Psyllid ID: psy14973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MVKRNQLISFQRFDREGTRGPAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY
Secondary Structure (PSIPRED)
cccccccccHHHcccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEEcccEEEEEEEEEEcccccccccccEEccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHccccccccccccHHHccccccccccccccccEEEEEcccEEEEEEEccccEEEEEEEEEccccccccccccEcccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvkrnqlisfqrfdregtrgpakkpqpaaskkggaskdgessggpagswclegmrfvkvdefrgrpliSIREYYEKngqllpgkkgisLSATQWRKLLTLQDSVNSELDKY
Flexible Loop (DISEMBL)
mvkrnqlisfqrfdregtrgpakkpqpaaskkggaskdgessggpagswcLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLltlqdsvnseldky
Low Complexity Region (SEG)
MVKRNQLISFQRFDREGTRgpakkpqpaaskkggaSKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY
Disordered region (IsUnstruct)
***********************************************SWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTL***********
Disordered Region (DISOPRED)
*************************************************CLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY
Disordered Region (DISEMBL)
MVKRNQLISFQRFDR******************************AGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY
Disordered Region (DISPRO)
********************************************PAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKRNQLISFQRFDREGTRGPAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9VLR5	110	RNA polymerase II transcr	yes	N/A	0.810	0.818	0.468	2e-16
P87294	136	Putative RNA polymerase I	yes	N/A	0.540	0.441	0.451	2e-09
Q872F4	172	Putative RNA polymerase I	N/A	N/A	0.756	0.488	0.384	3e-09
Q5ZK63	126	Activated RNA polymerase	yes	N/A	0.684	0.603	0.423	5e-09
Q63396	127	Activated RNA polymerase	yes	N/A	0.693	0.606	0.410	1e-07
O65155	165	RNA polymerase II transcr	yes	N/A	0.396	0.266	0.545	1e-07
P11031	127	Activated RNA polymerase	yes	N/A	0.693	0.606	0.397	2e-07
O65154	107	RNA polymerase II transcr	no	N/A	0.774	0.803	0.354	1e-06
Q5R6D0	127	Activated RNA polymerase	yes	N/A	0.396	0.346	0.511	3e-06
Q4R947	127	Activated RNA polymerase	N/A	N/A	0.396	0.346	0.511	3e-06

>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila melanogaster GN=Ssb-c31a PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 4/94 (4%)

Query: 20  GPAKKPQPAASK---KGGASKDGESSG-GPAGSWCLEGMRFVKVDEFRGRPLISIREYYE 75
           GP  + +PA+ K       + D + SG   A SW LEG+R V+++EFRGR  + IRE+Y+
Sbjct: 16  GPDDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYD 75

Query: 76  KNGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109
           K GQ+LPGKKGISLS  QW+KLL + + V   ++
Sbjct: 76  KGGQILPGKKGISLSLIQWKKLLEVAEEVTRAIE 109

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA (By similarity). Binds specifically to the NssBF element, a short nucleotide sequence of the 1731 retrotransposon, to repress promoter activity.
Drosophila melanogaster (taxid: 7227)

>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16A10.02 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 49  WCLEGM--RFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNS 106
           W L     + + + EFRG   + IREYYEK+G +LPGKKGI+L+  +W+KL  L   V+ 
Sbjct: 30  WALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDD 89

Query: 107 EL 108
            L
Sbjct: 90  SL 91

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 7/91 (7%)

Query: 18  TRGPAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKN 77
           ++G   K QP    KG + +DG +       W L   R +    FR   L++IREYY+  
Sbjct: 22  SKGNTGKAQPQELTKG-SDQDGNTF------WELGNNRRISSSVFRNTTLVNIREYYDAG 74

Query: 78  GQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
           G+L+PGKKGISLS  Q++ LL +   +N++L
Sbjct: 75  GKLMPGKKGISLSLAQYQNLLKVIPQLNADL 105

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 21  PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQ 79
           P KK +   S KG AS   +SS      + +  MR+V V +F+G+ LI IREY+ ++ G+
Sbjct: 36  PVKKQKTGESSKGAAS-SKQSSNRDENMFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGE 94

Query: 80  LLPGKKGISLSATQWRKL 97
           + PG+KGISL+  QW +L
Sbjct: 95  MKPGRKGISLNPEQWNQL 112

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Gallus gallus (taxid: 9031)

>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=2 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 21  PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQ 79
           P KK +P  S +  AS    SS      + +  MR+V V +F+G+ LI IREY+ +  G+
Sbjct: 36  PVKKQKPGESSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGE 95

Query: 80  LLPGKKGISLSATQWRKL 97
           + PG+KGISL+  QW +L
Sbjct: 96  MKPGRKGISLNMEQWSQL 113

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Rattus norvegicus (taxid: 10116)

>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 51  LEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQW 94
           L   R V + EF+G+ L+SIREYY+K+G+ LP  KGISL+  QW
Sbjct: 101 LSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQW 144

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 21  PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQ 79
           P KK +P  + +  AS    SS      + +  MR+V V +F+G+ LI IREY+ +  G+
Sbjct: 36  PVKKQKPGETSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGE 95

Query: 80  LLPGKKGISLSATQWRKL 97
           + PG+KGISL+  QW +L
Sbjct: 96  MKPGRKGISLNMEQWSQL 113

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Mus musculus (taxid: 10090)

>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 14  DREGTRGPAKK-PQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIRE 72
           D   T  PAKK  +PA         D            +   R V V  + G+  I IRE
Sbjct: 17  DESETHAPAKKVAKPA---------DDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIRE 67

Query: 73  YYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
           +Y K+G+ LPGKKGISLS  QW  L    + +   L
Sbjct: 68  FYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKAL 103

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii GN=SUB1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 54  MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
           MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L
Sbjct: 69  MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 113

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Pongo abelii (taxid: 9601)

>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis GN=SUB1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 54  MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
           MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L
Sbjct: 69  MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 113

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
195386510	111	GJ24334 [Drosophila virilis] gi|19414840	0.765	0.765	0.523	4e-18
195035187	119	GH11512 [Drosophila grimshawi] gi|193905	0.729	0.680	0.560	6e-18
195114344	113	GI17008 [Drosophila mojavensis] gi|19391	0.792	0.778	0.478	7e-18
195472945	110	GE18744 [Drosophila yakuba] gi|194174859	0.765	0.772	0.494	4e-16
357618935	106	putative RNA polymerase II transcription	0.729	0.764	0.5	1e-15
194759630	111	GF15272 [Drosophila ananassae] gi|190615	0.810	0.810	0.462	1e-15
194863061	110	GG10524 [Drosophila erecta] gi|190662124	0.774	0.781	0.477	2e-15
162809318	83	putative RNA polymerase II transcription	0.657	0.879	0.534	2e-15
389610155	105	single stranded-binding protein c31A [Pa	0.765	0.809	0.460	7e-15
17137156	110	single stranded-binding protein c31A [Dr	0.810	0.818	0.468	8e-15

>gi|195386510|ref|XP_002051947.1| GJ24334 [Drosophila virilis] gi|194148404|gb|EDW64102.1| GJ24334 [Drosophila virilis]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 25  PQPAASKKGGASKDGESSG-GPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPG 83
           P   A + G A K  +  G G   +W LEGMR V+++EFRG+ ++ IRE+YEK+G++LPG
Sbjct: 25  PSKKAKETGTAEKSKKDDGDGGVSTWTLEGMRQVRINEFRGKKMVDIREHYEKDGKVLPG 84

Query: 84  KKGISLSATQWRKLLTLQDSVNSELD 109
           KKGISLSATQW+KLL + D V+  L+
Sbjct: 85  KKGISLSATQWKKLLAVADDVSRALE 110

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035187|ref|XP_001989059.1| GH11512 [Drosophila grimshawi] gi|193905059|gb|EDW03926.1| GH11512 [Drosophila grimshawi]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 29  ASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGIS 88
           A+K   A K G+   G + SW LEGMR V+++EFRGR ++ IRE+YEK+G++LPGKKGIS
Sbjct: 39  ANKNESAVKRGDGGDGTS-SWTLEGMRQVRINEFRGRKMVDIREHYEKDGKVLPGKKGIS 97

Query: 89  LSATQWRKLLTLQDSVNSELDK 110
           LSA+QWRKLL   D V   L++
Sbjct: 98  LSASQWRKLLACADDVTRALEE 119

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114344|ref|XP_002001727.1| GI17008 [Drosophila mojavensis] gi|193912302|gb|EDW11169.1| GI17008 [Drosophila mojavensis]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 4/92 (4%)

Query: 23  KKPQPAASKKGGA----SKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNG 78
           + P P+   K GA    +K+    G    +W LEGMR V+++EFRGR ++ IRE+YEK+G
Sbjct: 22  RNPPPSKKSKEGADVKSNKNDSGDGSETTTWTLEGMRQVRINEFRGRKMVDIREHYEKDG 81

Query: 79  QLLPGKKGISLSATQWRKLLTLQDSVNSELDK 110
           ++LPGKKGISL+ +QW+KLL + D V   L+K
Sbjct: 82  KVLPGKKGISLTLSQWKKLLAVADDVTRALEK 113

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472945|ref|XP_002088758.1| GE18744 [Drosophila yakuba] gi|194174859|gb|EDW88470.1| GE18744 [Drosophila yakuba]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 4/89 (4%)

Query: 20  GPAKKPQPAA--SKKGGASKDG--ESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYE 75
           GP  + +PA+  +K+  A K    +S G  A +W LEG+R V+++EFRGR ++ IRE+YE
Sbjct: 16  GPDDRNKPASKKAKESAAPKSARRDSGGDNATTWTLEGLRQVRINEFRGRKMVDIREFYE 75

Query: 76  KNGQLLPGKKGISLSATQWRKLLTLQDSV 104
           K G+ LPGKKGISLS  QW+KLL + + V
Sbjct: 76  KGGETLPGKKGISLSVKQWKKLLEVAEEV 104

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618935|gb|EHJ71719.1| putative RNA polymerase II transcriptional coactivator [Danaus plexippus]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 5/86 (5%)

Query: 23  KKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLP 82
           + P P    K G+  D +       +W LEG + VKV EF+GR  I IRE+YEKNG+LLP
Sbjct: 22  RNPPPEKKAKMGSRTDDKEP-----TWVLEGKKLVKVREFKGRVFIDIREFYEKNGELLP 76

Query: 83  GKKGISLSATQWRKLLTLQDSVNSEL 108
           GKKGISL+   WRKLL+L D +N  +
Sbjct: 77  GKKGISLTPDMWRKLLSLGDEINETV 102

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759630|ref|XP_001962050.1| GF15272 [Drosophila ananassae] gi|190615747|gb|EDV31271.1| GF15272 [Drosophila ananassae]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 3/93 (3%)

Query: 20  GPAKKPQPAA--SKKGGASKDGESSGGPAG-SWCLEGMRFVKVDEFRGRPLISIREYYEK 76
           GP  + QPA+  +K   AS  G+  G   G +W LE +R V ++EFRGR ++ IRE+YEK
Sbjct: 18  GPEDRNQPASKKAKNTPASSAGKVDGRSEGNTWTLEKLRLVTINEFRGRKMVDIREHYEK 77

Query: 77  NGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109
           +G++LPGKKGISLS  QW+KL+   D +   ++
Sbjct: 78  DGKVLPGKKGISLSIQQWKKLIEQADEITGAIE 110

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863061|ref|XP_001970257.1| GG10524 [Drosophila erecta] gi|190662124|gb|EDV59316.1| GG10524 [Drosophila erecta]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 4/90 (4%)

Query: 20  GPAKKPQPAA--SKKGGASKDG--ESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYE 75
           GP  + +PA+  +K+  A K    +S G    +W LEG+R V+++EFRGR ++ IRE+YE
Sbjct: 16  GPDDRNKPASKKAKESPAPKSARQDSGGNDTTTWTLEGLRQVRINEFRGRKMVDIREFYE 75

Query: 76  KNGQLLPGKKGISLSATQWRKLLTLQDSVN 105
           K G+ LPGKKGISLS  QW+KLL + + V 
Sbjct: 76  KGGETLPGKKGISLSVKQWKKLLEVAEEVT 105

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|162809318|dbj|BAF95583.1| putative RNA polymerase II transcriptional coactivator [Antheraea yamamai]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%)

Query: 36  SKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWR 95
           +K G  +     +W LEG + VKV EF+G+  + IRE+YEKNG+LLPGKKGIS++  QWR
Sbjct: 7   AKMGSRTDDKEPTWVLEGKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQWR 66

Query: 96  KLLTLQDSVNSEL 108
           KLL+L D VN  +
Sbjct: 67  KLLSLSDEVNETI 79

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610155|dbj|BAM18689.1| single stranded-binding protein c31A [Papilio xuthus]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 20  GPAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQ 79
           GP  + QPA  K    +K G  +     +W L+G + VKV  F+G+  + +RE+YEKNG 
Sbjct: 17  GPVDRNQPAEKK----AKMGSRTEDKEPTWVLQGKKLVKVRTFKGKVYVDVREFYEKNGD 72

Query: 80  LLPGKKGISLSATQWRKLLTLQDSVNSEL 108
           LLPGKKGISL+  QWRKLL+L + +N  +
Sbjct: 73  LLPGKKGISLTPEQWRKLLSLGNEINETI 101

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137156|ref|NP_477136.1| single stranded-binding protein c31A [Drosophila melanogaster] gi|37090031|sp|Q9VLR5.1|TCP4_DROME RecName: Full=RNA polymerase II transcriptional coactivator; AltName: Full=p11 gi|7297359|gb|AAF52619.1| single stranded-binding protein c31A [Drosophila melanogaster] gi|66772731|gb|AAY55677.1| IP02710p [Drosophila melanogaster] gi|220951244|gb|ACL88165.1| Ssb-c31a-PA [synthetic construct] gi|220959914|gb|ACL92500.1| Ssb-c31a-PA [synthetic construct]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 4/94 (4%)

Query: 20  GPAKKPQPAASK---KGGASKDGESSG-GPAGSWCLEGMRFVKVDEFRGRPLISIREYYE 75
           GP  + +PA+ K       + D + SG   A SW LEG+R V+++EFRGR  + IRE+Y+
Sbjct: 16  GPDDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYD 75

Query: 76  KNGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109
           K GQ+LPGKKGISLS  QW+KLL + + V   ++
Sbjct: 76  KGGQILPGKKGISLSLIQWKKLLEVAEEVTRAIE 109

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0015299	110	Ssb-c31a "Single stranded-bind	0.639	0.645	0.534	1.1e-16
ASPGD|ASPL0000000236	168	AN5806 [Emericella nidulans (t	0.630	0.416	0.450	5.8e-11
POMBASE|SPAC16A10.02	136	sub1 "transcription coactivato	0.468	0.382	0.5	6.6e-10
ZFIN|ZDB-GENE-040718-209	124	sub1b "SUB1 homolog b (S. cere	0.666	0.596	0.395	7.6e-09
UNIPROTKB|Q5ZK63	126	SUB1 "Activated RNA polymerase	0.549	0.484	0.430	1.6e-08
UNIPROTKB|G4NEJ8	162	MGG_00780 "Uncharacterized pro	0.603	0.413	0.376	2e-08
ZFIN|ZDB-GENE-050522-151	123	sub1a "SUB1 homolog a (S. cere	0.468	0.422	0.456	2.6e-08
TAIR|locus:2123416	165	KELP [Arabidopsis thaliana (ta	0.396	0.266	0.545	3.3e-08
UNIPROTKB|A7YWC6	127	SUB1 "Uncharacterized protein"	0.396	0.346	0.511	6.8e-08
UNIPROTKB|E2R6X3	127	SUB1 "Uncharacterized protein"	0.396	0.346	0.511	6.8e-08

FB|FBgn0015299 Ssb-c31a "Single stranded-binding protein c31A" [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 39/73 (53%), Positives = 53/73 (72%)

Query:    37 KDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRK 96
             KD   +G  A SW LEG+R V+++EFRGR  + IRE+Y+K GQ+LPGKKGISLS  QW+K
Sbjct:    39 KDSGENG--ATSWTLEGLRQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKK 96

Query:    97 LLTLQDSVNSELD 109
             LL + + V   ++
Sbjct:    97 LLEVAEEVTRAIE 109

GO:0005634 "nucleus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=ISS;NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005667 "transcription factor complex" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

ASPGD|ASPL0000000236 AN5806 [Emericella nidulans (taxid:162425)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query:    40 ESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLT 99
             E S G    W +  MR V +  FRG+ +++IREYYEK+G+ LPGKKGISL   Q+  L+T
Sbjct:    49 EDSNGDI-YWEISKMRRVTISSFRGKTMVNIREYYEKDGEELPGKKGISLPIDQFSSLVT 107

Query:   100 LQDSVNSELDK 110
             L   +   L +
Sbjct:   108 LLPEIEIVLQE 118

GO:0005575 "cellular_component" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

POMBASE|SPAC16A10.02 sub1 "transcription coactivator PC4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query:    57 VKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
             + + EFRG   + IREYYEK+G +LPGKKGI+L+  +W+KL  L   V+  L
Sbjct:    40 ITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSL 91

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0060261 "positive regulation of transcription initiation from RNA polymerase II promoter" evidence=IDA

ZFIN|ZDB-GENE-040718-209 sub1b "SUB1 homolog b (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 34/86 (39%), Positives = 51/86 (59%)

Query:    37 KDGESSGGPAGSWCLE---------G-MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKK 85
             K GESS  P+GS   E         G +R+V V +F+G+ LI IREY+ ++ G++ PGKK
Sbjct:    40 KSGESSK-PSGSAKTEKSSDNMFQIGKLRYVSVRDFKGKVLIDIREYWMDQAGEMKPGKK 98

Query:    86 GISLSATQWRKLLTLQDSVNSELDKY 111
             GISL+  QW +L      ++  + +Y
Sbjct:    99 GISLNPEQWSQLKEQMSDIDDAIKRY 124

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|Q5ZK63 SUB1 "Activated RNA polymerase II transcriptional coactivator p15" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/72 (43%), Positives = 45/72 (62%)

Query:    37 KDGESSGGPAGS----------WCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKK 85
             K GESS G A S          + +  MR+V V +F+G+ LI IREY+ ++ G++ PG+K
Sbjct:    41 KTGESSKGAASSKQSSNRDENMFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRK 100

Query:    86 GISLSATQWRKL 97
             GISL+  QW +L
Sbjct:   101 GISLNPEQWNQL 112

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G4NEJ8 MGG_00780 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query:    40 ESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLT 99
             ++ G P   W +   R V + +F+    I+IREYYE  G++ PGKKGI L+  Q+   L 
Sbjct:    46 DAEGNPF--WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLK 103

Query:   100 LQDSVNSEL 108
                ++N+EL
Sbjct:   104 AIPAINAEL 112

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-050522-151 sub1a "SUB1 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/57 (45%), Positives = 42/57 (73%)

Query:    54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELD 109
             MR+V V +F+G+ LI IREY+ ++ G++ PG+KGISL+  QW +L   ++ + SE+D
Sbjct:    65 MRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQL---KEQI-SEID 117

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2123416 KELP [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query:    51 LEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQW 94
             L   R V + EF+G+ L+SIREYY+K+G+ LP  KGISL+  QW
Sbjct:   101 LSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQW 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A7YWC6 SUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 23/45 (51%), Positives = 34/45 (75%)

Query:    54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
             MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L
Sbjct:    69 MRYVSVRDFKGKVLIDIREYWMDAEGEMKPGRKGISLNPEQWSQL 113

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

UNIPROTKB|E2R6X3 SUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 23/45 (51%), Positives = 34/45 (75%)

Query:    54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
             MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L
Sbjct:    69 MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 113

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11031	TCP4_MOUSE	No assigned EC number	0.3974	0.6936	0.6062	yes	N/A
Q63396	TCP4_RAT	No assigned EC number	0.4102	0.6936	0.6062	yes	N/A
Q5ZK63	TCP4_CHICK	No assigned EC number	0.4230	0.6846	0.6031	yes	N/A
Q9VLR5	TCP4_DROME	No assigned EC number	0.4680	0.8108	0.8181	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam02229	81	pfam02229, PC4, Transcriptional Coactivator p15 (P	2e-21

>gnl|CDD|216939 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)

 Score = 80.4 bits (199), Expect = 2e-21
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 21  PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQL 80
           P KK     SK   +SK  ++ G     + L   R V V EF+G+ L+ IREYYEK+G++
Sbjct: 1   PVKK-----SKSEESSKGSDAEGDIF--FELSKNRRVTVSEFKGKTLVDIREYYEKDGEM 53

Query: 81  LPGKKGISLSATQWRKLLTLQDSVNSEL 108
           LPGKKGISL+  QW  L      ++  +
Sbjct: 54  LPGKKGISLTLEQWNALKEHIPEIDDAI 81

p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG2712|consensus	108		99.98
PF02229	56	PC4: Transcriptional Coactivator p15 (PC4); InterP	99.91
COG4443	72	Uncharacterized protein conserved in bacteria [Fun	92.64

>KOG2712|consensus

Probab=99.98  E-value=5.6e-33  Score=198.84  Aligned_cols=70  Identities=44%  Similarity=0.728  Sum_probs=67.7

Q ss_pred             CCCCCeeEEeCCeeEEEEeeeCCceeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973         42 SGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY  111 (111)
Q Consensus        42 ~~~~~~~~~Ls~~rrVtV~~FKG~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~  111 (111)
                      +.++..+|.|+++|||||++|+|+.||||||||.++|+|+|||||||||++||.+|++++++||+||.+|
T Consensus        36 ~s~~~~i~~l~~~RrVtV~eFkGk~~VdIREyY~kdG~mlPgkKGISLs~~qW~~Lk~~~~eId~Al~~l  105 (108)
T KOG2712|consen   36 DSEDDNIFNLGKNRRVTVREFKGKILVDIREYYVKDGKMLPGKKGISLSLEQWSKLKEHIEEIDKALRKL  105 (108)
T ss_pred             CcCccceeecCCceEEehhhcCCceEEehhHhhhccCccccCccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence            5688999999999999999999999999999999999999999999999999999999999999999875

>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []

Probab=99.91  E-value=6.3e-25  Score=140.06  Aligned_cols=54  Identities=46%  Similarity=0.781  Sum_probs=48.2

Q ss_pred             eEEeCCeeEEEEeeeCCceeEEeEEEEec-CCeeccccceeeeCHHHHHHHHHhH
Q psy14973         48 SWCLEGMRFVKVDEFRGRPLISIREYYEK-NGQLLPGKKGISLSATQWRKLLTLQ  101 (111)
Q Consensus        48 ~~~Ls~~rrVtV~~FKG~~~VdIREyYek-dGe~kPgKKGISLs~eqw~~Lk~~i  101 (111)
                      +|.++.+++|+|++|+|++||||||||++ ||+|+||+|||||+++||.+|++++
T Consensus         2 ~~~~~~~~rv~v~~fkG~~~vdIRe~y~~~~g~~~P~kKGIsL~~~q~~~l~~~l   56 (56)
T PF02229_consen    2 IKNLGEKRRVSVSEFKGKPYVDIREWYEKKDGEWKPTKKGISLTPEQWKELKEAL   56 (56)
T ss_dssp             EETTEEEEEEEEEEETTSEEEEEEEEETTSSS-EEEEEEEEEE-HHHHHHHHHH-
T ss_pred             cccCCCeEEEEEEEeCCeEEEEEEeeEEcCCCcCcCcCCEEEcCHHHHHHHHhhC
Confidence            57789999999999999999999999965 9999999999999999999999874

The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.

>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.64  E-value=0.083  Score=35.82  Aligned_cols=39  Identities=31%  Similarity=0.576  Sum_probs=30.3

Q ss_pred             eeCCce-eEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973         61 EFRGRP-LISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD  102 (111)
Q Consensus        61 ~FKG~~-~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~  102 (111)
                      .|+|+. -.|||.|-.+.  .+=| |||+||-+++..|++.+.
T Consensus        31 SwNg~~~KyDiR~Wspdh--~KMG-KGiTLt~eE~~~l~d~l~   70 (72)
T COG4443          31 SWNGRPPKYDIRAWSPDH--SKMG-KGITLTNEEFKALKDLLN   70 (72)
T ss_pred             ccCCCCCcCcccccCcch--hhhc-CceeecHHHHHHHHHHHh
Confidence            477775 78999986432  2345 999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
4agh_A	158	Structural Features Of Ssdna Binding Protein Mosub1		1e-08
1pcf_A	66	Human Transcriptional Coactivator Pc4 C-Terminal Do		3e-07

>pdb|4AGH|A Chain A, Structural Features Of Ssdna Binding Protein Mosub1 From Magnaporthe Oryzae Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 49  WCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDSVNSEL 108
           W +   R V + +F+    I+IREYYE  G++ PGKKGI L+  Q+   L    ++N+EL
Sbjct: 49  WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAEL 108

>pdb|1PCF|A Chain A, Human Transcriptional Coactivator Pc4 C-Terminal Domain Length = 66

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 54 MRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKL 97
          MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L
Sbjct: 8  MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	9e-20

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A Length = 66

 Score = 75.2 bits (185), Expect = 9e-20
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 49  WCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSE 107
           + +  MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L      ++  
Sbjct: 3   FQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDA 62

Query: 108 LDK 110
           + K
Sbjct: 63  VRK 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	100.0
4agh_A	158	Mosub1, transcription cofactor; ssDNA binding prot	100.0
3pm7_A	80	Uncharacterized protein; structural genomics, PSI-	96.78
4g06_A	79	Uncharacterized protein; structural genomics, PSI-	96.69
2l3a_A	82	Uncharacterized protein; structural genomics, PSI-	95.81
2ltd_A	80	Uncharacterized protein YDBC; structural genomics,	92.48

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A

Probab=100.00  E-value=1.8e-33  Score=185.32  Aligned_cols=65  Identities=37%  Similarity=0.782  Sum_probs=63.1

Q ss_pred             eeEEeCCeeEEEEeeeCCceeEEeEEEE-ecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973         47 GSWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY  111 (111)
Q Consensus        47 ~~~~Ls~~rrVtV~~FKG~~~VdIREyY-ekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~  111 (111)
                      .+|+||++|+|+|++|+|++|||||||| ++||+++||||||||+++||++|++++++||+||++|
T Consensus         1 ~~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~   66 (66)
T 1pcf_A            1 AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL   66 (66)
T ss_dssp             CEEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CeEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            3799999999999999999999999999 9999999999999999999999999999999999976

>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}

Probab=100.00  E-value=1.4e-33  Score=211.79  Aligned_cols=87  Identities=37%  Similarity=0.638  Sum_probs=69.1

Q ss_pred             CCCCCCCccCCCCCCCCCCCCCCCCCeeEEeCCeeEEEEeeeCCceeEEeEEEEecCCeeccccceeeeCHHHHHHHHHh
Q psy14973         21 PAKKPQPAASKKGGASKDGESSGGPAGSWCLEGMRFVKVDEFRGRPLISIREYYEKNGQLLPGKKGISLSATQWRKLLTL  100 (111)
Q Consensus        21 p~Kk~k~~~~~~~~~~~~~~s~~~~~~~~~Ls~~rrVtV~~FKG~~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~  100 (111)
                      |+|++++.++.... +.   ++++++.+|+||++|||+|++|+|++||||||||+++|+|+||||||||+++||+.|+++
T Consensus        25 ~~Kk~k~~~~~~~~-~~---~d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~  100 (158)
T 4agh_A           25 PVKKAKSKASNPGG-SQ---VDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKA  100 (158)
T ss_dssp             -------------C-CE---ECTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHH
T ss_pred             CccccccccCCCCC-Cc---cCCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHH
Confidence            44767655544222 22   577899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhC
Q psy14973        101 QDSVNSELDKY  111 (111)
Q Consensus       101 i~~Id~ai~k~  111 (111)
                      +++|++||+++
T Consensus       101 ~~~I~~ai~~~  111 (158)
T 4agh_A          101 IPAINAELRSR  111 (158)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999999864

>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}

Probab=96.78  E-value=0.0033  Score=42.51  Aligned_cols=47  Identities=26%  Similarity=0.448  Sum_probs=36.5

Q ss_pred             eeEEEEeeeCCc-eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHH
Q psy14973         54 MRFVKVDEFRGR-PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDS  103 (111)
Q Consensus        54 ~rrVtV~~FKG~-~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~  103 (111)
                      .+-+..-.|.|+ +-.|||.|= .| -.+.| |||+||.|+...|++.+..
T Consensus        24 ~KELNlVSWN~~~pKyDIR~W~-pd-h~kMg-KGITLT~eE~~~Lk~~L~~   71 (80)
T 3pm7_A           24 RKELNLISWNGRPPKFDLREWA-PD-HEKMG-KGITLTNEEFAELSKTIKS   71 (80)
T ss_dssp             EEEEEEECGGGCCCEEEEEEEC-TT-SSSEE-EEEEECHHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCCccccccC-cc-hhhcc-CcceeCHHHHHHHHHHHHH
Confidence            466777788866 489999984 33 23566 9999999999999988764

>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}

Probab=96.69  E-value=0.0069  Score=40.85  Aligned_cols=46  Identities=24%  Similarity=0.428  Sum_probs=36.6

Q ss_pred             eeEEEEeeeCCce-eEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973         54 MRFVKVDEFRGRP-LISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD  102 (111)
Q Consensus        54 ~rrVtV~~FKG~~-~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~  102 (111)
                      .+-+..-.|.|+. -.|||.|= .|- .+.| |||+||.|+...|++.+.
T Consensus        31 ~KELNlVSWN~~~pKyDIR~W~-pdh-~kMg-KGITLT~eE~~~L~~~L~   77 (79)
T 4g06_A           31 TKEINRVSFNGAPAKFDIRAWS-PDH-TKMG-KGITLSNEEFQTMVDAFK   77 (79)
T ss_dssp             EEEEEEEEETTCCCEEEEEEEC-TTS-SCBC-CCEEECHHHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCCccccccC-ccc-cccc-CccccCHHHHHHHHHHHc
Confidence            4677888888765 89999984 332 3566 999999999999998775

>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*

Probab=95.81  E-value=0.033  Score=37.75  Aligned_cols=46  Identities=22%  Similarity=0.375  Sum_probs=35.0

Q ss_pred             eeEEEEeeeCCc-eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHH
Q psy14973         54 MRFVKVDEFRGR-PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQD  102 (111)
Q Consensus        54 ~rrVtV~~FKG~-~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~  102 (111)
                      .+-+..-.|.|+ +-.|||.|= .|- .+=| |||+||.+|...|++.+.
T Consensus        26 ~KELNlVSWNg~~pKyDIR~Ws-pdh-~kMG-KGITLT~eE~~~L~~~L~   72 (82)
T 2l3a_A           26 TKEINRVSFNGAPAKFDIRAWS-PDH-TKMG-KGITLSNEEFQTMVDAFK   72 (82)
T ss_dssp             EEEEEEEEESSSCEEEEEEEEC-STT-CCCC-CCEEECHHHHHHHHHHHH
T ss_pred             eEEEEEEeECCCCCCccccccC-cch-hhcc-CcccccHHHHHHHHHHHH
Confidence            567777888876 489999993 322 2334 999999999999998764

>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}

Probab=92.48  E-value=0.014  Score=39.36  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             eEEEEeeeCCc-eeEEeEEEEecCCeeccccceeeeCHHHHHHHHHhHHH
Q psy14973         55 RFVKVDEFRGR-PLISIREYYEKNGQLLPGKKGISLSATQWRKLLTLQDS  103 (111)
Q Consensus        55 rrVtV~~FKG~-~~VdIREyYekdGe~kPgKKGISLs~eqw~~Lk~~i~~  103 (111)
                      +-+..-.|.|+ +-.|||.|= .|- .+=| |||+||.+|...|++.+..
T Consensus        25 KELNlVSWNg~~pKyDIR~Ws-pdh-~kMG-KGITLT~eE~~~L~~~Ln~   71 (80)
T 2ltd_A           25 KELNRVSWNDAEPKYDIRTWS-PDH-EKMG-KGITLSEEEFGVLLKELGN   71 (80)
Confidence            44566667765 489999994 222 2334 9999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1pcfa_	66	d.18.1.1 (A:) Transcriptional coactivator PC4 C-te	9e-21

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (189), Expect = 9e-21
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 49  WCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSE 107
           + +  MR+V V +F+G+ LI IREY+ +  G++ PG+KGISL+  QW +L      ++  
Sbjct: 3   FQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDA 62

Query: 108 LDK 110
           + K
Sbjct: 63  VRK 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1pcfa_	66	Transcriptional coactivator PC4 C-terminal domain	100.0

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=184.70  Aligned_cols=64  Identities=38%  Similarity=0.792  Sum_probs=62.7

Q ss_pred             eEEeCCeeEEEEeeeCCceeEEeEEEE-ecCCeeccccceeeeCHHHHHHHHHhHHHHHHHhhhC
Q psy14973         48 SWCLEGMRFVKVDEFRGRPLISIREYY-EKNGQLLPGKKGISLSATQWRKLLTLQDSVNSELDKY  111 (111)
Q Consensus        48 ~~~Ls~~rrVtV~~FKG~~~VdIREyY-ekdGe~kPgKKGISLs~eqw~~Lk~~i~~Id~ai~k~  111 (111)
                      +|+||++|||||++|||++|||||||| ++||+|+|||||||||++||++|++++++|++||++|
T Consensus         2 ~~~L~~~rrvtV~~FkG~~~vdIReyY~dkdGe~~PgkKGIsL~~~qw~~l~~~~~~i~~ai~~l   66 (66)
T d1pcfa_           2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL   66 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeecCCcEEEEEEEECCcEEEEEEEEEECCCCCCCCCCCeEEECHHHHHHHHHHHHHHHHHHHhC
Confidence            799999999999999999999999999 7999999999999999999999999999999999986