8a1         136 GVVAGGGV-ALIRVASKLADLR-GQNADQNVGIKVALRAMEAPL------------------RQIVLNCGEEPSVVANTV  195 (252)
T ss_dssp             CEEETTTH-HHHHHHHHTTTCC-CSSHHHHHHHHHHHHHTTHHH------------------HHHHHHHTSCHHHHHHHH
T ss_pred             eeccCchh-hhhHHHHHhhhhc-ccCccHHHhHHHHHHHHHHHH------------------HHHHHhhhhcccccceee
Confidence            45665554 4477776655443 245789999999999999877                  789999999999999988


Q ss_pred             HHHhhcCCCceeeEecCCCcccccccCCccccHHHHHHHhh
Q psy14945        587 QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN  627 (629)
Q Consensus       587 ~~~h~~~~~~~~Gvd~~~g~i~d~~~~gI~dp~~vK~~~i~  627 (629)
                      +..     ..++|+|..++.++||++.|++||+.|...+++
T Consensus       196 ~~~-----~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~  231 (252)
T d1kp8a1         196 KGG-----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQ  231 (252)
T ss_dssp             HHS-----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHH
T ss_pred             eec-----CCCeeEEEEEEEEEEEEeeccCCcceeccHhhh
Confidence            642     346899999999999999999999999998875

>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=7.4e-08  Score=90.84  Aligned_cols=135  Identities=15%  Similarity=0.208  Sum_probs=76.7

Q ss_pred             eEEEEeEEEeccCCCCCC-------cccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHH
Q psy14945        165 IILVKGVVLNHGARHPDM-------PKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAM  237 (629)
Q Consensus       165 S~li~Gvv~~~~~~~~~m-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~  237 (629)
                      .++.+|+.|+++|.+|+|       ...++||.|++++..|+.    .+.++|.|+...      .+..+-++.      
T Consensus         4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~----~~~i~p~Le~~~------~~~~pLlII------   67 (193)
T d1kida_           4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISN----IREMLPVLEAVA------KAGKPLLII------   67 (193)
T ss_dssp             CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECC----HHHHHHHHHHHH------HHTCCEEEE------
T ss_pred             ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCccc----HHHHHHHHHHHH------hhCCcEEEE------
Confidence            456789999999999964       456899999999999842    233334333220      000001111      


Q ss_pred             hhhhCCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHH
Q psy14945        238 DDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLA  317 (629)
Q Consensus       238 ~~~~GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~  317 (629)
                         .-|=...|+..+.             .++.++.+.+|++   ...++.+                .++..+++||.+
T Consensus        68 ---A~di~~~aL~~Lv-------------~N~~kg~l~v~aV---kaPgfG~----------------~r~~~LeDlA~~  112 (193)
T d1kida_          68 ---AEDVEGEALATLV-------------VNTMRGIVKVAAV---KAPGFGD----------------RRKAMLQDIATL  112 (193)
T ss_dssp             ---ESEECHHHHHHHH-------------HHHHTTSCCEEEE---ECCSCHH----------------HHHHHHHHHHHH
T ss_pred             ---eccccHHHHHHHH-------------HhhhccCcceeec---cCCCcCh----------------hHHHHHHHHHHH
Confidence               1111111233332             2222344445532   2223322                134579999999


Q ss_pred             hCCccccc-----ccccCcCCCcccceEEEEEEcCeeEEEE
Q psy14945        318 CGGTAMNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFV  353 (629)
Q Consensus       318 tGg~i~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~  353 (629)
                      |||++++.     +..++.+++|+|+++.   ++..+.+++
T Consensus       113 TGa~vi~~~~g~~l~~~~~~~LG~~~kv~---itk~~T~ii  150 (193)
T d1kida_         113 TGGTVISEEIGMELEKATLEDLGQAKRVV---INKDTTTII  150 (193)
T ss_dssp             HTCCCBCGGGTCCGGGCCGGGCEEEEEEE---ECSSCEEEE
T ss_pred             cCCEEechhcccccccCCHhHcCcccEEE---EecCceEEE
Confidence            99999885     3567778899998776   444444444

>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.10  E-value=1.9e-07  Score=86.69  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             EeEEEeccCCCCCC-------cccccCeeEEEeeccccccccccCCCccccccccceeeeccccHHHHHHHHHHHHhhhh
Q psy14945        169 KGVVLNHGARHPDM-------PKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASLIARASTAMDDMT  241 (629)
Q Consensus       169 ~Gvv~~~~~~~~~m-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~l~~~~~i~i~~~~~~akll~~e~~~~~~~~  241 (629)
                      +|+-|++||.+|++       ...++||.|+++|..|+    ..+.++|.|+...      .+..+.++..+.     ..
T Consensus         1 EG~~~d~Gy~SpyFvtd~~~~~~~l~np~ILi~d~kI~----~~~~i~p~Le~~~------~~~~PLlIIA~d-----i~   65 (176)
T d1ioka2           1 EGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS----SLQPMVPLLESVI------QSQKPLLIVAED-----VE   65 (176)
T ss_dssp             CCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC----CCCC-----------------CCCCEEEESC-----BC
T ss_pred             CCcccccCccCccceeCCcCCEEEeeCcEEEEEccccC----cHHHHHHHHHHHH------hcCCcEEEEecC-----CC
Confidence            49999999999964       45689999999999995    4566777777531      111122222111     11


Q ss_pred             CCCchHHHHHHHHHHhhhHHHHHHHhhccccccCccccccccccCCCHHHHHHHHHhCcEEEeccchhhHHHHHHHhCCc
Q psy14945        242 GDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGT  321 (629)
Q Consensus       242 GDGTt~Vv~~i~elL~~Ae~ll~~~~~~~~~~l~v~~~~~l~~k~i~~~~~~~la~~~I~vv~~v~~~dl~rIak~tGg~  321 (629)
                      ||    ++..+.             .++.++.+.+|++   -..++++                .++..|++||..|||+
T Consensus        66 ~~----aL~~Lv-------------~N~~~g~l~v~aV---kaP~fG~----------------~r~~~LeDlA~~tGa~  109 (176)
T d1ioka2          66 GE----ALATLV-------------VNKLRGGLKIAAV---KAPGFGD----------------RRKAMLQDIAILTGGQ  109 (176)
T ss_dssp             ----------------------------------CEEE---ECSCCTT----------------HHHHHHHHHHHHHTC-
T ss_pred             HH----HHHHHH-------------HHHhcCCceEEEE---eCCCCCc----------------HHHHHHHHHHHhhCCE
Confidence            11    123332             2223344455542   1223322                1345799999999999


Q ss_pred             cccc-----ccccCcCCCcccceEEEEEEcCeeEEEE
Q psy14945        322 AMNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFV  353 (629)
Q Consensus       322 i~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~  353 (629)
                      +++.     +..++.+.+|+|+++.   ++.++.+++
T Consensus       110 vi~~~~g~~l~~~~~~~LG~a~kv~---vtk~~T~ii  143 (176)
T d1ioka2         110 VISEDLGMKLENVTIDMLGRAKKVS---INKDNTTIV  143 (176)
T ss_dssp             --------------CTTSEEEEEEE---ECSSCEEEE
T ss_pred             EEecccCCChhhCCHHHCceeeEEE---EecCceEEE
Confidence            9875     4567778899998776   444444333

>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=1e-07  Score=85.63  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=34.7

Q ss_pred             hhhHHHHHHHhCCccccc-----ccccCcCCCcccceEEEEEEcCeeEEEEe
Q psy14945        308 RRNMERLSLACGGTAMNS-----VEGLEPAHLGYAGSVFEHVLGEEKFTFVE  354 (629)
Q Consensus       308 ~~dl~rIak~tGg~i~~s-----~~~l~~~~lG~~~~v~e~~i~~~~~~~~~  354 (629)
                      +..++++|..|||++.+.     ++.++.+.+|+|+++.   ++.++.+++.
T Consensus        95 ~~~L~DlAi~tGa~v~~~~~g~~l~~~~~~~LGsa~kv~---vtkd~T~ii~  143 (145)
T d1srva_          95 KEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVR---ITKDETTIVG  143 (145)
T ss_dssp             HHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEE---ECSSCEEEEE
T ss_pred             HHHHhhhhhhhCCEeeccccCcccccCCHHHCCcccEEE---EeCCccEEeC
Confidence            457999999999999865     3456778899998876   6666766664

>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: GroEL-intermediate domain like
superfamily: GroEL-intermediate domain like
family: GroEL-like chaperone, intermediate domain
domain: GroEL, I domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=87.05  E-value=0.0026  Score=51.25  Aligned_cols=50  Identities=14%  Similarity=0.023  Sum_probs=34.3

Q ss_pred             cccccceeEEEec-CCCccc-eEEEEeEEEeccCCCCCCc--------ccccCeeEEEee
Q psy14945        146 NAHILTCNISMEY-EKSDVC-IILVKGVVLNHGARHPDMP--------KSVKNAHILTCN  195 (629)
Q Consensus       146 ~~~~~~i~i~~i~-Ggs~~d-S~li~Gvv~~~~~~~~~m~--------~~i~n~kIll~~  195 (629)
                      +..+++-.++.+. |.+..+ .++++|+.|++++.+|++.        ..++||+||+.+
T Consensus        29 ~~kVG~dGvItvEe~~~~~t~le~veG~~~d~Gy~Sp~fvtd~k~r~e~~l~~p~ili~d   88 (89)
T d1sjpa3          29 MDKVGNEGVITVEESNTFGLQLELTEVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE   88 (89)
T ss_dssp             HHHSCTTSCEEEEEESSSSEEEEEESEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEeccccceEEEEEEEEEecCCccCceEEcccHHhhHHHHhCceEeeec
Confidence            3445555666665 555554 6999999999999998652        125677776654