Psyllid ID: psy15036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MFADLAIMFADSRPESTFWIFGKPTYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL
Secondary Structure (PSIPRED)
ccccEEEEcccccccEEEEEEccccccccEEEEccccccccEEEEcccccccccEEEEcccccccccccEEEEEEcEEEEEEEEccEEcccccccHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccEEEEEccccEEccEHEHHHHHHHcccccccHcccccccHHHEEEEEcccccccEEEEEEcEEEEEEEEcccEEcHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHcccccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MFADLAIMFadsrpestfwifgkptyrctkvtkmtaakefsfnfgtqlgrrgipllkhlkylgtgthgktvgIVFPAIsvtysigpryfrfplvsrflslttglyrgTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCrevvtpdqimfgstqssl
Flexible Loop (DISEMBL)
MFADLAImfadsrpestfwifgkptYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREvvtpdqimfgstqssl
Low Complexity Region (SEG)
MFADLAIMFADSRPESTFWIFGKPTYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL
Disordered region (IsUnstruct)
****LAIMFADSRPESTFWIFGKPTYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF*******
Disordered Region (DISOPRED)
**AD***MFADSRPESTFWIFGKPTY********TAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS**
Disordered Region (DISEMBL)
MFADLAIMFADSRPESTFWIFGKPTYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIM********
Disordered Region (DISPRO)
MFADLAIMFADSRPESTFWIFGKPTYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFADLAIMFADSRPESTFWIFGKPTYRCTKVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
E2RQ15	213	Ras-related protein Rab-2	yes	N/A	0.558	0.469	0.315	7e-08
Q9WTL2	213	Ras-related protein Rab-2	yes	N/A	0.558	0.469	0.306	9e-08
P25228	220	Ras-related protein Rab-3	yes	N/A	0.223	0.181	0.55	1e-07
Q58DW6	213	Ras-related protein Rab-2	yes	N/A	0.558	0.469	0.315	1e-07
P57735	213	Ras-related protein Rab-2	yes	N/A	0.558	0.469	0.306	2e-07
P46629	213	Ras-related protein Rab-2	yes	N/A	0.558	0.469	0.306	2e-07
Q94986	219	Ras-related protein Rab-3	no	N/A	0.223	0.182	0.525	3e-07
O13876	234	GTP-binding protein ypt4	yes	N/A	0.564	0.431	0.298	4e-07
Q63941	219	Ras-related protein Rab-3	no	N/A	0.217	0.178	0.538	6e-07
Q9CZT8	219	Ras-related protein Rab-3	no	N/A	0.217	0.178	0.538	6e-07

>sp|E2RQ15|RAB25_CANFA Ras-related protein Rab-25 OS=Canis familiaris GN=RAB25 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T +I  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLHQAREVPTEEARMFAENN 147

Involved in the regulation of cell survival. Promotes invasive migration of cells in which it functions to localize and maintain integrin alpha-V/beta-1 at the tips of extending pseudopodia. May selectively regulate the apical recycling pathway (By similarity). Together with MYO5B regulates transcytosis.
Canis familiaris (taxid: 9615)

>sp|Q9WTL2|RAB25_MOUSE Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENN 147

Involved in the regulation of cell survival. Promotes invasive migration of cells in which it functions to localize and maintain integrin alpha-V/beta-1 at the tips of extending pseudopodia. May selectively regulate the apical recycling pathway. Together with MYO5B regulates transcytosis.

Mus musculus (taxid: 10090)

>sp|P25228|RAB3_DROME Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            R+ ++TT  YRG MGF+L++DVTNE+SF  V+ W+ QIK
Sbjct: 81  ERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIK 120

Involved in exocytosis by regulating a late step in synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Drosophila melanogaster (taxid: 7227)

>sp|Q58DW6|RAB25_BOVIN Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T +I  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENN 147

Involved in the regulation of cell survival. Promotes invasive migration of cells in which it functions to localize and maintain integrin alpha-V/beta-1 at the tips of extending pseudopodia. May selectively regulate the apical recycling pathway. Together with MYO5B regulates transcytosis.

Bos taurus (taxid: 9913)

>sp|P57735|RAB25_HUMAN Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 147

Involved in the regulation of cell survival. Promotes invasive migration of cells in which it functions to localize and maintain integrin alpha-V/beta-1 at the tips of extending pseudopodia. Increases the rates of ovarian and breast cancers progression and aggressiveness by modulating cellular processes such as proliferation, survival and migration of epithelial tumor cells. May selectively regulate the apical recycling pathway. Together with MYO5B regulates transcytosis.

Homo sapiens (taxid: 9606)

>sp|P46629|RAB25_RABIT Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 147

May selectively regulate the apical recycling pathway. Together with MYO5B regulates transcytosis.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 82  ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIK 121

Involved in exocytosis by regulating a late step in synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Caenorhabditis elegans (taxid: 6239)

>sp|O13876|YPT4_SCHPO GTP-binding protein ypt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt4 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
           TVGI F +  ++  +G +  R  L         +F S+    YRG  G +L++DVTN++S
Sbjct: 41  TVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDS 100

Query: 123 FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176
           F+++  WL  I+ M  +         V + G    LQ  R+V T +   F S +
Sbjct: 101 FEELSSWLSDIRAMAPSTI------CVVLAGSKSDLQNQRQVSTEEAAEFCSEK 148

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 83  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121

Protein transport. Probably involved in vesicular traffic.

Rattus norvegicus (taxid: 10116)

>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 83  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
357624129	209	putative Ras-related protein Rab-27A [Da	0.363	0.311	0.472	5e-08
242003701	213	GTP-binding nuclear protein RAN1, putati	0.363	0.305	0.444	6e-07
395845171	213	PREDICTED: ras-related protein Rab-25 [O	0.558	0.469	0.324	1e-06
301783133	213	PREDICTED: ras-related protein Rab-25-li	0.558	0.469	0.315	1e-06
281342890	199	hypothetical protein PANDA_016684 [Ailur	0.558	0.502	0.315	1e-06
195456678	230	GK16937 [Drosophila willistoni] gi|19417	0.368	0.286	0.438	2e-06
332027480	208	Ras-related protein Rab-27A [Acromyrmex	0.363	0.312	0.479	2e-06
213510702	218	Ras-related protein Rab-27B [Salmo salar	0.396	0.325	0.379	2e-06
355714881	199	RAB25, member RAS oncoprotein family [Mu	0.558	0.502	0.315	2e-06
195399430	226	GJ16030 [Drosophila virilis] gi|19415074	0.368	0.292	0.452	3e-06

>gi|357624129|gb|EHJ75014.1| putative Ras-related protein Rab-27A [Danaus plexippus]

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
           TVGI F   +V Y    R  R  L         RF SLTT  YR  MGFLL+FD+TNE S
Sbjct: 38  TVGIDFREKTVIYQQNSRQHRIHLQLWDTAGQERFRSLTTAFYRDAMGFLLLFDLTNEAS 97

Query: 123 FKDVEKWLLQIK 134
           F +V  W+ Q+K
Sbjct: 98  FLEVRNWIEQLK 109

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003701|ref|XP_002422827.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis] gi|212505697|gb|EEB10089.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus corporis]

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 7/72 (9%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
           TVGI F    + Y I  R +R  L         RF SLT   YR  MGFLL+FD+TNE S
Sbjct: 38  TVGIDFREKRLAYKIQGRSYRVHLQLWDTAGQERFRSLTRTFYRDAMGFLLLFDLTNEQS 97

Query: 123 FKDVEKWLLQIK 134
           F ++  WL Q++
Sbjct: 98  FLEIRNWLDQLR 109

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395845171|ref|XP_003795316.1| PREDICTED: ras-related protein Rab-25 [Otolemur garnettii]

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T +I  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYSVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L R REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSRAREVPTEEARMFAENN 147

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301783133|ref|XP_002926982.1| PREDICTED: ras-related protein Rab-25-like [Ailuropoda melanoleuca]

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 44  TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    LQ+ REV T +  MF    
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLQQAREVPTEEARMFAENN 147

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281342890|gb|EFB18474.1| hypothetical protein PANDA_016684 [Ailuropoda melanoleuca]

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 30  TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 89

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    LQ+ REV T +  MF    
Sbjct: 90  ERWLKE-------LYDHAEATIVVMLVGNKSDLQQAREVPTEEARMFAENN 133

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195456678|ref|XP_002075239.1| GK16937 [Drosophila willistoni] gi|194171324|gb|EDW86225.1| GK16937 [Drosophila willistoni]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
           TVGI F    + Y+   R  R  L         RF SLTT  YR  MGFLLIFD+T+E S
Sbjct: 43  TVGIDFREKRLVYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSEKS 102

Query: 123 FKDVEKWLLQIKV 135
           F ++  WL Q+++
Sbjct: 103 FLEITNWLEQLRM 115

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027480|gb|EGI67563.1| Ras-related protein Rab-27A [Acromyrmex echinatior]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 70  TVGIVFPAISVTYSI-GPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNEN 121
           TVGI F    V Y     R  R  L         RF SLTT  YR +MGFLLIFD+TNE+
Sbjct: 38  TVGIDFKEKRVIYQTENGRSQRVHLQLWDTAGQERFRSLTTAFYRDSMGFLLIFDLTNES 97

Query: 122 SFKDVEKWLLQIK 134
           SF +V  WL Q++
Sbjct: 98  SFLEVRNWLEQLR 110

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|213510702|ref|NP_001134713.1| Ras-related protein Rab-27B [Salmo salar] gi|209735378|gb|ACI68558.1| Ras-related protein Rab-27B [Salmo salar]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 8/79 (10%)

Query: 57  KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFD 116
           K + YLGTG++G T          T+ +  + +      RF SLTT  +R  MGFLL+FD
Sbjct: 50  KRVTYLGTGSNGTT--------EKTFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 101

Query: 117 VTNENSFKDVEKWLLQIKV 135
           +TN+ SF +V  W+ Q++ 
Sbjct: 102 LTNQQSFLNVRNWMSQLQA 120

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355714881|gb|AES05148.1| RAB25, member RAS oncoprotein family [Mustela putorius furo]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)

Query: 70  TVGIVFPAISVT---YSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +VT    +I  + +    + R+ ++T+  YRG +G LL+FD+T   ++   
Sbjct: 30  TIGVEFSTRTVTLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVA 89

Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    LQ+ REV T +  MF    
Sbjct: 90  ERWLKE-------LYDHAEATIVVMLVGNKSDLQQAREVPTEEARMFAENN 133

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195399430|ref|XP_002058323.1| GJ16030 [Drosophila virilis] gi|194150747|gb|EDW66431.1| GJ16030 [Drosophila virilis]

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
           TVGI F    + YS   R  R  L         RF SLTT  YR  MGFLLIFD+T++ S
Sbjct: 43  TVGIDFREKRLVYSSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSQKS 102

Query: 123 FKDVEKWLLQIKV 135
           F +V  WL Q+++
Sbjct: 103 FLEVTNWLEQLRM 115

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
WB|WBGene00000089	215	aex-6 [Caenorhabditis elegans	0.402	0.334	0.440	6.1e-09
FB|FBgn0005586	220	Rab3 "Rab3" [Drosophila melano	0.217	0.177	0.564	3.2e-08
UNIPROTKB|H3BS49	136	RAB27A "Ras-related protein Ra	0.223	0.294	0.55	6.8e-08
UNIPROTKB|H3BVH7	146	RAB27A "Ras-related protein Ra	0.223	0.273	0.55	6.8e-08
UNIPROTKB|Q94986	219	rab-3 "Ras-related protein Rab	0.217	0.178	0.538	3.8e-07
UNIPROTKB|H3BN55	185	RAB27A "Ras-related protein Ra	0.223	0.216	0.55	4.4e-07
WB|WBGene00004267	233	rab-3 [Caenorhabditis elegans	0.217	0.167	0.538	4.9e-07
UNIPROTKB|Q95QV3	233	rab-3 "Protein RAB-3, isoform	0.217	0.167	0.538	4.9e-07
FB|FBgn0025382	236	Rab27 "Rab27" [Drosophila mela	0.530	0.402	0.370	5.1e-07
MGI|MGI:1858203	213	Rab25 "RAB25, member RAS oncog	0.575	0.483	0.307	7.1e-07

WB|WBGene00000089 aex-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 133 (51.9 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 37/84 (44%), Positives = 43/84 (51%)

Query:    64 TGTHGKTVGIVFPAISVTYS-----IGPRYFRFPLV-------SRFLSLTTGLYRGTMGF 111
             TG    TVGI F    V Y       G R  R  L         RF SLTT  +R  MGF
Sbjct:    33 TGQFISTVGIDFKEKKVVYKSSRGGFGGRGQRVLLQLWDTAGQERFRSLTTAFFRDAMGF 92

Query:   112 LLIFDVTNENSFKDVEKWLLQIKV 135
             +LIFD+TNE SF ++  WL Q+KV
Sbjct:    93 ILIFDITNEQSFLNIRDWLSQLKV 116

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

FB|FBgn0005586 Rab3 "Rab3" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
             R+ ++TT  YRG MGF+L++DVTNE+SF  V+ W+ QIK
Sbjct:    82 RYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIK 120

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0015031 "protein transport" evidence=IEA;NAS

GO:0008021 "synaptic vesicle" evidence=IDA;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0048790 "maintenance of presynaptic active zone structure" evidence=IMP

UNIPROTKB|H3BS49 RAB27A "Ras-related protein Rab-27A" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
             RF SLTT  +R  MGFLL+FD+TNE SF +V  W+ Q+++
Sbjct:    80 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 119

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030318 "melanocyte differentiation" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0031489 "myosin V binding" evidence=IEA

GO:0032402 "melanosome transport" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043316 "cytotoxic T cell degranulation" evidence=IEA

GO:0043320 "natural killer cell degranulation" evidence=IEA

UNIPROTKB|H3BVH7 RAB27A "Ras-related protein Rab-27A" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
             RF SLTT  +R  MGFLL+FD+TNE SF +V  W+ Q+++
Sbjct:    80 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 119

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030318 "melanocyte differentiation" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0031489 "myosin V binding" evidence=IEA

GO:0032402 "melanosome transport" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043316 "cytotoxic T cell degranulation" evidence=IEA

GO:0043320 "natural killer cell degranulation" evidence=IEA

UNIPROTKB|Q94986 rab-3 "Ras-related protein Rab-3" [Caenorhabditis elegans (taxid:6239)]

 Score = 126 (49.4 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
             R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct:    83 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIK 121

GO:0006184 "GTP catabolic process" evidence=ISS

UNIPROTKB|H3BN55 RAB27A "Ras-related protein Rab-27A" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
             RF SLTT  +R  MGFLL+FD+TNE SF +V  W+ Q+++
Sbjct:    80 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 119

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030318 "melanocyte differentiation" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0031489 "myosin V binding" evidence=IEA

GO:0032402 "melanosome transport" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043316 "cytotoxic T cell degranulation" evidence=IEA

GO:0043320 "natural killer cell degranulation" evidence=IEA

WB|WBGene00004267 rab-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 126 (49.4 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
             R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct:    97 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIK 135

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0007271 "synaptic transmission, cholinergic" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IMP

GO:0007617 "mating behavior" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

UNIPROTKB|Q95QV3 rab-3 "Protein RAB-3, isoform a" [Caenorhabditis elegans (taxid:6239)]

 Score = 126 (49.4 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query:    96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
             R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct:    97 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIK 135

GO:0006184 "GTP catabolic process" evidence=ISS

FB|FBgn0025382 Rab27 "Rab27" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 40/108 (37%), Positives = 54/108 (50%)

Query:    70 TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
             TVGI F    + Y+   R  R  L         RF SLTT  YR  MGFLLIFD+T+E S
Sbjct:    49 TVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSEKS 108

Query:   123 FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQI 170
             F +   WL Q++      ++  +  +V      +LLQ    VV+ DQ+
Sbjct:   109 FLETANWLSQLRTH---AYSE-DPDVVLCGNKCDLLQL--RVVSRDQV 150

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

MGI|MGI:1858203 Rab25 "RAB25, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 35/114 (30%), Positives = 57/114 (50%)

Query:    70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
             T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct:    44 TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103

Query:   127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQSSL 179
             E+WL +       L+ H E  IV M  G    L + REV T +  MF      L
Sbjct:   104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLL 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031143 "pseudopodium" evidence=ISO

GO:0031268 "pseudopodium organization" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-11
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-10
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-10
pfam00071	162	pfam00071, Ras, Ras family	2e-10
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-10
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	7e-10
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-08
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-07
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-06
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	4e-06
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-06
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	7e-06
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	8e-06
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-05
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	6e-05
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-04
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	7e-04
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	7e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-04
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	0.001
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	0.002
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	0.002
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	0.002
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	0.003
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	0.003
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.004

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 13/79 (16%)

Query: 70  TVGIVFPAISVTY-SIGP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y S GP     + FR  L         RF SLTT  +R  MGFLL+FD
Sbjct: 36  TVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 95

Query: 117 VTNENSFKDVEKWLLQIKV 135
           +T+E SF +V  W+ Q++ 
Sbjct: 96  LTSEQSFLNVRNWMSQLQA 114

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 18/39 (46%), Positives = 30/39 (76%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T+  YRG +G LL++D+TN  SF+++E WL +++
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELR 99

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 100

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF +L    YRG  GFLL++D+T+ +SF++V+KWL +I 
Sbjct: 60  RFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEIL 98

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 19/39 (48%), Positives = 30/39 (76%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T+  YRG  G +L++DVTN  SF++++KWL ++K
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELK 99

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++TT  YRG MG +L++D+T+E SF++++ W+  I 
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNID 102

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 15/39 (38%), Positives = 32/39 (82%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++T+  YRG +G LL++D+T +++F++VE+WL +++
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELR 102

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 30/39 (76%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T+  YRGT G ++++DVTN  SF +V++WL +I+
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE 105

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
           RF S+T   YR ++G LL+FD+TN  SF+ V  WL + + 
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARS 103

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/38 (42%), Positives = 29/38 (76%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI 100

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWL 130
           RF S+T   YRG  G LL++D+T+  SF  +  WL
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWL 95

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 7/56 (12%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFM 151
           R+ ++T+  YRG +G LL++D+T   +F +V++WL +++        H +  IV M
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELR-------DHADSNIVIM 121

Length = 216

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
           RF SL    YRG    +L++DVTN  SF+ ++ W
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSW 94

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
           R+ +L    YR   G +L++D+T+ +SF+ V+KW+ ++K M G
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG 103

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF S+T+  YR   G +L++D+T + +F D+ KW+  I
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 98

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
           RF +LT+  YRG  G +L++DVT  ++F +++ WL ++  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDT 100

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF S+T   YR     LL++DVTN++SF ++  WL +I
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEI 99

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
           Y+ T G LL++DVT+  SF+ ++ WL ++K 
Sbjct: 70  YKDTQGVLLVYDVTDRQSFEALDSWLKEMKQ 100

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 107 GTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           G     L++D+TN  SF+++E WL  +K
Sbjct: 73  GAQAVCLVYDITNSQSFENLEDWLSVVK 100

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 97  FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWL 130
           F S+T   YRG  G LL++D+T   +F  +  WL
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWL 99

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWL 130
           RF ++T   YRG  G L+++D+T  +++  +  WL
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL 97

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
           RF  +T   Y+G +G +++FDVT  ++F+ V KW
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKW 95

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF ++     RG  G +L++D+TN  SF  +++W+ +I
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI 104

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 67  HGKTVGIVFPAISVTYSIGPRYFRFPLVS---RFLSLTTGLYRGTMGFLLIFDVTNENSF 123
           H  T+G+ F A  +T    P   +    +    F S+T   YRG  G LL++D+T   +F
Sbjct: 35  HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94

Query: 124 KDVEKWL 130
             +  WL
Sbjct: 95  NHLASWL 101

Length = 210

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ SL    YRG    ++++D+T+E SF+  + W+ +++
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQ 100

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+GI F + ++    GP   R  L       RF SL     R +   ++++D+TN  SF+
Sbjct: 12  TIGIDFLSKTLYLDEGP--VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 125 DVEKWLLQI 133
           +  KW+  I
Sbjct: 70  NTTKWIQDI 78

Length = 176

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 70  TVGIVFPAISVTYSIGPRYFRFPLV-----SRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+G + PA   T     R  +  L        + SL    YRG  G L+++D T   S  
Sbjct: 37  TIGNLDPA--KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSD 94

Query: 125 DV-EKWLLQIK 134
           ++ E+WL +++
Sbjct: 95  ELTEEWLEELR 105

Length = 219

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T   YR     +L +D+T E SF+ + +WL +I+
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 106

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG0084|consensus	205		100.0
KOG0098|consensus	216		100.0
KOG0087|consensus	222		100.0
KOG0078|consensus	207		100.0
KOG0080|consensus	209		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
KOG0079|consensus	198		100.0
KOG0095|consensus	213		100.0
KOG0086|consensus	214		100.0
KOG0091|consensus	213		100.0
KOG0093|consensus	193		99.98
KOG0081|consensus	219		99.97
KOG0088|consensus	218		99.97
KOG0394|consensus	210		99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
KOG0097|consensus	215		99.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.96
KOG0083|consensus	192		99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.95
PLN00023	334	GTP-binding protein; Provisional	99.94
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.94
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.94
KOG0395|consensus	196		99.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
PLN03110	216	Rab GTPase; Provisional	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
KOG0393|consensus	198		99.93
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.92
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.92
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.92
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.91
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.91
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.91
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.91
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.91
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.91
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.91
PLN03108	210	Rab family protein; Provisional	99.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.91
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.9
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.9
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.9
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.9
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.9
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.9
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.9
PTZ00099	176	rab6; Provisional	99.9
PTZ00369	189	Ras-like protein; Provisional	99.9
KOG4252|consensus	246		99.9
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.9
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.89
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.89
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.89
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.89
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.88
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.88
PLN03118	211	Rab family protein; Provisional	99.88
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.88
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.88
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.88
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.88
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.87
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.87
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.87
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.87
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.87
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.87
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.86
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.86
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.86
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.86
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.86
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.85
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.85
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.85
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.84
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.84
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.84
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.83
PLN00223	181	ADP-ribosylation factor; Provisional	99.82
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.82
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.82
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.82
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.82
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.82
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.8
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.8
PTZ00133	182	ADP-ribosylation factor; Provisional	99.8
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.8
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.79
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.78
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.77
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.77
COG1100	219	GTPase SAR1 and related small G proteins [General	99.77
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.76
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.76
KOG0096|consensus	216		99.75
KOG4423|consensus	229		99.73
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.73
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.73
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.72
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.71
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.71
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.71
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.7
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.7
KOG1673|consensus	205		99.68
KOG0070|consensus	181		99.68
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.66
KOG0073|consensus	185		99.66
KOG3883|consensus	198		99.65
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.62
KOG0071|consensus	180		99.6
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.59
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.58
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.56
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.53
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.49
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.47
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.47
KOG0075|consensus	186		99.46
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.45
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.4
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.4
PRK04213	201	GTP-binding protein; Provisional	99.4
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.33
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.32
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.32
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.31
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.27
PRK03003	472	GTP-binding protein Der; Reviewed	99.26
KOG0076|consensus	197		99.25
KOG0074|consensus	185		99.24
KOG1707|consensus	625		99.24
PRK03003	472	GTP-binding protein Der; Reviewed	99.24
PRK12299	335	obgE GTPase CgtA; Reviewed	99.23
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.23
KOG0072|consensus	182		99.22
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.19
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.18
PRK15494	339	era GTPase Era; Provisional	99.18
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.17
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.16
PRK11058	426	GTPase HflX; Provisional	99.15
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.13
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.11
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.08
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.08
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.08
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.07
PRK00093	435	GTP-binding protein Der; Reviewed	99.07
COG2229	187	Predicted GTPase [General function prediction only	99.03
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.03
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.02
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.01
cd00881	189	GTP_translation_factor GTP translation factor fami	99.0
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.99
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.98
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.97
PRK05306	787	infB translation initiation factor IF-2; Validated	98.94
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.93
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.91
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.9
CHL00189	742	infB translation initiation factor 2; Provisional	98.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.86
PRK12297	424	obgE GTPase CgtA; Reviewed	98.85
KOG0077|consensus	193		98.83
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.82
PRK04004	586	translation initiation factor IF-2; Validated	98.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.8
PRK12317	425	elongation factor 1-alpha; Reviewed	98.8
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.78
PRK05433	600	GTP-binding protein LepA; Provisional	98.77
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.77
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.74
PRK00093	435	GTP-binding protein Der; Reviewed	98.74
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.73
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.71
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.7
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.69
PRK12296	500	obgE GTPase CgtA; Reviewed	98.65
PRK13351	687	elongation factor G; Reviewed	98.64
KOG3886|consensus	295		98.63
PRK10218	607	GTP-binding protein; Provisional	98.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.62
PRK00089	292	era GTPase Era; Reviewed	98.62
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.61
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.6
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.59
PRK12298	390	obgE GTPase CgtA; Reviewed	98.53
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.48
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.47
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.43
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.43
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.42
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.42
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.4
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.38
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.36
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.36
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.28
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.23
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.22
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.16
PRK14845	1049	translation initiation factor IF-2; Provisional	98.15
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.12
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.08
PLN00043	447	elongation factor 1-alpha; Provisional	98.06
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.05
PRK12736	394	elongation factor Tu; Reviewed	98.04
KOG0090|consensus	238		98.03
PRK12735	396	elongation factor Tu; Reviewed	98.01
PLN03126	478	Elongation factor Tu; Provisional	97.93
PRK12740	668	elongation factor G; Reviewed	97.92
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.91
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.87
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.85
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.84
KOG1707|consensus	625		97.83
COG0486	454	ThdF Predicted GTPase [General function prediction	97.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	97.72
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.71
PRK12289	352	GTPase RsgA; Reviewed	97.66
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.58
PLN03127	447	Elongation factor Tu; Provisional	97.58
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.56
PRK12739	691	elongation factor G; Reviewed	97.49
CHL00071	409	tufA elongation factor Tu	97.45
PRK00049	396	elongation factor Tu; Reviewed	97.43
PRK00098	298	GTPase RsgA; Reviewed	97.41
COG1160	444	Predicted GTPases [General function prediction onl	97.4
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.35
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.25
PRK12288	347	GTPase RsgA; Reviewed	97.13
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.11
COG1160	444	Predicted GTPases [General function prediction onl	97.09
KOG1191|consensus	531		97.06
PRK00007	693	elongation factor G; Reviewed	97.03
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.99
PRK13768	253	GTPase; Provisional	96.96
COG1084	346	Predicted GTPase [General function prediction only	96.92
KOG4273|consensus	418		96.88
PTZ00141	446	elongation factor 1- alpha; Provisional	96.84
KOG0705|consensus	749		96.83
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	96.7
COG1159	298	Era GTPase [General function prediction only]	96.63
PRK09866	741	hypothetical protein; Provisional	96.61
PRK09602	396	translation-associated GTPase; Reviewed	96.58
COG0218	200	Predicted GTPase [General function prediction only	96.29
KOG1423|consensus	379		96.23
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	96.1
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	96.09
PRK13796	365	GTPase YqeH; Provisional	96.08
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.07
KOG1145|consensus	683		96.07
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.07
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.03
KOG0082|consensus	354		95.98
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.97
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	95.8
PTZ00416	836	elongation factor 2; Provisional	95.79
KOG1144|consensus	1064		95.63
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	95.57
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	95.56
PRK07560	731	elongation factor EF-2; Reviewed	95.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	95.52
KOG0462|consensus	650		95.48
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	95.42
COG0536	369	Obg Predicted GTPase [General function prediction	95.36
COG2262	411	HflX GTPases [General function prediction only]	95.34
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	95.2
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	95.14
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	95.13
KOG1489|consensus	366		94.49
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	94.49
KOG0468|consensus	971		94.39
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	94.12
COG3596	296	Predicted GTPase [General function prediction only	94.09
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	93.87
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	93.85
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	93.77
KOG3905|consensus	473		93.56
cd03110	179	Fer4_NifH_child This protein family's function is	93.33
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	93.25
COG1217	603	TypA Predicted membrane GTPase involved in stress	93.13
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	93.03
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	92.74
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	92.68
KOG0467|consensus	887		92.13
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	92.06
KOG3887|consensus	347		91.86
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	91.83
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	91.44
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	91.31
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	90.95
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	90.72
PRK01889	356	GTPase RsgA; Reviewed	90.2
COG0050	394	TufB GTPases - translation elongation factors [Tra	89.58
PRK09563	287	rbgA GTPase YlqF; Reviewed	89.4
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	88.35
COG1163	365	DRG Predicted GTPase [General function prediction	88.19
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	88.04
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	86.97
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	86.91
KOG1954|consensus	532		86.87
PRK09563	287	rbgA GTPase YlqF; Reviewed	86.84
KOG3929|consensus	363		86.15
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	85.7
PTZ00258	390	GTP-binding protein; Provisional	85.09
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	84.26
KOG1490|consensus	620		83.99
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	83.93
KOG0458|consensus	603		83.38
KOG1424|consensus	562		83.33
COG3523	1188	IcmF Type VI protein secretion system component Va	82.61
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	82.09
COG1161	322	Predicted GTPases [General function prediction onl	81.16

>KOG0084|consensus

Probab=100.00  E-value=2e-40  Score=248.58  Aligned_cols=136  Identities=24%  Similarity=0.400  Sum_probs=127.1

Q ss_pred             ccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036         36 AAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR  106 (179)
Q Consensus        36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~  106 (179)
                      ++.+++|+|||| |||+|||   ++.++. +.|.+.|..|||++|..+++.++ |+.+    |||+|||||+++..+|||
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQERFrtit~syYR   80 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQERFRTITSSYYR   80 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeeccccHHHhhhhHhhcc
Confidence            456899999998 9999999   555554 88999999999999999999999 9998    999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|||+|+|||+|+++||+++..|+.+++++...+      .|++|||||||+.++|.|+.++|++||.+...
T Consensus        81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~------v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~  146 (205)
T KOG0084|consen   81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN------VPKLLVGNKCDLTEKRVVSTEEAQEFADELGI  146 (205)
T ss_pred             CCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC------CCeEEEeeccccHhheecCHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999886      68899999999999999999999999998754

>KOG0098|consensus

Probab=100.00  E-value=5.6e-37  Score=228.05  Aligned_cols=134  Identities=25%  Similarity=0.427  Sum_probs=124.5

Q ss_pred             cCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .+++.||+| +||.|||    ++++....|.+.+..|+|++|..+.++++ ++++    |||+|||+|+++++.|||++.
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            467899998 9999999    44555588999999999999999999999 9998    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL  179 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~~  179 (179)
                      |++||||+++++||+.|..|+.+++++..++      ..|+|+|||+||+..|+|+.||+.+||++|+.|
T Consensus        81 GalLVydit~r~sF~hL~~wL~D~rq~~~~N------mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi  144 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHLTSWLEDARQHSNEN------MVIMLIGNKSDLEARREVSKEEGEAFAREHGLI  144 (216)
T ss_pred             ceEEEEEccchhhHHHHHHHHHHHHHhcCCC------cEEEEEcchhhhhccccccHHHHHHHHHHcCce
Confidence            9999999999999999999999999998665      688999999999999999999999999999864

>KOG0087|consensus

Probab=100.00  E-value=4.7e-37  Score=232.53  Aligned_cols=136  Identities=24%  Similarity=0.451  Sum_probs=126.5

Q ss_pred             ccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036         36 AAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR  106 (179)
Q Consensus        36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~  106 (179)
                      ..++++|.|||| |||++||   ++.++. +.|..+-.+|||++|..+.+.++ ++.+    |||+|||||+.+...|||
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-~k~vkaqIWDTAGQERyrAitSaYYr   85 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-GKTVKAQIWDTAGQERYRAITSAYYR   85 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-CcEEEEeeecccchhhhccccchhhc
Confidence            346899999998 9999999   555544 88999999999999999999999 9998    999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|.|++||||+|++.||+++.+|+.+++.+.+.+      .+++|||||+||.+.|.|+.+|++.||++++.
T Consensus        86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n------ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l  151 (222)
T KOG0087|consen   86 GAVGALLVYDITRRQTFENVERWLKELRDHADSN------IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL  151 (222)
T ss_pred             ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC------eEEEEeecchhhhhccccchhhhHhHHHhcCc
Confidence            9999999999999999999999999999999877      79999999999999999999999999998763

>KOG0078|consensus

Probab=100.00  E-value=2.4e-36  Score=229.10  Aligned_cols=133  Identities=25%  Similarity=0.427  Sum_probs=125.2

Q ss_pred             cCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .+++++||| +||++||    +.++..+.|...+..|+|++|..+.+.++ +..+    |||+||++|+.+...|||+|+
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-CeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            899999998 9999999    44455588999999999999999999999 9988    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +++||||++|+.||+++..|++.+.++.++.      ++++|||||+|++++|+|+.+.++++|.+.+.
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~------v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~  149 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHASDD------VVKILVGNKCDLEEKRQVSKERGEALAREYGI  149 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCCCC------CcEEEeeccccccccccccHHHHHHHHHHhCC
Confidence            9999999999999999999999999999876      79999999999999999999999999998763

>KOG0080|consensus

Probab=100.00  E-value=1.5e-36  Score=221.00  Aligned_cols=136  Identities=24%  Similarity=0.412  Sum_probs=123.8

Q ss_pred             ccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ..++.++||+ ||++|||    ++++..+.|.+....|||++|..+.++++ |..+    |||+|||+|+.+.++|||+|
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGqErFRtLTpSyyRga   84 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQERFRTLTPSYYRGA   84 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccchHhhhccCHhHhccC
Confidence            4677899998 9999999    55555577888888889999999999999 9998    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL  179 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~~  179 (179)
                      .|+|+|||+|.++||.++..|++++..++.+.     ....+|||||.|.+.+|.|+.+|+.+||++|++|
T Consensus        85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-----diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L  150 (209)
T KOG0080|consen   85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-----DIIKMLVGNKIDKESERVVDREEGLKFARKHRCL  150 (209)
T ss_pred             ceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-----cHhHhhhcccccchhcccccHHHHHHHHHhhCcE
Confidence            99999999999999999999999999887653     2566899999999999999999999999999875

>KOG0092|consensus

Probab=100.00  E-value=4.4e-35  Score=218.98  Aligned_cols=131  Identities=23%  Similarity=0.360  Sum_probs=121.9

Q ss_pred             eeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||| ||+.+||    ++|+..+.|++...||||..|..+.+.++ +..+    |||+|||+|+++.+.|||+++++|
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            579998 9999999    55666688999999999999999999999 8776    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL  179 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~~  179 (179)
                      +|||+|+.+||..++.|++++.+..+.+      ..|.|||||+||.+.|+|+.+|+++||++++.+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~------~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll  143 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPN------IVIALVGNKADLLERREVEFEEAQAYAESQGLL  143 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCC------eEEEEecchhhhhhcccccHHHHHHHHHhcCCE
Confidence            9999999999999999999999988876      678899999999999999999999999998864

>KOG0094|consensus

Probab=100.00  E-value=5.2e-35  Score=219.03  Aligned_cols=141  Identities=20%  Similarity=0.266  Sum_probs=123.6

Q ss_pred             ccccccccCceeeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhh
Q psy15036         32 TKMTAAKEFSFNFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTT  102 (179)
Q Consensus        32 ~~m~~~~~~~~~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~  102 (179)
                      ..|......-..+|+| ||+.+||   ++ ++..+.|...|.+|||++|.++++.+. +..+    |||+|||+|+++.+
T Consensus        11 ~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~-d~~vrLQlWDTAGQERFrslip   89 (221)
T KOG0094|consen   11 QTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIP   89 (221)
T ss_pred             HhccccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc-CcEEEEEEEecccHHHHhhhhh
Confidence            3333333333469999 9999999   44 445588999999999999999999999 9988    99999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      .|+|++.++|+|||++|++||++..+|++.+++..+.+     .+.|+|||||.||.++|+|+.+|+...|++...
T Consensus        90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-----~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a  160 (221)
T KOG0094|consen   90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-----DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA  160 (221)
T ss_pred             hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-----ceEEEEEcccccccchhhhhHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999877663     178899999999999999999999999998753

>KOG0079|consensus

Probab=100.00  E-value=3.1e-35  Score=211.59  Aligned_cols=133  Identities=28%  Similarity=0.422  Sum_probs=124.3

Q ss_pred             cccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG  107 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~  107 (179)
                      +.++++++|.+ |||+|||    ++++-.+.|...|..|+|++|..+++.++ |.++    ||++|||+|+.+...||++
T Consensus         2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrg   80 (198)
T KOG0079|consen    2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRG   80 (198)
T ss_pred             cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccC
Confidence            46788999997 9999999    55555688999999999999999999999 9998    9999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|++++|||+||.+||.++++|+++++..++.       .|.+|||||+|+.+.|.|..++|++||.+++
T Consensus        81 thgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-------v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg  143 (198)
T KOG0079|consen   81 THGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-------VPKVLVGNKNDDPERRVVDTEDARAFALQMG  143 (198)
T ss_pred             CceEEEEEECcchhhhHhHHHHHHHHHhcCcc-------ccceecccCCCCccceeeehHHHHHHHHhcC
Confidence            99999999999999999999999999998876       6889999999999999999999999999875

>KOG0095|consensus

Probab=100.00  E-value=5.4e-34  Score=205.71  Aligned_cols=132  Identities=24%  Similarity=0.404  Sum_probs=125.1

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ++|+|+|||| +|+.|||   +.+++. +.|++....|||++|..|++.++ |+++    |||+|||+|+++..+|||.+
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagqerfrsitqsyyrsa   80 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQERFRSITQSYYRSA   80 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence            5899999998 9999999   777776 88999999999999999999999 9998    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |++|||||++-..||+.+..|+.+|.++...+      ...||||||.|+.+.|+|+..-+++|++.|
T Consensus        81 halilvydiscqpsfdclpewlreie~yan~k------vlkilvgnk~d~~drrevp~qigeefs~~q  142 (213)
T KOG0095|consen   81 HALILVYDISCQPSFDCLPEWLREIEQYANNK------VLKILVGNKIDLADRREVPQQIGEEFSEAQ  142 (213)
T ss_pred             ceEEEEEecccCcchhhhHHHHHHHHHHhhcc------eEEEeeccccchhhhhhhhHHHHHHHHHhh
Confidence            99999999999999999999999999999887      678999999999999999999999999875

>KOG0086|consensus

Probab=100.00  E-value=5e-34  Score=206.51  Aligned_cols=134  Identities=25%  Similarity=0.429  Sum_probs=124.3

Q ss_pred             ccccCceeeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036         36 AAKEFSFNFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR  106 (179)
Q Consensus        36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~  106 (179)
                      +.+.|+|++|+| +|..|.|   ++.++ ...+..+..-|+|++|.++.+.++ ++.+    |||+|||+|++..++|||
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG-gK~vKLQIWDTAGQErFRSVtRsYYR   80 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG-GKTVKLQIWDTAGQERFRSVTRSYYR   80 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-CcEEEEEEeecccHHHHHHHHHHHhc
Confidence            457899999998 9999999   44444 477888888999999999999999 9988    999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ++.|.+||||+++++||+.+..|+..++...+++      +.++|+|||.||+.+|+|+..||..||++.
T Consensus        81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n------IvviL~GnKkDL~~~R~VtflEAs~FaqEn  144 (214)
T KOG0086|consen   81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPN------IVVILCGNKKDLDPEREVTFLEASRFAQEN  144 (214)
T ss_pred             cccceEEEEeccchhhHHHHHHHHHHHHhhCCCc------EEEEEeCChhhcChhhhhhHHHHHhhhccc
Confidence            9999999999999999999999999999999887      688999999999999999999999999874

>KOG0091|consensus

Probab=100.00  E-value=2.6e-33  Score=204.67  Aligned_cols=135  Identities=25%  Similarity=0.403  Sum_probs=121.8

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      -+.|.|+++ |||+.||   ++++++ +.+.+--.||+|++|+.+.+.+.||.++    |||+|||+|+++.++|||++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            467899998 9999999   777776 7788888999999999999999889988    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+++|||++|++||+.+..|+++...+....    ..+.+.|||+|+||..+|+|+.+||++||+.++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P----~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg  147 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGP----DKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG  147 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCC----CeeEEEEeccccchhhhccccHHHHHHHHHhcC
Confidence            9999999999999999999999998765421    126778999999999999999999999999886

>KOG0093|consensus

Probab=99.98  E-value=3.1e-32  Score=195.87  Aligned_cols=135  Identities=27%  Similarity=0.410  Sum_probs=122.6

Q ss_pred             ccccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036         36 AAKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR  106 (179)
Q Consensus        36 ~~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~  106 (179)
                      ..+.++|.+|++ +|++.||    +.+.....|...+..|+|++|..|++--. .+++    |||+|||+|+.+...|||
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~-~kRiklQiwDTagqEryrtiTTayyR   92 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS-DKRIKLQIWDTAGQERYRTITTAYYR   92 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec-ccEEEEEEEecccchhhhHHHHHHhh
Confidence            345788999998 9999999    44444577899999999999999988766 7777    999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|+|||||++|++||..++.|..+|..++-.+      .++|||||||||+++|.|+.|.++.||.+.+
T Consensus        93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~n------aqvilvgnKCDmd~eRvis~e~g~~l~~~LG  157 (193)
T KOG0093|consen   93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDN------AQVILVGNKCDMDSERVISHERGRQLADQLG  157 (193)
T ss_pred             ccceEEEEEecCCHHHHHHHHHHHHHheeeeccC------ceEEEEecccCCccceeeeHHHHHHHHHHhC
Confidence            9999999999999999999999999999887766      7999999999999999999999999999865

>KOG0081|consensus

Probab=99.97  E-value=3e-32  Score=198.40  Aligned_cols=134  Identities=30%  Similarity=0.417  Sum_probs=118.3

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC--------CCee----eeCCCchhchhhh
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI--------GPRY----FRFPLVSRFLSLT  101 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~--------~~~i----wDt~G~e~~~~~~  101 (179)
                      +|+|++|++ +||+|||   ++.++. +.|...+..|+|++|..|.+.++.        +.++    |||+|||+|+++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            789999999 9999999   454544 789999999999999988887741        1233    9999999999999


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      ..|||+|-|++|+||+|+++||-++.+|+.+++.+. .++      |-|+|+|||+||+++|+|++++++++|.+-+.
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~------PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl  156 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN------PDIVLCGNKADLEDQRVVSEDQAAALADKYGL  156 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC------CCEEEEcCccchhhhhhhhHHHHHHHHHHhCC
Confidence            999999999999999999999999999999998654 333      78999999999999999999999999998764

>KOG0088|consensus

Probab=99.97  E-value=2.8e-32  Score=198.43  Aligned_cols=133  Identities=25%  Similarity=0.377  Sum_probs=122.4

Q ss_pred             cCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ...+.||+| +|+..||    .+++..+.|...+..|+...|..+.+.+. +.+.    |||+|||+|..+-+.|||+++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErfHALGPIYYRgSn   87 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERFHALGPIYYRGSN   87 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhhhccCceEEeCCC
Confidence            456899998 9999999    56666688999999999999999999998 7776    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |++||||+|+++||+.++.|..++++..+..      ..+++||||+||+++|.|+.+||.++|+..++
T Consensus        88 GalLVyDITDrdSFqKVKnWV~Elr~mlGne------i~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA  150 (218)
T KOG0088|consen   88 GALLVYDITDRDSFQKVKNWVLELRTMLGNE------IELLIVGNKIDLEEERQVTRQEAEAYAESVGA  150 (218)
T ss_pred             ceEEEEeccchHHHHHHHHHHHHHHHHhCCe------eEEEEecCcccHHHhhhhhHHHHHHHHHhhch
Confidence            9999999999999999999999999998886      67889999999999999999999999998765

>KOG0394|consensus

Probab=99.97  E-value=4.1e-31  Score=196.41  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=117.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      .++||+ +||+|||   ++.+++ ..|...|..|||.+|..|.+.++ +..+    |||+|||+|+++...|||++|+++
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            479998 9999999   666666 66889999999999999999999 8887    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHhhhCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~~~~~  178 (179)
                      ||||+++++||++|..|.+++..+....-+  +.-|+||+|||.|+.+  .|+||...|++|+++++-
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P--e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn  152 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDP--ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN  152 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCC--CcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence            999999999999999999999876653211  1247888899999976  399999999999998764

>cd04121 Rab40 Rab40 subfamily

Probab=99.96  E-value=2.7e-29  Score=192.26  Aligned_cols=131  Identities=20%  Similarity=0.365  Sum_probs=116.5

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .+++.+||+ +|+.|||   ++.++. +.+.+.+.+|++.++..+.+.++ +..+    ||++|+++|..+++.|++++|
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~l~~~~~~~ad   80 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-GRRVKLQLWDTSGQGRFCTIFRSYSRGAQ   80 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            466789998 9999999   555555 66778888999999988888888 7766    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||+++..|++++.+..+.       +|+||||||+||.++|.|+.++++++|++.+
T Consensus        81 ~illVfD~t~~~Sf~~~~~w~~~i~~~~~~-------~piilVGNK~DL~~~~~v~~~~~~~~a~~~~  141 (189)
T cd04121          81 GIILVYDITNRWSFDGIDRWIKEIDEHAPG-------VPKILVGNRLHLAFKRQVATEQAQAYAERNG  141 (189)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECccchhccCCCHHHHHHHHHHcC
Confidence            999999999999999999999999876543       7899999999999999999999999998764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=1.5e-28  Score=187.13  Aligned_cols=128  Identities=15%  Similarity=0.149  Sum_probs=111.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|++|||   ++.++. +.|.+.|.||++..+ .+.+.++ +..+    |||+|+++|..+++.||++++++|
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~-~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEEC-CEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            578998 9999999   554444 778899999999766 4678888 7776    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036        113 LIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       113 lvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|||+++++||+++ ..|++++++..+.       +|++|||||+||.+            +|.|+.+|++++|++.+.
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~-------~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~  153 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPN-------TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA  153 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence            99999999999998 8999999887643       68999999999964            467999999999998763

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0097|consensus

Probab=99.96  E-value=2.9e-29  Score=179.92  Aligned_cols=133  Identities=22%  Similarity=0.436  Sum_probs=118.8

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .|+|.||.+ |||-|||   ++..+. ..|-.+-.-|+|++|..+.+.+. |+++    |||+|||+|+...++|||++.
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-gqkiklqiwdtagqerfravtrsyyrgaa   85 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTRSYYRGAA   85 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-CcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            567889998 9999999   444444 44555667799999999999999 9998    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +.++|||++.+.+++.++.|+...+..-.++      ..|+|+|||.||+.+|.|+.+|+++||++.+.
T Consensus        86 galmvyditrrstynhlsswl~dar~ltnpn------t~i~lignkadle~qrdv~yeeak~faeengl  148 (215)
T KOG0097|consen   86 GALMVYDITRRSTYNHLSSWLTDARNLTNPN------TVIFLIGNKADLESQRDVTYEEAKEFAEENGL  148 (215)
T ss_pred             ceeEEEEehhhhhhhhHHHHHhhhhccCCCc------eEEEEecchhhhhhcccCcHHHHHHHHhhcCe
Confidence            9999999999999999999999998876655      68999999999999999999999999998763

>cd04120 Rab12 Rab12 subfamily

Probab=99.96  E-value=1.6e-28  Score=189.85  Aligned_cols=125  Identities=22%  Similarity=0.382  Sum_probs=111.8

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .|+ +|++|||   ++.++. +.|.+.+.+|++.++..+.+.++ +..+    |||+|+++|+.+++.||++++++|+||
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            576 9999999   555544 77888999999999988889998 7666    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |+++++||++++.|++.+++....+      +|++|||||+||.++|+|+.+++.++|++.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~------~piilVgNK~DL~~~~~v~~~~~~~~a~~~  135 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASED------AELLLVGNKLDCETDREISRQQGEKFAQQI  135 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccccccccCHHHHHHHHHhc
Confidence            9999999999999999988765544      789999999999989999999999999864

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0083|consensus

Probab=99.95  E-value=6.4e-29  Score=176.44  Aligned_cols=124  Identities=23%  Similarity=0.311  Sum_probs=111.6

Q ss_pred             EEeCCCCc----eeEeeeccC-CCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeC
Q psy15036         47 QLGRRGIP----LLKHLKYLG-TGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDV  117 (179)
Q Consensus        47 vlG~~gvG----~~~~~~~~~-~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDi  117 (179)
                      ++||+++|    ++++-.+.| ...+.+|+|++|..|.+..+ +.++    |||+|||+|++....|||++|+++++||+
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            38999999    444444443 56788999999999999999 9998    99999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        118 TNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       118 t~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|+.||++++.|+.+|.++....      ..+.|+|||||+..+|.|..++++.+|+.-+
T Consensus        81 ankasfdn~~~wlsei~ey~k~~------v~l~llgnk~d~a~er~v~~ddg~kla~~y~  134 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEA------VALMLLGNKCDLAHERAVKRDDGEKLAEAYG  134 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhh------HhHhhhccccccchhhccccchHHHHHHHHC
Confidence            99999999999999999998876      5677899999999999999999999998754

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=5.2e-28  Score=183.18  Aligned_cols=125  Identities=17%  Similarity=0.194  Sum_probs=108.3

Q ss_pred             eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+.|||   ++.++ .+.|.++|.||++..+ .+.+.++ +..+    |||+|+++|+.+++.|+++++++|+|
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~-~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVD-GNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   79 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEEC-CEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence            6898 9999999   44444 4778889999999766 4667777 7776    99999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC----------CCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR----------EVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r----------~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++ ..|+.++++..+.       +|++|||||+||.++|          .|+.+|++++|++..
T Consensus        80 yd~~~~~Sf~~~~~~w~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  146 (176)
T cd04133          80 FSLISRASYENVLKKWVPELRHYAPN-------VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG  146 (176)
T ss_pred             EEcCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC
Confidence            999999999999 7899999876543       7899999999997654          599999999998765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=9.5e-28  Score=181.95  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=110.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|||   ++.++. +.|.+.|.||++..+ .+.+.++ +..+    |||+|+++|..+++.||++++++|+
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il   78 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEID-EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI   78 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEEC-CEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence            37898 9999999   555554 678889999998776 4678888 7776    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~  178 (179)
                      |||+++++||+++ ..|++++++..+.       +|++|||||+||.+            +|.|+.+|++++|++.+.
T Consensus        79 vfdit~~~Sf~~~~~~w~~~i~~~~~~-------~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~  149 (178)
T cd04131          79 CFDISRPETLDSVLKKWRGEIQEFCPN-------TKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA  149 (178)
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHCCC-------CCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence            9999999999996 8999999987654       68999999999964            467999999999998764

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=1.9e-27  Score=187.27  Aligned_cols=129  Identities=15%  Similarity=0.153  Sum_probs=111.9

Q ss_pred             ceeeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ ||+.|||   ++.++ .+.|.+.|.||++.++. +.+.++ +..+    |||+|+++|..+++.||++++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~-~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE-EQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC-CEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            4578998 9999999   55444 47788999999997774 567888 7776    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036        112 LLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       112 ilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~  178 (179)
                      |+|||+++++||+++ ..|++++++..+.       .|+||||||+||.+            +|.|+.+|+++||++++.
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~~-------~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~  161 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYCPS-------TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA  161 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence            999999999999985 8999999886643       68899999999964            478999999999998764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.95  E-value=5.7e-27  Score=179.34  Aligned_cols=126  Identities=14%  Similarity=0.131  Sum_probs=107.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++. +.|.+.|.||++..+ .+.+.++ +..+    |||+|+++|+.+++.||+++|++|+
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVD-GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEEC-CEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            48998 9999999   554444 778889999999665 4566777 7766    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++. .|++++.+..+.       +|++|||||+||.+.            +.|+.++++++|++.+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~~-------~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  150 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCPN-------VPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH  150 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            99999999999996 699988765433       689999999999765            4589999999998765

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1.7e-26  Score=188.11  Aligned_cols=139  Identities=12%  Similarity=0.131  Sum_probs=112.4

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCC-------------Cee----eeCCCchhc
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIG-------------PRY----FRFPLVSRF   97 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~-------------~~i----wDt~G~e~~   97 (179)
                      ....+||+ +|+.|||   +++++. +.+...+.+|+|.++..+.+.++ +             ..+    ||++|+++|
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~-~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYG-SPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEEC-CcccccccccccCCceEEEEEEECCCChhh
Confidence            34579998 9999999   665555 66788899999999887878775 3             233    999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCcc------CccccceEEEEeeCCCcCCCC---C---CC
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALF------THFELQIVFMRGCLELLQRCR---E---VV  165 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~------~~~~~~~iilvGnK~Dl~~~r---~---Vs  165 (179)
                      +.+++.||++++++|+|||+++++||+++..|++++.+......      +....+|++|||||+||..++   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987642100      000126899999999997653   3   46


Q ss_pred             HHHHHHHHhhhCCC
Q psy15036        166 TPDQIMFGSTQSSL  179 (179)
Q Consensus       166 ~~e~~~~a~~~~~~  179 (179)
                      .+++++||++++.+
T Consensus       177 ~e~a~~~A~~~g~l  190 (334)
T PLN00023        177 VDAARQWVEKQGLL  190 (334)
T ss_pred             HHHHHHHHHHcCCC
Confidence            89999999998753

>cd04122 Rab14 Rab14 subfamily

Probab=99.94  E-value=2.5e-26  Score=171.27  Aligned_cols=129  Identities=21%  Similarity=0.433  Sum_probs=113.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      +.+||+ +|++|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..++++++++|
T Consensus         1 ~~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T cd04122           1 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVN-GQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   79 (166)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            358998 9999999   555555 56778888999999887888888 7665    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++..|+++++.....+      .|+++||||+|+.+++.++.++++++|++..
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~  138 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNLTNPN------TVIFLIGNKADLEAQRDVTYEEAKQFADENG  138 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccCcCHHHHHHHHHHcC
Confidence            9999999999999999999998765444      6899999999999999999999999998754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.94  E-value=1.9e-26  Score=178.23  Aligned_cols=134  Identities=16%  Similarity=0.136  Sum_probs=106.0

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC----CCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI----GPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~----~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      +||+ +|++|||   ++.++. +.|.+.+.||+|.++..+.+.++.    +..+    ||++|+++|..+++.||+++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            4887 9999999   555554 667888999999888877777741    3444    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCcc-------------CccccceEEEEeeCCCcCCCCCCCHHH----HHHHH
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALF-------------THFELQIVFMRGCLELLQRCREVVTPD----QIMFG  173 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~-------------~~~~~~~iilvGnK~Dl~~~r~Vs~~e----~~~~a  173 (179)
                      +|+|||+++++||+++..|++++.+......             ...+..|++|||||+||.++|.++.++    +..+|
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            9999999999999999999999986532100             001237899999999998888888774    44455


Q ss_pred             hhhC
Q psy15036        174 STQS  177 (179)
Q Consensus       174 ~~~~  177 (179)
                      ++.+
T Consensus       161 ~~~~  164 (202)
T cd04102         161 EQGN  164 (202)
T ss_pred             HhcC
Confidence            5544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=2.7e-26  Score=169.82  Aligned_cols=126  Identities=25%  Similarity=0.319  Sum_probs=115.5

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|+.+||   +++.+. ..+.+.+.+|+|.+...+.+.++ +..+    ||++|+++|..++..++++++++|+||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f   79 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF   79 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            787 9999999   555555 66889999999999998999998 8887    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+++++||+++..|++.+....+.+      +|++|||||+|+.++|+|+.++++++|+++.
T Consensus        80 d~~~~~S~~~~~~~~~~i~~~~~~~------~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~  135 (162)
T PF00071_consen   80 DVTDEESFENLKKWLEEIQKYKPED------IPIIVVGNKSDLSDEREVSVEEAQEFAKELG  135 (162)
T ss_dssp             ETTBHHHHHTHHHHHHHHHHHSTTT------SEEEEEEETTTGGGGSSSCHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccc------ccceeeeccccccccccchhhHHHHHHHHhC
Confidence            9999999999999999999988754      7999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0395|consensus

Probab=99.93  E-value=1.6e-25  Score=172.19  Aligned_cols=129  Identities=19%  Similarity=0.202  Sum_probs=116.6

Q ss_pred             eeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|.+|||    .++++...|.+.|.||++ +.+.+.+.++ +..+    +||+|+++|..+...|++.+||+++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~-~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVD-GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEEC-CEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            68997 9999999    667777999999999999 6667999999 8887    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      ||+++++.||+.++.+++++.+.....     ..|++|||||+||.++|+|+.+|++++|....+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~-----~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~  140 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRD-----DVPIILVGNKCDLERERQVSEEEGKALARSWGC  140 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcC-----CCCEEEEEEcccchhccccCHHHHHHHHHhcCC
Confidence            999999999999999999996655543     169999999999999999999999999988764

>cd04117 Rab15 Rab15 subfamily

Probab=99.93  E-value=1.7e-25  Score=166.39  Aligned_cols=127  Identities=19%  Similarity=0.326  Sum_probs=111.6

Q ss_pred             eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++ ...+.+.+.||++.++..+.+.++ +..+    ||++|+++|..+.+.+++++|++++|
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-GIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV   79 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence            5887 9999999   55444 466788899999998887888888 7654    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+.+..|++++.+....+      .|+++||||.||.++|.++.+++..+|+...
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~~~------~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~  136 (161)
T cd04117          80 YDISSERSYQHIMKWVSDVDEYAPEG------VQKILIGNKADEEQKRQVGDEQGNKLAKEYG  136 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence            99999999999999999998776544      7899999999999999999999999998654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=1.3e-25  Score=169.62  Aligned_cols=126  Identities=19%  Similarity=0.198  Sum_probs=106.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ++||+ +|+.|||   ++.++. +.|.+.|.||++..+. +.+.++ +..+    ||++|+++|..++..++++++++|+
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il   78 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   78 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEEC-CEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence            47998 9999999   554544 6788899999997664 557777 7665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++. .|+.++++..+.       .|++|||||+|+.++            |.|+.+++.++|++..
T Consensus        79 v~d~~~~~s~~~~~~~w~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~  148 (175)
T cd01874          79 CFSVVSPSSFENVKEKWVPEITHHCPK-------TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK  148 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence            99999999999996 699998876533       688999999999653            7899999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=3.4e-25  Score=166.89  Aligned_cols=132  Identities=30%  Similarity=0.414  Sum_probs=111.6

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC---------CCee----eeCCCchhchhhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI---------GPRY----FRFPLVSRFLSLTT  102 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~---------~~~i----wDt~G~e~~~~~~~  102 (179)
                      ++.+||+ +|++|||   ++.++. ..+.+.+.+|++.++..+.+.+.+         +..+    ||++|+++|..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            4689998 9999999   555554 668888999999988777676641         1223    99999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      .+++++|++++|||+++++||.++..|+.++.+.....     .+|+++||||+|+.+.|.++.+++.++|++..
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~  151 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE-----NPDIVLCGNKADLEDQRQVSEEQAKALADKYG  151 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEeCccchhcCccCHHHHHHHHHHcC
Confidence            99999999999999999999999999999998764321     17899999999999889999999999998764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03110 Rab GTPase; Provisional

Probab=99.93  E-value=5.8e-25  Score=171.39  Aligned_cols=132  Identities=22%  Similarity=0.455  Sum_probs=116.3

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ++++.+||+ +|++|||   ++.++. ..+...+.+|+|.++..+.+.++ +..+    ||++|+++|..+...++++++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~   86 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAV   86 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence            466889998 9999999   555554 55667888999999988889888 7655    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||+++..|+..+++....+      .|+++||||+||.++|.++.++++.+++...
T Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~------~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~  148 (216)
T PLN03110         87 GALLVYDITKRQTFDNVQRWLRELRDHADSN------IVIMMAGNKSDLNHLRSVAEEDGQALAEKEG  148 (216)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhCCCC------CeEEEEEEChhcccccCCCHHHHHHHHHHcC
Confidence            9999999999999999999999998876554      7899999999999999999999999987653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=5.6e-25  Score=164.18  Aligned_cols=130  Identities=23%  Similarity=0.397  Sum_probs=114.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ++.+||+ +|++|||   ++.++. ..+.+.+.||++.++..+.+.++ +..+    ||++|+++|..++..+++++|++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~   79 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence            4689998 9999999   555555 66788999999998887888888 7655    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+.+..|+..+.+....+      .|+++||||+|+.+.+.++.+++.++|+++.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  139 (167)
T cd01867          80 ILVYDITDEKSFENIRNWMRNIEEHASED------VERMLVGNKCDMEEKRVVSKEEGEALADEYG  139 (167)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhCCCC------CcEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence            99999999999999999999998875544      6889999999999888999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04128 Spg1 Spg1p

Probab=99.93  E-value=3.5e-25  Score=168.41  Aligned_cols=126  Identities=15%  Similarity=0.245  Sum_probs=105.3

Q ss_pred             eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++ .+.|.+.|.||+|.++..+.+.++ +..+    ||++|+++|..+++.++++++++++|
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv   79 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLVCNDAVAILFM   79 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence            5887 9999999   55555 467888899999999988889888 8766    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-----CCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-----CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-----~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+.++++..+..      +| ||||||+||..     ++.+..+++.++|+...
T Consensus        80 ~D~t~~~s~~~i~~~~~~~~~~~~~~------~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~  140 (182)
T cd04128          80 FDLTRKSTLNSIKEWYRQARGFNKTA------IP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK  140 (182)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCC------CE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC
Confidence            99999999999999999998775543      56 67899999942     22233578888887654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.93  E-value=4.6e-25  Score=172.70  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=106.8

Q ss_pred             eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ ||+.|||   ++.++ ...|.+.|.||++.++. +.+.++ +..+    |||+|+++|..+++.+|+++|++|+|
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~-~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEID-KRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEEC-CEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            6897 9999999   55444 46788899999987764 677888 7776    99999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhCC
Q psy15036        115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQSS  178 (179)
Q Consensus       115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~~  178 (179)
                      ||+++++||+++ ..|..+++...+.       .|+||||||+||.+.            ..|+.+++..+|++.++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~-------~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~  149 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPN-------AKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA  149 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence            999999999999 5788887765543       689999999999652            24899999999998763

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=7.1e-25  Score=168.73  Aligned_cols=132  Identities=18%  Similarity=0.237  Sum_probs=109.7

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   +++++. ..+...+.||++.++..+.+.++++..+    ||++|+++|..+++.||++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5897 9999999   555554 6677889999999988777777524444    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+.++.......  .....|++|||||+|+.+++.++.+++.+++++.+
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  141 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLP--NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG  141 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhccc--CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence            99999999999999999987643210  00126889999999998788999999999998765

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=5.3e-25  Score=165.74  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=108.7

Q ss_pred             eeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|||   ++.++ ...+.+.+.||++..+ .+.+.++ +..+    ||++|+++|..++..++++++++|+
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il   79 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARID-NEPALLDILDTAGQAEFTAMRDQYMRCGEGFII   79 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEEC-CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence            47997 9999999   55444 4677788999998655 4567777 7665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+..+.+... .+      .|++|||||+|+.++|.++.+++.++|++.+
T Consensus        80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~------~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~  138 (172)
T cd04141          80 CYSVTDRHSFQEASEFKKLITRVRLTED------IPLVLVGNKVDLESQRQVTTEEGRNLAREFN  138 (172)
T ss_pred             EEECCchhHHHHHHHHHHHHHHhcCCCC------CCEEEEEEChhhhhcCccCHHHHHHHHHHhC
Confidence            9999999999999999998877543 23      6899999999998889999999999998764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0393|consensus

Probab=99.93  E-value=6.6e-25  Score=167.00  Aligned_cols=128  Identities=20%  Similarity=0.153  Sum_probs=113.0

Q ss_pred             eeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEe-cCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         42 FNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTY-SIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~-~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ..+|+| +||++||    ++.+-.+.|++.|.||+- +-+...+.+ + |+.+    |||+|||.|..+++..|.++|++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~d-g~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDD-GKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecC-CCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            468998 9999999    555555889999999997 445678888 6 8887    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhCC
Q psy15036        112 LLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQSS  178 (179)
Q Consensus       112 ilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~~  178 (179)
                      ++||++.+++||+++ .+|+.+++.+++.       .|+||||+|.||++.            ..|+.+++.++|++.++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~-------vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga  153 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCPN-------VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA  153 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCCC-------CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc
Confidence            999999999999998 6999999999977       699999999999742            36999999999998874

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=1.2e-24  Score=169.35  Aligned_cols=130  Identities=21%  Similarity=0.259  Sum_probs=111.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCC-Cee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIG-PRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~-~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      +||+ +|+++||   ++.++. ..+...+.||++.+++.+.+.++ + ..+    ||++|++.|..+...|++++|++|+
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil   79 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLP-GNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL   79 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeC-CCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence            5897 9999999   555554 66788999999999988888886 4 333    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|++.+.+.....   ...+|+++||||+||.++|.++.+++.++++..+
T Consensus        80 V~D~t~~~s~~~~~~w~~~l~~~~~~~---~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~  140 (215)
T cd04109          80 VYDVTNSQSFENLEDWYSMVRKVLKSS---ETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG  140 (215)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccc---CCCceEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            999999999999999999998875431   0126889999999998889999999999998754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.92  E-value=6.7e-25  Score=168.72  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=100.1

Q ss_pred             eeEEE-EeCCCCc---ee-Eeee------ccCCCcccCccee-eeeEEE--------EEecCCCee----eeCCCchhch
Q psy15036         43 NFGTQ-LGRRGIP---LL-KHLK------YLGTGTHGKTVGI-VFPAIS--------VTYSIGPRY----FRFPLVSRFL   98 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~-~~~~------~~~~~~~~~Ti~~-~~~~k~--------v~~~~~~~i----wDt~G~e~~~   98 (179)
                      .+||+ +|+.|||   ++ +++.      ..+.+.|.||++. +.+...        +.++ +..+    |||+|++++ 
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~-~~~v~l~iwDTaG~~~~-   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD-GVSVSLRLWDTFGDHDK-   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeC-CEEEEEEEEeCCCChhh-
Confidence            47998 9999999   54 3332      3356788999973 333222        2466 7776    999999863 


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC-----------------
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-----------------  160 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-----------------  160 (179)
                       +++.||++++++|+|||+++++||+++. .|++++++..+.       +|++|||||+||.+                 
T Consensus        80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~-------~piilvgNK~DL~~~~~~~~~~~~~~~~~~~  151 (195)
T cd01873          80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR-------VPVILVGCKLDLRYADLDEVNRARRPLARPI  151 (195)
T ss_pred             -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCC-------CCEEEEEEchhccccccchhhhccccccccc
Confidence             6778999999999999999999999996 699999876543       68899999999964                 


Q ss_pred             --CCCCCHHHHHHHHhhhCC
Q psy15036        161 --CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       161 --~r~Vs~~e~~~~a~~~~~  178 (179)
                        +|.|+.+|++++|++.+.
T Consensus       152 ~~~~~V~~~e~~~~a~~~~~  171 (195)
T cd01873         152 KNADILPPETGRAVAKELGI  171 (195)
T ss_pred             ccCCccCHHHHHHHHHHhCC
Confidence              589999999999998753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04111 Rab39 Rab39 subfamily

Probab=99.92  E-value=2e-24  Score=167.89  Aligned_cols=131  Identities=25%  Similarity=0.373  Sum_probs=112.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      +.+||+ +|++|||   +++++. ..+...+.||++.++..+.+.+.++..+    ||++|+++|..+...|++++++++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            468998 9999999   555555 5567778899999998888887525544    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++..|++++.+.....     .+|++|||||+|+...+.++.+++.+++++.+
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~-----~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~  140 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPH-----RPVFILVGHKCDLESQRQVTREEAEKLAKDLG  140 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCeEEEEEEccccccccccCHHHHHHHHHHhC
Confidence            9999999999999999999998765332     16889999999998889999999999998764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=2.1e-24  Score=160.80  Aligned_cols=127  Identities=28%  Similarity=0.385  Sum_probs=110.3

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+++||   +++++. ..+...+.||++.++..+.+..+ +..+    ||++|+++|..++..++++++++++|
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v   80 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence            7998 9999999   665655 55677889999988877777766 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+.+..|++.+.+.....      +|+++||||+||.+++.++.+++.+++++..
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~------~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~  137 (165)
T cd01865          81 YDITNEESFNAVQDWSTQIKTYSWDN------AQVILVGNKCDMEDERVVSSERGRQLADQLG  137 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCC------CCEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence            99999999999999999998766544      6899999999998888999999999987643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=4.9e-24  Score=158.58  Aligned_cols=130  Identities=21%  Similarity=0.409  Sum_probs=112.8

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ++.+||+ +|+.|+|   ++.++. +.+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++.+|++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   79 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSYYRSANGA   79 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence            3679998 9999999   555554 66777888999988877888888 7543    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+.+..|+..+......+      +|+++||||+|+.+.+.+..+++.++++..+
T Consensus        80 llv~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  139 (165)
T cd01864          80 IIAYDITRRSSFESVPHWIEEVEKYGASN------VVLLLIGNKCDLEEQREVLFEEACTLAEKNG  139 (165)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhCCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999998765444      6889999999999888999999999998754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.92  E-value=2.6e-24  Score=168.27  Aligned_cols=124  Identities=20%  Similarity=0.176  Sum_probs=102.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      +||+ +|+.+||   ++.++. ..|. .+.||++.++..+.+  . ...+  ||++|+++|..++..|+++++++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~Tig~~~~~~~~--~-~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW--G-PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC-CCCCccceEEEEEEe--e-EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            5887 9999999   555554 5454 468999987764433  3 3333  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-------------------CCCCCHHHHHHHHhhhC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-------------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-------------------~r~Vs~~e~~~~a~~~~  177 (179)
                      +++++||+++..|+..+.+....+      +|+||||||+||.+                   +|+|+.+|++.+|++..
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~------~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~  150 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANED------CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN  150 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence            999999999998888887654443      68999999999976                   79999999999998864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04110 Rab35 Rab35 subfamily

Probab=99.91  E-value=6e-24  Score=163.48  Aligned_cols=130  Identities=27%  Similarity=0.412  Sum_probs=112.3

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      +++.+||+ +|++|||   ++.++. ..+...+.||++.++..+.+.++ +..+    ||++|+++|..++..+++++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~   81 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GERVKLQIWDTAGQERFRTITSTYYRGTHG   81 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEEC-CEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence            45689998 9999999   555554 55677889999998887888887 7554    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+.+..|++.+......       .|++|||||+|+...+.++.+++..++++..
T Consensus        82 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-------~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~  141 (199)
T cd04110          82 VIVVYDVTNGESFVNVKRWLQEIEQNCDD-------VCKVLVGNKNDDPERKVVETEDAYKFAGQMG  141 (199)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999998876544       6888999999998888899999999987643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.91  E-value=6e-24  Score=158.12  Aligned_cols=129  Identities=24%  Similarity=0.389  Sum_probs=112.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      +.+||+ +|++|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..++++++++|
T Consensus         1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii   79 (166)
T cd01869           1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII   79 (166)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence            368998 9999999   555554 55677889999988888888887 7654    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++..|+..+.+....+      .|+++||||+|+.+.+.++.++++.++++..
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  138 (166)
T cd01869          80 IVYDVTDQESFNNVKQWLQEIDRYASEN------VNKLLVGNKCDLTDKRVVDYSEAQEFADELG  138 (166)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCC------CcEEEEEEChhcccccCCCHHHHHHHHHHcC
Confidence            9999999999999999999998876443      6889999999998888999999999998654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.91  E-value=6e-24  Score=159.73  Aligned_cols=126  Identities=17%  Similarity=0.322  Sum_probs=106.6

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|+.|||   +++++. +.|.++|.||++.++..+.+.++ +..+    |||+|+++|..++..+++++|++++||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   80 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF   80 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence            787 9999999   555544 66888999999999887888888 7665    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCC--CCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCRE--VVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~--Vs~~e~~~~a~~~~  177 (179)
                      |+++++||+.+..|++++.+.. +..      +|+++||||.|+.+++.  +..+++.+++++..
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~  139 (170)
T cd04108          81 DLTDVASLEHTRQWLEDALKENDPSS------VLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ  139 (170)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhcCCCC------CeEEEEEEChhcCccccccccHHHHHHHHHHcC
Confidence            9999999999999999987654 333      68899999999966544  46778888887643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.91  E-value=4.8e-24  Score=160.87  Aligned_cols=125  Identities=18%  Similarity=0.187  Sum_probs=104.7

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. +.+.++|.||++..+ .+.+.++ +..+    |||+|+++|..+++.+++++|++|+|
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEEC-CEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            6897 9999999   554444 678889999997544 4566777 7655    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++. .|+..+....+ +      .|++|||||+||.++            +.|+.+|+.++|++..
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~~-~------~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  148 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHCP-N------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  148 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC-C------CCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            9999999999995 79998877543 3      689999999999643            4699999999998765

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=1.3e-23  Score=157.04  Aligned_cols=131  Identities=24%  Similarity=0.415  Sum_probs=113.0

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      |++.+||+ +|+++||   ++.++. ..+...+.+|.+.++..+.+.++ +..+    ||++|+++|..+...+++++++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   79 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQESFRSITRSYYRGAAG   79 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence            56789997 9999999   555555 55667778899988877788887 7554    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+.+..|+..+++....+      .|+++||||.|+..++.++.++++.++.+..
T Consensus        80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~  140 (168)
T cd01866          80 ALLVYDITRRETFNHLTSWLEDARQHSNSN------MTIMLIGNKCDLESRREVSYEEGEAFAKEHG  140 (168)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence            999999999999999999999998875444      6899999999998888999999999987653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04125 RabA_like RabA-like subfamily

Probab=99.91  E-value=1e-23  Score=160.37  Aligned_cols=127  Identities=24%  Similarity=0.354  Sum_probs=111.1

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..++++++++|+|
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv   79 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-NKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV   79 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence            5897 9999999   555555 55667789999988887888887 7665    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+.++.+.....      +|+++||||+|+.+.+.++.++++.+++...
T Consensus        80 ~d~~~~~s~~~i~~~~~~i~~~~~~~------~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~  136 (188)
T cd04125          80 YDVTDQESFENLKFWINEINRYAREN------VIKVIVANKSDLVNNKVVDSNIAKSFCDSLN  136 (188)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECCCCcccccCCHHHHHHHHHHcC
Confidence            99999999999999999999876554      6889999999999889999999999987643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.91  E-value=9.4e-24  Score=164.98  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=106.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|++|||   ++.++ .+.+...+.||+|.++..+.+..+ +..+    |||+|+++|..++..||++++++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            4579998 9999999   55544 477888899999998887777776 6555    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |+|||+++++||+++..|++++++....       .|++|||||+|+.. +.++.+++ .++++.
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~~~-------~piilvgNK~Dl~~-~~v~~~~~-~~~~~~  145 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGNKVDVKN-RQVKAKQV-TFHRKK  145 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCC-------CcEEEEEEchhhhh-ccCCHHHH-HHHHhc
Confidence            9999999999999999999999876543       68999999999964 66776666 666543

>cd01868 Rab11_like Rab11-like

Probab=99.91  E-value=1.2e-23  Score=156.11  Aligned_cols=128  Identities=24%  Similarity=0.470  Sum_probs=112.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      +.+||+ +|+++||   +++++. ..+...+.||++.++..+.+.++ +..+    ||++|+++|..+.+.++++++++|
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            578997 9999999   665555 55667788999998888888888 7654    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      +|||+++++||+++..|+..+++....+      +|+++||||+|+...+.+..++...++.+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~  138 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTEEAKAFAEKN  138 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECccccccccCCHHHHHHHHHHc
Confidence            9999999999999999999998876554      689999999999888999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.91  E-value=1e-23  Score=156.03  Aligned_cols=132  Identities=21%  Similarity=0.366  Sum_probs=111.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. ..+.+.+.||++.++..+.+.++ +..+    |||+|+++|..+++.++++++++|+|
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV   79 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence            5887 9999999   555555 55778899999999888888887 7666    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+.+..|+.++.+..... .....+|+++||||+|+.+++.++.++++.++++.+
T Consensus        80 ~D~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  141 (168)
T cd04119          80 YDVTDRQSFEALDSWLKEMKQEGGPH-GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG  141 (168)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhcccc-ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC
Confidence            99999999999999999998775421 001127899999999998778999999999988654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PLN03108 Rab family protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=163.45  Aligned_cols=131  Identities=24%  Similarity=0.393  Sum_probs=114.9

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      +++.+||+ +|+.|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..+++++|+
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~   81 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            45789998 9999999   666665 44677788999999888888888 7665    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+++..|+..+.+.....      .|+++||||+||.++|.++.+++.++++++.
T Consensus        82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~------~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (210)
T PLN03108         82 ALLVYDITRRETFNHLASWLEDARQHANAN------MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG  142 (210)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECccCccccCCCHHHHHHHHHHcC
Confidence            999999999999999999999987765544      6899999999999989999999999998754

>cd04136 Rap_like Rap-like subfamily

Probab=99.91  E-value=7.6e-24  Score=156.53  Aligned_cols=127  Identities=16%  Similarity=0.181  Sum_probs=106.6

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. +.+.+.+.||++ +...+.+.++ +..+    |||+|+++|..+++.|+++++++++|
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVD-GQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEEC-CEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            7997 9999999   555444 667788889987 4445777787 7654    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|++.+.+.....     ..|+++||||+|+.+++.++.+++.+++++..
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  137 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTE-----NVPMVLVGNKCDLEDERVVSREEGQALARQWG  137 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccceecHHHHHHHHHHcC
Confidence            99999999999999999998764321     16888999999998888999999998887643

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=1.3e-23  Score=162.23  Aligned_cols=119  Identities=18%  Similarity=0.220  Sum_probs=101.3

Q ss_pred             EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCCC
Q psy15036         48 LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN  119 (179)
Q Consensus        48 lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit~  119 (179)
                      +|++|||   ++.++. +.+.+.+.||+|.++..+.+.++ +..+    |||+|+++|..+++.||++++++|+|||+++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~   79 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA   79 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence            6999999   555544 66788899999999988888887 7665    9999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        120 ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       120 ~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ++||+++..|++++++....       .|++|||||+||.. |.++.++ .+++++.
T Consensus        80 ~~S~~~i~~w~~~i~~~~~~-------~piilvgNK~Dl~~-~~v~~~~-~~~~~~~  127 (200)
T smart00176       80 RVTYKNVPNWHRDLVRVCEN-------IPIVLCGNKVDVKD-RKVKAKS-ITFHRKK  127 (200)
T ss_pred             hHHHHHHHHHHHHHHHhCCC-------CCEEEEEECccccc-ccCCHHH-HHHHHHc
Confidence            99999999999999987543       68999999999964 6777655 4676653

Ran is involved in the active transport of proteins through nuclear pores.

>cd04116 Rab9 Rab9 subfamily

Probab=99.90  E-value=3.9e-23  Score=154.30  Aligned_cols=132  Identities=21%  Similarity=0.245  Sum_probs=111.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+++||   ++.++. ..+.+.+.+|++.++..+.+.++ +..+    ||++|+++|..++..+++++++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            579998 9999999   555554 66777788999988877888888 7766    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+.++.+.....  ..+..|++|||||+|+. +|.++.+++++++++..
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~  144 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVK--EPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENG  144 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccc--cCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCC
Confidence            9999999999999999999987754321  00126889999999997 68999999999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.90  E-value=2.7e-23  Score=153.60  Aligned_cols=127  Identities=16%  Similarity=0.243  Sum_probs=107.4

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC-CCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI-GPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~-~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      +||+ +|++++|   ++.++. ..+.+.+.||++.++..+.+.+.. +..+    ||++|+++|..++..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            4897 9999999   555555 557788899999888766666541 2222    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+.+..|+..+.+....       .|+++||||+|+..++.++.+++..++++.+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~-------~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~  137 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGD-------IPMVLVQTKIDLLDQAVITNEEAEALAKRLQ  137 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhcccccCCCHHHHHHHHHHcC
Confidence            99999999999999999999865543       6889999999998889999999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04134 Rho3 Rho3 subfamily

Probab=99.90  E-value=2.1e-23  Score=159.23  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=103.2

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|++|||   ++.++. +.+...+.||++.++. +.+.++ +..+    ||++|+++|..+++.+|++++++|+||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVD-GLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEEC-CEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            787 9999999   554444 6677888999987764 556677 6554    999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC------------CCCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR------------EVVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r------------~Vs~~e~~~~a~~~~  177 (179)
                      |+++++||+++. .|+..+.+..+.       .|++|||||+||.+.+            .++.+++.++|++..
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~-------~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPG-------VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN  147 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            999999999996 699999876543       6899999999997654            478889999987654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.90  E-value=3e-23  Score=153.74  Aligned_cols=126  Identities=17%  Similarity=0.231  Sum_probs=106.4

Q ss_pred             eeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++ +...+.+.+.+.||++ ++..+.+.++ +..+    ||++|+++|..++..|+++++++++
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~   78 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVD-SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV   78 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEEC-CEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence            37897 9999999   44 4444667788888886 5566778887 7654    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |||+++++||+++..|+..+.+... .+      .|+++||||+|+..++.++.+++..+++..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piviv~nK~Dl~~~~~~~~~~~~~~~~~~  136 (163)
T cd04176          79 VYSLVNQQTFQDIKPMRDQIVRVKGYEK------VPIILVGNKVDLESEREVSSAEGRALAEEW  136 (163)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECccchhcCccCHHHHHHHHHHh
Confidence            9999999999999999999987643 22      688899999999888889988899888754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04144 Ras2 Ras2 subfamily

Probab=99.90  E-value=1.8e-23  Score=159.60  Aligned_cols=128  Identities=20%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|+.|||   ++.++. +.+...+.||++..+ .+.+.++ +..+    |||+|+++|..++..||+++|++|+||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVD-GQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY   78 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence            576 9999999   555554 567788999998655 4556677 6654    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+++++||+++..|+..+.+.....   ....|++|||||+|+.+++.++.+++.+++++.+
T Consensus        79 d~~~~~s~~~~~~~~~~i~~~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~  137 (190)
T cd04144          79 SITSRSTFERVERFREQIQRVKDES---AADVPIMIVGNKCDKVYEREVSTEEGAALARRLG  137 (190)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhccc---CCCCCEEEEEEChhccccCccCHHHHHHHHHHhC
Confidence            9999999999999999998764321   0116888999999998889999999999987654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.90  E-value=5e-23  Score=154.17  Aligned_cols=129  Identities=21%  Similarity=0.237  Sum_probs=110.3

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhch-hhhhhhhcCCcEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFL-SLTTGLYRGTMGFL  112 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~-~~~~~~~~~~~~vi  112 (179)
                      .+||+ +|++|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|+ .+...+++++|+++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            47997 9999999   554444 56677889999999888888888 7655    9999999997 57889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|++++.+.....     ..|+++||||+|+.+.++++.+++.++|+...
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  140 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLPN-----EVPRILVGNKCDLREQIQVPTDLAQRFADAHS  140 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCCC-----CCCEEEEEECccchhhcCCCHHHHHHHHHHcC
Confidence            9999999999999999999998765321     16899999999999999999999999998653

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04112 Rab26 Rab26 subfamily

Probab=99.90  E-value=3.9e-23  Score=157.88  Aligned_cols=127  Identities=29%  Similarity=0.403  Sum_probs=109.4

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      +||+ +|+++||   ++.++. ..+. ..+.+|++.++..+.+.++ +..+    |||+|+++|..+...++++++++|+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~   79 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-GVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL   79 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-CEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence            5897 9999999   555554 4443 4688999988877778888 7655    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+..+.+.....      .|+++||||.|+..+|.++.++++.++++.+
T Consensus        80 v~D~~~~~s~~~~~~~~~~i~~~~~~~------~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~  137 (191)
T cd04112          80 LYDITNKASFDNIRAWLTEIKEYAQED------VVIMLLGNKADMSGERVVKREDGERLAKEYG  137 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEEcccchhccccCHHHHHHHHHHcC
Confidence            999999999999999999999876554      6899999999998888999999999987654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00099 rab6; Provisional

Probab=99.90  E-value=5.9e-23  Score=155.53  Aligned_cols=110  Identities=21%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy15036         61 YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM  136 (179)
Q Consensus        61 ~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~  136 (179)
                      +.|.+.|.||+|.++..+.+.++ +..+    |||+|+++|..++..||+++|++|+|||+++++||+++..|+..+.+.
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~-~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            45778899999999988888888 7776    999999999999999999999999999999999999999999999876


Q ss_pred             hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        137 DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       137 ~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ....      .|++|||||+||.+.|.|+.+++..++++..
T Consensus        82 ~~~~------~piilVgNK~DL~~~~~v~~~e~~~~~~~~~  116 (176)
T PTZ00099         82 RGKD------VIIALVGNKTDLGDLRKVTYEEGMQKAQEYN  116 (176)
T ss_pred             cCCC------CeEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence            5433      6889999999998888999999999987654

>PTZ00369 Ras-like protein; Provisional

Probab=99.90  E-value=6e-23  Score=156.59  Aligned_cols=128  Identities=14%  Similarity=0.159  Sum_probs=108.8

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++. ..+...+.||++..+ .+.+.++ +..+    |||+|+++|..++..|+++++++++
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            58998 9999999   555544 667788899998766 4677787 7665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+..+.+.....     ..|+++||||+|+.+++.++.+++.++++...
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~-----~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~  141 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKD-----RVPMILVGNKCDLDSERQVSTGEGQELAKSFG  141 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECcccccccccCHHHHHHHHHHhC
Confidence            999999999999999999998764331     16889999999998888999999999987653

>KOG4252|consensus

Probab=99.90  E-value=1.6e-24  Score=160.90  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=120.2

Q ss_pred             cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG  107 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~  107 (179)
                      .++++.-+|+| +|+.+||   ++++++ +.|...|..|||++|..+.+.+. ++.+    ||++||++|..+...|||+
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~-~Edvr~mlWdtagqeEfDaItkAyyrg   92 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL-IEDVRSMLWDTAGQEEFDAITKAYYRG   92 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh-HHHHHHHHHHhccchhHHHHHHHHhcc
Confidence            34778889998 9999999   666666 89999999999999998888887 6666    9999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |.+.+|||+-+++.||+.+..|.+.+......       +|.++|-||+||.+..++..+|+..+|+..
T Consensus        93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-------IPtV~vqNKIDlveds~~~~~evE~lak~l  154 (246)
T KOG4252|consen   93 AQASVLVFSTTDRYSFEATLEWYNKVQKETER-------IPTVFVQNKIDLVEDSQMDKGEVEGLAKKL  154 (246)
T ss_pred             ccceEEEEecccHHHHHHHHHHHHHHHHHhcc-------CCeEEeeccchhhHhhhcchHHHHHHHHHh
Confidence            99999999999999999999999999987766       688899999999999999999999998864

>cd04175 Rap1 Rap1 subgroup

Probab=99.90  E-value=5.6e-23  Score=152.59  Aligned_cols=126  Identities=16%  Similarity=0.192  Sum_probs=106.8

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. +.+.+.+.||++..+ .+.+.++ +..+    |||+|+++|..++..+++++|++++|
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-CEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            6897 9999999   544444 667788899998665 4667777 6655    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+..+.+... .+      .|+++||||+|+.+++.++.+++.+++++.+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  137 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTED------VPMILVGNKCDLEDERVVGKEQGQNLARQWG  137 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECCcchhccEEcHHHHHHHHHHhC
Confidence            999999999999999999986542 23      6899999999998888899999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04113 Rab4 Rab4 subfamily

Probab=99.89  E-value=1.1e-22  Score=150.46  Aligned_cols=127  Identities=27%  Similarity=0.423  Sum_probs=110.9

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+++||   +++++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+++.++++++++++|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v   79 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence            5897 9999999   565555 55677888999988888888887 7654    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||.++..|+.+++.....+      .|+++||||.|+.+++.++.+++..+++...
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~  136 (161)
T cd04113          80 YDITNRTSFEALPTWLSDARALASPN------IVVILVGNKSDLADQREVTFLEASRFAQENG  136 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEEchhcchhccCCHHHHHHHHHHcC
Confidence            99999999999999999998776554      6899999999998888999999999988754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.89  E-value=1.6e-22  Score=149.89  Aligned_cols=126  Identities=15%  Similarity=0.242  Sum_probs=106.8

Q ss_pred             eEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      +||+ +|++|||   ++.++..   .+.+++.+|+|.++..+.+.++.+..+    ||++|++++..+...+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            4887 9999999   5555542   477889999999988777777523444    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      +|||+++++||+++..|++.+.+....       +|+++||||+|+.++++++.++++.++...
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~  137 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKH-------MPGVLVGNKMDLADKAEVTDAQAQAFAQAN  137 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccccccCCCHHHHHHHHHHc
Confidence            999999999999999999999876533       688899999999888889998888887654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.89  E-value=8.4e-23  Score=162.39  Aligned_cols=130  Identities=15%  Similarity=0.071  Sum_probs=106.8

Q ss_pred             eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+.|||   ++.++ .+.+...|.||++ ++..+.+.++ +..+    |||+|++.|..++..+++++|++|+|
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~-~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV   78 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR-GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV   78 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC-CEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            5897 9999999   66555 4677888999997 6667788888 7665    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCC---ccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGA---LFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~---~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      ||+++++||+++..|++++.+....   ........|+||||||+|+..+|+++.+++.+++..
T Consensus        79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~  142 (247)
T cd04143          79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG  142 (247)
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh
Confidence            9999999999999999999765321   000001268899999999988889999999988754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=1.1e-22  Score=151.32  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=96.9

Q ss_pred             eEEE-EeCCCCc---eeEe-eeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKH-LKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~-~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.+ +...|.+.+.|+. ..+ .+.+.++ +..+    ||++|++.     ..|++++|++++|
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~-~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv   72 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVD-GQSHLLLIRDEGGAPD-----AQFASWVDAVIFV   72 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEEC-CEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence            4887 9999999   5544 4466666666654 345 4778888 7665    99999975     3578999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC--CCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ--RCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~--~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|++++.+.....     .+|++|||||+||.  .+|.|+.++++++|+++.
T Consensus        73 ~d~~~~~sf~~~~~~~~~i~~~~~~~-----~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~  132 (158)
T cd04103          73 FSLENEASFQTVYNLYHQLSSYRNIS-----EIPLILVGTQDAISESNPRVIDDARARQLCADMK  132 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhC
Confidence            99999999999999999998765321     16899999999995  478999999999998653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04140 ARHI_like ARHI subfamily

Probab=99.89  E-value=2e-22  Score=150.14  Aligned_cols=129  Identities=14%  Similarity=0.117  Sum_probs=105.0

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. +.+...+.||++..+ .+.+..+ +..+    |||+|+++|..++..++++++++++|
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCS-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEEC-CEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence            7897 9999999   555554 667778889988555 3555555 5443    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|++.+++......   +..|++|||||+|+.++|++..+++..++....
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  139 (165)
T cd04140          80 YSVTSKQSLEELKPIYELICEIKGNNI---EKIPIMLVGNKCDESHKREVSSNEGAACATEWN  139 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCC---CCCCEEEEEECccccccCeecHHHHHHHHHHhC
Confidence            999999999999999998887653210   126889999999998889999999998887653

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.89  E-value=1.6e-22  Score=151.80  Aligned_cols=125  Identities=19%  Similarity=0.185  Sum_probs=103.6

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +|++ +|++|||   ++.++. ..+..++.||.. +.+...+.++ +..+    ||++|+++|..+++.+++++|++|+|
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v   78 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVD-GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC   78 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEEC-CEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence            5887 9999999   554443 667788889875 4555667777 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++ ..|+..+++..+.       .|+++||||+||..            +|.|+.+++.++|++..
T Consensus        79 ~d~~~~~sf~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  147 (173)
T cd04130          79 FSVVNPSSFQNISEKWIPEIRKHNPK-------APIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG  147 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence            999999999999 4799998865433       68899999999953            68899999999998754

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.88  E-value=1.6e-22  Score=151.79  Aligned_cols=127  Identities=13%  Similarity=0.035  Sum_probs=106.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ..+||+ +|++|||   ++.++. ..+. ..|.||++.++..+.+.++ +..+    ||++|++++..++..||+++|++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-GQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-CeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            468998 9999999   555554 5676 8899999988877788888 7654    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+++..|+..+...  .+      .|+++||||+|+.+++++..+++.+++++.+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  139 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GE------IPCLFVAAKADLDEQQQRYEVQPDEFCRKLG  139 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CC------CeEEEEEEcccccccccccccCHHHHHHHcC
Confidence            9999999999999999999876432  12      6899999999998777777777788877654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.88  E-value=3.5e-22  Score=151.50  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+.|||   +++++. ..+.+.+.||++.++. +.+...++..+    |||+|+++|..+++.+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            4887 9999999   555554 6677888999987764 34555324444    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC----CCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC----REVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~----r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++. .|+..+....+.       .|+++||||+||..+    +.++.+++.+++....
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~  140 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPG-------TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG  140 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC
Confidence            9999999999995 699888765443       688999999999653    4688999999988764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03118 Rab family protein; Provisional

Probab=99.88  E-value=7.8e-22  Score=152.93  Aligned_cols=135  Identities=20%  Similarity=0.385  Sum_probs=110.6

Q ss_pred             cccCceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ...+...+||+ +|+.|||   ++..+.......+.||.+.++..+.+.++ +..+    |||+|+++|..++..+++++
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG-GKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34566789998 9999999   66565544446788999988877788887 6554    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHH-HHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEK-WLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~-w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+++.. |...+.......     ..|+++||||+|+..++.++.+++.+++.+..
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~  151 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ-----DCVKMLVGNKVDRESERDVSREEGMALAKEHG  151 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccCccCHHHHHHHHHHcC
Confidence            99999999999999999965 777776544321     15788999999998888999999999988654

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.88  E-value=6.3e-22  Score=148.01  Aligned_cols=123  Identities=20%  Similarity=0.291  Sum_probs=101.3

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+.|||   ++.++. ..+...+.||++.++....+..+ +..+    |||+|++++..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN-RGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence            5897 9999999   555544 66677899999988876666666 5554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ||+++++||+++..|++.+.+....       .|+++||||+|+.+ +.+.. ++.++++..
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~-------~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~  132 (166)
T cd00877          80 FDVTSRVTYKNVPNWHRDLVRVCGN-------IPIVLCGNKVDIKD-RKVKA-KQITFHRKK  132 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCC-------CcEEEEEEchhccc-ccCCH-HHHHHHHHc
Confidence            9999999999999999999887653       68899999999973 45543 455666543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04118 Rab24 Rab24 subfamily

Probab=99.88  E-value=6.5e-22  Score=150.85  Aligned_cols=125  Identities=18%  Similarity=0.294  Sum_probs=105.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      +||+ +|+++||   ++.++. ..+. ..+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|++++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil   79 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV   79 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence            4887 9999999   555555 4554 3688999988877888888 7766    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC----CCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR----CREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~----~r~Vs~~e~~~~a~~~  176 (179)
                      |||+++++||+++..|++.++...+.       .|+++||||+|+.+    .+.++.+++.+++.+.
T Consensus        80 v~d~~~~~s~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~  139 (193)
T cd04118          80 CYDLTDSSSFERAKFWVKELQNLEEH-------CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI  139 (193)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhcCCC-------CCEEEEEEcccccccccccCccCHHHHHHHHHHc
Confidence            99999999999999999999876443       68999999999853    3678888898888764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.88  E-value=3.7e-22  Score=149.40  Aligned_cols=123  Identities=19%  Similarity=0.176  Sum_probs=102.4

Q ss_pred             EEeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         47 QLGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        47 vlG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      |+|++|||   ++.++. ..+...+.||++..+ ...+.++ +..+    |||+|+++|..+++.+++++|++|+|||++
T Consensus         3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVD-GKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEEC-CEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            49999999   554444 667788889987555 4567777 7665    999999999999999999999999999999


Q ss_pred             ChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhCC
Q psy15036        119 NENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQSS  178 (179)
Q Consensus       119 ~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~~  178 (179)
                      +++||+++. .|+..+.+..+.       .|++|||||+|+..+            +.|+.+++.++|++++.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  146 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPN-------TPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA  146 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCC-------CCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence            999999995 699999876544       688999999999653            34999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.88  E-value=7.5e-22  Score=145.22  Aligned_cols=126  Identities=17%  Similarity=0.202  Sum_probs=105.0

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. ..+...+.||++..+ .+.+.++ +..+    ||++|+++|+.++..|+++++++++|
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEEC-CEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            6897 9999999   555555 567788889988655 5667777 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+..+.+.....     ..|+++||||+|+.+ +.+..+++.++++..+
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~-----~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~  136 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSD-----DVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYG  136 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccc-ceecHHHHHHHHHHhC
Confidence            99999999999999999998765321     168889999999976 6788889988887654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.87  E-value=8.1e-22  Score=146.05  Aligned_cols=127  Identities=18%  Similarity=0.201  Sum_probs=105.1

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. ..+...+.+|++..+ .+.+.++ +..+    |||+|+++|..++..+++.++++++|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v   78 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEID-GEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEEC-CEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence            5897 9999999   555555 556777888887443 4666677 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|...+.+.....     ..|+++||||+|+..++.++.+++.+++++.+
T Consensus        79 ~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~  136 (164)
T smart00173       79 YSITDRQSFEEIKKFREQILRVKDRD-----DVPIVLVGNKCDLESERVVSTEEGKELARQWG  136 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccceEcHHHHHHHHHHcC
Confidence            99999999999999999987654321     16888999999998888999999999987654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01861 Rab6 Rab6 subfamily

Probab=99.87  E-value=1.5e-21  Score=143.99  Aligned_cols=127  Identities=20%  Similarity=0.273  Sum_probs=109.2

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+++||   ++..+. ..+...+.++.+.++..+.+.++ +..+    ||++|++++..+...++++++++++|
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v   79 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            4887 9999999   555554 55666788999988888888888 7654    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+.+..|+..+......+      .|+++||||+|+.++++++.++...++++..
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~  136 (161)
T cd01861          80 YDITNRQSFDNTDKWIDDVRDERGND------VIIVLVGNKTDLSDKRQVSTEEGEKKAKELN  136 (161)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCC------CEEEEEEEChhccccCccCHHHHHHHHHHhC
Confidence            99999999999999999988765544      6899999999997778899999999887653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04124 RabL2 RabL2 subfamily

Probab=99.87  E-value=1e-21  Score=145.89  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=99.9

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++.++. ..+.+.+.+|.+.++..+.+.++ +..+    |||+|+++|..+++.|++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-GKTILVDFWDTAGQERFQTMHASYYHKAHACILV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence            5887 9999999   555444 66777788888888777777777 7665    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ||++++.||+++..|+..+++..+.       .|+++||||+|+..  .+ .+++..++++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~-------~p~ivv~nK~Dl~~--~~-~~~~~~~~~~~  131 (161)
T cd04124          80 FDVTRKITYKNLSKWYEELREYRPE-------IPCIVVANKIDLDP--SV-TQKKFNFAEKH  131 (161)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCC-------CcEEEEEECccCch--hH-HHHHHHHHHHc
Confidence            9999999999999999999876543       58899999999953  22 35566666543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.87  E-value=3e-21  Score=142.73  Aligned_cols=128  Identities=19%  Similarity=0.220  Sum_probs=105.5

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+++||   ++.++. ..+...+.+|++..+ .+.+.++ +..+    |||+|+++|..+...++++++++++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID-GQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC-CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            47997 9999999   544444 556777888887554 4566677 6544    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+..+.+.....     ..|+++||||+|+..++.++.+++.+++++.+
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~  138 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRD-----EFPMILVGNKADLEHQRKVSREEGQELARKLK  138 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCC-----CCCEEEEeeCccccccceecHHHHHHHHHHcC
Confidence            999999999999999999998764321     16889999999998888899999999987654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.87  E-value=3.3e-21  Score=142.32  Aligned_cols=126  Identities=25%  Similarity=0.476  Sum_probs=109.2

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++++|   +++++. ..+...+.+|++.++....+.++ +..+    ||++|+++|..+...+++++|++|+|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD-GKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence            5897 9999999   666665 44677788999988887788887 7544    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ||+++++||+.+..|+..+.......      +|+++|+||+|+...+++..+++++++++.
T Consensus        80 ~d~~~~~s~~~~~~~l~~~~~~~~~~------~pivvv~nK~D~~~~~~~~~~~~~~~~~~~  135 (164)
T smart00175       80 YDITNRESFENLKNWLKELREYADPN------VVIMLVGNKSDLEDQRQVSREEAEAFAEEH  135 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEEchhcccccCCCHHHHHHHHHHc
Confidence            99999999999999999998876444      799999999999887889999999998764

Rab GTPases are implicated in vesicle trafficking.

>cd04114 Rab30 Rab30 subfamily

Probab=99.87  E-value=5.5e-21  Score=142.23  Aligned_cols=130  Identities=26%  Similarity=0.432  Sum_probs=110.9

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ++.+.+||+ +|++|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++.|......+++.+|
T Consensus         3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d   81 (169)
T cd04114           3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSYYRSAN   81 (169)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            345789997 9999999   555555 55666788999988887888888 7664    999999999999899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      ++++|||+++++||+.+..|+.+++......      .|+++||||+|+.+++++..+.++.+++.
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~------~~~i~v~NK~D~~~~~~i~~~~~~~~~~~  141 (169)
T cd04114          82 ALILTYDITCEESFRCLPEWLREIEQYANNK------VITILVGNKIDLAERREVSQQRAEEFSDA  141 (169)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccccCHHHHHHHHHH
Confidence            9999999999999999999999998776554      68889999999988889998888887764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=99.86  E-value=2.3e-21  Score=149.34  Aligned_cols=125  Identities=18%  Similarity=0.157  Sum_probs=101.2

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh--------hhhhhhc
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS--------LTTGLYR  106 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~--------~~~~~~~  106 (179)
                      +||+ +|+++||   ++.++. ..+...+.||++.++..+.+.++ +..+    |||+|.++|..        ....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~   79 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS-GRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC-CEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence            5887 9999999   555544 66788899999877776777777 7655    99999765532        2345689


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHh---CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMD---GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~---~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      .+|++|+|||+++++||+.+..|++.+.+..   ..+      +|++|||||+|+..+|.++.+++.+++++
T Consensus        80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~------~piiivgNK~Dl~~~~~~~~~~~~~~~~~  145 (198)
T cd04142          80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKE------PPIVVVGNKRDQQRHRFAPRHVLSVLVRK  145 (198)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCC------CCEEEEEECccccccccccHHHHHHHHHH
Confidence            9999999999999999999999999998764   233      68999999999988888999998888754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.86  E-value=1.9e-21  Score=144.53  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=101.2

Q ss_pred             EEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhc-hhhhhhhhcCCcEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRF-LSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~-~~~~~~~~~~~~~vilv  114 (179)
                      ||+ +|++|||   ++.++ ...+...+.+|.+..+ .+.+.++ +..+    ||++|++++ ......+++.+|++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v   78 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTID-GEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV   78 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEEC-CEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence            576 9999999   44343 3556677888886544 4566777 7654    999999963 45677899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC--CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG--ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~--~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+..+.+...  .+      .|+++||||+|+.+++.++.+++.++++..+
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  137 (165)
T cd04146          79 YSITDRSSFDEISQLKQLIREIKKRDRE------IPVILVGNKADLLHYRQVSTEEGEKLASELG  137 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECCchHHhCccCHHHHHHHHHHcC
Confidence            999999999999999999987653  22      6889999999998889999999999998754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.86  E-value=8e-21  Score=140.42  Aligned_cols=128  Identities=20%  Similarity=0.345  Sum_probs=109.6

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++++|   ++.++. ..+...+.+|.+.++..+.+.++ +..+    ||++|++++..++..++++++++++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   79 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence            47997 9999999   555555 44556688999988877888888 7665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||.++++||+.+..|+..+.......      .|+++++||+|+...+.++.+++..++.+..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~  137 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNASPN------IIIALVGNKADLESKRQVSTEEAQEYADENG  137 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECccccccCcCCHHHHHHHHHHcC
Confidence            999999999999999999998776443      6888999999998888899999998887654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04148 RGK RGK subfamily

Probab=99.86  E-value=3.9e-21  Score=150.38  Aligned_cols=126  Identities=14%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             eEEE-EeCCCCc---eeEee-eccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc-CCcEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHL-KYLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR-GTMGFL  112 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~-~~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~-~~~~vi  112 (179)
                      +||+ +|++|||   ++..+ .+.+. ..+.+|.+.++..+.+.++ +..+    ||++|++.  .+...+++ ++|+++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~ii   77 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM--WTEDSCMQYQGDAFV   77 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch--HHHhHHhhcCCCEEE
Confidence            5897 9999999   55555 35554 6788888767777888887 6554    99999983  35566777 999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++..|+.++.+.....     ..|+|+||||+|+.+.++|+.++++++|....
T Consensus        78 lV~d~td~~S~~~~~~~~~~l~~~~~~~-----~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~  137 (221)
T cd04148          78 VVYSVTDRSSFERASELRIQLRRNRQLE-----DRPIILVGNKSDLARSREVSVQEGRACAVVFD  137 (221)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEChhccccceecHHHHHHHHHHcC
Confidence            9999999999999999999998764321     16899999999998889999999999987653

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=99.86  E-value=7.8e-21  Score=141.89  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=106.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|+|   ++..+. +.+...+.||++..+ .+.+.++ +..+    ||++|+++|..+++.+++.++++++|
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEID-GRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-CEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            6897 9999999   555544 556778889988554 5777777 6654    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||++++++|+.+..|.+.+.+.....     ..|++++|||.|+.+.+.++.+++.+++++..
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~-----~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~  137 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSD-----NVPMVLVGNKADLEDDRQVSREDGVSLSQQWG  137 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCC-----CCCEEEEEEChhccccCccCHHHHHHHHHHcC
Confidence            99999999999999999998754321     16888999999999889999999999887754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04123 Rab21 Rab21 subfamily

Probab=99.85  E-value=2e-20  Score=137.53  Aligned_cols=126  Identities=25%  Similarity=0.362  Sum_probs=105.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|.+|||   ++.++. ..+...+.+|.+.++..+.+.+. +..+    ||++|++.+..+++.++++++++++|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIYYRDADGAILV   79 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence            5887 9999999   555554 44556677787777766777776 6543    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ||++++++|+.+..|++++++....+      .|+++|+||+|+.+++.+..++..++++..
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~  135 (162)
T cd04123          80 YDITDADSFQKVKKWIKELKQMRGNN------ISLVIVGNKIDLERQRVVSKSEAEEYAKSV  135 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccCCCHHHHHHHHHHc
Confidence            99999999999999999998776544      689999999999988889998888887654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04135 Tc10 TC10 subfamily

Probab=99.85  E-value=1.1e-20  Score=141.45  Aligned_cols=125  Identities=22%  Similarity=0.217  Sum_probs=102.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+.|+|   ++..+. ..+.+.+.||++..+ ...+.++ +..+    ||++|+++|..++..++++++++++|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   78 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   78 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-CEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence            5897 9999999   554444 567777888887444 4567777 7664    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++. .|+..+++..+ +      .|+++||||+|+.+.            +.|+.+++..+|++.+
T Consensus        79 ~~~~~~~s~~~~~~~~~~~l~~~~~-~------~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (174)
T cd04135          79 FSVVNPASFQNVKEEWVPELKEYAP-N------VPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG  147 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCC-C------CCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            9999999999995 79998876633 3      688899999998543            4789999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.85  E-value=3.4e-21  Score=143.88  Aligned_cols=121  Identities=13%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      |+ +|+.|||   ++.++. ..+...+.||+|.++  ..+... +..+  ||++|+++|+.++..+++++|++|+|||.+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeC-CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            55 9999999   565555 557788899998654  233333 4444  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCH----HHHHHHHhhh
Q psy15036        119 NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVT----PDQIMFGSTQ  176 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~----~e~~~~a~~~  176 (179)
                      ++++|.+++.|+.++.+....       .|+++||||+|+...+.++.    .++..+|++.
T Consensus        79 ~~~s~~~~~~~l~~~~~~~~~-------~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~  133 (164)
T cd04162          79 DSERLPLARQELHQLLQHPPD-------LPLVVLANKQDLPAARSVQEIHKELELEPIARGR  133 (164)
T ss_pred             CHHHHHHHHHHHHHHHhCCCC-------CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCC
Confidence            999999999999988654432       68899999999988776553    3455565543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04149 Arf6 Arf6 subfamily

Probab=99.84  E-value=1.9e-20  Score=140.44  Aligned_cols=119  Identities=18%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||+ +|+++||   +++++. ..+ ..+.||+|.++.  .+... +..+  ||++|+++|+.+++.+|+++|++|+||
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~   84 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE--TVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   84 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceE--EEEEC-CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            58998 9999999   656655 334 457889987664  34445 5555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      |++++.||+++..|+.++.+.. ..+      +|++|||||+|+.+  .++.+|+.++.
T Consensus        85 D~t~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~i~~~~  135 (168)
T cd04149          85 DSADRDRIDEARQELHRIINDREMRD------ALLLVFANKQDLPD--AMKPHEIQEKL  135 (168)
T ss_pred             eCCchhhHHHHHHHHHHHhcCHhhcC------CcEEEEEECcCCcc--CCCHHHHHHHc
Confidence            9999999999988887776432 222      68999999999965  46778877764

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.84  E-value=4.1e-20  Score=138.36  Aligned_cols=125  Identities=14%  Similarity=0.113  Sum_probs=102.1

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      .||+ +|+.|||   ++.++. ..+.+.+.||++..+. +.+.++ +..+    |||+|+++|..++..++++++++++|
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEEC-CEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            5897 9999999   555554 6677888999986664 456777 6654    99999999999998999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++. .|+..+++....       .|+++||||+|+.+            ++.++.+++++++++..
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~  148 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFCPN-------VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG  148 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence            9999999999995 799988765443       58899999999854            24577889999987653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01862 Rab7 Rab7 subfamily

Probab=99.84  E-value=6.6e-20  Score=136.50  Aligned_cols=131  Identities=23%  Similarity=0.270  Sum_probs=107.1

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|+++||   +++++. ..+...+.+|++.++..+.+.+. +..+    ||++|++.|..++..++++++++|+|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVD-DKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   79 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence            5887 9999999   555544 55667778899988877778887 7655    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||++++++|+++..|.+.+........  ....|+++||||+|+..++.++.++.+.++++.+
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  140 (172)
T cd01862          80 YDVTNPKSFESLDSWRDEFLIQASPSD--PENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG  140 (172)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCccC--CCCceEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            999999999999999998876654210  0116889999999998777888899888887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=7.8e-20  Score=135.00  Aligned_cols=127  Identities=24%  Similarity=0.417  Sum_probs=105.5

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++++|   ++..+. ..+...+.||++.++....+.++ +..+    ||++|++++..+...+++++|++++|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   79 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV   79 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence            5887 9999999   555554 44556688999988877777777 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+.+..|+..+.+.....     .+|+++||||+|+. .+.+..+++.+++++..
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~  136 (161)
T cd01863          80 YDVTRRDTFTNLETWLNELETYSTNN-----DIVKMLVGNKIDKE-NREVTREEGLKFARKHN  136 (161)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhCCCC-----CCcEEEEEECCccc-ccccCHHHHHHHHHHcC
Confidence            99999999999999999998876432     16889999999997 46788889999887653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.83  E-value=7.3e-20  Score=135.92  Aligned_cols=107  Identities=15%  Similarity=0.176  Sum_probs=85.8

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      +||+ +|+++||   +++++. +.+. .+.||+|.++.  .+... +..+  ||++|+++|..++..||++++++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            4887 9999999   565654 5554 57899987653  44555 5555  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +++++||+++..|+..+.+.. ...      +|++|+|||+|+.+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~  115 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRD------AVLLVFANKQDLPN  115 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcC------CCEEEEEECCCCCC
Confidence            999999999988887775432 122      68899999999965

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.82  E-value=8.5e-20  Score=138.58  Aligned_cols=117  Identities=14%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||+ +|+++||   +++++. +.+. .+.||+|.++.  .+... +..+  ||++|+++++.++..||+++|++|+||
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~-~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~   92 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   92 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC-CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            57998 9999999   555554 4444 57899987653  45555 5555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIM  171 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~  171 (179)
                      |++++++|+++..|+..+.... ..+      +|++|||||.|+.+  .++.++..+
T Consensus        93 D~s~~~s~~~~~~~l~~~l~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~  141 (181)
T PLN00223         93 DSNDRDRVVEARDELHRMLNEDELRD------AVLLVFANKQDLPN--AMNAAEITD  141 (181)
T ss_pred             eCCcHHHHHHHHHHHHHHhcCHhhCC------CCEEEEEECCCCCC--CCCHHHHHH
Confidence            9999999999988887765322 122      68999999999975  344444433

>cd04129 Rho2 Rho2 subfamily

Probab=99.82  E-value=1.1e-19  Score=138.42  Aligned_cols=125  Identities=16%  Similarity=0.100  Sum_probs=103.3

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      .||+ +|+.|+|   +++.+. +.+.+.+.+|+...+. ..+.++ +..+    ||++|+++|....+.++++++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD-GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC-CEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            5887 9999999   555654 6677778888876554 456667 6554    99999999988888899999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC----------CCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR----------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~----------~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++. .|++.+++..+.       .|++|||||+|+.+          .|.++.+++..+|++.+
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYCPN-------VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG  146 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence            9999999999996 799999876543       68999999999954          57788899999998875

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.82  E-value=1.9e-19  Score=139.89  Aligned_cols=126  Identities=19%  Similarity=0.234  Sum_probs=103.4

Q ss_pred             CceeeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      ....+||+ +|++|||   ++ +.+.+.+...|.||++.++....+..+ +..+    ||++|+++|..++..|++.+++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-CGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            34578997 9999999   66 455577888999999999887777766 6665    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +++|||+++++||..+..|+..+.+....       .|+++||||+|+.+ +.++.++ .++++.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~  140 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVCEN-------IPIVLVGNKVDVKD-RQVKARQ-ITFHRK  140 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECccCcc-ccCCHHH-HHHHHH
Confidence            99999999999999999999999876533       67888999999964 4555443 345543

>cd04158 ARD1 ARD1 subfamily

Probab=99.82  E-value=8e-20  Score=136.81  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=95.4

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      ||+ +|+++||   ++.++.......+.||++.++.  .+..+ +..+  ||++|++++..++..++++++++++|||++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~~-~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s   77 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEYK-NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS   77 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEEC-CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence            576 9999999   5555553333358899987664  45555 5555  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      ++++|+++..|+..+.+... .+      +|++|||||+|+.+  .++.++++++++
T Consensus        78 ~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~~~~  126 (169)
T cd04158          78 HRDRVSEAHSELAKLLTEKELRD------ALLLIFANKQDVAG--ALSVEEMTELLS  126 (169)
T ss_pred             cHHHHHHHHHHHHHHhcChhhCC------CCEEEEEeCcCccc--CCCHHHHHHHhC
Confidence            99999999999999875432 22      68899999999964  588888887764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.82  E-value=1.1e-19  Score=137.00  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=87.5

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||+ +|++|||   ++.++. +.+ ..+.||++.++.  .+... +..+  ||++|+++++.++..||++++++|+||
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~t~~~~~~--~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~   88 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVE--TVTYK-NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV   88 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCC-CCcCCccccceE--EEEEC-CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence            58998 9999999   555554 444 357899987764  34455 5555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |+++++||+++..|+..+.+.. ..+      +|++|||||+||.+
T Consensus        89 D~t~~~s~~~~~~~l~~~~~~~~~~~------~piilv~NK~Dl~~  128 (175)
T smart00177       89 DSNDRDRIDEAREELHRMLNEDELRD------AVILVFANKQDLPD  128 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHhhCHhhcC------CcEEEEEeCcCccc
Confidence            9999999999999888876432 222      68999999999975

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.82  E-value=2.5e-20  Score=139.45  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=91.6

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      +|+ +|++|||   +++++...+...+.||+|..  .+.+..+ +..+  ||++|+++++.++..||++++++|+|||.+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~--~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s   77 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT--PTKLRLD-KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS   77 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccce--EEEEEEC-CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence            366 9999999   77777766788899999865  3456666 6555  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036        119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ++++|+++..|+..+.+... .+      .|++||+||+|+.+.+
T Consensus        78 ~~~s~~~~~~~l~~l~~~~~~~~------~piliv~NK~Dl~~~~  116 (167)
T cd04161          78 DDDRVQEVKEILRELLQHPRVSG------KPILVLANKQDKKNAL  116 (167)
T ss_pred             chhHHHHHHHHHHHHHcCccccC------CcEEEEEeCCCCcCCC
Confidence            99999999999999876532 22      6899999999998755

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00154 Rab Rab family

Probab=99.80  E-value=7.3e-19  Score=128.03  Aligned_cols=126  Identities=26%  Similarity=0.427  Sum_probs=106.8

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|.+++|   ++..+. ..+...+.+|.+.++....+.++ +..+    ||++|++.+..+...++++++++++|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v   79 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV   79 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence            4787 9999999   565555 44566678899988887777776 5443    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ||.+++++++.+..|+..+.......      .|+++|+||+|+...+.+..++.++++.++
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  135 (159)
T cd00154          80 YDITNRESFENLDKWLKELKEYAPEN------IPIILVGNKIDLEDQRQVSTEEAQQFAKEN  135 (159)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEEcccccccccccHHHHHHHHHHc
Confidence            99999999999999999998877443      688999999999766788899999998764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04154 Arl2 Arl2 subfamily

Probab=99.80  E-value=6.9e-19  Score=132.04  Aligned_cols=121  Identities=13%  Similarity=0.106  Sum_probs=95.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|++|||   ++..+...+...+.||+|..  .+.+.++ +..+  ||++|+++++.++..++++++++++||
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~--~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~   89 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ--IKTLEYE-GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV   89 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc--eEEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence            358897 9999999   66666655556778898843  3556666 6655  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      |.++++||+++..|+..+.+.. ..+      +|+++||||+|+.+.  ...+++.++.
T Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~------~p~iiv~nK~Dl~~~--~~~~~~~~~~  140 (173)
T cd04154          90 DSSDRLRLDDCKRELKELLQEERLAG------ATLLILANKQDLPGA--LSEEEIREAL  140 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHhChhhcC------CCEEEEEECcccccC--CCHHHHHHHh
Confidence            9999999999999988876432 122      688999999999763  3566666654

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.80  E-value=5.7e-19  Score=134.12  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=88.6

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||+ +|+++||   ++.++. +.+. .+.||++.++.  .+... +..+  ||++|+++++.++..||+++|++|+||
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~~~~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~   92 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVE--TVEYK-NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV   92 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCccccceE--EEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58998 9999999   555553 4454 47789987654  45555 5555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      |+++++||+++..|+..+.+.. ..+      +|++|||||.|+.+  .++.++
T Consensus        93 D~t~~~s~~~~~~~l~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~  138 (182)
T PTZ00133         93 DSNDRERIGDAREELERMLSEDELRD------AVLLVFANKQDLPN--AMSTTE  138 (182)
T ss_pred             eCCCHHHHHHHHHHHHHHHhCHhhcC------CCEEEEEeCCCCCC--CCCHHH
Confidence            9999999999988877765321 122      68899999999965  344444

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.80  E-value=1e-18  Score=128.84  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=104.1

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|||   ++..+. ..+...+.+|++..+ .+...++ +..+    ||++|++++..++..++++++++++|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   78 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-GEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC-CEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence            5897 9999999   555554 556778888887555 3556666 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+++..|+..+.+... .+      .|+++|+||+|+..++.+..++.++++++.+
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~  136 (164)
T cd04139          79 FSITDMESFTATAEFREQILRVKDDDN------VPLLLVGNKCDLEDKRQVSSEEAANLARQWG  136 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEEccccccccccCHHHHHHHHHHhC
Confidence            999999999999999999987643 22      6888999999998777888888888887653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.79  E-value=1.6e-18  Score=131.62  Aligned_cols=123  Identities=15%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   +++++. ..+. .+.||+|.++....+.+.++..  +  |||+|+++|..++..++++++++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            57898 9999999   655555 3343 3468888777655555431233  3  9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      |||.+++++|+.+..|+.++.+.....     ..|+++|+||+|+.+  .++.++...++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~-----~~p~iiv~NK~D~~~--~~~~~~~~~~~  134 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQ-----GVPVLVLANKQDLPN--ALSVSEVEKLL  134 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcC-----CCcEEEEEECcCccc--cCCHHHHHHHh
Confidence            999999999999999999887654321     158899999999964  45556655554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00876 Ras Ras family

Probab=99.79  E-value=1.6e-18  Score=127.18  Aligned_cols=125  Identities=16%  Similarity=0.189  Sum_probs=104.4

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|++|+|   ++..+. ..+...+.+|.+ +...+.+.++ +..+    ||++|++.+..+...+++.++++++||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   78 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVD-GETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY   78 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence            676 9999999   555554 447778888887 4445666666 5444    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+++++|++++..|...+.+... ..      +|+++|+||+|+...+.++.+++..++++..
T Consensus        79 d~~~~~s~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  135 (160)
T cd00876          79 SITDRESFEEIKGYREQILRVKDDED------IPIVLVGNKCDLENERQVSKEEGKALAKEWG  135 (160)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCC------CcEEEEEECCcccccceecHHHHHHHHHHcC
Confidence            99999999999999999987765 22      7899999999998878899999999988754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.78  E-value=1.8e-18  Score=132.89  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=98.5

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|+.|||   ++.++. ..+...+.+|++ ++..+.+.+. +..+    ||++|+++|..++..+++++|++|+||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~   78 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVG-GVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY   78 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEEC-CEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence            676 9999999   554444 556777888876 4555677777 7544    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-CCCCCHHHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-CREVVTPDQIMFG  173 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-~r~Vs~~e~~~~a  173 (179)
                      |++++++|+.+..|+..+.+.....     ..|++||+||.|+.. ++.+..+++.+.+
T Consensus        79 d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~NK~Dl~~~~~~v~~~~~~~~~  132 (198)
T cd04147          79 AVDDPESFEEVERLREEILEVKEDK-----FVPIVVVGNKADSLEEERQVPAKDALSTV  132 (198)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEEccccccccccccHHHHHHHH
Confidence            9999999999999999998765431     168899999999965 5778877766554

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.77  E-value=3e-18  Score=127.77  Aligned_cols=111  Identities=14%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      .||+ +|+.|||   ++.++. +.+.+.+.++.+ ++ .....+. +..+    |||+|++++......+++.++++++|
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv   77 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVT-PERVPTTIVDTSSRPQDRANLAAEIRKANVICLV   77 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-Eeeeeec-CCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence            3887 9999999   555554 555555444432 22 2333444 4444    99999999988888889999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036        115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      ||+++++||+.+. .|++.+++....       .|+++||||+|+.+.+..
T Consensus        78 ~d~~~~~s~~~~~~~~~~~i~~~~~~-------~pviiv~nK~Dl~~~~~~  121 (166)
T cd01893          78 YSVDRPSTLERIRTKWLPLIRRLGVK-------VPIILVGNKSDLRDGSSQ  121 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEchhcccccch
Confidence            9999999999985 799988876543       689999999999776553

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.77  E-value=3.2e-18  Score=127.29  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=99.1

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +||+ +|++|+|   +++.+. ..+...+.+|+...+ ...+..+ +..+    ||++|++++..+...+++.+|++++|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v   78 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVD-GKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC   78 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-CEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence            5887 9999999   555555 445567778876444 3455666 6554    99999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC-----------CCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR-----------EVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r-----------~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||..+ ..|+..+......       .|+++||||+|+.+.+           .+..+++.+++...+
T Consensus        79 ~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  146 (171)
T cd00157          79 FSVDSPSSFENVKTKWIPEIRHYCPN-------VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG  146 (171)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence            999999999988 5799888876654       6889999999996644           457888888887654

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.77  E-value=6.3e-18  Score=131.01  Aligned_cols=113  Identities=24%  Similarity=0.282  Sum_probs=94.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++. ..+...+.+|++..+........ +..+    |||+||++|+.+++.|+++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-CCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            38998 9999999   555554 77888899999988876666554 4344    9999999999999999999999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        114 IFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       114 vyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      |||.++ +.+++....|.+++....+..      .|+++||||+||...+
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~------~~iilv~nK~Dl~~~~  127 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDD------VPILLVGNKIDLFDEQ  127 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCC------ceEEEEecccccccch
Confidence            999999 555666689999999888644      5899999999998764

>cd04157 Arl6 Arl6 subfamily

Probab=99.76  E-value=5.6e-18  Score=124.90  Aligned_cols=108  Identities=14%  Similarity=0.125  Sum_probs=86.0

Q ss_pred             EEE-EeCCCCc---eeEeeecc--CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYL--GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~--~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      +|+ +|+++||   ++.++...  +...+.||+|....  .+..+ +..+  ||++|+++|..++..++++++++|+|||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKG-NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEEC-CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            466 9999999   66666643  45678899986543  34444 5455  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHh---CCccCccccceEEEEeeCCCcCCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMD---GALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~---~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      .+++.+|..+..|+..+.+..   ..+      .|+++|+||+|+.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~iiv~NK~Dl~~~  119 (162)
T cd04157          78 SSDRLRLVVVKDELELLLNHPDIKHRR------VPILFFANKMDLPDA  119 (162)
T ss_pred             CCcHHHHHHHHHHHHHHHcCcccccCC------CCEEEEEeCccccCC
Confidence            999999999999999886532   122      688999999999753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.76  E-value=7.4e-18  Score=126.89  Aligned_cols=125  Identities=21%  Similarity=0.220  Sum_probs=101.7

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      .||+ +|++|||   ++.++. ..+...+.||.+..+ .+.+.++ +..+    ||++|+++|..+...++..++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYK-GQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV   79 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEEC-CEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence            5887 9999999   555554 445667788887655 3556666 5553    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ||+++.++|+.+..|+..+.+... .+      .|+++|+||+|+...+.+..++...++.+.
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~  136 (180)
T cd04137          80 YSVTSRKSFEVVKVIYDKILDMLGKES------VPIVLVGNKSDLHTQRQVSTEEGKELAESW  136 (180)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEEchhhhhcCccCHHHHHHHHHHc
Confidence            999999999999999888876543 22      578899999999887888888888887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0096|consensus

Probab=99.75  E-value=4.3e-18  Score=127.52  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             ccccccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhh
Q psy15036         34 MTAAKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGL  104 (179)
Q Consensus        34 m~~~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~  104 (179)
                      |+.+...-..+|++ +|+.|.|    ..+.+++.|...|.+|+|++... .+...+...+    |||+|||++..++..|
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~p-l~f~tn~g~irf~~wdtagqEk~gglrdgy   79 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHP-LLFDTNRGQIRFNVWDTAGQEKKGGLRDGY   79 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEee-eeeecccCcEEEEeeecccceeeccccccc
Confidence            33333334689998 9999999    56777899999999999998763 3333313334    9999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |-++.|.|++||++.+-++.++.+|..++.+.+.+       .||+++|||.|...
T Consensus        80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-------iPiv~cGNKvDi~~  128 (216)
T KOG0096|consen   80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-------IPIVLCGNKVDIKA  128 (216)
T ss_pred             EEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-------CCeeeeccceeccc
Confidence            99999999999999999999999999999988876       69999999999865

>KOG4423|consensus

Probab=99.73  E-value=3.4e-20  Score=138.49  Aligned_cols=151  Identities=16%  Similarity=0.191  Sum_probs=116.0

Q ss_pred             EeccccccccccccccccccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-----e
Q psy15036         20 IFGKPTYRCTKVTKMTAAKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-----F   89 (179)
Q Consensus        20 ~~~~~~~~~~~~~~m~~~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-----w   89 (179)
                      +||.+..+.+....+..   -.+++|++ +|+.|||    +.+++...|...|..|||++|.-+.++.+ +..+     |
T Consensus         5 ~fG~~~~~~a~a~ap~k---r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wd-d~t~vRlqLw   80 (229)
T KOG4423|consen    5 VFGSGISRIARASAPKK---REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWD-DKTIVRLQLW   80 (229)
T ss_pred             ccCcchhhhhhcCCCch---hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-hHHHHHHHHh
Confidence            57777777765554433   45799997 9999999    34445588899999999999987877777 6665     9


Q ss_pred             eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC-HHH
Q psy15036         90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV-TPD  168 (179)
Q Consensus        90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs-~~e  168 (179)
                      |.+||++|..+.+.||+.+++..+|||+++.-+|+.+..|.+++..-...  ++....|+++.+||||.+..-..+ ...
T Consensus        81 dIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qL--png~Pv~~vllankCd~e~~a~~~~~~~  158 (229)
T KOG4423|consen   81 DIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQL--PNGTPVPCVLLANKCDQEKSAKNEATRQ  158 (229)
T ss_pred             cchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccC--CCCCcchheeccchhccChHhhhhhHHH
Confidence            99999999999999999999999999999999999999999998643322  112225678889999987522222 244


Q ss_pred             HHHHHhhh
Q psy15036        169 QIMFGSTQ  176 (179)
Q Consensus       169 ~~~~a~~~  176 (179)
                      ...|.+++
T Consensus       159 ~d~f~ken  166 (229)
T KOG4423|consen  159 FDNFKKEN  166 (229)
T ss_pred             HHHHHhcc
Confidence            55555544

>cd00879 Sar1 Sar1 subfamily

Probab=99.73  E-value=3.9e-17  Score=124.06  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=97.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|++|+|   ++..+.......+.||++...  ..+.++ +..+  ||++|++++..++..++++++++++||
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~-~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~   94 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIG-NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV   94 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEEC-CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            468887 9999999   666665433356778887543  456677 7666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      |++++++|+....|+.++.+... .+      .|+++++||+|+.+  .++.++.+++.+
T Consensus        95 D~~~~~s~~~~~~~~~~i~~~~~~~~------~pvivv~NK~Dl~~--~~~~~~~~~~~~  146 (190)
T cd00879          95 DAADPERFQESKEELDSLLSDEELAN------VPFLILGNKIDLPG--AVSEEELRQALG  146 (190)
T ss_pred             ECCcHHHHHHHHHHHHHHHcCccccC------CCEEEEEeCCCCCC--CcCHHHHHHHhC
Confidence            99999999999989888875432 22      58889999999964  788888887764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.73  E-value=5.5e-17  Score=122.01  Aligned_cols=114  Identities=12%  Similarity=0.176  Sum_probs=88.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||+ +|++++|   ++.++. +.+. .+.||++.++.  .+.++ +..+  ||++|++++...+..+++++|++++||
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIGSNVE--EIVYK-NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEEC-CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            47897 9999999   555554 4444 46788886653  45556 6555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      |.+++++|..+..|+..+.+... .+      .|+++++||+|+.+  .++.++
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~~~~~~------~p~viv~NK~Dl~~--~~~~~~  136 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAHEDLRK------AVLLVLANKQDLKG--AMTPAE  136 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcC------CCEEEEEECCCCCC--CCCHHH
Confidence            99999999999888887765432 22      68889999999965  344444

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.72  E-value=5.6e-17  Score=123.22  Aligned_cols=120  Identities=13%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|.+|||   ++.++.......+.||.+...  ..+.++ +..+  ||++|+++++.++..|+++++++++|+
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv   92 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIG-NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV   92 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence            458897 9999999   666665433345677776543  345566 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      |.+++++|.....|+.++.+... .+      .|+++|+||+|+..  .++.++.++.
T Consensus        93 D~~~~~~~~~~~~~l~~l~~~~~~~~------~piliv~NK~Dl~~--~~~~~~i~~~  142 (184)
T smart00178       93 DAYDKERFAESKRELDALLSDEELAT------VPFLILGNKIDAPY--AASEDELRYA  142 (184)
T ss_pred             ECCcHHHHHHHHHHHHHHHcChhhcC------CCEEEEEeCccccC--CCCHHHHHHH
Confidence            99999999999988888765321 22      68899999999964  6777776644

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.71  E-value=8.2e-17  Score=118.65  Aligned_cols=108  Identities=18%  Similarity=0.091  Sum_probs=83.2

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      ||+ +|++|||   ++.++.......+.||++.++  +.+..+.+..+  ||++|++++..++..++++++++|+|||.+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~   78 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS   78 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence            576 9999999   656655332234578888654  34444412334  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036        119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++.+|..+..|+.++.+... .+      .|+++|+||+|+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~  115 (160)
T cd04156          79 DEARLDESQKELKHILKNEHIKG------VPVVLLANKQDLPG  115 (160)
T ss_pred             cHHHHHHHHHHHHHHHhchhhcC------CCEEEEEECccccc
Confidence            99999999999988865432 22      68999999999964

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.71  E-value=9.6e-17  Score=118.16  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=88.1

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      ||+ +|.+|||   ++..+.+.....+.+|++....  .+.+. +..+  ||++|++++..++..++++++++++|||++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~   77 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK-NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS   77 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC-CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence            676 9999999   6666665445677888886553  45566 5555  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036        119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ++++|..+..|+..+.+... ..      .|+++|+||+|+...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~------~piiiv~nK~D~~~~~  116 (158)
T cd00878          78 DRERIEEAKEELHKLLNEEELKG------VPLLIFANKQDLPGAL  116 (158)
T ss_pred             CHHHHHHHHHHHHHHHhCcccCC------CcEEEEeeccCCcccc
Confidence            99999999999888876432 22      6889999999997643

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.71  E-value=1.5e-16  Score=117.46  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      ||+ +|+++||   ++..+.......+.||++.++.  .+... +..+  ||++|+++|..+++.++++++++++|||.+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~   77 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTYK-NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST   77 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEEC-CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence            576 9999999   5555543222346788886653  44455 5555  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCC
Q psy15036        119 NENSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++.++.....|+..+.+. ...+      .|+++|+||+|+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~------~piiiv~nK~Dl~~  114 (158)
T cd04151          78 DRDRLGTAKEELHAMLEEEELKG------AVLLVFANKQDMPG  114 (158)
T ss_pred             CHHHHHHHHHHHHHHHhchhhcC------CcEEEEEeCCCCCC
Confidence            999999887766655432 2222      68899999999965

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.70  E-value=1e-16  Score=118.89  Aligned_cols=119  Identities=15%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             EEE-EeCCCCc---eeEeeec-------cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKY-------LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~-------~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      +|+ +|+.|||   ++..+..       .....+.||++.++.  .+.++ +..+  ||++|++.+..+...++++++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG-NARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC-CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            466 9999999   5444432       224466788887764  45666 6666  99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      ++|||.+++++++.+..|+..+.+... .+      .|+++|+||+|+..  .++.++..++.+
T Consensus        78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~NK~D~~~--~~~~~~~~~~~~  133 (167)
T cd04160          78 IYVIDSTDRERFEESKSALEKVLRNEALEG------VPLLILANKQDLPD--ALSVEEIKEVFQ  133 (167)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhChhhcC------CCEEEEEEcccccc--CCCHHHHHHHhc
Confidence            999999999999999999888875432 22      68899999999865  455666665543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.70  E-value=6.4e-17  Score=113.93  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=73.2

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCC---cccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTG---THGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~---~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ||+ +|+.|||   +++.+......   .+.++.+.++........ ...  +  ||++|++.+...+..++..+|++++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il   79 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-GDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL   79 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-TEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-CCceEEEEEecCccceecccccchhhcCcEEEE
Confidence            786 9999999   77766633222   223333333433334443 332  3  9999999999888888999999999


Q ss_pred             EEeCCChhhHHHHHHH---HHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036        114 IFDVTNENSFKDVEKW---LLQIKVMDGALFTHFELQIVFMRGCLEL  157 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w---~~~i~~~~~~~~~~~~~~~iilvGnK~D  157 (179)
                      |||+++++||+.+..|   +..++.....       .|++|||||.|
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~-------~piilv~nK~D  119 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKNIRKRDKN-------IPIILVGNKSD  119 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHHHHHHSSC-------SEEEEEEE-TC
T ss_pred             EEcCCChHHHHHHHHHHHHHHHHHccCCC-------CCEEEEEeccC
Confidence            9999999999998655   5555443333       69999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG1673|consensus

Probab=99.68  E-value=1.7e-16  Score=115.70  Aligned_cols=110  Identities=17%  Similarity=0.295  Sum_probs=96.5

Q ss_pred             eeeEE-EEeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGT-QLGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Ki-vlG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+|| ++||+.+|   ++..++ +.+.+++..|.|+.|..|.+.+. +..+    ||..|++++..+.+.-++++-+++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            57899 59999999   444444 55678899999999999999999 8887    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      ++||++++++++.+..|+.+.+......       ..||||+|.|+-
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktA-------iPilvGTKyD~f  137 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTA-------IPILVGTKYDLF  137 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCcc-------ceEEeccchHhh
Confidence            9999999999999999999999877663       556889999973

>KOG0070|consensus

Probab=99.68  E-value=1.6e-15  Score=113.40  Aligned_cols=120  Identities=13%  Similarity=0.171  Sum_probs=96.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ...+|| +|-.+.|   +++++.....-...||+|  |....+.+. +.++  ||.+||++++.+++.||++++++|+|.
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiG--fnVE~v~yk-n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv   92 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIG--FNVETVEYK-NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV   92 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccCCCccc--cceeEEEEc-ceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence            368898 9999999   777877443344499999  445678888 8887  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIM  171 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~  171 (179)
                      |.++++-+...+.-+..+......     ...|+++.+||.|+.+  ..+..|..+
T Consensus        93 DS~Dr~Ri~eak~eL~~~l~~~~l-----~~~~llv~aNKqD~~~--als~~ei~~  141 (181)
T KOG0070|consen   93 DSSDRERIEEAKEELHRMLAEPEL-----RNAPLLVFANKQDLPG--ALSAAEITN  141 (181)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCccc-----CCceEEEEechhhccc--cCCHHHHHh
Confidence            999999999998777777655442     1268888899999986  566555443

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.66  E-value=9.4e-16  Score=115.81  Aligned_cols=122  Identities=14%  Similarity=0.171  Sum_probs=98.2

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ...+||+ +|..++|   +++++.......+.||+|.+.  ..+.+. +..+  ||.+|+++++.+++.||++++++|+|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~-~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV   88 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYK-GYSLTIWDLGGQESFRPLWKSYFQNADGIIFV   88 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEET-TEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeC-cEEEEEEeccccccccccceeeccccceeEEE
Confidence            4579998 9999999   666666544456889998654  567777 7777  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      .|.++++.+.+....+..+.......     ..|+++++||.|+.+  .++.++....
T Consensus        89 vDssd~~~l~e~~~~L~~ll~~~~~~-----~~piLIl~NK~D~~~--~~~~~~i~~~  139 (175)
T PF00025_consen   89 VDSSDPERLQEAKEELKELLNDPELK-----DIPILILANKQDLPD--AMSEEEIKEY  139 (175)
T ss_dssp             EETTGGGGHHHHHHHHHHHHTSGGGT-----TSEEEEEEESTTSTT--SSTHHHHHHH
T ss_pred             Eecccceeecccccchhhhcchhhcc-----cceEEEEeccccccC--cchhhHHHhh
Confidence            99999999999988888876542211     168888899999875  6777776654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073|consensus

Probab=99.66  E-value=1.4e-15  Score=111.63  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +..++|+ +|..+.|   +..++.+...+...||.|  |..+++.++ +..+  ||.+||..+++.+++||..+||+|.|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g--f~Iktl~~~-~~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG--FQIKTLEYK-GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccccCCccc--eeeEEEEec-ceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            3489998 9999999   777888888889999999  556788888 8887  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQI  170 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~  170 (179)
                      +|.+++..|+....-+..+.... -..      .|+++++||.|+..  +++.++..
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG------~~~Lvlank~dl~~--~l~~~~i~  139 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAG------APLLVLANKQDLPG--ALSLEEIS  139 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcC------CceEEEEecCcCcc--ccCHHHHH
Confidence            99999999999977766664321 111      36778899999985  56655543

>KOG3883|consensus

Probab=99.65  E-value=9e-16  Score=111.64  Aligned_cols=128  Identities=15%  Similarity=0.102  Sum_probs=99.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-c--cCCCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhc-hhhhhhhhcCCcE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-Y--LGTGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRF-LSLTTGLYRGTMG  110 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~--~~~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~-~~~~~~~~~~~~~  110 (179)
                      -.||| +|-.+||   ++..+. +  ....++.||++ +.+...+..+.|-+  +  +||+|-..+ ..+-+.|+.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            47898 9999999   555544 2  23567889998 45555554441211  2  999998777 6788999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ++||||..|++||+.+....++|.+....+     ..||+++|||+|+.+.|+|..+-|..||++.
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKK-----EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE  148 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKK-----EVPIVVLANKRDRAEPREVDMDVAQIWAKRE  148 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccc-----cccEEEEechhhcccchhcCHHHHHHHHhhh
Confidence            999999999999999887777777655443     2688888999999999999999999999763

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.62  E-value=2.6e-15  Score=109.37  Aligned_cols=108  Identities=15%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      |+ +|.+|+|   +++.+. ..+..++.||++.++.  .+..+ +..+  ||++|++++..++..+++.++++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG-NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC-CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            55 9999999   666665 4577888899987764  34455 5444  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036        119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ++++|..+..|+..+.+... ..      .|+++|+||+|+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~------~p~iiv~nK~D~~~~~  117 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEG------IPLLVLGNKNDLPGAL  117 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcC------CCEEEEEeCccccCCc
Confidence            99999999888887765321 22      5888999999987643

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0071|consensus

Probab=99.60  E-value=1.4e-14  Score=104.02  Aligned_cols=120  Identities=19%  Similarity=0.217  Sum_probs=99.0

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      .++|+ +|-.+.|   ++.+++...+....||+|  |..+.+++. +..+  ||.+||++.+.+++.||.++.++|+|.|
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvG--FnvetVtyk-N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D   93 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   93 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCCcccccccc--eeEEEEEee-eeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence            57898 9999999   788888777788889999  556788888 8887  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      ..+++..++.+.-+..+.....-.     ..++++.+||-|+.+  ..+..|++++
T Consensus        94 sa~~dr~eeAr~ELh~ii~~~em~-----~~~~LvlANkQDlp~--A~~pqei~d~  142 (180)
T KOG0071|consen   94 SADRDRIEEARNELHRIINDREMR-----DAIILILANKQDLPD--AMKPQEIQDK  142 (180)
T ss_pred             ccchhhHHHHHHHHHHHhCCHhhh-----cceEEEEecCccccc--ccCHHHHHHH
Confidence            999988888876666665433221     157777799999987  6777777665

>cd04155 Arl3 Arl3 subfamily

Probab=99.59  E-value=1.9e-14  Score=107.38  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      .+||+ +|.+|+|   ++..+.+.....+.||.|.++  ..+..+ +..+  ||++|+.++......++++++++++|||
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D   90 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSD-GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID   90 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEEC-CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence            68897 9999999   666666544455778888544  456666 7666  9999999998888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +++..+|.....|+..+.+.. ...      .|+++++||+|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~  129 (173)
T cd04155          91 SADKKRLEEAGAELVELLEEEKLAG------VPVLVFANKQDLAT  129 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhcC------CCEEEEEECCCCcc
Confidence            999999999988887775432 222      68889999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.58  E-value=4.5e-15  Score=107.57  Aligned_cols=108  Identities=14%  Similarity=-0.021  Sum_probs=76.6

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc-----hhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV-----SRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~-----e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|+++||   ++.++.+.. ..+.+|++.++.        + .+|||+|+     +.|+.+.+ .++++|++++||
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~-~~~~~t~~~~~~--------~-~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~   70 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE-ILYKKTQAVEYN--------D-GAIDTPGEYVENRRLYSALIV-TAADADVIALVQ   70 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc-cccccceeEEEc--------C-eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEe
Confidence            787 9999999   666665432 235667665442        2 34899998     34555544 589999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+++++||.. ..|.+..     .       .|+++|+||+||.+ +.+..+++++++++.+
T Consensus        71 d~~~~~s~~~-~~~~~~~-----~-------~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~  118 (142)
T TIGR02528        71 SATDPESRFP-PGFASIF-----V-------KPVIGLVTKIDLAE-ADVDIERAKELLETAG  118 (142)
T ss_pred             cCCCCCcCCC-hhHHHhc-----c-------CCeEEEEEeeccCC-cccCHHHHHHHHHHcC
Confidence            9999999876 3454321     1       26778899999965 5667788888887643

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01890 LepA LepA subfamily

Probab=99.56  E-value=3.1e-14  Score=106.80  Aligned_cols=118  Identities=14%  Similarity=0.068  Sum_probs=79.3

Q ss_pred             EEE-EeCCCCc---eeEeeec--------cCCCcccCcc------eeeeeEEEEEe-----cCCCee----eeCCCchhc
Q psy15036         45 GTQ-LGRRGIP---LLKHLKY--------LGTGTHGKTV------GIVFPAISVTY-----SIGPRY----FRFPLVSRF   97 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~--------~~~~~~~~Ti------~~~~~~k~v~~-----~~~~~i----wDt~G~e~~   97 (179)
                      .|. +|+.+||   ++.++..        .+...+.+|.      |.++..+.+.+     + +..+    |||+|+++|
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKD-GQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCC-CCcEEEEEEECCCChhh
Confidence            355 9999999   5554442        1223344433      44554443333     3 3443    999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      ......+++++|++|+|||.++..+++.+..|.....    .+      .|+++|+||+|+.+.+  ..+...++++.
T Consensus        81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~------~~iiiv~NK~Dl~~~~--~~~~~~~~~~~  146 (179)
T cd01890          81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NN------LEIIPVINKIDLPSAD--PERVKQQIEDV  146 (179)
T ss_pred             HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cC------CCEEEEEECCCCCcCC--HHHHHHHHHHH
Confidence            9999999999999999999999888888777754321    22      4788999999996532  22333455544

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.53  E-value=1.2e-13  Score=99.87  Aligned_cols=122  Identities=13%  Similarity=0.122  Sum_probs=94.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC--ee--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP--RY--FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~--~i--wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|..|+|   ++..+. ..+...+.++++.++....+.++ +.  .+  ||++|++++..+...+++.+++++.
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   79 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR   79 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence            37897 9999999   555444 33566777888888776667777 63  34  9999999999999999999999999


Q ss_pred             EEeCCCh-hhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        114 IFDVTNE-NSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       114 vyDit~~-~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      ++|+... .++.... .|...+.+.....      .|+++++||+|+...+ +..+....+
T Consensus        80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~~~-~~~~~~~~~  133 (161)
T TIGR00231        80 VFDIVILVLDVEEILEKQTKEIIHHAESN------VPIILVGNKIDLRDAK-LKTHVAFLF  133 (161)
T ss_pred             EEEEeeeehhhhhHhHHHHHHHHHhcccC------CcEEEEEEcccCCcch-hhHHHHHHH
Confidence            9999998 8888875 8888887765433      6889999999997644 343333333

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.49  E-value=1.6e-13  Score=100.90  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=67.8

Q ss_pred             EE-EeCCCCc---eeEeeec----cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         46 TQ-LGRRGIP---LLKHLKY----LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~~----~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      |. +|+.+||   ++..+.+    .+..++.++..++.....+.+.++..+  |||+|+++|......+++++|++++||
T Consensus         3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~   82 (164)
T cd04171           3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVV   82 (164)
T ss_pred             EEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEE
Confidence            44 9999999   5555542    233333333333333234444314445  999999999877777899999999999


Q ss_pred             eCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        116 DVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       116 Dit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      |.++   +++++.+..    +.. ...       +|+++|+||+|+.++
T Consensus        83 d~~~~~~~~~~~~~~~----~~~-~~~-------~~~ilv~NK~Dl~~~  119 (164)
T cd04171          83 AADEGIMPQTREHLEI----LEL-LGI-------KRGLVVLTKADLVDE  119 (164)
T ss_pred             ECCCCccHhHHHHHHH----HHH-hCC-------CcEEEEEECccccCH
Confidence            9987   555555432    221 122       378899999999653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.47  E-value=4.7e-13  Score=103.45  Aligned_cols=109  Identities=15%  Similarity=0.121  Sum_probs=75.9

Q ss_pred             EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEe-cCCCee--eeCCCchhchhhhhhhhcCC-cEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTY-SIGPRY--FRFPLVSRFLSLTTGLYRGT-MGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~-~~~~~i--wDt~G~e~~~~~~~~~~~~~-~~vilvy  115 (179)
                      .|+ +|++++|   ++.++. ..+...+.++ ........... +.+..+  ||++|+++++.....+++++ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            466 9999999   555554 3344444433 22222111211 103334  99999999999989999999 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNE-NSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~-~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.++. +++..+..|+..+.....   ..      +|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~------~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNK------IPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCC------CCEEEEecchhhcc
Confidence            99998 789988888777643321   22      68899999999965

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.47  E-value=1.7e-13  Score=104.71  Aligned_cols=119  Identities=12%  Similarity=-0.015  Sum_probs=76.9

Q ss_pred             EEE-EeCCCCc---eeEeee---ccCCCcc------------cCcceeeeeEEEEEecC-CCee--eeCCCchhchhhhh
Q psy15036         45 GTQ-LGRRGIP---LLKHLK---YLGTGTH------------GKTVGIVFPAISVTYSI-GPRY--FRFPLVSRFLSLTT  102 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~---~~~~~~~------------~~Ti~~~~~~k~v~~~~-~~~i--wDt~G~e~~~~~~~  102 (179)
                      +|+ +|+.+||   ++..+.   +.+...+            .++.|.++..+...+.. +..+  |||+|+++|..+..
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            566 9999999   444444   2333322            23455555444443430 3334  99999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC-CCHHHHHHHH
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE-VVTPDQIMFG  173 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~-Vs~~e~~~~a  173 (179)
                      .+++++|++++|||.++. .+.....|+..+..   ..      .|+++|+||+|+.+.+. ...+++.++.
T Consensus        84 ~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~  145 (194)
T cd01891          84 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LG------LKPIVVINKIDRPDARPEEVVDEVFDLF  145 (194)
T ss_pred             HHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cC------CCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999874 34444555554433   22      46788899999965443 2234555544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0075|consensus

Probab=99.46  E-value=7.7e-13  Score=95.80  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=83.2

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      ..+. +|-...|   +...+. +.+.+...||+|...  +.++-+ +-.+  ||.+||.+|++++..|+|+++++++|.|
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~tkg-nvtiklwD~gGq~rfrsmWerycR~v~aivY~VD   97 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVTKG-NVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD   97 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEeccC-ceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence            4454 8888888   444444 678899999999544  455545 4445  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..+++.....+.-+..+..... ..      .|+++.|||.|+.+
T Consensus        98 aad~~k~~~sr~EL~~LL~k~~l~g------ip~LVLGnK~d~~~  136 (186)
T KOG0075|consen   98 AADPDKLEASRSELHDLLDKPSLTG------IPLLVLGNKIDLPG  136 (186)
T ss_pred             cCCcccchhhHHHHHHHhcchhhcC------CcEEEecccccCcc
Confidence            9999999888766665543332 23      57788899999865

>cd01898 Obg Obg subfamily

Probab=99.45  E-value=4e-13  Score=99.70  Aligned_cols=121  Identities=12%  Similarity=0.002  Sum_probs=76.8

Q ss_pred             EE-EeCCCCc---eeEeeeccCC--Cc-ccCcceeeeeEEEEEecCCC-ee--eeCCCch----hchhhhhhhhc---CC
Q psy15036         46 TQ-LGRRGIP---LLKHLKYLGT--GT-HGKTVGIVFPAISVTYSIGP-RY--FRFPLVS----RFLSLTTGLYR---GT  108 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~~~~~--~~-~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e----~~~~~~~~~~~---~~  108 (179)
                      |+ +|..++|   +++.+.+...  .. ..+|....  ...+.++ +. .+  |||+|+.    .++.+...+++   .+
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            65 9999999   6655553211  11 11222211  1233455 54 55  9999963    33334455544   59


Q ss_pred             cEEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        109 MGFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       109 ~~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      |++++|+|.+++ ++++++..|++++.+..+..    ...|+++|+||+|+..++.+. +....+..
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~  141 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL----LEKPRIVVLNKIDLLDEEELF-ELLKELLK  141 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc----cccccEEEEEchhcCCchhhH-HHHHHHHh
Confidence            999999999999 89999999999998764321    115778999999997655443 33444443

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.40  E-value=1.1e-12  Score=100.79  Aligned_cols=111  Identities=11%  Similarity=-0.086  Sum_probs=76.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCC-ee--eeCCCchh---------chhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSR---------FLSLTT  102 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~---------~~~~~~  102 (179)
                      ..++|+ +|..|||   +++.+....   ...+.+|+...  ...+.+. +. .+  |||+|..+         |.... 
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT--TRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce--eEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            457887 9999999   555555321   12234455432  3455565 44 55  99999732         22222 


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ..++++|++++|+|.+++.++..+..|.+.+......+      .|+++|+||+|+.+..
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~------~~viiV~NK~Dl~~~~  169 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED------IPMILVLNKIDLLDDE  169 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC------CCEEEEEEccccCChH
Confidence            23678999999999999999999988888887665443      6889999999996543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.40  E-value=1.7e-12  Score=96.20  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             EEE-EeCCCCc---eeEeeecc-CCC-cc-cCcceeeeeEEEEEecCCCee--eeCCCchhc----------hhhhhhhh
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYL-GTG-TH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----------LSLTTGLY  105 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~-~~~-~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----------~~~~~~~~  105 (179)
                      +|+ +|+++||   ++..+... +.. .+ .+|.+...  ..+..+ +..+  |||+|+...          ..+. ...
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~   77 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--GHFDYK-YLRWQVIDTPGLLDRPLEERNTIEMQAIT-ALA   77 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--EEEccC-ceEEEEEECCCcCCccccCCchHHHHHHH-HHH
Confidence            576 9999999   55555532 211 11 12333322  233334 4555  999998421          1111 112


Q ss_pred             cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC
Q psy15036        106 RGTMGFLLIFDVTNENSF--KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV  165 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf--~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs  165 (179)
                      ..++++++|+|.++++++  +....|++.+.+....       .|+++|+||+|+.+.+.+.
T Consensus        78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~-------~pvilv~NK~Dl~~~~~~~  132 (168)
T cd01897          78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKN-------KPVIVVLNKIDLLTFEDLS  132 (168)
T ss_pred             hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCc-------CCeEEEEEccccCchhhHH
Confidence            336899999999998764  6667888888765433       5888999999997655544

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK04213 GTP-binding protein; Provisional

Probab=99.40  E-value=3.4e-13  Score=103.32  Aligned_cols=123  Identities=11%  Similarity=-0.009  Sum_probs=71.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCeeeeCCC-----------chhchhhhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRYFRFPL-----------VSRFLSLTTGLY  105 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G-----------~e~~~~~~~~~~  105 (179)
                      ..+||+ +|.++||   ++..+.+ .+...+.|+.  ++....+.++ +-.+|||+|           +++++.+...|+
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI   84 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence            467897 9999999   5655553 2333344433  3433444444 333399999           788888888887


Q ss_pred             c-CCcEEEEEEeCCChhhHHHH-HHHHHH---------HHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        106 R-GTMGFLLIFDVTNENSFKDV-EKWLLQ---------IKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       106 ~-~~~~vilvyDit~~~Sf~~l-~~w~~~---------i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      + +++.+.+++.+.+..++.++ ..|...         +......+      .|+++|+||+|+.+.+   .+.+.++++
T Consensus        85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~p~iiv~NK~Dl~~~~---~~~~~~~~~  155 (201)
T PRK04213         85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG------IPPIVAVNKMDKIKNR---DEVLDEIAE  155 (201)
T ss_pred             HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC------CCeEEEEECccccCcH---HHHHHHHHH
Confidence            6 55544444444444555444 344211         11111122      5788999999996543   345556655


Q ss_pred             hh
Q psy15036        175 TQ  176 (179)
Q Consensus       175 ~~  176 (179)
                      ..
T Consensus       156 ~~  157 (201)
T PRK04213        156 RL  157 (201)
T ss_pred             Hh
Confidence            44

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.37  E-value=3.2e-12  Score=109.45  Aligned_cols=107  Identities=9%  Similarity=0.001  Sum_probs=78.5

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeecc---CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYL---GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTG  103 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~---~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~  103 (179)
                      ...+||+ +|+++||   +++.+...   ....+ |....++....+.++ +.++  |||+|+.++..        ....
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~-g~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELN-GILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEEC-CEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            3468997 9999999   66555532   22333 333456667788888 8877  99999865543        2346


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +++.+|++++|||.+++.+++..  |+..+..   .+      .|+++|+||+|+.+
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~------~piIlV~NK~Dl~~  324 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SK------KPFILVLNKIDLKI  324 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CC------CCEEEEEECccCCC
Confidence            88999999999999999998876  7766542   22      57889999999964

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.33  E-value=4.6e-12  Score=89.12  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCccc-CcceeeeeEEEEEecCCCeeeeCCCchhchhhhhhhhcCCcEEEEEEeC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHG-KTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDV  117 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~-~Ti~~~~~~k~v~~~~~~~iwDt~G~e~~~~~~~~~~~~~~~vilvyDi  117 (179)
                      +|++ +|+.|||   ++.++. ..+...+. +|++                        +..+...+++.++++++||+.
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------------------~~~~~~~~~~s~~~~~~v~~~   56 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------------------IDVYDPTSYESFDVVLQCWRV   56 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh------------------------hhhccccccCCCCEEEEEEEc
Confidence            5888 9999999   444433 44444443 4444                        122335678899999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        118 TNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       118 t~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ++++||+++  |...+......+      +|++++|||.|+.+++++..+++..|++..
T Consensus        57 ~~~~s~~~~--~~~~i~~~~k~d------l~~~~~~nk~dl~~~~~~~~~~~~~~~~~s  107 (124)
T smart00010       57 DDRDSADNK--NVPEVLVGNKSD------LPILVGGNRDVLEEERQVATEEGLEFAETS  107 (124)
T ss_pred             cCHHHHHHH--hHHHHHhcCCCC------CcEEEEeechhhHhhCcCCHHHHHHHHHHh
Confidence            999999887  988877654444      678899999999777789998898888653

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.32  E-value=6.5e-12  Score=104.66  Aligned_cols=111  Identities=10%  Similarity=-0.078  Sum_probs=78.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC--C-CcccCcceeeeeEEEEEecCCCee--eeCCCc---------hhchhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG--T-GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV---------SRFLSLTTG  103 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~-~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~---------e~~~~~~~~  103 (179)
                      ..++|+ +|..++|   +++.+.+..  . +...+|..  ...+.+.+.++..+  |||+|.         +.|.... .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d--~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLD--PTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccC--CEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            358897 9999999   666655321  1 22344543  44566777425666  999997         3343322 2


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      .++++|++++|+|.+++.+++.+..|.+.+.+....+      .|+++|+||+|+...
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~------~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAED------IPQLLVYNKIDLLDE  316 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCC------CCEEEEEEeecCCCh
Confidence            5889999999999999999999888887777655433      578899999999653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.32  E-value=8.5e-12  Score=91.25  Aligned_cols=115  Identities=11%  Similarity=-0.023  Sum_probs=76.2

Q ss_pred             EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhhhhhc--CCcEEEE
Q psy15036         48 LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTTGLYR--GTMGFLL  113 (179)
Q Consensus        48 lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~~~~~--~~~~vil  113 (179)
                      +|..|||   ++..+.+. +...+.++...+.....+.++ +..+  |||+|++.+..      +...++.  +++++++
T Consensus         2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG-GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC-CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            7999999   55555532 233333444445555667777 7666  99999988764      3566775  9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |+|.++.++..   .|..++.+.   +      .|+++|+||+|+.+.+.+..+ ...+++..
T Consensus        81 v~d~~~~~~~~---~~~~~~~~~---~------~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~  130 (158)
T cd01879          81 VVDATNLERNL---YLTLQLLEL---G------LPVVVALNMIDEAEKRGIKID-LDKLSELL  130 (158)
T ss_pred             EeeCCcchhHH---HHHHHHHHc---C------CCEEEEEehhhhcccccchhh-HHHHHHhh
Confidence            99998865533   454444432   2      578899999999765555443 34555543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.31  E-value=2.1e-11  Score=86.83  Aligned_cols=109  Identities=30%  Similarity=0.441  Sum_probs=79.5

Q ss_pred             EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         48 LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        48 lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      +|..|+|   ++..+....  .....+|. .++........ +..  +  ||++|+..+......+++.++++++|||.+
T Consensus         2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           2 VGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            7999999   666655332  35556666 66665666543 223  2  999999999888888999999999999999


Q ss_pred             ChhhHHHHHHHHHHHH-HHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036        119 NENSFKDVEKWLLQIK-VMDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~-~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      ++.++..+..|+.... ......      .|+++|+||+|+......
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~------~~~ivv~nk~D~~~~~~~  120 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGEN------IPIILVGNKIDLPEERVV  120 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCC------CcEEEEEeccccccccch
Confidence            9999999988843332 222232      688899999999764333

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.27  E-value=3e-11  Score=89.34  Aligned_cols=102  Identities=12%  Similarity=0.007  Sum_probs=66.3

Q ss_pred             EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEec--CCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYS--IGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~--~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      |+ +|+.++|   +++.+. ..+...+.++...+.....+..+  .+..+  |||+|++.|..++..+++.+|++++|+|
T Consensus         3 i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d   82 (168)
T cd01887           3 VTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVA   82 (168)
T ss_pred             EEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEE
Confidence            55 9999999   555554 33333322233323322333332  13344  9999999999999989999999999999


Q ss_pred             CCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .++.   ++++.+..    ++.   ..      .|+++|+||+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~----~~~---~~------~p~ivv~NK~Dl~~  116 (168)
T cd01887          83 ADDGVMPQTIEAIKL----AKA---AN------VPFIVALNKIDKPN  116 (168)
T ss_pred             CCCCccHHHHHHHHH----HHH---cC------CCEEEEEEceeccc
Confidence            9984   44443322    222   22      47788999999964

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.26  E-value=2.8e-11  Score=104.56  Aligned_cols=107  Identities=13%  Similarity=0.030  Sum_probs=73.8

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCC--cccCcceeeeeEEEEEecCCCee--eeCCCchh--------chhhhhhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTG--THGKTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~~~  106 (179)
                      ..||+ +|.++||   +++++.+....  ...|.+..+.....+.++ +..+  |||+|++.        +......+++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN-GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC-CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            36787 9999999   66666643222  223333334445566677 7777  99999763        4445667899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++|++|+|||.++..++.. ..|...+++   .+      .|++||+||+|+..
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~------~piilV~NK~Dl~~  160 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR---SG------KPVILAANKVDDER  160 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cC------CCEEEEEECccCCc
Confidence            9999999999999877653 344444443   22      58899999999964

>KOG0076|consensus

Probab=99.25  E-value=1.1e-11  Score=92.13  Aligned_cols=118  Identities=15%  Similarity=0.151  Sum_probs=89.4

Q ss_pred             eeEEE-EeCCCCc---ee--------EeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCC
Q psy15036         43 NFGTQ-LGRRGIP---LL--------KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~--------~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~  108 (179)
                      .+-|+ +|.+..|   ++        ..+....+++..||+|....  .+.++ +.++  ||..||+..++++..||..+
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~-~~~l~fwdlgGQe~lrSlw~~yY~~~   93 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC-NAPLSFWDLGGQESLRSLWKKYYWLA   93 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec-cceeEEEEcCChHHHHHHHHHHHHHh
Confidence            35576 9999999   11        12224445777889996654  55667 6776  99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIM  171 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~  171 (179)
                      |++|+++|.++++-|+....-++.+... ....      .|+++.+||.|+++  .++..|.+.
T Consensus        94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg------~p~L~lankqd~q~--~~~~~El~~  149 (197)
T KOG0076|consen   94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEG------APVLVLANKQDLQN--AMEAAELDG  149 (197)
T ss_pred             ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcC------Cchhhhcchhhhhh--hhhHHHHHH
Confidence            9999999999999999997766666433 3333      67888899999976  455555443

>KOG0074|consensus

Probab=99.24  E-value=3e-11  Score=87.13  Aligned_cols=111  Identities=20%  Similarity=0.216  Sum_probs=88.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCe-e--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-Y--FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-i--wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ...+||+ +|-...|   ++..+....+....||-|  |..+.+..+ +.- +  ||.+||...+..+.+||.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCC--cceEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            3579997 9999999   666666666777889998  556778777 633 3  9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHH-HHhCCccCccccceEEEEeeCCCcCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIK-VMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~-~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.|.+++.-|+++..-+-++. ...-..      .|+.+.+||-|+-.
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~------vpvlIfankQdllt  133 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAE------VPVLIFANKQDLLT  133 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhc------cceeehhhhhHHHh
Confidence            999999999999965544444 444333      67777799999865

>KOG1707|consensus

Probab=99.24  E-value=2.8e-11  Score=104.17  Aligned_cols=116  Identities=13%  Similarity=0.068  Sum_probs=80.8

Q ss_pred             eeeEEE-EeCCCCc----eeEeeeccCCCcccCc-----ceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCc
Q psy15036         42 FNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKT-----VGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~T-----i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ...+|| +||.|||    ++..+...|++...+-     |..++.     -+ +.++  .|++..+.-+.....-++.+|
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt-----Pe-~vpt~ivD~ss~~~~~~~l~~EirkA~   81 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT-----PE-NVPTSIVDTSSDSDDRLCLRKEIRKAD   81 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC-----cC-cCceEEEecccccchhHHHHHHHhhcC
Confidence            468998 9999999    3333334455544432     222221     11 1112  788765555555577899999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036        110 GFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP  167 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~  167 (179)
                      ++.++|++++++|.+.+ .+|+..+++..+..    ...||||||||+|+......+.+
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~----~~~PVILvGNK~d~~~~~~~s~e  136 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDY----HETPVILVGNKSDNGDNENNSDE  136 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCC----ccCCEEEEeeccCCccccccchh
Confidence            99999999999999999 48999999987543    12799999999999775555333

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.24  E-value=3.3e-11  Score=104.08  Aligned_cols=108  Identities=12%  Similarity=-0.005  Sum_probs=76.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCc----------hhchhhh-h
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLV----------SRFLSLT-T  102 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~----------e~~~~~~-~  102 (179)
                      ...||+ +|.++||   ++..+.+..  .....++...+.....+.++ +..+  |||+|.          +.|..+. .
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~-~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG-GKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC-CEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            358997 9999999   565555331  12233444455555677788 8777  999994          4555444 3


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .+++++|++++|||.++..|+..+. |+..+..   ..      .|+|+|+||+||.+
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~------~piIiV~NK~Dl~~  336 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AG------RALVLAFNKWDLVD  336 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cC------CCEEEEEECcccCC
Confidence            4689999999999999999998874 4444433   22      57889999999964

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.23  E-value=6.5e-11  Score=98.08  Aligned_cols=122  Identities=11%  Similarity=-0.029  Sum_probs=80.3

Q ss_pred             EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCCCee--eeCCCchh----chhhhhhhhc---CCcEEE
Q psy15036         48 LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSR----FLSLTTGLYR---GTMGFL  112 (179)
Q Consensus        48 lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~----~~~~~~~~~~---~~~~vi  112 (179)
                      ||.+++|   +++.+....  ...|. .|+....  ..+.+.++..+  ||++|.-+    ...+...|++   .+++++
T Consensus       164 VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~--G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI  241 (335)
T PRK12299        164 VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL--GVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLL  241 (335)
T ss_pred             EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE--EEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEE
Confidence            9999999   555555321  11222 2333322  23445315555  99999732    2234445444   699999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +|+|++++++++++..|.+++..+.+.-    ...|+++|+||+|+.+.+.+..++.+.++++
T Consensus       242 ~ViD~s~~~s~e~~~~~~~EL~~~~~~L----~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~  300 (335)
T PRK12299        242 HLVDIEAVDPVEDYKTIRNELEKYSPEL----ADKPRILVLNKIDLLDEEEEREKRAALELAA  300 (335)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHhhhhc----ccCCeEEEEECcccCCchhHHHHHHHHHHHh
Confidence            9999999999999999999998875421    0157889999999977666665556655543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.23  E-value=2.4e-11  Score=104.35  Aligned_cols=107  Identities=12%  Similarity=-0.061  Sum_probs=75.4

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh--------hhhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL--------TTGLY  105 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~--------~~~~~  105 (179)
                      .+||+ +|..++|   ++..+....   ...+ +....++..+.+.++ +.++  |||+|.+.+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~-g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINLD-GIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEEC-CeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            47897 9999999   555555321   2222 222234556677788 8777  999998765432        23478


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      +++|++++|||.+++.+++....|..     . .+      .|+++|+||+|+.+.+.
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~-~~------~piiiV~NK~DL~~~~~  338 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-----L-KD------KPVIVVLNKADLTGEID  338 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-----c-CC------CCcEEEEEhhhccccch
Confidence            99999999999999999987766644     2 22      57889999999965443

>KOG0072|consensus

Probab=99.22  E-value=1.5e-10  Score=83.71  Aligned_cols=110  Identities=13%  Similarity=0.121  Sum_probs=85.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ...+++ +|-.|.|   ++.++.........||+|.  ...++.+. |-+.  ||..||-..+..++.||.+++++|+|.
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf--nve~v~yK-NLk~~vwdLggqtSirPyWRcYy~dt~avIyVV   93 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF--NVETVPYK-NLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV   93 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc--Cccccccc-cccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence            467887 9999999   6667765556677899984  44567777 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHH-HHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQ-IKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~-i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.+|++.......-+.. +.+..-..      ..+++++||.|...
T Consensus        94 Dssd~dris~a~~el~~mL~E~eLq~------a~llv~anKqD~~~  133 (182)
T KOG0072|consen   94 DSSDRDRISIAGVELYSMLQEEELQH------AKLLVFANKQDYSG  133 (182)
T ss_pred             eccchhhhhhhHHHHHHHhccHhhcC------ceEEEEeccccchh
Confidence            99999888777544433 33332232      46778899999876

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.19  E-value=1.2e-10  Score=84.75  Aligned_cols=105  Identities=11%  Similarity=-0.020  Sum_probs=70.2

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhhcC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLYRG  107 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~~~  107 (179)
                      +||+ +|+.|+|   ++..+.....  ....++...++....+.++ +..+  |||+|...+..        ....+++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG-GIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC-CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            4787 9999999   4444443211  1112233334444556666 6565  99999765532        23356789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      +|++++|+|++++.+..+.+.|..     ...       .|+++|+||+|+.+.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~-------~~vi~v~nK~D~~~~  122 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL-----PAD-------KPIIVVLNKSDLLPD  122 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh-----hcC-------CCEEEEEEchhcCCc
Confidence            999999999999999888766543     222       588899999998653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.18  E-value=1.4e-10  Score=102.74  Aligned_cols=105  Identities=15%  Similarity=0.048  Sum_probs=74.5

Q ss_pred             EEE-EeCCCCc---eeEeeec--------cCCCcccCc------ceeeeeEEEEEe-----cCCCee----eeCCCchhc
Q psy15036         45 GTQ-LGRRGIP---LLKHLKY--------LGTGTHGKT------VGIVFPAISVTY-----SIGPRY----FRFPLVSRF   97 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~--------~~~~~~~~T------i~~~~~~k~v~~-----~~~~~i----wDt~G~e~~   97 (179)
                      +|+ +|..++|   ++.++..        .+...+..+      .|+++..+.+.+     + +..+    |||+|+++|
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-GETYVLNLIDTPGHVDF   83 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-CCEEEEEEEECCCcHHH
Confidence            465 9999999   4444331        122333332      366665544443     3 4443    999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ......+++.+|++|+|||.++..+++....|...+.    .+      .|+++|+||+|+.+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~------ipiIiViNKiDl~~  136 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----ND------LEIIPVINKIDLPS  136 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cC------CCEEEEEECcCCCc
Confidence            9999999999999999999999877777777755432    22      57889999999964

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15494 era GTPase Era; Provisional

Probab=99.18  E-value=1.7e-10  Score=95.76  Aligned_cols=117  Identities=17%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCch-hchhhhh-------h
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS-RFLSLTT-------G  103 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e-~~~~~~~-------~  103 (179)
                      ..+||+ +|+++||   ++..+.+..    .+.+.+|..  .....+..+ +.++  |||+|+. .+..+..       .
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~--~~~~~~~~~-~~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRS--IITGIITLK-DTQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccC--cEEEEEEeC-CeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456887 9999999   555554332    133344543  334556677 7777  9999984 3333222       2


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      .++++|++++|+|.+  ++|..+. .|++.++..  .       .|+++|+||+|+.++   ..+++.+++.+
T Consensus       128 ~l~~aDvil~VvD~~--~s~~~~~~~il~~l~~~--~-------~p~IlViNKiDl~~~---~~~~~~~~l~~  186 (339)
T PRK15494        128 SLHSADLVLLIIDSL--KSFDDITHNILDKLRSL--N-------IVPIFLLNKIDIESK---YLNDIKAFLTE  186 (339)
T ss_pred             HhhhCCEEEEEEECC--CCCCHHHHHHHHHHHhc--C-------CCEEEEEEhhcCccc---cHHHHHHHHHh
Confidence            477999999999855  4677774 455555432  1       234578999999653   24566666544

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.17  E-value=1.1e-10  Score=86.78  Aligned_cols=108  Identities=13%  Similarity=0.026  Sum_probs=70.4

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc-----hhchhhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV-----SRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~-----e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ||+ +|.++||   +++.+.+.+.. ..+|.+       +.+. +..+|||+|+     +.++.+. ..++++|++++||
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~-------v~~~-~~~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~   72 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQA-------VEFN-DKGDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVH   72 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-CccceE-------EEEC-CCCcccCCccccCCHHHHHHHH-HHHhcCCEEEEEE
Confidence            676 9999999   66666554321 123333       2333 3335999997     3333333 2478999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |.++.+++  +..|+..+   ...       .|+++++||+|+.+   ...++..+++++.+
T Consensus        73 d~~~~~s~--~~~~~~~~---~~~-------~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~  119 (158)
T PRK15467         73 GANDPESR--LPAGLLDI---GVS-------KRQIAVISKTDMPD---ADVAATRKLLLETG  119 (158)
T ss_pred             eCCCcccc--cCHHHHhc---cCC-------CCeEEEEEccccCc---ccHHHHHHHHHHcC
Confidence            99999887  34565543   122       47889999999954   34566777776654

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.16  E-value=9.4e-11  Score=87.17  Aligned_cols=118  Identities=17%  Similarity=0.102  Sum_probs=72.6

Q ss_pred             EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCCCee--eeCCCchh----chhhh---hhhhcCCcEEE
Q psy15036         48 LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSR----FLSLT---TGLYRGTMGFL  112 (179)
Q Consensus        48 lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~----~~~~~---~~~~~~~~~vi  112 (179)
                      +|.+|||   +++.+.+..  ...+ .+|.....  ..+.++.+..+  |||+|...    ...+.   ..+++++++++
T Consensus         2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            7999999   666655432  2222 23333322  22333213444  99999732    22222   33578899999


Q ss_pred             EEEeCCCh------hhHHHHHHHHHHHHHHhCCc-cCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036        113 LIFDVTNE------NSFKDVEKWLLQIKVMDGAL-FTHFELQIVFMRGCLELLQRCREVVTP  167 (179)
Q Consensus       113 lvyDit~~------~Sf~~l~~w~~~i~~~~~~~-~~~~~~~~iilvGnK~Dl~~~r~Vs~~  167 (179)
                      +|+|.+++      ++++.+..|...+....... +-.....|+++|+||+|+...+.+...
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~  141 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEE  141 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHH
Confidence            99999998      68999999988887554210 000001578889999999765554443

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK11058 GTPase HflX; Provisional

Probab=99.15  E-value=1.8e-10  Score=98.28  Aligned_cols=108  Identities=9%  Similarity=-0.049  Sum_probs=72.9

Q ss_pred             eEEE-EeCCCCc---eeEeeeccC--C-CcccCcceeeeeEEEEEecCCC-ee--eeCCCchhc--hhhhh------hhh
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLG--T-GTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSRF--LSLTT------GLY  105 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~--~-~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~~--~~~~~------~~~  105 (179)
                      .+|+ +|.+++|   ++..+.+..  . +....|.  +...+.+.+. +. .+  |||+|..+.  ..+..      ..+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTl--d~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~  274 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATL--DPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQET  274 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCc--CCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            5786 9999999   555555321  1 1222344  3344566666 53 54  999998442  22222      346


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +.+|++++|+|.+++.+++.+..|...+......+      .|+++|+||+|+..
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~------~pvIiV~NKiDL~~  323 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE------IPTLLVMNKIDMLD  323 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC------CCEEEEEEcccCCC
Confidence            89999999999999999999877766666554333      58889999999964

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.13  E-value=3e-10  Score=93.98  Aligned_cols=123  Identities=12%  Similarity=0.008  Sum_probs=78.1

Q ss_pred             EEE-EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCC-Cee--eeCCCchh----chhhhhhhhc---C
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIG-PRY--FRFPLVSR----FLSLTTGLYR---G  107 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~-~~i--wDt~G~e~----~~~~~~~~~~---~  107 (179)
                      .|. +|.+++|   +++.+....  ...|. +|.....  ..+.++ + ..+  ||++|..+    ...+...|++   .
T Consensus       159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~i--g~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNL--GVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEE--EEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            354 9999999   555555321  11221 2222222  234555 4 555  99999743    2245556655   5


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        108 TMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       108 ~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      ++++++|+|+++.   ++++++..|.+++..+...-    ...|++||+||+|+.+.+. ..+..++++++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l----~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~  301 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPEL----AEKPRIVVLNKIDLLDEEE-LAELLKELKKA  301 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhh----ccCCEEEEEeCccCCChHH-HHHHHHHHHHH
Confidence            9999999999987   79999999999988764321    1157888999999976433 23445555543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01895 EngA2 EngA2 subfamily

Probab=99.11  E-value=4.9e-10  Score=82.60  Aligned_cols=115  Identities=15%  Similarity=0.031  Sum_probs=69.5

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc----------hhh-hhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----------LSL-TTG  103 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----------~~~-~~~  103 (179)
                      .+||+ +|+.|+|   ++..+....  .....+....+.....+..+ +..+  |||+|..+.          ... ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD-GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC-CeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            46887 9999999   444444221  11112222222333455566 6666  999997443          111 123


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      .++++|++++|+|.+++.++.... ++..+..   ..      .|+++++||+|+.+.+....++
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~------~~~iiv~nK~Dl~~~~~~~~~~  135 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLR-IAGLILE---EG------KALVIVVNKWDLVEKDSKTMKE  135 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cC------CCEEEEEeccccCCccHHHHHH
Confidence            578999999999999988876643 3333322   12      4788899999997654333333

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.08  E-value=8.7e-10  Score=97.41  Aligned_cols=105  Identities=10%  Similarity=-0.024  Sum_probs=70.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCC-ee--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ...+|+ +|..++|   ++.++.. .+...+.+.+..+.....+.++ +. .+  |||+|++.|..++...++.+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            345676 9999999   5555542 2333333333333333455665 44 56  9999999999999999999999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        114 IFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       114 vyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||.++   +++++.+.       .....+      .|+++++||+|+.+
T Consensus       165 VVda~dgv~~qT~e~i~-------~~~~~~------vPiIVviNKiDl~~  201 (587)
T TIGR00487       165 VVAADDGVMPQTIEAIS-------HAKAAN------VPIIVAINKIDKPE  201 (587)
T ss_pred             EEECCCCCCHhHHHHHH-------HHHHcC------CCEEEEEECccccc
Confidence            999886   45554432       111122      57889999999854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.08  E-value=5.3e-10  Score=98.83  Aligned_cols=117  Identities=14%  Similarity=0.023  Sum_probs=81.9

Q ss_pred             EE-EeCCCCc---eeEeeec----cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         46 TQ-LGRRGIP---LLKHLKY----LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~~----~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      |. +|..++|   +++.+.+    .+.+++.+++.+++....+.++ +..+  ||++|+++|......++.++|++++|+
T Consensus         3 I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVV   81 (581)
T TIGR00475         3 IATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVV   81 (581)
T ss_pred             EEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEE
Confidence            54 9999999   6666653    3445555666666655667777 6555  999999999888888899999999999


Q ss_pred             eCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC--CHHHHHHHHhh
Q psy15036        116 DVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV--VTPDQIMFGST  175 (179)
Q Consensus       116 Dit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V--s~~e~~~~a~~  175 (179)
                      |.++   +++++.+..    +.. .+-       +.+++|+||+|+.++..+  ..++.+++.+.
T Consensus        82 Da~~G~~~qT~ehl~i----l~~-lgi-------~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~  134 (581)
T TIGR00475        82 DADEGVMTQTGEHLAV----LDL-LGI-------PHTIVVITKADRVNEEEIKRTEMFMKQILNS  134 (581)
T ss_pred             ECCCCCcHHHHHHHHH----HHH-cCC-------CeEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9998   677766532    221 111       348899999999764433  24456666544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.08  E-value=6.7e-10  Score=83.78  Aligned_cols=109  Identities=15%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee-eeCCCc----------hhchhhhhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV----------SRFLSLTTGL  104 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~----------e~~~~~~~~~  104 (179)
                      +...+|+ +|..|+|   ++..+... +...+.++.+.+.....+.++ +.-. |||+|.          +.+..+...|
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            3567887 9999999   56555543 334445555543333333444 4333 999994          3455555667


Q ss_pred             hcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        105 YRG---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       105 ~~~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++.   ++++++|+|.+++-+...... +..+..   ..      .|+++|+||+|+..
T Consensus        95 l~~~~~~~~ii~vvd~~~~~~~~~~~~-~~~~~~---~~------~pviiv~nK~D~~~  143 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRHPLKELDLEM-LEWLRE---RG------IPVLIVLTKADKLK  143 (179)
T ss_pred             HHhChhhcEEEEEecCCCCCCHHHHHH-HHHHHH---cC------CCEEEEEECcccCC
Confidence            764   579999999988766655532 233322   12      47888999999854

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.07  E-value=5.1e-10  Score=99.10  Aligned_cols=115  Identities=11%  Similarity=0.014  Sum_probs=76.0

Q ss_pred             eCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh------hhhhhc--CCcEEEEE
Q psy15036         49 GRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL------TTGLYR--GTMGFLLI  114 (179)
Q Consensus        49 G~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~------~~~~~~--~~~~vilv  114 (179)
                      |+++||   +++++.+. ......|+...+.....+.++ +..+  |||+|++++...      .+.|+.  ++|++++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~-~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ-GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC-CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            889999   66666533 223334555566666677777 7777  999999988654      344544  78999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|.++.+   +...+..++.+   .+      .|+++|+||+|+.+++.+.. +.++++++.+
T Consensus        80 vDat~le---r~l~l~~ql~~---~~------~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~lg  129 (591)
T TIGR00437        80 VDASNLE---RNLYLTLQLLE---LG------IPMILALNLVDEAEKKGIRI-DEEKLEERLG  129 (591)
T ss_pred             ecCCcch---hhHHHHHHHHh---cC------CCEEEEEehhHHHHhCCChh-hHHHHHHHcC
Confidence            9998743   22233333332   33      58889999999977666653 4566666543

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.07  E-value=1e-09  Score=93.71  Aligned_cols=104  Identities=11%  Similarity=-0.047  Sum_probs=68.2

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCC--cccCcceeeeeEEEEEecCCCee--eeCCCchh--------chhhhhhhhcC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTG--THGKTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGLYRG  107 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~~~~  107 (179)
                      .||+ +|.+|||   ++.++.+....  ...+.+..+.....+.++ +..+  |||+|++.        +......++++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL-GREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC-CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            4786 9999999   55555533211  112222234445567777 7666  99999987        33345567899


Q ss_pred             CcEEEEEEeCCChhhHH--HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        108 TMGFLLIFDVTNENSFK--DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~--~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +|++++|+|.++..+..  .+..|+...      +      .|+++|+||+|+.+
T Consensus        81 ad~il~vvd~~~~~~~~~~~~~~~l~~~------~------~piilv~NK~D~~~  123 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADEEIAKILRKS------N------KPVILVVNKVDGPD  123 (435)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHc------C------CcEEEEEECccCcc
Confidence            99999999998854433  334454321      2      58889999999754

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.03  E-value=5.1e-09  Score=78.65  Aligned_cols=119  Identities=17%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC---------CC----cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG---------TG----THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTT  102 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~---------~~----~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~  102 (179)
                      ...||+ +|.-++|   .++.+....         ..    ....|+..+|.  .+.++.+..+  +||+||+||..++.
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcCcceEEEecCCCcHHHHHHHH
Confidence            457897 9999999   222222111         11    22356777775  3444513555  99999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      .+.+++.++|++.|-+....| .....++.+....+        +|+++..||.||.+  .-+.++.+++-
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--------ip~vVa~NK~DL~~--a~ppe~i~e~l  146 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--------IPVVVAINKQDLFD--ALPPEKIREAL  146 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--------CCEEEEeeccccCC--CCCHHHHHHHH
Confidence            999999999999999999999 44455544443322        57888899999987  55555555543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.03  E-value=4.8e-10  Score=89.15  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=59.1

Q ss_pred             hhchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036         95 SRFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus        95 e~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      ++|..+.+.+++++|++++|||+++++ ||+.+.+|+..+..   .+      +|++||+||+||.+++++..++++.++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~------i~~vIV~NK~DL~~~~~~~~~~~~~~~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QN------IEPIIVLNKIDLLDDEDMEKEQLDIYR   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CC------CCEEEEEECcccCCCHHHHHHHHHHHH
Confidence            788889999999999999999999887 99999999987653   22      577889999999776777666666665


Q ss_pred             h
Q psy15036        174 S  174 (179)
Q Consensus       174 ~  174 (179)
                      +
T Consensus        95 ~   95 (245)
T TIGR00157        95 N   95 (245)
T ss_pred             H
Confidence            4

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.02  E-value=1.8e-09  Score=91.91  Aligned_cols=106  Identities=16%  Similarity=0.020  Sum_probs=69.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh----------h-
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL----------T-  101 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~----------~-  101 (179)
                      ..+||+ +|..++|   ++..+.+..   ...+..|. .+.....+..+ +..+  |||+|..++...          . 
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt-~~~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT-RDSIDIPFERN-GKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce-ECcEeEEEEEC-CcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            458997 9999999   555554321   12222222 23333455667 7776  999997554322          1 


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      ..+++.+|++|+|+|.++..+..... ++..+.+   ..      .|+++|+||+|+.
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~------~~iiiv~NK~Dl~  296 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AG------KALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cC------CcEEEEEECcccC
Confidence            34689999999999999988877654 3333332   12      4788999999996

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01894 EngA1 EngA1 subfamily

Probab=99.01  E-value=7.8e-10  Score=80.48  Aligned_cols=103  Identities=10%  Similarity=-0.092  Sum_probs=64.6

Q ss_pred             EEeCCCCc---eeEeeecc---CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhhcCCcE
Q psy15036         47 QLGRRGIP---LLKHLKYL---GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLYRGTMG  110 (179)
Q Consensus        47 vlG~~gvG---~~~~~~~~---~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~~~~~~  110 (179)
                      ++|..|||   ++..+...   +.+.+.++ ..+...+.+..+ +..+  |||+|.+.+..        ....+++.+|+
T Consensus         2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGV-TRDRIYGEAEWG-GREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             ccCCCCCCHHHHHHHHhCCcEEeecCCCCc-eeCceeEEEEEC-CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            48999999   54444422   12222222 223344556666 6666  99999987643        33456889999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      +++|+|.++..+..... ....+++.   .      .|+++|+||+|+.+.
T Consensus        80 ii~v~d~~~~~~~~~~~-~~~~~~~~---~------~piiiv~nK~D~~~~  120 (157)
T cd01894          80 ILFVVDGREGLTPADEE-IAKYLRKS---K------KPVILVVNKVDNIKE  120 (157)
T ss_pred             EEEEEeccccCCccHHH-HHHHHHhc---C------CCEEEEEECcccCCh
Confidence            99999998765554431 22222221   2      578899999999764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.00  E-value=1.8e-09  Score=80.97  Aligned_cols=72  Identities=11%  Similarity=-0.024  Sum_probs=53.5

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+... +..+  ||++|+.++......+++.+|++++|+|.++..+... ..++..+..   ..      .|+++|+||
T Consensus        55 ~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~------~~i~iv~nK  123 (189)
T cd00881          55 ATFEWP-DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GG------LPIIVAINK  123 (189)
T ss_pred             EEEeeC-CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CC------CCeEEEEEC
Confidence            344444 4445  9999999998889999999999999999988765543 334444443   22      578899999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+..
T Consensus       124 ~D~~~  128 (189)
T cd00881         124 IDRVG  128 (189)
T ss_pred             CCCcc
Confidence            99965

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.99  E-value=1.5e-09  Score=92.68  Aligned_cols=98  Identities=8%  Similarity=-0.100  Sum_probs=63.1

Q ss_pred             cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHH--HHHHhCCccCccc
Q psy15036         70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQ--IKVMDGALFTHFE  145 (179)
Q Consensus        70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~--i~~~~~~~~~~~~  145 (179)
                      .+..+.....+..+ +..+  ||++|+++|.......++.+|++++|+|.++.+++... .+.+.  +.+....      
T Consensus        70 g~Tid~~~~~~~~~-~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~~~------  141 (426)
T TIGR00483        70 GVTIDVAHWKFETD-KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTLGI------  141 (426)
T ss_pred             CceEEEEEEEEccC-CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHcCC------
Confidence            33344444556666 6556  99999999876666678899999999999998765322 22222  2222222      


Q ss_pred             cceEEEEeeCCCcCCCCC----CCHHHHHHHHhhh
Q psy15036        146 LQIVFMRGCLELLQRCRE----VVTPDQIMFGSTQ  176 (179)
Q Consensus       146 ~~~iilvGnK~Dl~~~r~----Vs~~e~~~~a~~~  176 (179)
                       +++++|+||+|+.+...    ...++.++++++.
T Consensus       142 -~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~  175 (426)
T TIGR00483       142 -NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKV  175 (426)
T ss_pred             -CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHc
Confidence             57888999999964211    2245666666554

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.98  E-value=2.3e-09  Score=81.44  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=67.9

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCC----------chhchhhh
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPL----------VSRFLSLT  101 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G----------~e~~~~~~  101 (179)
                      ..+...||+ +|+.|+|   ++..+... +...+.++.|.+.....+.++  ..+  |||+|          ++++..+.
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            444678897 9999999   66665543 345556666644332223323  334  99999          35666666


Q ss_pred             hhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        102 TGLYRGT---MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       102 ~~~~~~~---~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..|++.+   +++++|+|.+++.+....  ++....+.  ..      .|+++++||+|+.+
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~------~~~iiv~nK~Dl~~  149 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YG------IPVLIVLTKADKLK  149 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cC------CcEEEEEECcccCC
Confidence            7777765   578888898876554331  21111111  12      46788899999854

>cd04167 Snu114p Snu114p subfamily

Probab=98.97  E-value=2.6e-09  Score=82.94  Aligned_cols=61  Identities=13%  Similarity=0.042  Sum_probs=48.5

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      |||+|+++|......+++.+|++++|+|.++..++.. ..|+..+...   .      .|+++|+||+|+.
T Consensus        76 iDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---~------~p~iiviNK~D~~  136 (213)
T cd04167          76 IDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---G------LPIVLVINKIDRL  136 (213)
T ss_pred             EECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---C------CCEEEEEECcccC
Confidence            9999999998888899999999999999998777643 3454444321   2      4788899999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.94  E-value=2.8e-09  Score=96.70  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=70.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ..-.|+ +|..++|   ++..+. ..+.....+.+..+.....+.++ +..+  |||+|++.|..++...++.+|++|||
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~-~~~ItfiDTPGhe~F~~m~~rga~~aDiaILV  367 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN-GGKITFLDTPGHEAFTAMRARGAQVTDIVVLV  367 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC-CEEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence            345565 9999999   554443 22222222222222323456666 6666  99999999999999999999999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        115 FDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       115 yDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ||.++   +++++.+.       .....+      .|+|+++||+|+.+
T Consensus       368 VdAddGv~~qT~e~i~-------~a~~~~------vPiIVviNKiDl~~  403 (787)
T PRK05306        368 VAADDGVMPQTIEAIN-------HAKAAG------VPIIVAINKIDKPG  403 (787)
T ss_pred             EECCCCCCHhHHHHHH-------HHHhcC------CcEEEEEECccccc
Confidence            99987   55555432       111222      57889999999954

>cd01889 SelB_euk SelB subfamily

Probab=98.93  E-value=4e-09  Score=80.38  Aligned_cols=107  Identities=17%  Similarity=0.064  Sum_probs=61.6

Q ss_pred             eEEE-EeCCCCc---eeEeeecc-----CCC-----cccCcceeeeeEEEEEe----------c-CCCee--eeCCCchh
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYL-----GTG-----THGKTVGIVFPAISVTY----------S-IGPRY--FRFPLVSR   96 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~-----~~~-----~~~~Ti~~~~~~k~v~~----------~-~~~~i--wDt~G~e~   96 (179)
                      ++|+ +|+.++|   ++..+...     +..     ....|++..+....+..          . .+..+  |||+|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            4686 9999999   44444321     111     11346665554444431          1 02233  99999976


Q ss_pred             chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         97 FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        97 ~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +........+.+|++++|+|.++..+......|.  +....  .      .|+++|+||+|+..
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~------~~~iiv~NK~Dl~~  134 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--C------KKLIVVLNKIDLIP  134 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--C------CCEEEEEECcccCC
Confidence            5333223345678999999998854444333332  12221  2      46778899999863

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.91  E-value=4e-09  Score=93.23  Aligned_cols=59  Identities=10%  Similarity=-0.055  Sum_probs=49.2

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|++.|..++..+++.+|++++|||.++   +++++.+..+    +.   .+      .|+++++||+|+..
T Consensus        74 iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~------vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        74 IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YK------TPFVVAANKIDRIP  135 (590)
T ss_pred             EECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cC------CCEEEEEECCCccc
Confidence            9999999999999999999999999999997   7777776533    11   12      47889999999964

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.90  E-value=5.2e-09  Score=94.66  Aligned_cols=106  Identities=16%  Similarity=0.033  Sum_probs=72.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCch----------hchhhh-h
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS----------RFLSLT-T  102 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e----------~~~~~~-~  102 (179)
                      ..||+ +|.++||   ++..+.+..   ...+.+| ..+.....+.++ +..+  |||+|..          .|..++ .
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~-~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEID-GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEEC-CCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            57997 9999999   555555321   2233333 234445567778 8887  9999953          333333 3


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..++.+|++++|+|.++..+++.+..| ..+.+   .+      .|+++|+||+||.+
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~------~piIiV~NK~DL~~  575 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLKVM-SMAVD---AG------RALVLVFNKWDLMD  575 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cC------CCEEEEEEchhcCC
Confidence            457899999999999999998887643 33332   22      47889999999964

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.90  E-value=7.1e-09  Score=88.32  Aligned_cols=105  Identities=12%  Similarity=0.079  Sum_probs=67.9

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCccc--CcceeeeeEEEEEecCCCee--eeCCCc--------hhchhhhhhhhcCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHG--KTVGIVFPAISVTYSIGPRY--FRFPLV--------SRFLSLTTGLYRGT  108 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~--~Ti~~~~~~k~v~~~~~~~i--wDt~G~--------e~~~~~~~~~~~~~  108 (179)
                      ||+ +|.++||   ++.++.+.......  +.+..+.....+..+ +..+  |||+|.        +.+......+++.+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG-GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC-CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            465 9999999   55555543221112  222223334556667 7777  999996        45556677789999


Q ss_pred             cEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        109 MGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      |++++|+|.++.-+...  +..|+   ++.  .       .|+++|+||+|+.+.+
T Consensus        80 d~vl~vvD~~~~~~~~d~~i~~~l---~~~--~-------~piilVvNK~D~~~~~  123 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDEEIAKWL---RKS--G-------KPVILVANKIDGKKED  123 (429)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHH---HHh--C-------CCEEEEEECccCCccc
Confidence            99999999987544333  23333   321  2       4788999999986543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00436 era GTP-binding protein Era

Probab=98.90  E-value=8.3e-09  Score=83.02  Aligned_cols=103  Identities=17%  Similarity=0.021  Sum_probs=63.7

Q ss_pred             EEE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCchhch-h-------hhhhhhcC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-S-------LTTGLYRG  107 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-~-------~~~~~~~~  107 (179)
                      +|+ +|.++||   +++.+.+...   +....|..... ......+ +.++  |||+|..... .       ....++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            565 9999999   6666554321   12222322111 1222334 4455  9999975421 1       13456789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +|++++|+|.++..+++  ..++..+..   .+      .|+++|+||+|+..
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~------~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LK------RPVVLTRNKLDNKF  121 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cC------CCEEEEEECeeCCC
Confidence            99999999999987775  444444433   12      57889999999964

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.89  E-value=5.6e-09  Score=94.10  Aligned_cols=106  Identities=13%  Similarity=0.002  Sum_probs=69.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCccc--CcceeeeeEEEEEec-CCCee--eeCCCchhchhhhhhhhcCCcEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHG--KTVGIVFPAISVTYS-IGPRY--FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~--~Ti~~~~~~k~v~~~-~~~~i--wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+|+ +|..++|   ++..+. ..+.....  .|.....+...+..+ .+..+  |||+|++.|..++..+++.+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            345676 9999999   554444 22222222  232222333333333 02444  99999999999999999999999


Q ss_pred             EEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        112 LLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       112 ilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |+|+|.++   +++++.+..+       ....      .|+|+++||+|+.+
T Consensus       323 ILVVDA~dGv~~QT~E~I~~~-------k~~~------iPiIVViNKiDl~~  361 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAINYI-------QAAN------VPIIVAINKIDKAN  361 (742)
T ss_pred             EEEEECcCCCChhhHHHHHHH-------HhcC------ceEEEEEECCCccc
Confidence            99999887   4566554332       1122      57889999999965

>cd04163 Era Era subfamily

Probab=98.86  E-value=1.3e-08  Score=74.08  Aligned_cols=118  Identities=14%  Similarity=-0.020  Sum_probs=64.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLY  105 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~  105 (179)
                      ..+|+ +|..|+|   ++..+.+....   ....+.. .......... +..+  |||+|......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIYTDD-DAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEEEEcC-CeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            46786 9999999   44444432111   1111111 1111112222 3444  99999754332        334568


Q ss_pred             cCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      ..+|++++|+|.++.  +.... .+...+...   .      .|+++|+||+|+........+....++
T Consensus        81 ~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~---~------~~~iiv~nK~Dl~~~~~~~~~~~~~~~  138 (168)
T cd04163          81 KDVDLVLFVVDASEP--IGEGDEFILELLKKS---K------TPVILVLNKIDLVKDKEDLLPLLEKLK  138 (168)
T ss_pred             HhCCEEEEEEECCCc--cCchHHHHHHHHHHh---C------CCEEEEEEchhccccHHHHHHHHHHHH
Confidence            899999999999987  22222 233333332   2      477888999999743333333333333

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.85  E-value=2.8e-08  Score=84.72  Aligned_cols=121  Identities=15%  Similarity=0.109  Sum_probs=75.3

Q ss_pred             EEE-EeCCCCc---eeEeeeccCC--Cccc-CcceeeeeEEEEEecCCCee--eeCCCch----hchhhhhhhhcC---C
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGT--GTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVS----RFLSLTTGLYRG---T  108 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~--~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e----~~~~~~~~~~~~---~  108 (179)
                      .|. +|.++||   +++.+....+  ..|. .|....+.  .+.++.+..+  ||++|..    ....+...|+++   +
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            354 9999999   6655553221  1221 23333322  2333313444  9999963    233455666554   8


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        109 MGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       109 ~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +++++|+|+++.   ++++++..|.+++..+....    ...|+++|+||+||.+    ..+..+++++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L----~~kP~IVV~NK~DL~~----~~e~l~~l~~~  299 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL----LERPQIVVANKMDLPE----AEENLEEFKEK  299 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc----cCCcEEEEEeCCCCcC----CHHHHHHHHHH
Confidence            999999999865   78999999999998765421    0157888999999843    13445555543

>KOG0077|consensus

Probab=98.83  E-value=9.6e-09  Score=76.05  Aligned_cols=119  Identities=14%  Similarity=0.061  Sum_probs=94.6

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ...-|+| +|-.+.|   ++..+.......+.||...+.  ..+.+. |-++  +|.+|+..-+..++.|+..+|++++.
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS--E~l~Ig-~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELSIG-GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh--HHheec-CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            3457898 9999999   777777777778888876543  456777 7777  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQI  170 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~  170 (179)
                      +|..+++-|.+.+.-++.+..... ..      .|+++.|||+|...  ..+++|.+
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~------vp~lilgnKId~p~--a~se~~l~  143 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLAT------VPFLILGNKIDIPY--AASEDELR  143 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhc------CcceeecccccCCC--cccHHHHH
Confidence            999999999998877777654432 22      57777799999865  56665543

>cd01850 CDC_Septin CDC/Septin

Probab=98.82  E-value=1.2e-08  Score=82.54  Aligned_cols=123  Identities=11%  Similarity=0.027  Sum_probs=67.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc-C-CC---------cccCcceeeeeEEEEEecCCCee----eeCCCchhc-----
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL-G-TG---------THGKTVGIVFPAISVTYSIGPRY----FRFPLVSRF-----   97 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~-~-~~---------~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~-----   97 (179)
                      +.|+|+ +|++|+|   ++..+... . ..         ...+|++.+.....+..+ |..+    |||+|-..+     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~-g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEEN-GVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEEC-CEEEEEEEEecCCccccccchh
Confidence            468997 9999999   33333311 1 11         246677766666666666 6544    999994222     


Q ss_pred             ---------------------hhhhhhhhcC--CcEEEEEEeCCChhhHHHHHHH-HHHHHHHhCCccCccccceEEEEe
Q psy15036         98 ---------------------LSLTTGLYRG--TMGFLLIFDVTNENSFKDVEKW-LLQIKVMDGALFTHFELQIVFMRG  153 (179)
Q Consensus        98 ---------------------~~~~~~~~~~--~~~vilvyDit~~~Sf~~l~~w-~~~i~~~~~~~~~~~~~~~iilvG  153 (179)
                                           ...+..++++  +|+++++.+.+..    .+..| ++.++.... .      .|+++|+
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~----~l~~~D~~~lk~l~~-~------v~vi~Vi  150 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH----GLKPLDIEFMKRLSK-R------VNIIPVI  150 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC----CCCHHHHHHHHHHhc-c------CCEEEEE
Confidence                                 1122234554  5555555555432    22333 333444433 3      5788999


Q ss_pred             eCCCcCC--CCCCCHHHHHHHHhhh
Q psy15036        154 CLELLQR--CREVVTPDQIMFGSTQ  176 (179)
Q Consensus       154 nK~Dl~~--~r~Vs~~e~~~~a~~~  176 (179)
                      ||+|+..  ++....+...+.++.+
T Consensus       151 nK~D~l~~~e~~~~k~~i~~~l~~~  175 (276)
T cd01850         151 AKADTLTPEELKEFKQRIMEDIEEH  175 (276)
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHc
Confidence            9999844  2333344444444443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.81  E-value=1.3e-08  Score=90.03  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             EEE-EeCCCCc---eeEeeeccCC-----CcccCcceeeeeEEEE----------------EecCCCeeeeCCCchhchh
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGT-----GTHGKTVGIVFPAISV----------------TYSIGPRYFRFPLVSRFLS   99 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~-----~~~~~Ti~~~~~~k~v----------------~~~~~~~iwDt~G~e~~~~   99 (179)
                      .|. +|..++|   ++..+.+.+.     ..+.+++|..+.....                .+. +-.+|||+|++.|..
T Consensus         8 ~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~iDTPG~e~f~~   86 (586)
T PRK04004          8 IVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP-GLLFIDTPGHEAFTN   86 (586)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC-CEEEEECCChHHHHH
Confidence            355 9999999   5555543322     2233456544321110                111 112399999999999


Q ss_pred             hhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        100 LTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       100 ~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      ++...++.+|++++|+|.++   +++++.+..+    ..   .+      .|+++++||+|+.
T Consensus        87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---~~------vpiIvviNK~D~~  136 (586)
T PRK04004         87 LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---RK------TPFVVAANKIDRI  136 (586)
T ss_pred             HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---cC------CCEEEEEECcCCc
Confidence            99989999999999999998   7888877543    11   22      5688999999985

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.80  E-value=2.4e-08  Score=90.43  Aligned_cols=106  Identities=11%  Similarity=0.002  Sum_probs=68.4

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCccee--eeeEEEEEecCCCee--eeCCCchh--------chhhhhhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGI--VFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~--~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~~~  106 (179)
                      ..+|+ +|.++||   +++++.+.......++.|.  +........+ +..+  |||+|.+.        +......+++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA-GTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC-CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            46786 9999999   6666654322222233333  3333444556 6666  99999763        3344566789


Q ss_pred             CCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .+|++++|+|.++.  +... ..|.+.+++   .+      .|+++|+||+|+..
T Consensus       354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~------~pvIlV~NK~D~~~  397 (712)
T PRK09518        354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AG------KPVVLAVNKIDDQA  397 (712)
T ss_pred             hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cC------CCEEEEEECccccc
Confidence            99999999999863  2233 245555543   22      58889999999854

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.80  E-value=1.8e-08  Score=86.06  Aligned_cols=89  Identities=7%  Similarity=-0.051  Sum_probs=55.0

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEee
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      ..+..+ +..+  |||+|+++|.......++.+|++++|+|.+++.++.... .++..+. ....       +++++++|
T Consensus        77 ~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~-------~~iivviN  147 (425)
T PRK12317         77 KKFETD-KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI-------NQLIVAIN  147 (425)
T ss_pred             EEEecC-CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC-------CeEEEEEE
Confidence            445555 6666  999999988654445578999999999998742332222 2222222 2222       47888999


Q ss_pred             CCCcCCCCC----CCHHHHHHHHhh
Q psy15036        155 LELLQRCRE----VVTPDQIMFGST  175 (179)
Q Consensus       155 K~Dl~~~r~----Vs~~e~~~~a~~  175 (179)
                      |+|+.+...    ...++..++.+.
T Consensus       148 K~Dl~~~~~~~~~~~~~~i~~~l~~  172 (425)
T PRK12317        148 KMDAVNYDEKRYEEVKEEVSKLLKM  172 (425)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHh
Confidence            999964211    223455555543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.78  E-value=2.2e-08  Score=78.55  Aligned_cols=73  Identities=12%  Similarity=-0.089  Sum_probs=55.2

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC-CCCCCCHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ-RCREVVTP  167 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~-~~r~Vs~~  167 (179)
                      |||+|++.|......+++.+|++++|+|+++..+.+....|. .+.   ...      .|+++|+||+|+. .++.++.+
T Consensus        78 iDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~---~~~------~p~ilviNKiD~~~~e~~~~~~  147 (222)
T cd01885          78 IDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QAL---KER------VKPVLVINKIDRLILELKLSPE  147 (222)
T ss_pred             ECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHH---HcC------CCEEEEEECCCcchhhhcCCHH
Confidence            999999999999999999999999999999876665432222 222   222      4678899999985 56677776


Q ss_pred             HHHH
Q psy15036        168 DQIM  171 (179)
Q Consensus       168 e~~~  171 (179)
                      ++..
T Consensus       148 ~~~~  151 (222)
T cd01885         148 EAYQ  151 (222)
T ss_pred             HHHH
Confidence            6544

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.78  E-value=2.9e-08  Score=78.52  Aligned_cols=72  Identities=7%  Similarity=-0.042  Sum_probs=54.4

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  |||+|+..|......+++.+|++++|+|.++..+. ....|+..+.+.   .      .|+++++||
T Consensus        57 ~~~~~~-~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~------~P~iivvNK  125 (237)
T cd04168          57 ASFQWE-DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---N------IPTIIFVNK  125 (237)
T ss_pred             EEEEEC-CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---C------CCEEEEEEC
Confidence            344455 5566  99999999998888999999999999999986543 344555555442   2      467789999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+..
T Consensus       126 ~D~~~  130 (237)
T cd04168         126 IDRAG  130 (237)
T ss_pred             ccccC
Confidence            99874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.77  E-value=3e-08  Score=88.01  Aligned_cols=62  Identities=13%  Similarity=0.005  Sum_probs=50.4

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|++.|......+++.+|++|+|+|.++..+.+....|.....    .+      .|+++|+||+|+.+
T Consensus        79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~------lpiIvViNKiDl~~  140 (600)
T PRK05433         79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----ND------LEIIPVLNKIDLPA  140 (600)
T ss_pred             EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CC------CCEEEEEECCCCCc
Confidence            9999999999888999999999999999998766666666654321    22      46888999999965

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.77  E-value=4.6e-08  Score=77.12  Aligned_cols=106  Identities=12%  Similarity=0.107  Sum_probs=63.0

Q ss_pred             EEE-EeCCCCc-------eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh-----hhhhhhcCCc
Q psy15036         45 GTQ-LGRRGIP-------LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS-----LTTGLYRGTM  109 (179)
Q Consensus        45 Kiv-lG~~gvG-------~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-----~~~~~~~~~~  109 (179)
                      ||| +|.+++|       ++.+..........+|+.++.  ..+....+-.+  ||++||..+..     .....|+++.
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~--~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK--SHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE--EEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE--EEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            787 9999999       232333322334457776553  23433314445  99999976643     4577899999


Q ss_pred             EEEEEEeCCChhhHHHHH---HHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        110 GFLLIFDVTNENSFKDVE---KWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~---~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      ++|+|+|+.+++-.+.+.   ..++.+.+..+.       ..+.+.-+|.|+.
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~-------~~v~vfiHK~D~l  124 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPN-------IKVFVFIHKMDLL  124 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT--------EEEEEEE-CCCS
T ss_pred             EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCC-------CeEEEEEeecccC
Confidence            999999999665555544   455555555554       5677778999984

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.74  E-value=8.9e-08  Score=87.16  Aligned_cols=120  Identities=9%  Similarity=0.039  Sum_probs=76.6

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeee--eEEEEEecCCCee--eeCCCchhchhh----------hhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVF--PAISVTYSIGPRY--FRFPLVSRFLSL----------TTGL  104 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~--~~k~v~~~~~~~i--wDt~G~e~~~~~----------~~~~  104 (179)
                      .+||. +|+++||   +++.+.+... ...+..|.+.  ....+..+ +..+  ||++|..++...          ...|
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~-~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcC-ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            46786 9999999   6666653321 2233333333  33344555 5566  999999877532          2334


Q ss_pred             h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        105 Y--RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       105 ~--~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +  ..+|++++|+|.++.+.-   ..|..++.+.   .      .|+++|.||+|+.+++.+. .+.++++++.+
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---g------iPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG  142 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---G------IPCIVALNMLDIAEKQNIR-IDIDALSARLG  142 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---C------CCEEEEEEchhhhhccCcH-HHHHHHHHHhC
Confidence            3  379999999999886542   3455555543   2      4788999999997766664 45566666544

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.74  E-value=1e-07  Score=81.50  Aligned_cols=108  Identities=12%  Similarity=-0.011  Sum_probs=67.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchh----------chhhh-h
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR----------FLSLT-T  102 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~----------~~~~~-~  102 (179)
                      ..+||+ +|..++|   ++..+.+..  .....+....+.....+..+ +..+  |||+|..+          |...+ .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD-GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC-CeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            368997 9999999   554444221  11112222223333445566 7666  99999633          22222 2


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .+++.+|++|+|+|.++..+..... +...+.+.   .      .|+++|+||+|+.+
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~------~~~ivv~NK~Dl~~  298 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR-IAGLALEA---G------RALVIVVNKWDLVD  298 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---C------CcEEEEEECccCCC
Confidence            3688999999999999988877653 33333322   2      46788899999964

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.73  E-value=1.3e-07  Score=74.67  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             EEE-EeCCCCc---eeEeeeccCC--Cccc-CcceeeeeEEEEEecCCCee--eeCCCchhch-------hhhhhhhcCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGT--GTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SLTTGLYRGT  108 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~--~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~~~~~~~~~  108 (179)
                      ||+ +|.+++|   +++.+.+...  ..+. +|..  .....+.++ +..+  ||++|+.+..       .....+++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~--~~~g~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT--CVPGVLEYK-GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc--ceEEEEEEC-CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            576 9999999   6666664321  2222 2332  223455667 7777  9999985432       1234578999


Q ss_pred             cEEEEEEeCCChh-hHHHHHHHH
Q psy15036        109 MGFLLIFDVTNEN-SFKDVEKWL  130 (179)
Q Consensus       109 ~~vilvyDit~~~-Sf~~l~~w~  130 (179)
                      |++++|+|.++++ ..+.+...+
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l  101 (233)
T cd01896          79 DLILMVLDATKPEGHREILEREL  101 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHH
Confidence            9999999998865 444444443

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.71  E-value=3.4e-08  Score=72.20  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=64.5

Q ss_pred             EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc----------hhchhhhhhhhcC--
Q psy15036         46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV----------SRFLSLTTGLYRG--  107 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~----------e~~~~~~~~~~~~--  107 (179)
                      |+ +|+.|+|   +++.+. ..+.....++.+.+.....+..+ +... ||++|.          +.+..+...|+..  
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            65 9999999   565555 34455556666655544455555 4333 999983          3455555666664  


Q ss_pred             -CcEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        108 -TMGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       108 -~~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                       .+++++++|.++..+  ...+..|+...      .      .|+++|+||+|+.
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~------~~vi~v~nK~D~~  123 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEEL------G------IPFLVVLTKADKL  123 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHHc------C------CCEEEEEEchhcC
Confidence             467888999887632  23344555432      1      4778889999984

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04169 RF3 RF3 subfamily

Probab=98.70  E-value=1e-07  Score=76.77  Aligned_cols=71  Identities=8%  Similarity=-0.054  Sum_probs=50.9

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+..+ +..+  |||+|+++|.......++.+|++|+|+|.++... .....++.....   .+      .|+++++||+
T Consensus        65 ~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~------~P~iivvNK~  133 (267)
T cd04169          65 QFEYR-DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RG------IPIITFINKL  133 (267)
T ss_pred             EEeeC-CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cC------CCEEEEEECC
Confidence            45555 6666  9999999998877788999999999999987533 222344433322   12      4678889999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+..
T Consensus       134 D~~~  137 (267)
T cd04169         134 DREG  137 (267)
T ss_pred             ccCC
Confidence            9865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.69  E-value=2.4e-07  Score=71.72  Aligned_cols=73  Identities=8%  Similarity=-0.037  Sum_probs=48.6

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  |||+|+++|.......++.+|++++|+|.++... .........+.. ...       +++|+|.||
T Consensus        70 ~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~-~~~-------~~iIvviNK  139 (208)
T cd04166          70 RYFSTP-KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSL-LGI-------RHVVVAVNK  139 (208)
T ss_pred             eEEecC-CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHH-cCC-------CcEEEEEEc
Confidence            344556 6666  9999999987656667899999999999987522 111222222222 222       467788999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+.+
T Consensus       140 ~D~~~  144 (208)
T cd04166         140 MDLVD  144 (208)
T ss_pred             hhccc
Confidence            99864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.65  E-value=1e-07  Score=82.56  Aligned_cols=117  Identities=12%  Similarity=0.044  Sum_probs=70.3

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCC--Ccc-cCcceeeeeEEEEEecCCCee--eeCCCch----hchhhhhh---hhcC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGT--GTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVS----RFLSLTTG---LYRG  107 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e----~~~~~~~~---~~~~  107 (179)
                      .+|. ||.+++|   +++.+....+  ..| .+|+....  -.+.++ +..+  ||++|.-    ....+...   ++..
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~l--Gvv~~~-~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNL--GVVQAG-DTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceE--EEEEEC-CeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            4465 9999999   6655553211  122 23433222  345566 6666  9999952    22223222   3567


Q ss_pred             CcEEEEEEeCCC----hhhHHHHHHHHHHHHHHhCCc-----cCccccceEEEEeeCCCcCCCCC
Q psy15036        108 TMGFLLIFDVTN----ENSFKDVEKWLLQIKVMDGAL-----FTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus       108 ~~~vilvyDit~----~~Sf~~l~~w~~~i~~~~~~~-----~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      ++++|+|+|.++    ++.++.+..|..++..+....     .......|+++|+||+|+.+.+.
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e  301 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE  301 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence            899999999986    457777777887776654310     00000147788999999965443

>PRK13351 elongation factor G; Reviewed

Probab=98.64  E-value=1.1e-07  Score=85.89  Aligned_cols=105  Identities=13%  Similarity=0.032  Sum_probs=72.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeecc--------------CCC-------cccCcceeeeeEEEEEecCCCee--eeCCCch
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYL--------------GTG-------THGKTVGIVFPAISVTYSIGPRY--FRFPLVS   95 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~--------------~~~-------~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e   95 (179)
                      ..+|. +|..++|   ++.++...              ...       ++..|+....  ..+... +..+  |||+|+.
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~~~~~-~~~i~liDtPG~~   84 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TSCDWD-NHRINLIDTPGHI   84 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EEEEEC-CEEEEEEECCCcH
Confidence            56786 9999999   33333210              000       2334444332  244445 5556  9999999


Q ss_pred             hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +|......+++.+|++++|+|.++..++.....|. .+.+.   +      .|+++++||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~---~------~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY---G------IPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc---C------CCEEEEEECCCCCC
Confidence            99988899999999999999999988877666663 23322   2      56788999999875

>KOG3886|consensus

Probab=98.63  E-value=9.2e-08  Score=74.63  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=78.7

Q ss_pred             eeEEE-EeCCCCc--eeEeee-----ccCCCcccCcceeeeeEEEEEecCCCee---eeCCCchhch-----hhhhhhhc
Q psy15036         43 NFGTQ-LGRRGIP--LLKHLK-----YLGTGTHGKTVGIVFPAISVTYSIGPRY---FRFPLVSRFL-----SLTTGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG--~~~~~~-----~~~~~~~~~Ti~~~~~~k~v~~~~~~~i---wDt~G~e~~~-----~~~~~~~~  106 (179)
                      .-||+ +|.+|.|  .++-+.     ........+||.++..  .+.+- |.-+   ||++||+.|-     ......++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs--h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~   80 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS--HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFR   80 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh--hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence            45887 9999999  333332     2224455677776654  33444 5444   9999999652     35567789


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHH---HHHHHhCCccCccccceEEEEeeCCCcC--CCCCCCHHHHHH
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLL---QIKVMDGALFTHFELQIVFMRGCLELLQ--RCREVVTPDQIM  171 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~---~i~~~~~~~~~~~~~~~iilvGnK~Dl~--~~r~Vs~~e~~~  171 (179)
                      +.+++|.|||+...+--..+..+.+   .+.++.+.       ..++..-+|.||.  ++|++...+-++
T Consensus        81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-------AkiF~l~hKmDLv~~d~r~~if~~r~~  143 (295)
T KOG3886|consen   81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-------AKIFCLLHKMDLVQEDARELIFQRRKE  143 (295)
T ss_pred             eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-------ceEEEEEeechhcccchHHHHHHHHHH
Confidence            9999999999998876666655544   44455544       4677778999994  445554444443

>PRK10218 GTP-binding protein; Provisional

Probab=98.63  E-value=1.7e-07  Score=83.21  Aligned_cols=109  Identities=11%  Similarity=-0.107  Sum_probs=71.1

Q ss_pred             eeEEE-EeCCCCc---eeEeee---ccCCCc------------ccCcceeeeeEEEEEecC-CCee--eeCCCchhchhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK---YLGTGT------------HGKTVGIVFPAISVTYSI-GPRY--FRFPLVSRFLSL  100 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~---~~~~~~------------~~~Ti~~~~~~k~v~~~~-~~~i--wDt~G~e~~~~~  100 (179)
                      .-+|. +|..++|   ++..+.   +.+...            ...+.|+++..+...+.. +..+  |||+|+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            45676 9999999   333333   222221            234566666555554431 4444  999999999999


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ...+++.+|++|+|+|.++.... ....++..+...   .      .|++++.||+|+.+.
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~---g------ip~IVviNKiD~~~a  135 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY---G------LKPIVVINKVDRPGA  135 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc---C------CCEEEEEECcCCCCC
Confidence            99999999999999999875322 233344444332   2      355778999998653

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.62  E-value=1.3e-07  Score=71.83  Aligned_cols=108  Identities=17%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             EE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEe---cCCCee--eeCCCchhchhhhhh---hhcCCcEEEE
Q psy15036         46 TQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTY---SIGPRY--FRFPLVSRFLSLTTG---LYRGTMGFLL  113 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~---~~~~~i--wDt~G~e~~~~~~~~---~~~~~~~vil  113 (179)
                      |+ +|.+|+|   ++..+...   ...+|...--....+.+   . +..+  .|++|+++.+.....   +...+.|+|+
T Consensus         6 vlL~Gps~SGKTaLf~~L~~~---~~~~T~tS~e~n~~~~~~~~~-~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    6 VLLVGPSGSGKTALFSQLVNG---KTVPTVTSMENNIAYNVNNSK-GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             EEEE-STTSSHHHHHHHHHHS---S---B---SSEEEECCGSSTC-GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             EEEEcCCCCCHHHHHHHHhcC---CcCCeeccccCCceEEeecCC-CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            56 9999999   55555532   22232211101112222   2 3444  899999998863333   5788999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        114 IFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       114 vyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.|.+. ...+..+-.++..+.......   ...+|+++++||.|+..
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~---~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSDTEVQ---KNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHCC---TT--EEEEEEE-TTSTT
T ss_pred             EEeCccchhhHHHHHHHHHHHHHhhhhc---cCCCCEEEEEeCccccc
Confidence            999873 556677766666654332210   01289999999999965

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00089 era GTPase Era; Reviewed

Probab=98.62  E-value=1.7e-07  Score=75.97  Aligned_cols=117  Identities=14%  Similarity=0.036  Sum_probs=63.0

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCc---ccCcceeeeeEEEEEecCCCee--eeCCCchhch--------hhhhhhhcC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGT---HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL--------SLTTGLYRG  107 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~---~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~--------~~~~~~~~~  107 (179)
                      .|. +|..|+|   +++.+.+.....   ...|..... ...+..+ +..+  |||+|.....        ......+.+
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~   84 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-RGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD   84 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-EEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence            354 9999999   555555332111   111211111 1122223 4455  9999974432        233446789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      +|++++|+|.++.  +.....++.....  ...      .|+++|+||+|+...+....+....++
T Consensus        85 ~D~il~vvd~~~~--~~~~~~~i~~~l~--~~~------~pvilVlNKiDl~~~~~~l~~~~~~l~  140 (292)
T PRK00089         85 VDLVLFVVDADEK--IGPGDEFILEKLK--KVK------TPVILVLNKIDLVKDKEELLPLLEELS  140 (292)
T ss_pred             CCEEEEEEeCCCC--CChhHHHHHHHHh--hcC------CCEEEEEECCcCCCCHHHHHHHHHHHH
Confidence            9999999999882  2222223222222  112      478899999999743333333444443

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.61  E-value=2.7e-07  Score=82.24  Aligned_cols=99  Identities=14%  Similarity=0.112  Sum_probs=65.4

Q ss_pred             EeCCCCc---eeEeeec----cCCCcc--cCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         48 LGRRGIP---LLKHLKY----LGTGTH--GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        48 lG~~gvG---~~~~~~~----~~~~~~--~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      +|..++|   ++..+.+    .+.++.  ..|+...+.  .+...++..+  ||++|+++|.......+.++|++++|+|
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~--~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVd   83 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA--YWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVA   83 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE--EEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEE
Confidence            9999999   5555553    223332  445544332  3333315555  9999999997666667899999999999


Q ss_pred             CCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .++   +++.+.+.    .+. ....       +++++|.||+|+.+
T Consensus        84 a~eg~~~qT~ehl~----il~-~lgi-------~~iIVVlNKiDlv~  118 (614)
T PRK10512         84 CDDGVMAQTREHLA----ILQ-LTGN-------PMLTVALTKADRVD  118 (614)
T ss_pred             CCCCCcHHHHHHHH----HHH-HcCC-------CeEEEEEECCccCC
Confidence            887   56665543    122 2222       45678999999965

>cd00880 Era_like Era (E

Probab=98.60  E-value=1.5e-07  Score=67.52  Aligned_cols=103  Identities=13%  Similarity=-0.047  Sum_probs=63.2

Q ss_pred             EeCCCCc---eeEeeeccCCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchhh-------hhhhhcCCcEEE
Q psy15036         48 LGRRGIP---LLKHLKYLGTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL-------TTGLYRGTMGFL  112 (179)
Q Consensus        48 lG~~gvG---~~~~~~~~~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~-------~~~~~~~~~~vi  112 (179)
                      +|..|+|   +++.+......   ...++. ............+..+  ||++|...+...       ...+++.+|+++
T Consensus         2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTT-TDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             cCCCCCCHHHHHHHHhCccccccCCCCCcE-ECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            7999999   44444432111   122221 1222233333212233  999998776533       344789999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      +|+|.++..+..... |......   ..      .|+++|.||+|+...
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~~~---~~------~~~ivv~nK~D~~~~  119 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELLRE---RG------KPVLLVLNKIDLLPE  119 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHHHh---cC------CeEEEEEEccccCCh
Confidence            999999988877765 3333332   22      578899999998653

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.59  E-value=2.2e-07  Score=82.39  Aligned_cols=73  Identities=14%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+..+ +..+  |||+|++.|......+++.+|++++|+|.++. .+.....|+..+...   +      .|+++|.||+
T Consensus        58 ~v~~~-~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~------ip~IVviNKi  126 (594)
T TIGR01394        58 AIRYN-GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---G------LKPIVVINKI  126 (594)
T ss_pred             EEEEC-CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---C------CCEEEEEECC
Confidence            44555 6666  99999999998888999999999999998763 455566777776653   2      4567889999


Q ss_pred             CcCCCC
Q psy15036        157 LLQRCR  162 (179)
Q Consensus       157 Dl~~~r  162 (179)
                      |+.+.+
T Consensus       127 D~~~a~  132 (594)
T TIGR01394       127 DRPSAR  132 (594)
T ss_pred             CCCCcC
Confidence            996544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.53  E-value=6.5e-07  Score=75.76  Aligned_cols=120  Identities=9%  Similarity=-0.011  Sum_probs=72.8

Q ss_pred             EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCCCee--eeCCCchhch----hhhh---hhhcCCcEEE
Q psy15036         48 LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----SLTT---GLYRGTMGFL  112 (179)
Q Consensus        48 lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----~~~~---~~~~~~~~vi  112 (179)
                      +|-+++|   +++.+....  ...+ ..|......  .+.+.++..+  +|++|..+-.    .+..   ..+..+++++
T Consensus       165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL  242 (390)
T PRK12298        165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLL  242 (390)
T ss_pred             EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEE
Confidence            9999999   555554321  1222 233333332  3444413445  9999974311    1222   2467899999


Q ss_pred             EEEeCC---ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        113 LIFDVT---NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       113 lvyDit---~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      +|+|++   ++++++++..|++++..+...-    ...|++||.||+|+..+..+ .+..+++++
T Consensus       243 ~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L----~~kP~IlVlNKiDl~~~~el-~~~l~~l~~  302 (390)
T PRK12298        243 HLIDIAPIDGSDPVENARIIINELEKYSPKL----AEKPRWLVFNKIDLLDEEEA-EERAKAIVE  302 (390)
T ss_pred             EEeccCcccccChHHHHHHHHHHHHhhhhhh----cCCCEEEEEeCCccCChHHH-HHHHHHHHH
Confidence            999998   6788999999999988765311    00467888999999654333 233444444

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.48  E-value=1.1e-06  Score=74.98  Aligned_cols=74  Identities=8%  Similarity=-0.031  Sum_probs=45.7

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      |||+|+++|......-...+|++++|+|.++    .++++.+..|    .. ...       +++++|+||+|+.++...
T Consensus        90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l----~~-~~i-------~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL----DI-IGI-------KNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH----HH-cCC-------CcEEEEEEeeccccchhH
Confidence            9999999885433333345699999999995    4455544332    21 111       467888999999653221


Q ss_pred             --CHHHHHHHHh
Q psy15036        165 --VTPDQIMFGS  174 (179)
Q Consensus       165 --s~~e~~~~a~  174 (179)
                        ..++.+++++
T Consensus       158 ~~~~~~i~~~l~  169 (411)
T PRK04000        158 LENYEQIKEFVK  169 (411)
T ss_pred             HHHHHHHHHHhc
Confidence              2344555543

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.47  E-value=5.2e-07  Score=69.54  Aligned_cols=60  Identities=10%  Similarity=0.056  Sum_probs=44.7

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE----NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~----~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|+++|..........+|++++|+|.+++    ++++.+..|    .. ...       +|+++|.||.|+.+
T Consensus        88 iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~-------~~iiivvNK~Dl~~  151 (203)
T cd01888          88 VDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGL-------KHIIIVQNKIDLVK  151 (203)
T ss_pred             EECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCC-------CcEEEEEEchhccC
Confidence            99999999877767777888999999999873    455554443    11 111       46788999999965

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.43  E-value=1.6e-06  Score=69.59  Aligned_cols=72  Identities=11%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  |||+|+..|.......++.+|++++|+|.++.........|. .+...   .      .|.+++.||
T Consensus        57 ~~~~~~-~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~---~------~p~iivvNK  125 (268)
T cd04170          57 APLEWK-GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA---G------IPRIIFINK  125 (268)
T ss_pred             EEEEEC-CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---C------CCEEEEEEC
Confidence            344455 5555  999999998888888999999999999999876655444443 22221   2      467778999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+.+
T Consensus       126 ~D~~~  130 (268)
T cd04170         126 MDRER  130 (268)
T ss_pred             CccCC
Confidence            99875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.43  E-value=6.8e-07  Score=68.60  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             eEEE-EeCCCCc---eeEeeeccC-CCcccCccee-eee--EEEEEecCCCee--eeCCCchhchhhhhhh-----hcCC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGI-VFP--AISVTYSIGPRY--FRFPLVSRFLSLTTGL-----YRGT  108 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~-~~~--~k~v~~~~~~~i--wDt~G~e~~~~~~~~~-----~~~~  108 (179)
                      +||+ +|++|+|   +++.+.+.. .....++.+. ...  ...+.......+  ||++|..........|     +.++
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~   81 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY   81 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence            6887 9999999   555554321 1112222221 111  111221101123  9999975433222223     6778


Q ss_pred             cEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        109 MGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      |+++++-|    ++|... ..|++.+++.  .       .++++|+||+|+.
T Consensus        82 d~~l~v~~----~~~~~~d~~~~~~l~~~--~-------~~~ilV~nK~D~~  120 (197)
T cd04104          82 DFFIIISS----TRFSSNDVKLAKAIQCM--G-------KKFYFVRTKVDRD  120 (197)
T ss_pred             CEEEEEeC----CCCCHHHHHHHHHHHHh--C-------CCEEEEEecccch
Confidence            98888743    345555 4666766654  2       3678999999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.42  E-value=5.7e-07  Score=76.51  Aligned_cols=60  Identities=10%  Similarity=0.036  Sum_probs=43.6

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ||++|+++|..........+|++++|+|.++    .++.+.+.    .+.. ...       +++++|.||+|+.+
T Consensus        85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~-~gi-------~~iIVvvNK~Dl~~  148 (406)
T TIGR03680        85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEI-IGI-------KNIVIVQNKIDLVS  148 (406)
T ss_pred             EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHH-cCC-------CeEEEEEEccccCC
Confidence            9999999998777777778999999999985    33444433    2222 212       46778899999965

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.42  E-value=8.3e-07  Score=77.80  Aligned_cols=71  Identities=11%  Similarity=-0.020  Sum_probs=51.3

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+..+ +..+  |||+|++.|......+++.+|++|+|+|.++.-.- ....++...+.   .+      .|++++.||+
T Consensus        73 ~~~~~-~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~------iPiiv~iNK~  141 (526)
T PRK00741         73 QFPYR-DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RD------TPIFTFINKL  141 (526)
T ss_pred             EEEEC-CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cC------CCEEEEEECC
Confidence            44555 5556  99999999988778889999999999999875321 23344433332   22      5788899999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+..
T Consensus       142 D~~~  145 (526)
T PRK00741        142 DRDG  145 (526)
T ss_pred             cccc
Confidence            9865

>cd00066 G-alpha G protein alpha subunit

Probab=98.40  E-value=1e-06  Score=72.59  Aligned_cols=100  Identities=9%  Similarity=0.017  Sum_probs=65.0

Q ss_pred             eeEeeeccCCCcccCcceeee---------eEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---
Q psy15036         55 LLKHLKYLGTGTHGKTVGIVF---------PAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---  120 (179)
Q Consensus        55 ~~~~~~~~~~~~~~~Ti~~~~---------~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---  120 (179)
                      ++.++...+.++|.||...-+         ....+.++ +..+  ||++||...+..+..||.+++++|+|.|+++-   
T Consensus       122 f~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~-~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~  200 (317)
T cd00066         122 FLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIK-NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQV  200 (317)
T ss_pred             HHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEec-ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccc
Confidence            334444445566666543211         12345556 5555  99999999999999999999999999999874   


Q ss_pred             -------hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        121 -------NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       121 -------~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                             +.++.....++.+.....     ....|++|++||.|+-.
T Consensus       201 ~~e~~~~nrl~esl~~f~~i~~~~~-----~~~~pill~~NK~D~f~  242 (317)
T cd00066         201 LFEDESTNRMQESLNLFDSICNSRW-----FANTSIILFLNKKDLFE  242 (317)
T ss_pred             cccCCcchHHHHHHHHHHHHHhCcc-----ccCCCEEEEccChHHHH
Confidence                   344444444444433211     11268889999999743

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.38  E-value=2.4e-06  Score=72.40  Aligned_cols=79  Identities=11%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      +..+  |||+|+++|......-...+|++++|+|.+.   +++.+.+    ..+... .-       |++|++.||+|+.
T Consensus        74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l----~~~~~~-gi-------~~iIvvvNK~Dl~  141 (394)
T TIGR00485        74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI----LLARQV-GV-------PYIVVFLNKCDMV  141 (394)
T ss_pred             CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHHc-CC-------CEEEEEEEecccC
Confidence            4445  9999999986444334556799999999987   3333322    223322 11       5666789999986


Q ss_pred             CCCCCC---HHHHHHHHhh
Q psy15036        160 RCREVV---TPDQIMFGST  175 (179)
Q Consensus       160 ~~r~Vs---~~e~~~~a~~  175 (179)
                      +..+..   .+|.+++.++
T Consensus       142 ~~~~~~~~~~~~i~~~l~~  160 (394)
T TIGR00485       142 DDEELLELVEMEVRELLSE  160 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            432211   2355555544

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.36  E-value=2.5e-06  Score=74.86  Aligned_cols=71  Identities=11%  Similarity=-0.015  Sum_probs=50.3

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+..+ +..+  |||+|++.|.......++.+|++|+|+|.++. -......+++..+.   .+      .|+++++||+
T Consensus        74 ~~~~~-~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~---~~------~PiivviNKi  142 (527)
T TIGR00503        74 QFPYR-DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTRL---RD------TPIFTFMNKL  142 (527)
T ss_pred             EEeeC-CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHh---cC------CCEEEEEECc
Confidence            34445 5555  99999999988777789999999999998863 11223444443332   22      5788899999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+..
T Consensus       143 D~~~  146 (527)
T TIGR00503       143 DRDI  146 (527)
T ss_pred             cccC
Confidence            9864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>smart00275 G_alpha G protein alpha subunit

Probab=98.36  E-value=2.4e-06  Score=71.15  Aligned_cols=84  Identities=10%  Similarity=-0.019  Sum_probs=59.4

Q ss_pred             CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHH
Q psy15036         69 KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE----------NSFKDVEKWLLQIKVM  136 (179)
Q Consensus        69 ~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~----------~Sf~~l~~w~~~i~~~  136 (179)
                      ||.|+.  ...+.++ +..+  ||.+||...+..|..||.+++++|+|.|+++-          +.++.....++.+...
T Consensus       170 ~T~Gi~--~~~f~~~-~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~  246 (342)
T smart00275      170 PTTGIQ--ETAFIVK-KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS  246 (342)
T ss_pred             CccceE--EEEEEEC-CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence            355543  3456666 6666  99999999999999999999999999999973          3455554444444432


Q ss_pred             hCCccCccccceEEEEeeCCCcCC
Q psy15036        137 DGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       137 ~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..     ....|++|+.||.|+-.
T Consensus       247 ~~-----~~~~piil~~NK~D~~~  265 (342)
T smart00275      247 RW-----FANTSIILFLNKIDLFE  265 (342)
T ss_pred             cc-----ccCCcEEEEEecHHhHH
Confidence            11     12268888899999853

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.28  E-value=2.8e-06  Score=66.28  Aligned_cols=74  Identities=12%  Similarity=0.002  Sum_probs=48.9

Q ss_pred             EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhh---H----HHHHHHHHHHHHHhCCccCccccc
Q psy15036         77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENS---F----KDVEKWLLQIKVMDGALFTHFELQ  147 (179)
Q Consensus        77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~S---f----~~l~~w~~~i~~~~~~~~~~~~~~  147 (179)
                      ...+... +..+  |||+|+..|........+.+|++|+|+|.++.+.   |    +....|. ... ....       +
T Consensus        69 ~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-------~  138 (219)
T cd01883          69 LAKFETE-KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LAR-TLGV-------K  138 (219)
T ss_pred             eEEEeeC-CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHH-HcCC-------C
Confidence            3455566 6666  9999998887655566788999999999988421   1    1122222 222 2222       4


Q ss_pred             eEEEEeeCCCcCC
Q psy15036        148 IVFMRGCLELLQR  160 (179)
Q Consensus       148 ~iilvGnK~Dl~~  160 (179)
                      |++++.||.|+..
T Consensus       139 ~iiivvNK~Dl~~  151 (219)
T cd01883         139 QLIVAVNKMDDVT  151 (219)
T ss_pred             eEEEEEEcccccc
Confidence            7788899999963

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.23  E-value=1.5e-06  Score=64.54  Aligned_cols=118  Identities=8%  Similarity=-0.032  Sum_probs=67.8

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCC-cccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhh--cCC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTG-THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLY--RGT  108 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~-~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~--~~~  108 (179)
                      ++|. +|.++||   ++..+.+.... ..-|-..++.....+.++ +..+  .|++|--...      .+...|+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~-~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG-DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET-TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec-CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            4786 9999999   66666543211 111222234555677778 7777  9999953332      2344454  589


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      |++|.|.|.++.+.=   -....++.+.   .      .|+++|.||+|+..++.+..+ ...+++.
T Consensus        80 D~ii~VvDa~~l~r~---l~l~~ql~e~---g------~P~vvvlN~~D~a~~~g~~id-~~~Ls~~  133 (156)
T PF02421_consen   80 DLIIVVVDATNLERN---LYLTLQLLEL---G------IPVVVVLNKMDEAERKGIEID-AEKLSER  133 (156)
T ss_dssp             SEEEEEEEGGGHHHH---HHHHHHHHHT---T------SSEEEEEETHHHHHHTTEEE--HHHHHHH
T ss_pred             CEEEEECCCCCHHHH---HHHHHHHHHc---C------CCEEEEEeCHHHHHHcCCEEC-HHHHHHH
Confidence            999999999874322   2333444433   2      478889999999765554432 4444443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.22  E-value=2.7e-06  Score=77.23  Aligned_cols=109  Identities=10%  Similarity=-0.123  Sum_probs=66.0

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee----------------ccCCCc---ccCcceeeeeEEEEEecC-CCee--eeCCCc
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK----------------YLGTGT---HGKTVGIVFPAISVTYSI-GPRY--FRFPLV   94 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~----------------~~~~~~---~~~Ti~~~~~~k~v~~~~-~~~i--wDt~G~   94 (179)
                      +...+|+ +|..++|   +..++.                ..+.+.   ...|+...+....+.+.. +..+  |||+|+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            3467886 9999999   333322                111111   334665444333333330 3334  999999


Q ss_pred             hhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        95 e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      .+|.......++.+|++++|+|...--..+....|.. +.   ..+      .|++++.||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~------~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KEN------VKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcC------CCEEEEEEChhcc
Confidence            9998888889999999999999877322222222221 11   122      3556889999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.16  E-value=7.4e-06  Score=74.10  Aligned_cols=73  Identities=15%  Similarity=0.019  Sum_probs=53.7

Q ss_pred             EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      ...+..+ +..+  |||+|+.+|.......++.+|++++|+|.++....+....| ..+.+.   .      .|+++++|
T Consensus        67 ~~~~~~~-~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~------~p~ivviN  135 (689)
T TIGR00484        67 ATTVFWK-GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY---E------VPRIAFVN  135 (689)
T ss_pred             eEEEEEC-CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc---C------CCEEEEEE
Confidence            3455566 6666  99999999988888899999999999999886555543333 233322   2      46678899


Q ss_pred             CCCcCC
Q psy15036        155 LELLQR  160 (179)
Q Consensus       155 K~Dl~~  160 (179)
                      |+|+..
T Consensus       136 K~D~~~  141 (689)
T TIGR00484       136 KMDKTG  141 (689)
T ss_pred             CCCCCC
Confidence            999975

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.15  E-value=5.2e-06  Score=77.55  Aligned_cols=59  Identities=12%  Similarity=-0.011  Sum_probs=48.6

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|++.|..++...++.+|++++|+|.++   +++++.+..+    ..   .+      .|+++|+||+|+..
T Consensus       531 iDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~---~~------iPiIVViNKiDL~~  592 (1049)
T PRK14845        531 IDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINIL----RQ---YK------TPFVVAANKIDLIP  592 (1049)
T ss_pred             EECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHH----HH---cC------CCEEEEEECCCCcc
Confidence            9999999999998888999999999999987   7777776532    22   12      47889999999964

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.12  E-value=2.3e-05  Score=54.63  Aligned_cols=94  Identities=13%  Similarity=0.136  Sum_probs=55.8

Q ss_pred             EEE-EeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc----------hhhhhhh
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----------LSLTTGL  104 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----------~~~~~~~  104 (179)
                      ||+ +|..|+|   +++.+.+..    ......|...  ....+.++ +..+  +||+|-..-          ..... .
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~--~~~~~~~~-~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP--VYGQFEYN-NKKFILVDTPGINDGESQDNDGKEIRKFLE-Q   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE--EEEEEEET-TEEEEEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeee--eeeeeeec-eeeEEEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence            576 9999999   555555321    1112223332  22455667 7776  999996321          12333 3


Q ss_pred             hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036        105 YRGTMGFLLIFDVTNE--NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus       105 ~~~~~~vilvyDit~~--~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      +..+|++++|+|.+++  ++..++-+|   ++   ..       .|+++|-||
T Consensus        77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~---l~---~~-------~~~i~v~NK  116 (116)
T PF01926_consen   77 ISKSDLIIYVVDASNPITEDDKNILRE---LK---NK-------KPIILVLNK  116 (116)
T ss_dssp             HCTESEEEEEEETTSHSHHHHHHHHHH---HH---TT-------SEEEEEEES
T ss_pred             HHHCCEEEEEEECCCCCCHHHHHHHHH---Hh---cC-------CCEEEEEcC
Confidence            4789999999998774  233443333   32   22       588888898

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.08  E-value=1.9e-05  Score=63.74  Aligned_cols=72  Identities=13%  Similarity=-0.073  Sum_probs=50.3

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  |||+|+..|.......++.+|++++|.|..+.-.-. ....+..+.+.   +      .|++++.||
T Consensus        57 ~~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~------~p~ivviNK  125 (270)
T cd01886          57 TTCFWK-DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---N------VPRIAFVNK  125 (270)
T ss_pred             EEEEEC-CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---C------CCEEEEEEC
Confidence            445556 6666  999999999888888999999999999987642211 12233333322   2      366788999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+.+
T Consensus       126 ~D~~~  130 (270)
T cd01886         126 MDRTG  130 (270)
T ss_pred             CCCCC
Confidence            99864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.06  E-value=2.8e-05  Score=67.05  Aligned_cols=86  Identities=9%  Similarity=-0.117  Sum_probs=55.1

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh----CCccCccccceEEEEeeCCCc
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD----GALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~----~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      +..+  .|++|+++|.......+..+|++|+|+|.++ .+|+..-.|..+.+++.    ...     .+++|++.||+|+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~g-----i~~iIV~vNKmD~  157 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLG-----VKQMICCCNKMDA  157 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcC-----CCcEEEEEEcccC
Confidence            4445  8999999998888888999999999999886 45543222222222111    111     1467888999998


Q ss_pred             CCCCCCC-------HHHHHHHHhhhC
Q psy15036        159 QRCREVV-------TPDQIMFGSTQS  177 (179)
Q Consensus       159 ~~~r~Vs-------~~e~~~~a~~~~  177 (179)
                      .+ ...+       .+|.+++.++.+
T Consensus       158 ~~-~~~~~~~~~~i~~ei~~~l~~~g  182 (447)
T PLN00043        158 TT-PKYSKARYDEIVKEVSSYLKKVG  182 (447)
T ss_pred             Cc-hhhhHHHHHHHHHHHHHHHHHcC
Confidence            52 1222       355666665543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.05  E-value=2.9e-05  Score=58.93  Aligned_cols=65  Identities=12%  Similarity=0.007  Sum_probs=46.2

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      +..+  +|++|+..|......-.+.+|++|+|.|..+.-.-.. ...+..+...   +      .|+++|.||+|+.
T Consensus        69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~------~p~ivvlNK~D~~  135 (188)
T PF00009_consen   69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---G------IPIIVVLNKMDLI  135 (188)
T ss_dssp             SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-------SEEEEEETCTSS
T ss_pred             ccceeecccccccceeecccceecccccceeeeeccccccccc-cccccccccc---c------cceEEeeeeccch
Confidence            5555  9999999998877778999999999999986533222 2222333322   2      4588889999986

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12736 elongation factor Tu; Reviewed

Probab=98.04  E-value=3.4e-05  Score=65.47  Aligned_cols=67  Identities=12%  Similarity=0.079  Sum_probs=42.9

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..+  +||+|+++|......-...+|++++|+|.+..-. ......+..+... +-       |.+|++.||+|+.+
T Consensus        74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~-g~-------~~~IvviNK~D~~~  142 (394)
T PRK12736         74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV-GV-------PYLVVFLNKVDLVD  142 (394)
T ss_pred             CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc-CC-------CEEEEEEEecCCcc
Confidence            5555  9999999886544445578899999999876311 1112222333332 11       45778899999864

>KOG0090|consensus

Probab=98.03  E-value=0.00019  Score=55.64  Aligned_cols=109  Identities=16%  Similarity=0.133  Sum_probs=68.1

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCccee-eeeEEEEEecCCCee--eeCCCchhchhhhhhhhc---CCcEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGI-VFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYR---GTMGFLLI  114 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~-~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~---~~~~vilv  114 (179)
                      .|+ +|..++|   ++..+..   ..+.+|+-. +-..-.+.++ +...  .|.+|+++.+.-...|++   .+-++|+|
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~---gs~~~TvtSiepn~a~~r~g-s~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLIT---GSHRGTVTSIEPNEATYRLG-SENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             cEEEEecCCCCceeeeeehhc---CCccCeeeeeccceeeEeec-CcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            466 9999999   4444432   244444321 1112344455 4443  899999999877767777   68888988


Q ss_pred             EeCC-ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        115 FDVT-NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       115 yDit-~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .|.. ...-...+..++.++.......   ...||++++.||.|+..
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~---~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVK---KNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccc---cCCCCEEEEecchhhhh
Confidence            8753 3344555556666665444210   02278889999999854

>PRK12735 elongation factor Tu; Reviewed

Probab=98.01  E-value=4.8e-05  Score=64.56  Aligned_cols=67  Identities=9%  Similarity=0.076  Sum_probs=43.2

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..+  +||+|+++|......-...+|++++|+|...... ......+..+... +-       |.++++.||+|+.+
T Consensus        74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~-gi-------~~iivvvNK~Dl~~  142 (396)
T PRK12735         74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV-GV-------PYIVVFLNKCDMVD  142 (396)
T ss_pred             CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc-CC-------CeEEEEEEecCCcc
Confidence            5555  9999999886555555678899999999886322 1222233333322 11       45666789999964

>PLN03126 Elongation factor Tu; Provisional

Probab=97.93  E-value=8.5e-05  Score=64.56  Aligned_cols=109  Identities=9%  Similarity=0.039  Sum_probs=64.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec-------cC----------CCcccCcceeeeeEEEEEecCCCee--eeCCCchhch
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY-------LG----------TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL   98 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~-------~~----------~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~   98 (179)
                      ..++|+ +|..++|   ++.++..       ..          .++...-+.++.....+..+ +..+  +|++|+++|.
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-~~~i~liDtPGh~~f~  158 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHADYV  158 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC-CcEEEEEECCCHHHHH
Confidence            467887 9999999   3333331       00          11111112222222334445 6666  9999999986


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .....-...+|++++|+|.+.-.. .....++..+.... -       +.+|++.||+|+.+
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~g-i-------~~iIvvvNK~Dl~~  211 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVG-V-------PNMVVFLNKQDQVD  211 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-C-------CeEEEEEecccccC
Confidence            655556678999999999875422 22233444444331 1       34777899999854

>PRK12740 elongation factor G; Reviewed

Probab=97.92  E-value=7.9e-05  Score=67.22  Aligned_cols=73  Identities=11%  Similarity=-0.018  Sum_probs=55.0

Q ss_pred             EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      ...+..+ +..+  |||+|+..|......+++.+|++++|+|.+...+......|. .+..   ..      .|+++|.|
T Consensus        52 ~~~~~~~-~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~------~p~iiv~N  120 (668)
T PRK12740         52 ATTCEWK-GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YG------VPRIIFVN  120 (668)
T ss_pred             eEEEEEC-CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cC------CCEEEEEE
Confidence            3455566 6666  999999998887888999999999999999877766555553 2322   12      46778899


Q ss_pred             CCCcCC
Q psy15036        155 LELLQR  160 (179)
Q Consensus       155 K~Dl~~  160 (179)
                      |+|+..
T Consensus       121 K~D~~~  126 (668)
T PRK12740        121 KMDRAG  126 (668)
T ss_pred             CCCCCC
Confidence            999865

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.91  E-value=1.9e-05  Score=66.18  Aligned_cols=66  Identities=17%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             chhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036         94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus        94 ~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      +++|..+...+++.++++++|+|+.+..     ..|.+++.+....       .|+++|+||+||.. +.+..++.+++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~-------~piilV~NK~DLl~-k~~~~~~~~~~  115 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGG-------NPVLLVGNKIDLLP-KSVNLSKIKEW  115 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCC-------CCEEEEEEchhhCC-CCCCHHHHHHH
Confidence            5788899999999999999999987654     4577777766544       47889999999965 45666666655

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.87  E-value=9.4e-05  Score=63.01  Aligned_cols=73  Identities=8%  Similarity=-0.059  Sum_probs=46.3

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  +||+|+++|......-+..+|++++|+|.+..-.-+....|. .+... ..       ++++++.||
T Consensus        73 ~~~~~~-~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~~-------~~iivviNK  142 (406)
T TIGR02034        73 RYFSTD-KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-GI-------RHVVLAVNK  142 (406)
T ss_pred             EEEccC-CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-CC-------CcEEEEEEe
Confidence            344445 5566  999999999655555678999999999986532111111121 12222 22       467888999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+.+
T Consensus       143 ~D~~~  147 (406)
T TIGR02034       143 MDLVD  147 (406)
T ss_pred             ccccc
Confidence            99864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.85  E-value=0.00015  Score=55.68  Aligned_cols=66  Identities=11%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      +..+  .||+|+..|......-...+|++++|.|.+..-. ......+..+.+.. .       |++|++-||.|+.
T Consensus        64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~~-~-------~~iIvviNK~D~~  131 (195)
T cd01884          64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQVG-V-------PYIVVFLNKADMV  131 (195)
T ss_pred             CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-C-------CcEEEEEeCCCCC
Confidence            5555  9999999887766667889999999999876321 11222333333322 1       4577888999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.84  E-value=0.00015  Score=62.93  Aligned_cols=73  Identities=7%  Similarity=-0.094  Sum_probs=45.1

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  +||+|+++|......-.+.+|++++|+|.+..-.-.....| ..+.. ...       +++|++.||
T Consensus       100 ~~~~~~-~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~-lg~-------~~iIvvvNK  169 (474)
T PRK05124        100 RYFSTE-KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL-LGI-------KHLVVAVNK  169 (474)
T ss_pred             EEeccC-CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH-hCC-------CceEEEEEe
Confidence            344455 5566  99999999865444446899999999998653111111111 11222 222       467788999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+.+
T Consensus       170 iD~~~  174 (474)
T PRK05124        170 MDLVD  174 (474)
T ss_pred             ecccc
Confidence            99964

>KOG1707|consensus

Probab=97.83  E-value=7.4e-05  Score=65.21  Aligned_cols=124  Identities=16%  Similarity=0.058  Sum_probs=76.1

Q ss_pred             eeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCe-e---eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-Y---FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-i---wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      -|+.. +|..++|   ++ .++-..+...+..+....+....+... |+. +   -|..-. ....+...- ..+|++++
T Consensus       425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            46665 9999999   33 333333334555565555555555554 333 2   343322 122222222 67899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +||.+++.||.-+..-.+..... ..       .|+++|+.|+||.+..+...-+-.+|+.++.
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~~-~~-------~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~  557 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFDL-YK-------IPCLMVATKADLDEVPQRYSIQPDEFCRQLG  557 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhhc-cC-------CceEEEeeccccchhhhccCCChHHHHHhcC
Confidence            99999999999987665554433 22       5888999999998755433322267776654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.81  E-value=7.7e-05  Score=63.65  Aligned_cols=107  Identities=10%  Similarity=-0.068  Sum_probs=68.6

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLY  105 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~  105 (179)
                      -+|++ +|.++||   +++.+.+...   .+..-|. .|.....+.++ |.++  .||+|-..-..        -...-.
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTT-RDviee~i~i~-G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTT-RDVIEEDINLN-GIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCc-cceEEEEEEEC-CEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            48897 9999999   4444432211   1122222 35566788899 9999  99999754322        234457


Q ss_pred             cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036        106 RGTMGFLLIFDVTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus       106 ~~~~~vilvyDit~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      ..||.+++|+|.+.+.+ .+..-.|      ..+.+      .|+++|.||.||..+..
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~------~~~i~v~NK~DL~~~~~  341 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLALIE------LLPKK------KPIIVVLNKADLVSKIE  341 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHHHH------hcccC------CCEEEEEechhcccccc
Confidence            89999999999998622 2221222      22222      47889999999977433

>cd04165 GTPBP1_like GTPBP1-like

Probab=97.72  E-value=0.00058  Score=53.60  Aligned_cols=66  Identities=12%  Similarity=-0.072  Sum_probs=42.3

Q ss_pred             CCee--eeCCCchhchhhhhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLY--RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~--~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..+  .|++|+++|......-+  +.+|++++|.|.....+ .....++..+....         .|+++|-||+|+.+
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~---------ip~ivvvNK~D~~~  152 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN---------IPVFVVVTKIDLAP  152 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---------CCEEEEEECccccC
Confidence            4445  89999999865433333  36899999999876432 22234444444321         35678899999854

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01855 YqeH YqeH

Probab=97.71  E-value=7.3e-05  Score=56.79  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=43.3

Q ss_pred             chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036         97 FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus        97 ~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      ++.+...++++++++++|+|++++..     .|...+......       .|+++|+||+|+.. +....++...++
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~-------~~~ilV~NK~Dl~~-~~~~~~~~~~~~   87 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGN-------NPVILVGNKIDLLP-KDKNLVRIKNWL   87 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCC-------CcEEEEEEchhcCC-CCCCHHHHHHHH
Confidence            57788889999999999999987642     244444322222       47789999999965 344444444444

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.66  E-value=0.00016  Score=60.44  Aligned_cols=56  Identities=13%  Similarity=0.068  Sum_probs=42.1

Q ss_pred             hchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         96 RFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +-..+.+..+.++|.+++|+|+++++ ++..+..|+..+..   .+      .|++||.||+||..
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~------ip~ILVlNK~DLv~  134 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TG------LEIVLCLNKADLVS  134 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CC------CCEEEEEEchhcCC
Confidence            33445666789999999999999876 56677888876632   22      47788899999953

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.64  E-value=0.00067  Score=55.71  Aligned_cols=119  Identities=8%  Similarity=-0.032  Sum_probs=63.1

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCC---CcccC-cceeeeeEEEEEecCCCee--eeCCCchhchhh-------hhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGT---GTHGK-TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL-------TTG  103 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~---~~~~~-Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~-------~~~  103 (179)
                      ...++|+ +|..|||   +++.+.+...   +.+.+ +....  ......+ +..+  |||+|.......       ...
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~--~~~~~~~-G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM--MVSRTRA-GFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEEEEEC-CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            3578897 9999999   4444443211   11111 11111  1223346 7777  999997654221       111


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036        104 LY--RGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP  167 (179)
Q Consensus       104 ~~--~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~  167 (179)
                      |.  .+.|++++|..++... +... ...++.+....+.++.    -..|+|-++.|.......+.+
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw----~~~IVVfTh~d~~~pd~~~~e  174 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIW----RKSLVVLTHAQFSPPDGLEYN  174 (313)
T ss_pred             HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhh----ccEEEEEECCccCCCCCCCHH
Confidence            22  2689999997665332 3322 3455666655544322    135666788886543344444

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.58  E-value=0.00041  Score=62.32  Aligned_cols=72  Identities=7%  Similarity=-0.012  Sum_probs=45.7

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+..+ +..+  +||+|+++|......-...+|++++|+|.+..-. ......+..+... ..       +++|++.||+
T Consensus        98 ~~~~~-~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~-~~-------~~iivvvNK~  167 (632)
T PRK05506         98 YFATP-KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL-GI-------RHVVLAVNKM  167 (632)
T ss_pred             EEccC-CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh-CC-------CeEEEEEEec
Confidence            44455 5566  9999999886544455789999999999865321 1111112222222 22       4678889999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+.+
T Consensus       168 D~~~  171 (632)
T PRK05506        168 DLVD  171 (632)
T ss_pred             cccc
Confidence            9864

>PLN03127 Elongation factor Tu; Provisional

Probab=97.58  E-value=0.00026  Score=61.10  Aligned_cols=109  Identities=7%  Similarity=0.034  Sum_probs=60.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec-----------------cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY-----------------LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL   98 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~-----------------~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~   98 (179)
                      ..++|. +|....|   +...+..                 ...++....+.++.....+..+ +.++  .||+|+++|.
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-KRHYAHVDCPGHADYV  138 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC-CeEEEEEECCCccchH
Confidence            467787 9999999   3333321                 1111111222222322334444 5555  8999999886


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .....-...+|++++|.|.+..-. .....-+..+.... -       +.+|++-||+|+.+
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~g-i-------p~iIvviNKiDlv~  191 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVG-V-------PSLVVFLNKVDVVD  191 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHcC-C-------CeEEEEEEeeccCC
Confidence            544445567999999999875321 11122222233221 1       34567789999864

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.56  E-value=0.00042  Score=50.64  Aligned_cols=106  Identities=18%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc----hhchhhhhhhhcCCcEEEEEEe
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV----SRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~----e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      ||+ +|..|+|   +.+.+.+. ...|..|..++|....         .||+|.    ..|....-..-.+++.++++.|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~-~~~~~KTq~i~~~~~~---------IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d   72 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE-EIRYKKTQAIEYYDNT---------IDTPGEYIENPRFYHALIVTAQDADVVLLLQD   72 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC-CCCcCccceeEecccE---------EECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence            676 9999999   66555543 3466677766654332         377774    2222222334458999999999


Q ss_pred             CCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        117 VTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       117 it~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      .+++.+ |.-      .+.+.. .       .|+|=|-+|+|+.. .....+.++++-+.
T Consensus        73 at~~~~~~pP------~fa~~f-~-------~pvIGVITK~Dl~~-~~~~i~~a~~~L~~  117 (143)
T PF10662_consen   73 ATEPRSVFPP------GFASMF-N-------KPVIGVITKIDLPS-DDANIERAKKWLKN  117 (143)
T ss_pred             CCCCCccCCc------hhhccc-C-------CCEEEEEECccCcc-chhhHHHHHHHHHH
Confidence            998754 221      111111 1       36777889999973 13344555555444

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12739 elongation factor G; Reviewed

Probab=97.49  E-value=0.00094  Score=60.63  Aligned_cols=72  Identities=13%  Similarity=-0.064  Sum_probs=50.3

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  +||+|+..|.......++.+|++++|.|.+..-.-.... .+..+.+.   .      .|+|++.||
T Consensus        66 ~~~~~~-~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~~---~------~p~iv~iNK  134 (691)
T PRK12739         66 TTCFWK-GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADKY---G------VPRIVFVNK  134 (691)
T ss_pred             EEEEEC-CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHHc---C------CCEEEEEEC
Confidence            445556 6666  999999988887888899999999999987653332222 22223222   1      356788999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+..
T Consensus       135 ~D~~~  139 (691)
T PRK12739        135 MDRIG  139 (691)
T ss_pred             CCCCC
Confidence            99975

>CHL00071 tufA elongation factor Tu

Probab=97.45  E-value=0.0025  Score=54.42  Aligned_cols=109  Identities=9%  Similarity=0.055  Sum_probs=63.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc-----------------CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL-----------------GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL   98 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~-----------------~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~   98 (179)
                      ..++|. +|...+|   ++..+...                 ...+....+..+.....+..+ +..+  .||+|+.+|.
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE-NRHYAHVDCPGHADYV   89 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-CeEEEEEECCChHHHH
Confidence            357886 9999999   33333311                 011111222222222233344 5555  8999999886


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .....-...+|++++|.|.+..-. ......+..+.... -       |.+|++-||.|+.+
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~g-~-------~~iIvvvNK~D~~~  142 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQVG-V-------PNIVVFLNKEDQVD  142 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-C-------CEEEEEEEccCCCC
Confidence            655566788999999999875321 22223333333221 1       34778899999864

>PRK00049 elongation factor Tu; Reviewed

Probab=97.43  E-value=0.0013  Score=55.87  Aligned_cols=67  Identities=7%  Similarity=0.036  Sum_probs=44.5

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..+  .||+|+.+|......-...+|++++|.|.+..-. ......+..+.... .       |.++++.||.|+.+
T Consensus        74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~g-~-------p~iiVvvNK~D~~~  142 (396)
T PRK00049         74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVG-V-------PYIVVFLNKCDMVD  142 (396)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHcC-C-------CEEEEEEeecCCcc
Confidence            5555  8999999886655566789999999999876422 22233334444322 1       34556789999853

>PRK00098 GTPase RsgA; Reviewed

Probab=97.41  E-value=0.0002  Score=58.55  Aligned_cols=48  Identities=10%  Similarity=0.039  Sum_probs=37.6

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ...++|++++|+|+++++++.++ .+|+..+..   .+      .|+++|.||+||.+
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~------ip~iIVlNK~DL~~  125 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NG------IKPIIVLNKIDLLD  125 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CC------CCEEEEEEhHHcCC
Confidence            46899999999999998876664 788877653   22      46778899999963

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.40  E-value=0.00044  Score=58.96  Aligned_cols=102  Identities=11%  Similarity=-0.025  Sum_probs=59.5

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCccee--eeeEEEEEecCCCee--eeCCCchhch---------hhhhhhhcC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGI--VFPAISVTYSIGPRY--FRFPLVSRFL---------SLTTGLYRG  107 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~--~~~~k~v~~~~~~~i--wDt~G~e~~~---------~~~~~~~~~  107 (179)
                      .|. +|-++||   +++++.+....-...+-|+  |-......+. +..+  .||+|-+...         .....-+..
T Consensus         5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            465 9999999   6666664322221222221  1112344556 6666  8999876322         234445778


Q ss_pred             CcEEEEEEeCCCh-hhHH-HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        108 TMGFLLIFDVTNE-NSFK-DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       108 ~~~vilvyDit~~-~Sf~-~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      ||++|+|+|...- ...+ .+-+|    .+ ...       .|+|||.||+|-.
T Consensus        84 ADvilfvVD~~~Git~~D~~ia~~----Lr-~~~-------kpviLvvNK~D~~  125 (444)
T COG1160          84 ADVILFVVDGREGITPADEEIAKI----LR-RSK-------KPVILVVNKIDNL  125 (444)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHH----HH-hcC-------CCEEEEEEcccCc
Confidence            9999999997652 2222 22233    22 222       4889999999964

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.35  E-value=0.00024  Score=57.78  Aligned_cols=52  Identities=4%  Similarity=-0.042  Sum_probs=42.3

Q ss_pred             hhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        101 TTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       101 ~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      .+..+.++|.+++|+|++++. ++..+.+|+..+...   +      .|+++|.||+||.++
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~------ip~iIVlNK~DL~~~  124 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---G------IEPVIVLTKADLLDD  124 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---C------CCEEEEEEHHHCCCh
Confidence            345688999999999999998 999999999877642   2      467788999999653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.25  E-value=0.00062  Score=56.23  Aligned_cols=72  Identities=11%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             EEeCCCCc---eeEeeeccC-------CCcccCcceeeeeEEE---------------EEecCCC---ee--eeCCCc--
Q psy15036         47 QLGRRGIP---LLKHLKYLG-------TGTHGKTVGIVFPAIS---------------VTYSIGP---RY--FRFPLV--   94 (179)
Q Consensus        47 vlG~~gvG---~~~~~~~~~-------~~~~~~Ti~~~~~~k~---------------v~~~~~~---~i--wDt~G~--   94 (179)
                      ++|.++||   ++..++...       -..+.|++|..+....               ...+ +.   .+  ||++|.  
T Consensus         3 ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~v~i~l~D~aGlv~   81 (318)
T cd01899           3 LVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCID-GKRYVPVELIDVAGLVP   81 (318)
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhccccccccc-CcCcceEEEEECCCCCC
Confidence            49999999   555555321       1344677775543211               1122 32   23  999998  


Q ss_pred             --hhchhhhhhh---hcCCcEEEEEEeCCC
Q psy15036         95 --SRFLSLTTGL---YRGTMGFLLIFDVTN  119 (179)
Q Consensus        95 --e~~~~~~~~~---~~~~~~vilvyDit~  119 (179)
                        +++..+...|   ++++|++++|+|++.
T Consensus        82 ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          82 GAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence              6676676665   999999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.13  E-value=0.00076  Score=56.39  Aligned_cols=46  Identities=11%  Similarity=0.000  Sum_probs=37.0

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      -++|++++||+++...+|..+..|+..+..   ..      .|++||.||+||..
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~------i~~VIVlNK~DL~~  164 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACET---LG------IEPLIVLNKIDLLD  164 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cC------CCEEEEEECccCCC
Confidence            349999999999999999999999876542   12      35668899999964

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.11  E-value=0.0046  Score=49.34  Aligned_cols=115  Identities=14%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeeeccC---CCccc-CcceeeeeEEEEEecCCCee--eeCCCchhchh--------
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLKYLG---TGTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------   99 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------   99 (179)
                      ++.+..++|+ +|..|||   ++..+.+..   ...+. .|.....  .....+ +..+  |||+|-.....        
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~-g~~i~vIDTPGl~~~~~~~~~~~~~  102 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVD-GFKLNIIDTPGLLESVMDQRVNRKI  102 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEEC-CeEEEEEECCCcCcchhhHHHHHHH
Confidence            3556789997 9999999   444443321   11222 2332222  233455 6666  99999764421        


Q ss_pred             --hhhhhhc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        100 --LTTGLYR--GTMGFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       100 --~~~~~~~--~~~~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                        ....|..  ..+++++|..++.. .++.. ...++.+.+..+..+.    ..+++|-||+|...
T Consensus       103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~----~~~ivV~T~~d~~~  163 (249)
T cd01853         103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIW----RNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhH----hCEEEEEeCCccCC
Confidence              1122333  57788877666543 22221 2444445544333211    24677889999843

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.09  E-value=0.0058  Score=52.26  Aligned_cols=121  Identities=15%  Similarity=0.043  Sum_probs=74.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCc----------hhchhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV----------SRFLSLT  101 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~----------e~~~~~~  101 (179)
                      ..+||. ||-++||   +++.+.+...    +....|.  +.-...+..+ ++.+  .||+|-          |.|...+
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR--D~I~~~~e~~-~~~~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR--DSIDIEFERD-GRKYVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc--cceeeeEEEC-CeEEEEEECCCCCcccccccceEEEeehh
Confidence            469996 9999999   5555543221    1122232  2334566777 8877  999985          3343322


Q ss_pred             -hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        102 -TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       102 -~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                       ..-...++.++||.|.+..-+-+..+ ....+.+. +        -++++|-||-|+.++++.+.++.++-...
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~-g--------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~  318 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA-G--------RGIVIVVNKWDLVEEDEATMEEFKKKLRR  318 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc-C--------CCeEEEEEccccCCchhhHHHHHHHHHHH
Confidence             23466899999999999875544422 22222222 1        24566789999987666777776654443

>KOG1191|consensus

Probab=97.06  E-value=0.00086  Score=57.71  Aligned_cols=119  Identities=16%  Similarity=0.055  Sum_probs=69.6

Q ss_pred             CceeeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCchh-ch------h--h
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR-FL------S--L  100 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~-~~------~--~  100 (179)
                      ...-++|+ +|.++||   +++.+.....    +....|-  |.....++++ |.++  .||+|--+ -.      .  -
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTR--Daiea~v~~~-G~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTR--DAIEAQVTVN-GVPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcch--hhheeEeecC-CeEEEEEeccccccccCChhHHHhHHH
Confidence            33457887 9999999   5444442222    2222222  3334567788 9998  99999644 11      1  2


Q ss_pred             hhhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        101 TTGLYRGTMGFLLIFDV--TNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       101 ~~~~~~~~~~vilvyDi--t~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ...-.+.+|.+++|+|.  +.-++-..+...++....-.....++.+..+++++.||+|+...
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            23346789999999998  44444444444444433211111122233688899999999764

>PRK00007 elongation factor G; Reviewed

Probab=97.03  E-value=0.0066  Score=55.25  Aligned_cols=72  Identities=13%  Similarity=-0.015  Sum_probs=48.3

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+... +..+  .||+|+..|..-...-++.+|++++|.|...--.-+....|. .+.+.   .      .|++++.||
T Consensus        68 ~~~~~~-~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~---~------~p~iv~vNK  136 (693)
T PRK00007         68 TTCFWK-DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY---K------VPRIAFVNK  136 (693)
T ss_pred             EEEEEC-CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc---C------CCEEEEEEC
Confidence            445556 6666  899999988665666788999999999977543333323332 23322   1      355688999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      .|+.+
T Consensus       137 ~D~~~  141 (693)
T PRK00007        137 MDRTG  141 (693)
T ss_pred             CCCCC
Confidence            99875

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.00  E-value=0.0014  Score=47.39  Aligned_cols=48  Identities=17%  Similarity=0.159  Sum_probs=34.4

Q ss_pred             hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFK--DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~--~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .....+|++++|+|..++.+..  .+..|+...   ...       .|+++|.||+|+..
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~-------k~~iivlNK~DL~~   56 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPR-------KKNILLLNKADLLT   56 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCC-------CcEEEEEechhcCC
Confidence            4578899999999999887655  444555432   122       37788899999954

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.99  E-value=0.006  Score=46.48  Aligned_cols=105  Identities=12%  Similarity=-0.001  Sum_probs=54.9

Q ss_pred             EEE-EeCCCCc---eeEeeecc--CCCc---ccCcceeeeeEEEEEecCCCee--eeCCCchhch--------hhhh---
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYL--GTGT---HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL--------SLTT---  102 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~--~~~~---~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~--------~~~~---  102 (179)
                      +|+ +|..|+|   ++..+.+.  +...   ...|..+.  .....++ +..+  .||+|-....        .+..   
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~-~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWD-GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEEC-CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            576 9999999   44444422  2111   12343322  2334456 7776  9999964331        1111   


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      ....+.|++++|.|+.+ -+-+ -..-++.+++..+....    .++++|-++.|.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~----~~~ivv~T~~d~  128 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVL----DHTIVLFTRGDD  128 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhH----hcEEEEEECccc
Confidence            12457899999999876 2211 12334444444333210    234455666664

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK13768 GTPase; Provisional

Probab=96.96  E-value=0.0013  Score=52.45  Aligned_cols=66  Identities=9%  Similarity=-0.141  Sum_probs=41.5

Q ss_pred             eeCCCchhc---hhhhhhhhcC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036         89 FRFPLVSRF---LSLTTGLYRG-----TMGFLLIFDVTNENSFKDV--EKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        89 wDt~G~e~~---~~~~~~~~~~-----~~~vilvyDit~~~Sf~~l--~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      ||++|+.++   +...+.+++.     ++++++++|.+...+....  ..|+.........       .|+++|.||+|+
T Consensus       102 ~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~-------~~~i~v~nK~D~  174 (253)
T PRK13768        102 VDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG-------LPQIPVLNKADL  174 (253)
T ss_pred             EeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC-------CCEEEEEEhHhh
Confidence            999998774   3344344443     8899999999665433332  2344433333223       477888999998


Q ss_pred             CCC
Q psy15036        159 QRC  161 (179)
Q Consensus       159 ~~~  161 (179)
                      ..+
T Consensus       175 ~~~  177 (253)
T PRK13768        175 LSE  177 (253)
T ss_pred             cCc
Confidence            653

>COG1084 Predicted GTPase [General function prediction only]

Probab=96.92  E-value=0.0074  Score=49.75  Aligned_cols=113  Identities=15%  Similarity=0.018  Sum_probs=65.7

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCC--CcccCc-ceeeeeEEEEEecCCCee--eeCCCc------hhch---hhhhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKT-VGIVFPAISVTYSIGPRY--FRFPLV------SRFL---SLTTGL  104 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~T-i~~~~~~k~v~~~~~~~i--wDt~G~------e~~~---~~~~~~  104 (179)
                      +.-|| -|-++||   +++.+....+  ..|..| -++..  -.+..+ ..++  .||+|-      |+..   ......
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~v--Ghfe~~-~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHV--GHFERG-YLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeE--eeeecC-CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            45566 9999999   6666664322  234333 33222  233344 5555  899994      1111   111112


Q ss_pred             hcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCH
Q psy15036        105 YRGTMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVT  166 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~  166 (179)
                      -+=+++++++||.+...  |.+.-...+++++....        .|+++|.||.|+.+...+..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--------~p~v~V~nK~D~~~~e~~~~  300 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--------APIVVVINKIDIADEEKLEE  300 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--------CCeEEEEecccccchhHHHH
Confidence            22357788899987653  34554567777776654        37888999999875444433

>KOG4273|consensus

Probab=96.88  E-value=0.0024  Score=50.93  Aligned_cols=62  Identities=13%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      ....++++|||++.+..+..++.|+....-..      +  -+.+.+|||.|.....--..+..+.+|+-
T Consensus        77 ~pl~a~vmvfdlse~s~l~alqdwl~htdins------f--dillcignkvdrvphhlahdeyrrrl~ka  138 (418)
T KOG4273|consen   77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINS------F--DILLCIGNKVDRVPHHLAHDEYRRRLAKA  138 (418)
T ss_pred             cceeeEEEEEeccchhhhHHHHhhcccccccc------c--hhheecccccccccchhhhhHHHHHHHhh
Confidence            34578899999999999999999987543322      2  24456799999755333334444555543

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=96.84  E-value=0.01  Score=51.28  Aligned_cols=72  Identities=7%  Similarity=-0.088  Sum_probs=45.9

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHHhCCccCccccceE
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN---SF---KDVEKWLLQIKVMDGALFTHFELQIV  149 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~---Sf---~~l~~w~~~i~~~~~~~~~~~~~~~i  149 (179)
                      ..+..+ +..+  .|++|+++|......-...+|++++|.|.+.-.   .|   .....-+..+.... -       +.+
T Consensus        78 ~~~~~~-~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g-i-------~~i  148 (446)
T PTZ00141         78 WKFETP-KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG-V-------KQM  148 (446)
T ss_pred             EEEccC-CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC-C-------CeE
Confidence            344555 5565  999999999776666688999999999987531   11   12222222222222 1       456


Q ss_pred             EEEeeCCCc
Q psy15036        150 FMRGCLELL  158 (179)
Q Consensus       150 ilvGnK~Dl  158 (179)
                      |++-||.|+
T Consensus       149 iv~vNKmD~  157 (446)
T PTZ00141        149 IVCINKMDD  157 (446)
T ss_pred             EEEEEcccc
Confidence            788899995

>KOG0705|consensus

Probab=96.83  E-value=0.0035  Score=54.87  Aligned_cols=119  Identities=13%  Similarity=0.098  Sum_probs=80.3

Q ss_pred             eeEE-EEeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGT-QLGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Ki-vlG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+|+ |+|+.+.|   ++ +++.+.+..... +.|..|. +.+.++ +...    .|-+|.     ....|....|++|+
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~k-kE~vv~-gqs~lLlirdeg~~-----~~aQft~wvdavIf  101 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFK-KEVVVD-GQSHLLLIRDEGGH-----PDAQFCQWVDAVVF  101 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccC-CcCccce-eeEEee-ccceEeeeecccCC-----chhhhhhhccceEE
Confidence            5788 69999999   44 445566555443 4444565 555555 5554    776663     34678889999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGS  174 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~  174 (179)
                      ||.+.+.+||+.++...-.+..+....     -+|++++|++.-...  .|.+...++..++.
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~-----~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~  159 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNIS-----DLPLILVGTQDHISAKRPRVITDDRARQLSA  159 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccc-----cchHHhhcCcchhhcccccccchHHHHHHHH
Confidence            999999999999988877775443321     268889998765433  34555566655543

>cd01859 MJ1464 MJ1464

Probab=96.70  E-value=0.0018  Score=47.39  Aligned_cols=53  Identities=9%  Similarity=-0.038  Sum_probs=35.0

Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +.+.+...+++|++++|+|.+++.+.... .+...+.   ...      .|+++|.||+|+..
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~------~p~iiv~NK~Dl~~   55 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELG------KKLLIVLNKADLVP   55 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCC------CcEEEEEEhHHhCC
Confidence            45677888999999999999876543321 2222221   112      47788899999853

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1159 Era GTPase [General function prediction only]

Probab=96.63  E-value=0.018  Score=46.90  Aligned_cols=102  Identities=14%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             EEeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc--------hhhhhhhhcCCc
Q psy15036         47 QLGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF--------LSLTTGLYRGTM  109 (179)
Q Consensus        47 vlG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~--------~~~~~~~~~~~~  109 (179)
                      ++|.++||   ++..+.+.-    +...+.|-. .. .-.++.+ +.++  .||+|-.+-        ......-+.++|
T Consensus        11 IiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~-~I-~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD   87 (298)
T COG1159          11 IIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RI-RGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD   87 (298)
T ss_pred             EEcCCCCcHHHHHHHHhcCceEeecCCcchhhh-he-eEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence            39999999   665555332    222233322 11 2334455 5565  899995332        233445578999


Q ss_pred             EEEEEEeCCChhhHHHHHHHH-HHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWL-LQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~-~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ++++|.|.+..  +..-..|+ +.+++   .+      .|++++.||.|.....
T Consensus        88 lilfvvd~~~~--~~~~d~~il~~lk~---~~------~pvil~iNKID~~~~~  130 (298)
T COG1159          88 LILFVVDADEG--WGPGDEFILEQLKK---TK------TPVILVVNKIDKVKPK  130 (298)
T ss_pred             EEEEEEecccc--CCccHHHHHHHHhh---cC------CCeEEEEEccccCCcH
Confidence            99999998863  22222333 33333   22      4788999999986533

>PRK09866 hypothetical protein; Provisional

Probab=96.61  E-value=0.019  Score=51.59  Aligned_cols=77  Identities=12%  Similarity=-0.034  Sum_probs=47.5

Q ss_pred             eeCCCchhc-----hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036         89 FRFPLVSRF-----LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus        89 wDt~G~e~~-----~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      .||+|-..-     .......++++|++++|.|.++.-+... ....+.+++....       .|+++|.||+|+.+...
T Consensus       235 VDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~-------~PVILVVNKIDl~dree  306 (741)
T PRK09866        235 LDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQS-------VPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             EECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCC-------CCEEEEEEcccCCCccc
Confidence            899997542     2223346889999999999987544443 2233334433221       37888999999854333


Q ss_pred             CCHHHHHHHH
Q psy15036        164 VVTPDQIMFG  173 (179)
Q Consensus       164 Vs~~e~~~~a  173 (179)
                      -..++.+++.
T Consensus       307 ddkE~Lle~V  316 (741)
T PRK09866        307 DDADQVRALI  316 (741)
T ss_pred             chHHHHHHHH
Confidence            3345555553

>PRK09602 translation-associated GTPase; Reviewed

Probab=96.58  E-value=0.0069  Score=51.57  Aligned_cols=30  Identities=10%  Similarity=0.117  Sum_probs=24.8

Q ss_pred             eeCCCc----hhchhhhhhh---hcCCcEEEEEEeCC
Q psy15036         89 FRFPLV----SRFLSLTTGL---YRGTMGFLLIFDVT  118 (179)
Q Consensus        89 wDt~G~----e~~~~~~~~~---~~~~~~vilvyDit  118 (179)
                      ||++|.    .+...+...|   ++++|++++|+|..
T Consensus        77 ~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         77 IDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             EEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            999994    4555666677   88999999999997

>COG0218 Predicted GTPase [General function prediction only]

Probab=96.29  E-value=0.022  Score=43.81  Aligned_cols=107  Identities=13%  Similarity=0.025  Sum_probs=59.5

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC-CCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhhhhhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSLTTGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~~~~~~~  106 (179)
                      ..-|+ +|-++||   +++.+++.- .-....|-|.+-..-.+.++ +... .|.+|          ++++..+...|++
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~  102 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE  102 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence            45677 9999999   444444321 12223333332222234555 5443 78887          3566667777776


Q ss_pred             C---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        107 G---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       107 ~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .   -.+++++.|....-.-... ..++-+...   .      .|+++|.||+|--.
T Consensus       103 ~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~------i~~~vv~tK~DKi~  149 (200)
T COG0218         103 KRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---G------IPVIVVLTKADKLK  149 (200)
T ss_pred             hchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---C------CCeEEEEEccccCC
Confidence            4   4667777787654332221 222222222   2      57788899999644

>KOG1423|consensus

Probab=96.23  E-value=0.02  Score=46.99  Aligned_cols=121  Identities=7%  Similarity=-0.064  Sum_probs=63.5

Q ss_pred             cccccccccc-ccCceeeEEE-EeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCchh
Q psy15036         28 CTKVTKMTAA-KEFSFNFGTQ-LGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR   96 (179)
Q Consensus        28 ~~~~~~m~~~-~~~~~~~Kiv-lG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~   96 (179)
                      |-....|+.+ ++-.+.+.|. ||.++||   +.+.+.+..    ..+...|-- +. .-.++-+ ..++  +||+|--.
T Consensus        56 ~~pa~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~i-lgi~ts~-eTQlvf~DTPGlvs  132 (379)
T KOG1423|consen   56 LYPAALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RI-LGIITSG-ETQLVFYDTPGLVS  132 (379)
T ss_pred             CccccccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-ee-eEEEecC-ceEEEEecCCcccc
Confidence            3333444444 3344667775 9999999   444444321    112222211 11 1233334 4444  99999532


Q ss_pred             chh------------hhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         97 FLS------------LTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        97 ~~~------------~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      -..            --..-..+||++++|+|.++....-+ .+-+..+.++..        .|-|||-||.|...
T Consensus       133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys~--------ips~lvmnkid~~k  199 (379)
T KOG1423|consen  133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYSK--------IPSILVMNKIDKLK  199 (379)
T ss_pred             cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHhc--------CCceeeccchhcch
Confidence            111            11123457999999999997322221 233444444432        36678889999754

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=96.10  E-value=0.018  Score=48.68  Aligned_cols=85  Identities=8%  Similarity=0.060  Sum_probs=53.2

Q ss_pred             cceeeeeEEEEEe-cCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhh-------HHHHHHHHHHHHHHhCC
Q psy15036         70 TVGIVFPAISVTY-SIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENS-------FKDVEKWLLQIKVMDGA  139 (179)
Q Consensus        70 Ti~~~~~~k~v~~-~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~S-------f~~l~~w~~~i~~~~~~  139 (179)
                      |.|+.  ...+.+ + +..+  +|.+||..-+.-|..+|.+++++|+|.++++-+-       -+.+..=+..+......
T Consensus       222 T~Gi~--e~~f~~~~-~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~  298 (389)
T PF00503_consen  222 TTGIT--EIDFNFSG-SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN  298 (389)
T ss_dssp             -SSEE--EEEEEE-T-TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred             CCCee--EEEEEeec-ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence            55543  335566 5 6666  9999998888888999999999999998764322       12233323333333222


Q ss_pred             ccCccccceEEEEeeCCCcC
Q psy15036        140 LFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       140 ~~~~~~~~~iilvGnK~Dl~  159 (179)
                      .  -+...++||+-||.|+-
T Consensus       299 ~--~~~~~~iil~lnK~D~f  316 (389)
T PF00503_consen  299 P--WFKNTPIILFLNKIDLF  316 (389)
T ss_dssp             G--GGTTSEEEEEEE-HHHH
T ss_pred             c--ccccCceEEeeecHHHH
Confidence            1  11226888889999973

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.042  Score=47.92  Aligned_cols=59  Identities=8%  Similarity=-0.040  Sum_probs=47.5

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .||+|++-|..|+..=..=+|++|||.+.++   +++.+.++.       ....+      .|+++..||+|..+
T Consensus        60 iDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h-------ak~a~------vP~iVAiNKiDk~~  121 (509)
T COG0532          60 IDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH-------AKAAG------VPIVVAINKIDKPE  121 (509)
T ss_pred             EcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH-------HHHCC------CCEEEEEecccCCC
Confidence            8999999999999877888999999999887   566666543       22233      68889999999863

>PRK13796 GTPase YqeH; Provisional

Probab=96.08  E-value=0.017  Score=48.57  Aligned_cols=63  Identities=19%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             hchhhhhhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036         96 RFLSLTTGLYRGTM-GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus        96 ~~~~~~~~~~~~~~-~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      .|...... ....+ .+++|.|+.+..     ..|...+.+....       .|+++|+||+||.. +.+..++.++|
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~-------kpviLViNK~DLl~-~~~~~~~i~~~  121 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVGN-------NPVLLVGNKADLLP-KSVKKNKVKNW  121 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhCC-------CCEEEEEEchhhCC-CccCHHHHHHH
Confidence            44443333 34445 888899987643     4467777766554       36788999999964 45656666555

>cd01882 BMS1 Bms1

Probab=96.07  E-value=0.039  Score=43.20  Aligned_cols=102  Identities=19%  Similarity=0.097  Sum_probs=54.2

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCc-ccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGT-HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~-~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ...|. +|.+|+|   +++.+....... .....| .+.  .+... +..+  .||+|.-  ..+. ...+.+|+++++.
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~~~~-~~~i~~vDtPg~~--~~~l-~~ak~aDvVllvi  111 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VVTGK-KRRLTFIECPNDI--NAMI-DIAKVADLVLLLI  111 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EEecC-CceEEEEeCCchH--HHHH-HHHHhcCEEEEEE
Confidence            35565 9999999   443443321111 111112 111  12224 5555  8999864  2232 2468899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.+....... ...+..+... +.       |.+++|.||.|+.+
T Consensus       112 Da~~~~~~~~-~~i~~~l~~~-g~-------p~vi~VvnK~D~~~  147 (225)
T cd01882         112 DASFGFEMET-FEFLNILQVH-GF-------PRVMGVLTHLDLFK  147 (225)
T ss_pred             ecCcCCCHHH-HHHHHHHHHc-CC-------CeEEEEEeccccCC
Confidence            9875433222 2233333322 11       45666899999853

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1145|consensus

Probab=96.07  E-value=0.026  Score=49.57  Aligned_cols=68  Identities=12%  Similarity=0.033  Sum_probs=51.6

Q ss_pred             EEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         80 VTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        80 v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      +.+..|+.+  .||+|+.-|..|+..=-+-+|.++||....|   +++.+.++.       ....+      .|+|+.-|
T Consensus       195 V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-------Ak~A~------VpiVvAin  261 (683)
T KOG1145|consen  195 VTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-------AKSAN------VPIVVAIN  261 (683)
T ss_pred             EecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH-------HHhcC------CCEEEEEe
Confidence            333338888  8999999999999888888999999996665   577666543       22333      68889999


Q ss_pred             CCCcCC
Q psy15036        155 LELLQR  160 (179)
Q Consensus       155 K~Dl~~  160 (179)
                      |+|..+
T Consensus       262 KiDkp~  267 (683)
T KOG1145|consen  262 KIDKPG  267 (683)
T ss_pred             ccCCCC
Confidence            999653

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.07  E-value=0.02  Score=53.26  Aligned_cols=61  Identities=15%  Similarity=-0.091  Sum_probs=43.4

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      .||+|+..|..-...-++.+|++|+|.|...--.-.....|.. +..   .+      .|++++.||.|+.
T Consensus       103 iDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~------~p~i~~iNK~D~~  163 (843)
T PLN00116        103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ER------IRPVLTVNKMDRC  163 (843)
T ss_pred             ECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CC------CCEEEEEECCccc
Confidence            8999999998777777899999999999886533222233322 222   22      4667778999986

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.03  E-value=0.036  Score=34.06  Aligned_cols=44  Identities=14%  Similarity=0.022  Sum_probs=28.3

Q ss_pred             CCcEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036        107 GTMGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL  157 (179)
Q Consensus       107 ~~~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D  157 (179)
                      -.+++++++|++..--  .+.=-..+++++...++       .|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~-------~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN-------KPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT-------S-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC-------CCEEEEEeccC
Confidence            3578889999988744  44445677888877765       48889999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0082|consensus

Probab=95.98  E-value=0.049  Score=45.57  Aligned_cols=98  Identities=11%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             eeeccCCCcccC-----------cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhH-
Q psy15036         58 HLKYLGTGTHGK-----------TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSF-  123 (179)
Q Consensus        58 ~~~~~~~~~~~~-----------Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf-  123 (179)
                      ++.....++|.|           |.|+.  ...+.+. +..+  +|.+||..-+.=|-++|.+++++|+|.+++.-+-. 
T Consensus       159 ~l~rI~~~~Y~PT~~DIL~~R~~T~GI~--e~~F~~k-~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l  235 (354)
T KOG0082|consen  159 NLDRISSPDYVPTEQDILRSRVPTTGIV--EVEFTIK-GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVL  235 (354)
T ss_pred             hHHHhcCCCCCCCHHHHHhhccCcCCee--EEEEEeC-CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhc
Confidence            333445566666           55533  3456677 7776  99999988888888899999999999988765332 


Q ss_pred             ------HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        124 ------KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       124 ------~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                            +.+..=++.+......+  -+...++||.-||.||-+
T Consensus       236 ~ED~~~NRM~eS~~LF~sI~n~~--~F~~tsiiLFLNK~DLFe  276 (354)
T KOG0082|consen  236 EEDETTNRMHESLKLFESICNNK--WFANTSIILFLNKKDLFE  276 (354)
T ss_pred             ccccchhHHHHHHHHHHHHhcCc--ccccCcEEEEeecHHHHH
Confidence                  22222222233333221  123367888899999954

>cd01858 NGP_1 NGP-1

Probab=95.97  E-value=0.021  Score=41.84  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=30.5

Q ss_pred             hhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      -+.++|.+++|.|..++.+  ...+..++   ......       .|+++|.||+|+..
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~~~~-------~p~ilVlNKiDl~~   53 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKEKPH-------KHLIFVLNKCDLVP   53 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---HhccCC-------CCEEEEEEchhcCC
Confidence            4678999999999988632  22223332   222222       36788899999954

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=95.80  E-value=0.16  Score=46.10  Aligned_cols=115  Identities=10%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeeecc--CC-Ccc-cCcceeeeeEEEEEecCCCee--eeCCCchhch-------hh
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLKYL--GT-GTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SL  100 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~~--~~-~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~  100 (179)
                      ++.++.++|+ +|..|||   +++.+.+.  +. ... ..|...  .......+ +..+  +||+|-....       .+
T Consensus       113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~id-G~~L~VIDTPGL~dt~~dq~~neeI  189 (763)
T TIGR00993       113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQ-GVKIRVIDTPGLKSSASDQSKNEKI  189 (763)
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEEC-CceEEEEECCCCCccccchHHHHHH
Confidence            5667788997 9999999   33333321  11 111 223222  11223346 6666  9999965431       11


Q ss_pred             ---hhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        101 ---TTGLYR--GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       101 ---~~~~~~--~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                         ...++.  ..|++++|..++......+-..+++.+.+..+..+.+.    .|||-+..|..
T Consensus       190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~----tIVVFThgD~l  249 (763)
T TIGR00993       190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFN----AIVTLTHAASA  249 (763)
T ss_pred             HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcC----EEEEEeCCccC
Confidence               122433  58999999988754443333477888887777654322    34445555553

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PTZ00416 elongation factor 2; Provisional

Probab=95.79  E-value=0.037  Score=51.49  Aligned_cols=61  Identities=16%  Similarity=-0.069  Sum_probs=43.2

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      .||+|+..|..-...-++.+|++|+|.|.+..-.-..-..| ..+.+.   +      .|+|++.||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~---~------~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE---R------IRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc---C------CCEEEEEEChhhh
Confidence            89999999987777788999999999998774222222233 333322   2      3667778999986

>KOG1144|consensus

Probab=95.63  E-value=0.036  Score=50.38  Aligned_cols=65  Identities=9%  Similarity=-0.041  Sum_probs=48.5

Q ss_pred             EEecCCCeeeeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         80 VTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        80 v~~~~~~~iwDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      +.+. |-.+.||+|++.|..++...-.-+|.+|||.|+..   +++.+.+...       ...+      .|+|+.-||+
T Consensus       537 ~kvP-g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lL-------R~rk------tpFivALNKi  602 (1064)
T KOG1144|consen  537 LKVP-GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLL-------RMRK------TPFIVALNKI  602 (1064)
T ss_pred             cCCC-eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHH-------HhcC------CCeEEeehhh
Confidence            3344 44449999999999999999999999999999875   4555544332       2223      6888889999


Q ss_pred             Cc
Q psy15036        157 LL  158 (179)
Q Consensus       157 Dl  158 (179)
                      |.
T Consensus       603 DR  604 (1064)
T KOG1144|consen  603 DR  604 (1064)
T ss_pred             hh
Confidence            96

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=95.57  E-value=0.035  Score=48.24  Aligned_cols=64  Identities=8%  Similarity=-0.029  Sum_probs=41.1

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .|++|+++|-...-.-...+|++++|.|.+..-.-......+..+ +...-       +++|+|-||+|+.+
T Consensus       122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi-------~~iIVvlNKiDlv~  185 (460)
T PTZ00327        122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL-------KHIIILQNKIDLVK  185 (460)
T ss_pred             eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC-------CcEEEEEecccccC
Confidence            899999998655445567899999999998631111111222222 22222       46788899999964

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=95.56  E-value=0.092  Score=40.64  Aligned_cols=92  Identities=16%  Similarity=0.086  Sum_probs=44.7

Q ss_pred             eEEE-EeCCCCc---eeEeeecc--CCCc---ccCcceeeeeEEEEEecCCCee--eeCCCchhc--------hhhh---
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYL--GTGT---HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF--------LSLT---  101 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~--~~~~---~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~--------~~~~---  101 (179)
                      ++|| +|..|+|   +...+.+.  |...   ...|....  .....++ +..+  +||+|--.-        ..+.   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~--~~~~~~~-g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l   77 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQ--KYSGEVD-GRQVTVIDTPGLFDSDGSDEEIIREIKRCL   77 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-E--EEEEEET-TEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccc--eeeeeec-ceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence            4787 9999999   33333321  2222   12233322  3344667 7777  899983211        1111   


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCc
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGAL  140 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~  140 (179)
                      .....+.|+++||..+.+. +-.. ..-++.+.+..+..
T Consensus        78 ~~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~  114 (212)
T PF04548_consen   78 SLCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEE  114 (212)
T ss_dssp             HHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGG
T ss_pred             HhccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHH
Confidence            1234579999999998822 2222 33444455555543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=95.53  E-value=0.041  Score=50.45  Aligned_cols=61  Identities=10%  Similarity=-0.154  Sum_probs=42.5

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      .||+|+..|.......++.+|++|+|.|....-.-.....|.. +.+.  .       .|+|++.||+|+.
T Consensus        92 iDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~--~-------~~~iv~iNK~D~~  152 (731)
T PRK07560         92 IDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE--R-------VKPVLFINKVDRL  152 (731)
T ss_pred             EcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc--C-------CCeEEEEECchhh
Confidence            8999999998877888999999999999776432222233332 2222  1       2346778999975

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=95.52  E-value=0.04  Score=40.31  Aligned_cols=43  Identities=7%  Similarity=-0.065  Sum_probs=28.0

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.+++|.|..++.+...  .|+.. ......+      .|+++|.||+|+..
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~------~p~IiVlNK~Dl~~   43 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKG------KKLILVLNKADLVP   43 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCC------CCEEEEEechhcCC
Confidence            67899999988866653  34442 1111122      47788899999953

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0462|consensus

Probab=95.48  E-value=0.078  Score=46.68  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      .||+|+..|..--...+.-++|++||.|.+.----+-+-.++..+.    .+      ..+|.|-||+|+...
T Consensus       130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~------L~iIpVlNKIDlp~a  192 (650)
T KOG0462|consen  130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AG------LAIIPVLNKIDLPSA  192 (650)
T ss_pred             ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cC------CeEEEeeeccCCCCC
Confidence            9999999998877778889999999999875322222222222222    12      467788899999763

>cd01859 MJ1464 MJ1464

Probab=95.42  E-value=0.018  Score=42.03  Aligned_cols=50  Identities=14%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL   93 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G   93 (179)
                      ..+++ +|.+++|   +++.+.......+.++.|.+.....+..+ +.-. |||+|
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKIT-SKIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcC-CCEEEEECcC
Confidence            46777 9999999   55565555555667777765544444455 4333 99998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=95.36  E-value=0.17  Score=42.16  Aligned_cols=67  Identities=15%  Similarity=0.064  Sum_probs=43.7

Q ss_pred             eeCCCchh----chhhhhhhhc---CCcEEEEEEeCCChh---hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036         89 FRFPLVSR----FLSLTTGLYR---GTMGFLLIFDVTNEN---SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        89 wDt~G~e~----~~~~~~~~~~---~~~~vilvyDit~~~---Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      =|++|--+    -..+-..|+|   .+.+++.|.|++..+   ..++.+....++..+...-.   + -|.+||.||+|+
T Consensus       212 ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~---~-K~~ivv~NKiD~  287 (369)
T COG0536         212 ADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLA---E-KPRIVVLNKIDL  287 (369)
T ss_pred             ecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhc---c-CceEEEEeccCC
Confidence            67776422    2234444555   588999999998765   47777777777776654311   1 266788999996


Q ss_pred             C
Q psy15036        159 Q  159 (179)
Q Consensus       159 ~  159 (179)
                      .
T Consensus       288 ~  288 (369)
T COG0536         288 P  288 (369)
T ss_pred             C
Confidence            3

>COG2262 HflX GTPases [General function prediction only]

Probab=95.34  E-value=0.14  Score=43.43  Aligned_cols=108  Identities=10%  Similarity=-0.039  Sum_probs=70.1

Q ss_pred             eEE-EEeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc--hhhhhhh------hc
Q psy15036         44 FGT-QLGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF--LSLTTGL------YR  106 (179)
Q Consensus        44 ~Ki-vlG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~--~~~~~~~------~~  106 (179)
                      ..| ++|=-+.|   +++.+++..   ....-.|...  ..+.+.+.+|..+  =||.|--+-  ..+...|      ..
T Consensus       193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdp--ttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~  270 (411)
T COG2262         193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDP--TTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK  270 (411)
T ss_pred             CeEEEEeeccccHHHHHHHHhccCeeccccccccccC--ceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence            345 39999999   665555321   1122234432  3456666634555  788884221  1222222      45


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      ++|.++.|.|.++++.-+.+..-.+.+.+.....      +|+|+|-||.|+-
T Consensus       271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~------~p~i~v~NKiD~~  317 (411)
T COG2262         271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADE------IPIILVLNKIDLL  317 (411)
T ss_pred             cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC------CCEEEEEeccccc
Confidence            8999999999999988888777777777765554      6899999999964

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=95.20  E-value=0.074  Score=51.28  Aligned_cols=47  Identities=13%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             CCcEEEEEEeCCChhh---------HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036        107 GTMGFLLIFDVTNENS---------FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus       107 ~~~~vilvyDit~~~S---------f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      -.+|||++.|+.+--+         -..++..+.++.+..+-.      .||.||-+|+|+-
T Consensus       201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~------~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR------FPVYLVLTKADLL  256 (1169)
T ss_pred             CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC------CCEEEEEecchhh
Confidence            4899999998765421         134566777777776665      7899999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=95.14  E-value=0.067  Score=46.59  Aligned_cols=90  Identities=16%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchhhhhhhhcC----CcE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLSLTTGLYRG----TMG  110 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~~~~~~~~~----~~~  110 (179)
                      --|+ +|+.++|   ++.++..  .+.+.++.|.+|..-.+.-+...   ++  |-..|...+..+.+.-+..    --.
T Consensus        26 k~vlvlG~~~~GKttli~~L~~--~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~  103 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQG--IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL  103 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhc--cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence            3465 9999999   6555553  45677888887754333222011   12  9888876666655443332    357


Q ss_pred             EEEEEeCCChhhH-HHHHHHHHHHHH
Q psy15036        111 FLLIFDVTNENSF-KDVEKWLLQIKV  135 (179)
Q Consensus       111 vilvyDit~~~Sf-~~l~~w~~~i~~  135 (179)
                      +|||.|++.+-.+ +.|.+|+..+++
T Consensus       104 vvIvlDlS~PW~~~esL~~W~~vl~~  129 (472)
T PF05783_consen  104 VVIVLDLSKPWNIMESLEKWLSVLRE  129 (472)
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHHH
Confidence            7889999999765 466777766543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=95.13  E-value=0.037  Score=43.87  Aligned_cols=67  Identities=15%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             eeCCCchhchhhhhhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         89 FRFPLVSRFLSLTTGLY--------RGTMGFLLIFDVTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~--------~~~~~vilvyDit~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      +||+||.++...+....        ...-+++++.|...-.+ -.-+..++-.+.......      .|.|.|-||+|+.
T Consensus        96 ~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~------lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   96 FDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE------LPHVNVLSKIDLL  169 (238)
T ss_dssp             EE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT------SEEEEEE--GGGS
T ss_pred             EeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC------CCEEEeeeccCcc
Confidence            89999998876665554        45667888888654433 222233333333222222      6888899999997


Q ss_pred             CC
Q psy15036        160 RC  161 (179)
Q Consensus       160 ~~  161 (179)
                      ++
T Consensus       170 ~~  171 (238)
T PF03029_consen  170 SK  171 (238)
T ss_dssp             -H
T ss_pred             cc
Confidence            63

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1489|consensus

Probab=94.49  E-value=0.11  Score=42.86  Aligned_cols=67  Identities=13%  Similarity=0.248  Sum_probs=46.8

Q ss_pred             eeCCCchh----chhhhhhhhc---CCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036         89 FRFPLVSR----FLSLTTGLYR---GTMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        89 wDt~G~e~----~~~~~~~~~~---~~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      =|.+|--+    -+.+-..|+|   .+..+++|.|++.+   +.++.++....++..+...-.   + -|.++|+||+|+
T Consensus       249 ADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~---~-rp~liVaNKiD~  324 (366)
T KOG1489|consen  249 ADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLA---D-RPALIVANKIDL  324 (366)
T ss_pred             ccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhc---c-CceEEEEeccCc
Confidence            47776432    2334455555   58999999999999   888888887777765543210   1 367788999999


Q ss_pred             C
Q psy15036        159 Q  159 (179)
Q Consensus       159 ~  159 (179)
                      .
T Consensus       325 ~  325 (366)
T KOG1489|consen  325 P  325 (366)
T ss_pred             h
Confidence            4

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=94.49  E-value=0.15  Score=45.76  Aligned_cols=109  Identities=12%  Similarity=0.048  Sum_probs=66.4

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCC-CcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc--CC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGT-GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR--GT  108 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~--~~  108 (179)
                      .+|- +|+++||   +++.+++... -..=|-+-+|.+.-.+... +..+  .|.+|--...      ...+.|+.  ..
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~-~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~   82 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK-GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP   82 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec-CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence            4574 9999999   6666664321 1112333345666666777 7766  8988864332      34455554  46


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV  165 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs  165 (179)
                      |++|-|.|-+|-+-=-.+   --++.+.   .      .|++++-|+.|+.+++-+.
T Consensus        83 D~ivnVvDAtnLeRnLyl---tlQLlE~---g------~p~ilaLNm~D~A~~~Gi~  127 (653)
T COG0370          83 DLIVNVVDATNLERNLYL---TLQLLEL---G------IPMILALNMIDEAKKRGIR  127 (653)
T ss_pred             CEEEEEcccchHHHHHHH---HHHHHHc---C------CCeEEEeccHhhHHhcCCc
Confidence            999999999986432222   1122222   2      3678889999997755544

>KOG0468|consensus

Probab=94.39  E-value=0.069  Score=48.10  Aligned_cols=60  Identities=17%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      .||+|+-.|..-...-++-+|++++|+|+..--+++- .+.++.+.+   +.      .|+++|.||.|.
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~------~~i~vviNKiDR  261 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NR------LPIVVVINKVDR  261 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---cc------CcEEEEEehhHH
Confidence            8999999999888888999999999999987655543 233333222   22      688899999996

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=94.12  E-value=0.05  Score=39.19  Aligned_cols=49  Identities=12%  Similarity=0.009  Sum_probs=29.0

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV   94 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~   94 (179)
                      +++ +|.+|||   +++.+..........+.|.+.....+.++ +... |||+|-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-PTITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-CCEEEEECCCc
Confidence            776 9999999   55444432221222333334445566777 5544 999984

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG3596 Predicted GTPase [General function prediction only]

Probab=94.09  E-value=0.06  Score=43.56  Aligned_cols=109  Identities=13%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             eeEEE-EeCCCCceeEeeeccCCCcccC--cce--eeeeEE-EEEecCCCee--eeCCCchh-------chhhhhhhhcC
Q psy15036         43 NFGTQ-LGRRGIPLLKHLKYLGTGTHGK--TVG--IVFPAI-SVTYSIGPRY--FRFPLVSR-------FLSLTTGLYRG  107 (179)
Q Consensus        43 ~~Kiv-lG~~gvG~~~~~~~~~~~~~~~--Ti~--~~~~~k-~v~~~~~~~i--wDt~G~e~-------~~~~~~~~~~~  107 (179)
                      ...|+ +|..|+|...-+...|..+..+  -+|  .+...+ ...++ ++.+  ||++|-+.       ++..-..++..
T Consensus        39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~  117 (296)
T COG3596          39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK  117 (296)
T ss_pred             ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence            57786 9999999221122222111111  111  111111 12234 4444  99999765       56666778889


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .|.++++-+..++.=--.. +.+.++.-..-..       +++++-|.+|...
T Consensus       118 ~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~-------~~i~~VtQ~D~a~  162 (296)
T COG3596         118 LDLVLWLIKADDRALGTDE-DFLRDVIILGLDK-------RVLFVVTQADRAE  162 (296)
T ss_pred             ccEEEEeccCCCccccCCH-HHHHHHHHhccCc-------eeEEEEehhhhhc
Confidence            9988888888876322222 3333343333322       6677789999754

>cd01856 YlqF YlqF

Probab=93.87  E-value=0.049  Score=40.53  Aligned_cols=53  Identities=9%  Similarity=-0.110  Sum_probs=33.4

Q ss_pred             hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..........++|.+++|+|.+++.+.... .+    .+....       .++++|.||+|+.+
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~~~-------k~~ilVlNK~Dl~~   60 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKILGN-------KPRIIVLNKADLAD   60 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHhcC-------CCEEEEEehhhcCC
Confidence            3334445678899999999999876543221 12    222222       25678899999954

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=93.85  E-value=0.13  Score=43.54  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=47.7

Q ss_pred             eeeEE-EEeCCCCc---eeEeeeccCCCcccC-ccee---eeeEEEEEecCC-Cee--eeCCCchhchhhhhhh-----h
Q psy15036         42 FNFGT-QLGRRGIP---LLKHLKYLGTGTHGK-TVGI---VFPAISVTYSIG-PRY--FRFPLVSRFLSLTTGL-----Y  105 (179)
Q Consensus        42 ~~~Ki-vlG~~gvG---~~~~~~~~~~~~~~~-Ti~~---~~~~k~v~~~~~-~~i--wDt~G~e~~~~~~~~~-----~  105 (179)
                      ..+.| |.|++|+|   +++-+.+..+++... ..|+   +-....+... . ..+  ||.+|-..-......|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            35778 49999999   555554443332221 1111   1111222332 2 123  9999965433333333     4


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      ..-|.+|++.+    +.|....-|+....+..+.        ++.+|-+|+|.
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~gK--------~fyfVRTKvD~  153 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQRMGK--------KFYFVRTKVDS  153 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHHTT---------EEEEEE--HHH
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHHcCC--------cEEEEEecccc
Confidence            46798888876    4555555444443333332        67888999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=93.77  E-value=0.23  Score=45.32  Aligned_cols=65  Identities=12%  Similarity=-0.090  Sum_probs=46.8

Q ss_pred             Cee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         86 PRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        86 ~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..+  .||+|+-.|..-...-++-+|++++|+|...--..+.-.-|....+    .+      .|.+++-||.|...
T Consensus        76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~------vp~i~fiNKmDR~~  142 (697)
T COG0480          76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YG------VPRILFVNKMDRLG  142 (697)
T ss_pred             eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cC------CCeEEEEECccccc
Confidence            555  8999999999888889999999999999876533333334533222    22      46667789999743

>KOG3905|consensus

Probab=93.56  E-value=0.31  Score=40.62  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecC-C--Cee--eeCCCchhchhhhhhhhcCC----cE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSI-G--PRY--FRFPLVSRFLSLTTGLYRGT----MG  110 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~-~--~~i--wDt~G~e~~~~~~~~~~~~~----~~  110 (179)
                      -.|+ +|+.|.|   ++.++.+.  +.+.+--|.++..-.++-.. +  .++  |-..|.--...+...-+...    ..
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~--e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGS--ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcc--cccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            3466 9999999   77777753  45666666666432222110 0  111  88777665544444333322    46


Q ss_pred             EEEEEeCCCh-hhHHHHHHHHHHHHHH
Q psy15036        111 FLLIFDVTNE-NSFKDVEKWLLQIKVM  136 (179)
Q Consensus       111 vilvyDit~~-~Sf~~l~~w~~~i~~~  136 (179)
                      +||+.|++++ .-.+.+++|..-++++
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~eh  157 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREH  157 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence            7889999999 5577889998876654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=93.33  E-value=0.82  Score=33.95  Aligned_cols=74  Identities=12%  Similarity=0.018  Sum_probs=50.5

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      .|+++...  ......+..+|.++++...+ ..+...+..+++.+++..         .++.+|.||.|....   ..++
T Consensus        98 iDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~---------~~~~vV~N~~~~~~~---~~~~  162 (179)
T cd03110          98 IDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG---------IPVGVVINKYDLNDE---IAEE  162 (179)
T ss_pred             EECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC---------CCEEEEEeCCCCCcc---hHHH
Confidence            89986532  23345678999999999876 457777888877776531         245678899987532   3456


Q ss_pred             HHHHHhhhC
Q psy15036        169 QIMFGSTQS  177 (179)
Q Consensus       169 ~~~~a~~~~  177 (179)
                      ++++.++.+
T Consensus       163 ~~~~~~~~~  171 (179)
T cd03110         163 IEDYCEEEG  171 (179)
T ss_pred             HHHHHHHcC
Confidence            777776654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=93.25  E-value=0.54  Score=41.06  Aligned_cols=66  Identities=15%  Similarity=0.078  Sum_probs=45.5

Q ss_pred             CCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         85 GPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        85 ~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |+.+    .||+|+..|.---...+.-+.|++||.|.+.--.-+.+.+.+..+.    .+      .-+|-|-||+||..
T Consensus        73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~------LeIiPViNKIDLP~  142 (603)
T COG0481          73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NN------LEIIPVLNKIDLPA  142 (603)
T ss_pred             CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cC------cEEEEeeecccCCC
Confidence            4555    8999999997666667888999999999886433333333322222    22      45667789999965

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=93.13  E-value=0.25  Score=42.88  Aligned_cols=81  Identities=19%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             ceeeeeEE--EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCcccc
Q psy15036         71 VGIVFPAI--SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFEL  146 (179)
Q Consensus        71 i~~~~~~k--~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~  146 (179)
                      -|+++..|  .+.++ +..|  .||+|+..|..--...++-.|+++|+.|... -.....+--++......         
T Consensus        52 RGITILaKnTav~~~-~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~g---------  120 (603)
T COG1217          52 RGITILAKNTAVNYN-GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALALG---------  120 (603)
T ss_pred             cCcEEEeccceeecC-CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHHcC---------
Confidence            34444444  34455 6666  9999999998888888999999999999654 22333333333333332         


Q ss_pred             ceEEEEeeCCCcCCCC
Q psy15036        147 QIVFMRGCLELLQRCR  162 (179)
Q Consensus       147 ~~iilvGnK~Dl~~~r  162 (179)
                      .+.|+|.||.|..+-|
T Consensus       121 L~PIVVvNKiDrp~Ar  136 (603)
T COG1217         121 LKPIVVINKIDRPDAR  136 (603)
T ss_pred             CCcEEEEeCCCCCCCC
Confidence            2335667999987644

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=93.03  E-value=0.77  Score=37.31  Aligned_cols=52  Identities=12%  Similarity=-0.032  Sum_probs=28.8

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      ..|+++++.+.+.. ....  .=++.+++....       ..+|=|..|+|.     ++.+|...+-
T Consensus       113 RVH~cLYfI~pt~~-~L~~--~Di~~mk~Ls~~-------vNvIPvIaKaD~-----lt~~el~~~k  164 (281)
T PF00735_consen  113 RVHACLYFIPPTGH-GLKP--LDIEFMKRLSKR-------VNVIPVIAKADT-----LTPEELQAFK  164 (281)
T ss_dssp             -EEEEEEEE-TTSS-SS-H--HHHHHHHHHTTT-------SEEEEEESTGGG-----S-HHHHHHHH
T ss_pred             CcceEEEEEcCCCc-cchH--HHHHHHHHhccc-------ccEEeEEecccc-----cCHHHHHHHH
Confidence            47999999998753 1111  122334444443       456666789985     5666665553

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=92.74  E-value=0.29  Score=36.75  Aligned_cols=44  Identities=9%  Similarity=-0.084  Sum_probs=25.9

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |++++|.|...+.+-.+ ..+.+.+. ....+      .|+|+|.||+||.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~------kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGN------KKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCC------CCEEEEEehhhcCC
Confidence            68899999887643321 12222221 11112      37788899999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=92.68  E-value=0.64  Score=39.15  Aligned_cols=79  Identities=14%  Similarity=0.036  Sum_probs=44.6

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH-
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP-  167 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~-  167 (179)
                      -||+|++.|..-.-.=-..||.+|+..|.- +.-.+.. +-..-|....+-       .-++|.-||.||.+-.+-..+ 
T Consensus        91 ADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QT-rRHs~I~sLLGI-------rhvvvAVNKmDLvdy~e~~F~~  161 (431)
T COG2895          91 ADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQT-RRHSFIASLLGI-------RHVVVAVNKMDLVDYSEEVFEA  161 (431)
T ss_pred             ecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHh-HHHHHHHHHhCC-------cEEEEEEeeecccccCHHHHHH
Confidence            799999988432222344689999999972 2112221 111222233333       357788999999774443332 


Q ss_pred             ---HHHHHHhhh
Q psy15036        168 ---DQIMFGSTQ  176 (179)
Q Consensus       168 ---e~~~~a~~~  176 (179)
                         +-..||++.
T Consensus       162 I~~dy~~fa~~L  173 (431)
T COG2895         162 IVADYLAFAAQL  173 (431)
T ss_pred             HHHHHHHHHHHc
Confidence               344555553

>KOG0467|consensus

Probab=92.13  E-value=0.38  Score=44.01  Aligned_cols=100  Identities=13%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             ceeEeeeccCCCcccCcceeeeeEEEEEe--cCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHH
Q psy15036         54 PLLKHLKYLGTGTHGKTVGIVFPAISVTY--SIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDV  126 (179)
Q Consensus        54 G~~~~~~~~~~~~~~~Ti~~~~~~k~v~~--~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l  126 (179)
                      |.+|++....   -..|-|++-..-.+.+  . +..+  .|++|+-.|.+....-.+-+|++++..|+..   .++..-+
T Consensus        42 gkirfld~re---deq~rgitmkss~is~~~~-~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vl  117 (887)
T KOG0467|consen   42 GKIRFLDTRE---DEQTRGITMKSSAISLLHK-DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVL  117 (887)
T ss_pred             cceeeccccc---hhhhhceeeeccccccccC-ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHH
Confidence            3555554332   2345555554444443  4 4444  8999999999988888899999999999764   2444444


Q ss_pred             -HHHHHHHHHHhCCccCccccceEEEEeeCCCc-CCCCCCCHHHHHH
Q psy15036        127 -EKWLLQIKVMDGALFTHFELQIVFMRGCLELL-QRCREVVTPDQIM  171 (179)
Q Consensus       127 -~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl-~~~r~Vs~~e~~~  171 (179)
                       +.|++.              ...+||.||+|. ..+-..+..||..
T Consensus       118 rq~~~~~--------------~~~~lvinkidrl~~el~lsp~ea~~  150 (887)
T KOG0467|consen  118 RQAWIEG--------------LKPILVINKIDRLITELKLSPQEAYE  150 (887)
T ss_pred             HHHHHcc--------------CceEEEEehhhhHHHHHhcChHHHHH
Confidence             234322              345688899993 3344566666653

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=92.06  E-value=0.55  Score=40.55  Aligned_cols=79  Identities=10%  Similarity=-0.019  Sum_probs=52.2

Q ss_pred             ceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccce
Q psy15036         71 VGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQI  148 (179)
Q Consensus        71 i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~  148 (179)
                      |.+.....++.+. +..+  .||+|++.|..-+-.-+--+|.+++|.|...---    .+-++.+.-..-.+      .|
T Consensus        67 ISVtsSVMqF~Y~-~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE----~qT~KLfeVcrlR~------iP  135 (528)
T COG4108          67 ISVTSSVMQFDYA-DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE----PQTLKLFEVCRLRD------IP  135 (528)
T ss_pred             ceEEeeEEEeccC-CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCcc----HHHHHHHHHHhhcC------Cc
Confidence            3344445566677 7777  9999999998887777888999999999754211    11122222222223      57


Q ss_pred             EEEEeeCCCcCC
Q psy15036        149 VFMRGCLELLQR  160 (179)
Q Consensus       149 iilvGnK~Dl~~  160 (179)
                      |+-..||.|.+.
T Consensus       136 I~TFiNKlDR~~  147 (528)
T COG4108         136 IFTFINKLDREG  147 (528)
T ss_pred             eEEEeecccccc
Confidence            877789999766

>KOG3887|consensus

Probab=91.86  E-value=0.51  Score=37.82  Aligned_cols=65  Identities=9%  Similarity=0.081  Sum_probs=37.4

Q ss_pred             eeCCCchhchh---hhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036         89 FRFPLVSRFLS---LTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        89 wDt~G~e~~~~---~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      ||.+||-.|..   -....|+++-++|+|.|..+. -.+.+.+....+.+...-+    +...+=+..+|.|=
T Consensus        80 ~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvN----p~in~EVfiHKvDG  147 (347)
T KOG3887|consen   80 WDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVN----PNINFEVFIHKVDG  147 (347)
T ss_pred             eecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecC----CCceEEEEEEeccC
Confidence            99999976643   235568999999999997653 2233333333333222111    11344444688883

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=91.83  E-value=1.5  Score=37.54  Aligned_cols=68  Identities=12%  Similarity=-0.044  Sum_probs=40.7

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhh---HHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENS---FKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~S---f~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      .|++|+..|-.-.-.-...||+.|||.|..+.+.   |.-  ..+-.-.+.+..+-       .-+|++-||.|+.+-++
T Consensus        90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi-------~~lIVavNKMD~v~wde  162 (428)
T COG5256          90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI-------KQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             eeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC-------ceEEEEEEcccccccCH
Confidence            8999987775444445678999999999776531   211  11111122233322       24567789999976333

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=91.44  E-value=0.28  Score=35.25  Aligned_cols=94  Identities=13%  Similarity=0.016  Sum_probs=53.7

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc----hhchhhhhhhhcCCcEEEEEEe
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV----SRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~----e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      |+. +|..|+|   +.+.+.+. ..-|..|..++|..+        -..||+|.    .++.........+++++++|-.
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~-~~lykKTQAve~~d~--------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~   73 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGN-DTLYKKTQAVEFNDK--------GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA   73 (148)
T ss_pred             eeEEecccccCchhHHHHhhcc-hhhhcccceeeccCc--------cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence            676 9999999   44444432 344566777666422        11478873    2222222334568999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .++++|--.     ..+.... .       -|+|=|-+|.||.+
T Consensus        74 and~~s~f~-----p~f~~~~-~-------k~vIgvVTK~DLae  104 (148)
T COG4917          74 ANDPESRFP-----PGFLDIG-V-------KKVIGVVTKADLAE  104 (148)
T ss_pred             ccCccccCC-----ccccccc-c-------cceEEEEecccccc
Confidence            988855210     0011111 1       13566679999975

>cd01856 YlqF YlqF

Probab=91.31  E-value=0.28  Score=36.39  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=28.6

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCe-eeeCCCc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-YFRFPLV   94 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-iwDt~G~   94 (179)
                      .++++ +|.++||   ++..+.........++.+.+.....+.++ ..- +|||+|-
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            46887 9999999   55555532211223333434444445554 332 3999983

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=90.95  E-value=0.45  Score=34.70  Aligned_cols=59  Identities=8%  Similarity=0.006  Sum_probs=39.6

Q ss_pred             eeCCCchh----chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         89 FRFPLVSR----FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        89 wDt~G~e~----~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .||+|-..    ...+...|++.+|++|+|.+.++.-+-.....|.+......         ...++|-||.
T Consensus       106 vDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---------~~~i~V~nk~  168 (168)
T PF00350_consen  106 VDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---------SRTIFVLNKA  168 (168)
T ss_dssp             EEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---------SSEEEEEE-G
T ss_pred             EeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---------CeEEEEEcCC
Confidence            89998643    23577888999999999999988655555455544444322         2366777874

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=90.72  E-value=0.51  Score=38.04  Aligned_cols=48  Identities=10%  Similarity=-0.005  Sum_probs=31.8

Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .......+|++++|.|...+.+..+  .++.+..   ..       .|+++|.||+||.+
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~-------kp~IiVlNK~DL~~   62 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GN-------KPRLIVLNKADLAD   62 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CC-------CCEEEEEEccccCC
Confidence            3456789999999999977655433  1222222   22       36778899999954

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK01889 GTPase RsgA; Reviewed

Probab=90.20  E-value=0.63  Score=39.07  Aligned_cols=48  Identities=6%  Similarity=0.048  Sum_probs=33.9

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ...+.|.+++|.++...-+...+.+++..+....         .+++||-||+||.+
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~---------i~piIVLNK~DL~~  156 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESG---------AEPVIVLTKADLCE  156 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC---------CCEEEEEEChhcCC
Confidence            3578899999999975555556677766665532         23356789999965

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=89.58  E-value=1.7  Score=35.90  Aligned_cols=71  Identities=8%  Similarity=0.022  Sum_probs=42.7

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEe
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRG  153 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvG  153 (179)
                      .+... +..+  .|++|+..|-.-.-.=--+.|+.|||.+.++   +++-+.+-     +.++.+-       |-+++.-
T Consensus        69 eyet~-~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqvGv-------p~ivvfl  135 (394)
T COG0050          69 EYETA-NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQVGV-------PYIVVFL  135 (394)
T ss_pred             EEecC-CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhcCC-------cEEEEEE
Confidence            34444 5555  8999998874211112335799999998776   44444321     1222222       4666778


Q ss_pred             eCCCcCCCC
Q psy15036        154 CLELLQRCR  162 (179)
Q Consensus       154 nK~Dl~~~r  162 (179)
                      ||+|+.+.+
T Consensus       136 nK~Dmvdd~  144 (394)
T COG0050         136 NKVDMVDDE  144 (394)
T ss_pred             ecccccCcH
Confidence            999997643

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=89.40  E-value=0.41  Score=38.85  Aligned_cols=48  Identities=10%  Similarity=-0.056  Sum_probs=32.0

Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ....+..+|++++|.|...+.+.++  .++.+..   ..       .|+++|.||+||.+
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~-------kp~iiVlNK~DL~~   65 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GN-------KPRLLILNKSDLAD   65 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CC-------CCEEEEEEchhcCC
Confidence            3456789999999999977655332  2232222   23       36778899999954

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=88.35  E-value=2.3  Score=30.44  Aligned_cols=60  Identities=3%  Similarity=-0.153  Sum_probs=40.0

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      .|+++..  .......+..+|.++++.+.+ ..++..+..-++.+.+....       .++.+|.|+.+-
T Consensus        50 iD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~-------~~~~lVvN~~~~  109 (139)
T cd02038          50 IDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRV-------LNFRVVVNRAES  109 (139)
T ss_pred             EECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCC-------CCEEEEEeCCCC
Confidence            7887643  334456899999999999864 55676666666666544332       355677899864

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=88.19  E-value=1.3  Score=36.89  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhch-------hhhhhhhcCC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SLTTGLYRGT  108 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~~~~~~~~~  108 (179)
                      -.++ +|-+.||   +++.+++..+  ..|..|.-... --.+.++ |-.+  .|++|--.-.       ...-...|+|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~V-PG~l~Y~-ga~IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPV-PGMLEYK-GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccc-cceEeec-CceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            4576 9999999   7777775432  34443321111 1234556 6666  7777532211       1123467899


Q ss_pred             cEEEEEEeCCChhh-HHHHHHHHHH
Q psy15036        109 MGFLLIFDVTNENS-FKDVEKWLLQ  132 (179)
Q Consensus       109 ~~vilvyDit~~~S-f~~l~~w~~~  132 (179)
                      |.+++|.|+....+ .+.+.+-++.
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~  166 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELED  166 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHh
Confidence            99999999997766 5555544444

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=88.04  E-value=1.9  Score=35.99  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=44.0

Q ss_pred             eeCCCchhchhhhhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-CCCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRG---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-CREV  164 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-~r~V  164 (179)
                      .|.+|+|-.-   ...+.+   .|+++||..-+.+-.-...+.-+-.+.-..-.        -+|+|-||.||.. ++..
T Consensus        91 VDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik--------~iiIvQNKIDlV~~E~Al  159 (415)
T COG5257          91 VDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIK--------NIIIVQNKIDLVSRERAL  159 (415)
T ss_pred             eeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccc--------eEEEEecccceecHHHHH
Confidence            5999998653   233343   48899999877653333333333333322222        4678899999954 3333


Q ss_pred             -CHHHHHHHHh
Q psy15036        165 -VTPDQIMFGS  174 (179)
Q Consensus       165 -s~~e~~~~a~  174 (179)
                       +.+|+++|.+
T Consensus       160 E~y~qIk~Fvk  170 (415)
T COG5257         160 ENYEQIKEFVK  170 (415)
T ss_pred             HHHHHHHHHhc
Confidence             3456777754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=86.97  E-value=1.3  Score=35.77  Aligned_cols=51  Identities=14%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV   94 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~   94 (179)
                      .++++ +|.++||   +++.+.........+..|.+.....+.++ ..-. +||+|-
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            47786 9999999   55555432211222333333334455665 4333 999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=86.91  E-value=0.0041  Score=43.02  Aligned_cols=56  Identities=18%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHHHhCC-ccCccccceEEEEeeCCCcCC----CCCCCHHHHHHHHh
Q psy15036        112 LLIFDVTNENSFKDVEK-WLLQIKVMDGA-LFTHFELQIVFMRGCLELLQR----CREVVTPDQIMFGS  174 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~-w~~~i~~~~~~-~~~~~~~~~iilvGnK~Dl~~----~r~Vs~~e~~~~a~  174 (179)
                      +++||+++++||+.+.. |....++.... .      .++++++||.|+..    ++....+++ ++++
T Consensus        36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~~------~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~   97 (124)
T smart00010       36 IDVYDPTSYESFDVVLQCWRVDDRDSADNKN------VPEVLVGNKSDLPILVGGNRDVLEEER-QVAT   97 (124)
T ss_pred             hhhccccccCCCCEEEEEEEccCHHHHHHHh------HHHHHhcCCCCCcEEEEeechhhHhhC-cCCH
Confidence            78999999999999976 87666554322 1      45678899999864    355554444 4444

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1954|consensus

Probab=86.87  E-value=1.3  Score=37.63  Aligned_cols=55  Identities=9%  Similarity=0.030  Sum_probs=35.3

Q ss_pred             chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         97 FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        97 ~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.....+|...+|.+||+||....+-=++.+.-+..++-+..         .+-+|-||.|..+
T Consensus       171 F~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed---------kiRVVLNKADqVd  225 (532)
T KOG1954|consen  171 FTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED---------KIRVVLNKADQVD  225 (532)
T ss_pred             hHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc---------eeEEEeccccccC
Confidence            445778899999999999997665444444444444443221         3345569999543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=86.84  E-value=0.91  Score=36.83  Aligned_cols=53  Identities=11%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCch
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVS   95 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e   95 (179)
                      ..++++ +|.++||   ++..+.+.......++.|.+.....+.++ +.-. +||+|--
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence            357887 9999999   55555433222223344444444455555 4433 9999973

>KOG3929|consensus

Probab=86.15  E-value=3.1  Score=33.78  Aligned_cols=79  Identities=14%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             eeEEE-EeCCCCc-eeEeeeccCCCcccCcceeeeeEEEEEecCCCe---e---eeCCCchhchhhhhhhhc----CCcE
Q psy15036         43 NFGTQ-LGRRGIP-LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR---Y---FRFPLVSRFLSLTTGLYR----GTMG  110 (179)
Q Consensus        43 ~~Kiv-lG~~gvG-~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~---i---wDt~G~e~~~~~~~~~~~----~~~~  110 (179)
                      .+-|+ .|+.++- ++............||...++.- --... +..   +   |..+|...-..+..-=++    ..-.
T Consensus        45 E~~I~~~Gn~~~tt~I~~~FdR~e~~~~ptlaLEYty-gRR~~-g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~s  122 (363)
T KOG3929|consen   45 EFFIGSKGNGGKTTIILRCFDRDEPPKPPTLALEYTY-GRRAK-GHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFS  122 (363)
T ss_pred             eeEEEEecCCceeEeehhhcCcccCCCCCceeeeeeh-hhhcc-CCCchhHHHHHHhcCCccHHHHhcCcccccchhhhh
Confidence            45566 8988887 33333333344456677666531 11223 332   2   998887655443322111    2456


Q ss_pred             EEEEEeCCChhhH
Q psy15036        111 FLLIFDVTNENSF  123 (179)
Q Consensus       111 vilvyDit~~~Sf  123 (179)
                      +||+.|+++++-|
T Consensus       123 lIL~LDls~p~~~  135 (363)
T KOG3929|consen  123 LILVLDLSKPNDL  135 (363)
T ss_pred             heeeeecCChHHH
Confidence            7899999999665

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=85.70  E-value=4.2  Score=30.74  Aligned_cols=66  Identities=12%  Similarity=-0.022  Sum_probs=48.0

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      ...|-|+++.|++++-|++.++.=+..+.......       .+.++++-...++.-.|+.++..++|.+.-+
T Consensus        63 prIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-------KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~  128 (176)
T PF11111_consen   63 PRIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-------KVCFLATNAGRESHCSVHPNEVRKLAATYNS  128 (176)
T ss_pred             ceeEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-------ceEEEEcCCCcccccccCHHHHHHHHHHhCC
Confidence            35799999999999999999887766665333222       3444555555566678999999999987543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PTZ00258 GTP-binding protein; Provisional

Probab=85.09  E-value=3.9  Score=34.91  Aligned_cols=30  Identities=10%  Similarity=0.006  Sum_probs=19.8

Q ss_pred             eeCCCchhc----hhhhhh---hhcCCcEEEEEEeCC
Q psy15036         89 FRFPLVSRF----LSLTTG---LYRGTMGFLLIFDVT  118 (179)
Q Consensus        89 wDt~G~e~~----~~~~~~---~~~~~~~vilvyDit  118 (179)
                      .|++|-.+-    ..+...   .++++|++++|.|..
T Consensus        90 vDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         90 TDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             EECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            899995321    122223   356799999999963

>cd01858 NGP_1 NGP-1

Probab=84.26  E-value=1.5  Score=31.85  Aligned_cols=50  Identities=12%  Similarity=0.090  Sum_probs=26.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL   93 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G   93 (179)
                      ...|. +|.+|||   ++..+.........++-|.......+.++ +..+ .||+|
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM-KRIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC-CCEEEEECcC
Confidence            45675 9999999   55555432222223333332222333444 3333 89988

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1490|consensus

Probab=83.99  E-value=6.1  Score=34.93  Aligned_cols=54  Identities=13%  Similarity=0.030  Sum_probs=37.8

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036        108 TMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus       108 ~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      -.+|+++-|++..-  |...--+.+..|+....++       |.|+|.||+|+-.--.++.+.
T Consensus       248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK-------~~IlvlNK~D~m~~edL~~~~  303 (620)
T KOG1490|consen  248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK-------VTILVLNKIDAMRPEDLDQKN  303 (620)
T ss_pred             hhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC-------ceEEEeecccccCccccCHHH
Confidence            35677888998763  4444456777777777665       778889999997655566554

>smart00053 DYNc Dynamin, GTPase

Probab=83.93  E-value=7  Score=31.03  Aligned_cols=63  Identities=11%  Similarity=-0.028  Sum_probs=35.7

Q ss_pred             eeCCCchh-------------chhhhhhhhcCC-cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         89 FRFPLVSR-------------FLSLTTGLYRGT-MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        89 wDt~G~e~-------------~~~~~~~~~~~~-~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      .|++|-..             ...+...|+++. +.+++|.|.+.--+=..   .++.++...+..      .++++|.|
T Consensus       130 IDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d---~l~ia~~ld~~~------~rti~ViT  200 (240)
T smart00053      130 IDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD---ALKLAKEVDPQG------ERTIGVIT  200 (240)
T ss_pred             EeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh---HHHHHHHHHHcC------CcEEEEEE
Confidence            78888642             234667788854 47777777543211111   122222222232      47788999


Q ss_pred             CCCcCC
Q psy15036        155 LELLQR  160 (179)
Q Consensus       155 K~Dl~~  160 (179)
                      |+|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0458|consensus

Probab=83.38  E-value=9.5  Score=34.16  Aligned_cols=63  Identities=11%  Similarity=0.072  Sum_probs=38.0

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHH-------HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKD-------VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~-------l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .|.+|+..|-.-.-.=...+|+.+||.|.+ ...|+.       ++.-...++... -       --+|++-||.|+.+
T Consensus       260 iDaPGhkdFi~nmi~g~sqaD~avLvvd~s-~~~FE~gfd~~gQtrEha~llr~Lg-i-------~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  260 IDAPGHKDFIPNMISGASQADVAVLVVDAS-TGEFESGFDPGGQTREHALLLRSLG-I-------SQLIVAINKMDLVS  329 (603)
T ss_pred             ecCCCccccchhhhccccccceEEEEEECC-cchhhhccCCCCchHHHHHHHHHcC-c-------ceEEEEeecccccC
Confidence            899998877543333455789999999965 344433       122222222222 2       24567789999854

>KOG1424|consensus

Probab=83.33  E-value=2.5  Score=37.25  Aligned_cols=46  Identities=13%  Similarity=0.083  Sum_probs=30.8

Q ss_pred             hcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..+|+||.+.|.-|+--|..  |..+++++.   +.+       ..+|+-||.||..
T Consensus       172 lErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K-------~~~LLvNKaDLl~  219 (562)
T KOG1424|consen  172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSK-------ANVLLVNKADLLP  219 (562)
T ss_pred             HhhcceEEEEeecCCccccCChhHHHHHhccc---ccc-------ceEEEEehhhcCC
Confidence            457999999999999966644  344444433   222       3456679999954

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.61  E-value=4.7  Score=39.15  Aligned_cols=49  Identities=16%  Similarity=0.117  Sum_probs=32.5

Q ss_pred             cCCcEEEEEEeCCCh----hhH-----HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        106 RGTMGFLLIFDVTNE----NSF-----KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       106 ~~~~~vilvyDit~~----~Sf-----~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..||||+..|+.+.    ...     ..|..=+.++++.-.-.      .|+.|+.||.|+-.
T Consensus       213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~------~PVYl~lTk~Dll~  270 (1188)
T COG3523         213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR------LPVYLVLTKADLLP  270 (1188)
T ss_pred             CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC------CceEEEEecccccc
Confidence            458999999986553    112     12344455666555554      78999999999843

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=82.09  E-value=1.7  Score=32.60  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=28.6

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL   93 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G   93 (179)
                      .++++ +|.++||   ++..+.+.......+..|.+.....+.++ ..-. .||+|
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence            47886 9999999   55555543222233333433333444555 4333 89988

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1161 Predicted GTPases [General function prediction only]

Probab=81.16  E-value=1.7  Score=36.05  Aligned_cols=60  Identities=3%  Similarity=-0.089  Sum_probs=42.6

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |=.....++...........|.++-|.|.-++.+..+     ..+.+....+       +.++|.||+||..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k-------~~i~vlNK~DL~~   75 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEK-------PKLLVLNKADLAP   75 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccC-------CcEEEEehhhcCC
Confidence            4433345666677778999999999999999877554     3344444443       4478899999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-08
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-08
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		6e-08
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-08
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-07
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-07
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-07
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-07
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-07
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-07
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-06
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-06
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-06
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-06
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-06
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-05
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-05
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-05
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-05
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-05
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-05
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-05
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-05
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-05
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-05
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-05
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-05
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-05
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-05
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-05
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-05
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-05
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-05
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		5e-05
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-05
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-05
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-05
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-05
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-05
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-04
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-04
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-04
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-04
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-04
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-04
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-04
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-04
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-04
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-04
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-04
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-04

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 42  TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 101
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 102 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 145

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   +V   T ++  + +    + R+ ++T+  YRG +G LL+FD+T   ++  V
Sbjct: 57  TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 116
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQ 176
           E+WL +       L+ H E  IV M  G    L + REV T +  MF    
Sbjct: 117 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 122

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 13/79 (16%)
Query: 70  TVGIVFPAISVTY-SIGP-----RYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y + GP     R  R  L       + RF SLTT  +R  MGFLL+FD
Sbjct: 43  TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
           +TNE SF +V  W+ Q+++
Sbjct: 103 LTNEQSFLNVRNWISQLQM 121

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 104

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 70  TVGIVFPAISVTYS----IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKD 125
           T+G+ F   S+       I  + +      R+ ++T+  YRG +G LL++D+T +NSF++
Sbjct: 39  TIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFEN 98
Query: 126 VEKWLLQIK 134
           +EKWL +++
Sbjct: 99  IEKWLKELR 107

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            R+ ++TT  YRG MGFLL++D+ N+ SF  V+ W  QIK
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 94  VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           + R+ ++TT  YRG  GF+L +D+TNE SF  V+ W  QIK
Sbjct: 67  LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIK 107

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            RF ++TT  YRG MG +L++D+TNE SF ++  W+  I+
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            RF ++TT  YRG MG +L++D+TNE SF ++  W+  I+
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 105

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70  TVGIVFPAISVTYSI-GP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y+  GP     + F+  L         RF SLTT  +R  MGFLL+FD
Sbjct: 57  TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116
Query: 117 VTNENSFKDVEKWLLQIKV 135
           +T++ SF +V  W+ Q++ 
Sbjct: 117 LTSQQSFLNVRNWMSQLQA 135

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 70  TVGIVFPAISVTYS------IGPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y          + F+  L       + RF SLTT  +R  MGFLL+FD
Sbjct: 43  TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
           +T++ SF +V  W+ Q++ 
Sbjct: 103 LTSQQSFLNVRNWMSQLQA 121

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 70  TVGIVFPAISVTYSI------GPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y          + F+  L       + RF SLTT  +R  MGFLL+FD
Sbjct: 43  TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
           +T++ SF +V  W+ Q++ 
Sbjct: 103 LTSQQSFLNVRNWMSQLQA 121

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+GI F   +V   I  +  +  L       RF ++TT  YRG MG +L++DVT+E +F 
Sbjct: 52  TIGIDFKIKTV--DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 109
Query: 125 DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169
           ++++W   +         + E Q++ +    ++  R   VVT DQ
Sbjct: 110 NIKQWFKTVNE-----HANDEAQLLLVGNKSDMETR---VVTADQ 146

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+GI F   +V   I  +  +  L       RF ++TT  YRG MG +L++DVT+E +F 
Sbjct: 39  TIGIDFKIKTV--DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 96
Query: 125 DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169
           ++++W   +         + E Q++ +    ++  R   VVT DQ
Sbjct: 97  NIKQWFKTVNE-----HANDEAQLLLVGNKSDMETR---VVTADQ 133

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +    + R+ ++T+  YRG +G LL++D+    ++++V
Sbjct: 40  TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 99
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFG 173
           E+WL +++        H +  IV M  G    L+  R V T +   F 
Sbjct: 100 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 140

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +    + R+ ++T+  YRG +G LL++D+    ++++V
Sbjct: 61  TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 120
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGS 174
           E+WL +++        H +  IV M  G    L+  R V T +   F  
Sbjct: 121 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154
            RF ++TT  YRG MG +L++D+T+E +F ++++W   +         + E Q++ +   
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE-----HANDEAQLLLVGNK 117
Query: 155 LELLQRCREVVTPDQ 169
            ++  R   VVT DQ
Sbjct: 118 SDMETR---VVTADQ 129

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +      R+ ++T+  YRG +G LL++D+    ++++V
Sbjct: 61  TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV 120
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGS 174
           E+WL +++        H +  IV M  G    L+  R V T +   F  
Sbjct: 121 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 59  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 97

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 123

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +      R+ ++T+  YRG +G LL++D+    ++++V
Sbjct: 52  TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV 111
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFG 173
           E+WL +++        H +  IV M  G    L+  R V T +   F 
Sbjct: 112 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 152

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +    + R+ ++T+  YRG +G LL++D+    ++++V
Sbjct: 43  TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 102
Query: 127 EKWLLQIKVMDGALFTHFELQIVF-MRGCLELLQRCREVVTPDQIMFGS 174
           E+WL +++        H +  IV  + G    L+  R V T +   F  
Sbjct: 103 ERWLKELR-------DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAE 144

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +    + R+ ++T+  YRG +G LL++D+    ++++V
Sbjct: 37  TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 96
Query: 127 EKWLLQIKVMDGALFTHFELQIVF-MRGCLELLQRCREVVTPDQIMFG 173
           E+WL +++        H +  IV  + G    L+  R V T +   F 
Sbjct: 97  ERWLKELR-------DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFA 137

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ SF +V++WL +I
Sbjct: 58  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 96

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT+ +SF +V++W+ +I
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI 107

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 70  TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   S+     +I  + +      R+  +T+  YRG +G LL++D+    ++++V
Sbjct: 37  TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV 96
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQS 177
           E+WL +++        H +  IV M  G    L+  R V T +   F    +
Sbjct: 97  ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN 141

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ S+ +V++WL +I
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 107

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG  G ++++DVT++ S+ +V++WL +I
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 107

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 70  TVGIVFPAISVTYSI------GPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y          + F+  L       + RF SLTT  +R   GFLL FD
Sbjct: 43  TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
           +T++ SF +V  W  Q++ 
Sbjct: 103 LTSQQSFLNVRNWXSQLQA 121

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 64  TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
           +G++  T+G+ F   +V  +   +  + +      RF ++T+  YRGT G ++++DVT+ 
Sbjct: 35  SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA 94
Query: 121 NSFKDVEKWLLQIK 134
            SF +V++WL +I 
Sbjct: 95  ESFVNVKRWLHEIN 108

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+GI F   +V   I  +  +  L       RF ++TT  YRG  G +L++DVT+E +F 
Sbjct: 35  TIGIDFKIKTV--DINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFT 92
Query: 125 DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169
           ++++W   +         + E Q++ +    +   R   VVT DQ
Sbjct: 93  NIKQWFKTVNE-----HANDEAQLLLVGNKSDXETR---VVTADQ 129

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 70  TVGIVFPAISVTYSI------GPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
           TVGI F    V Y          + F+  L       + RF SLTT  +R   GFLL FD
Sbjct: 43  TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
           +T++ SF +V  W  Q++ 
Sbjct: 103 LTSQQSFLNVRNWXSQLQA 121

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF ++T+  YRG+ G ++++DVT++ SF  V+ WL +I
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 119

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF ++T+  YRG+ G ++++DVT++ SF  V+ WL +I
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
           RF ++T+  YRG+ G ++++DVT++ SF  V+ WL +I
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154
            RF ++TT  YRG  G +L++D+T+E +F ++++W   +         + E Q++ +   
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNE-----HANDEAQLLLVGNK 117
Query: 155 LELLQRCREVVTPDQ 169
            +   R   VVT DQ
Sbjct: 118 SDXETR---VVTADQ 129

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
            RF S+T   YR     LL++DVTN+ SF +++ WL +I
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+G+ F   S   ++G +Y +  +     + RF S+T   YRG  G LL++D+T+  ++ 
Sbjct: 40  TIGVEFG--SKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYN 97
Query: 125 DVEKWLLQIKVM 136
            +  WL   +++
Sbjct: 98  ALTNWLTDARML 109

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 65  GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
            T+  T+GI F  +S T  +  R  R  L     + RF SL     R +   ++++D+TN
Sbjct: 40  NTYQATIGIDF--LSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
            NSF+   KW+  ++   G+
Sbjct: 98  VNSFQQTTKWIDDVRTERGS 117

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+G+ F   S   ++G +Y +  +       RF S+T   YRG  G LL++D+T+  ++ 
Sbjct: 42  TIGVEFG--SKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 99
Query: 125 DVEKWLLQIKVM 136
            +  WL   +++
Sbjct: 100 ALTNWLTDARML 111

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+G  F   S T ++     +F +       R+ SL    YRG    +++FDVTN+ SF+
Sbjct: 44  TIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFE 101
Query: 125 DVEKWLLQIKVM 136
             +KW+ +++  
Sbjct: 102 RAKKWVQELQAQ 113

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIV 149
            RF S+T+  YR   G +L++D+T + +F D+ KW+   K++D       EL +V
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM---KMIDKYASEDAELLLV 137

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 70  TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
           T+G+ F   S   ++G +Y +  +       RF S+T   YRG  G LL++D+T+  ++ 
Sbjct: 43  TIGVEFG--SKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 100
Query: 125 DVEKWLLQIKVM 136
            +  WL   +++
Sbjct: 101 ALTNWLTDARML 112

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 15/68 (22%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 70  TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
           T+G+ F   ++      I  + +    + R+ ++T+  YRG +G L+++D++  +S+++ 
Sbjct: 42  TIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENC 101
Query: 127 EKWLLQIK 134
             WL +++
Sbjct: 102 NHWLTELR 109

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
            RF +L    YR + G +L++D+T+E+SF+ V+ W+ +++ M G
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 123

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 65  GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
            T+  T+GI F  +S T  +  R  R  L       RF SL     R +   ++++D+TN
Sbjct: 33  NTYQATIGIDF--LSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 90
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
            NSF+   KW+  ++   G+
Sbjct: 91  VNSFQQTTKWIDDVRTERGS 110

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
            RF +L    YR + G +L++D+T+E+SF+ V+ W+ +++ M G
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 95  SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
            RF +L    YR + G +L++D+T+E+SF+ V+ W+ +++ M G
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	8e-13
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	9e-13
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	5e-12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-12
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	7e-12
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-12
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-12
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	8e-12
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	9e-12
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-11
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-11
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-11
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-11
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-11
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-11
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-11
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-11
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-11
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-11
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-11
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-11
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	6e-11
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-11
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-11
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	9e-11
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-10
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-10
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-10
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-10
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-10
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-10
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-10
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-10
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-10
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	6e-10
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-10
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-09
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-09
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-09
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-09
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-09
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-08
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-08
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-08
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-08
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-08
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-08
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-08
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-08
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-08
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-08
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-08
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-08
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-08
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-08
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-07
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-07
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-07
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-07
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-07
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	7e-07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-05
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-04

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SLTT  +R  MGFLL+FD+TNE SF +V  W+ Q++
Sbjct: 82  RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SLTT  +R  MGFLL+FD+T++ SF +V  W+ Q++
Sbjct: 96  RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++TT  YRG MGFLL++D+ N+ SF  V+ W  QIK
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++TT  YRG MG +L++D+TNE SF ++  W+  I+
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 107

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL    YRG    +L++DVTN +SF++++ W  +  
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 108

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++TT  YRG MGF+L++D+TNE SF  V+ W  QIK
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 122

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 15/39 (38%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++TT  YRG MG +L++D+T+E +F ++++W   + 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN 102

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 60.4 bits (147), Expect = 8e-12
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL    YRG    +L+FDVT  N+FK ++ W  +  
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL 107

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T   YR     LL++DVTN+ SF +++ WL +I 
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH 110

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T+  YRGT G ++++DVT+  SF +V++WL +I 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN 108

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++TT  YRG MG +L++DVT+E +F ++++W   + 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN 119

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T+  YR   G +L++D+T + +F D+ KW+  I 
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID 125

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFM 151
               +      G  G LL++D+TN  SF+++E W   +K     +    E Q +  
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVK----KVSEESETQPLVA 119

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T+  YRG+ G ++++DVT++ SF  V+ WL +I 
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 107

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL T  YRG+   LL F V +  SF+++  W  +  
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 106

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T+  YRG  G ++++DVT++ SF +V++WL +I 
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 132

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+    +R   G LL++DVT E SF ++ +W+  I+
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIE 127

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF +LT   YRG  G +L++DVT  ++F  ++ WL +++
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 114

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 16/39 (41%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T+  YRG  G ++++DVT++ SF +V++WL +I 
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 115

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T   YR   G +L +D+T  +SF  V  W+  ++
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 128

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            F S+T   YRG  G LL++D+T   +F  +  WL   +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFM 151
            +    +  + G    +L+FDV++  SF+  + W   +K    +     E  +  +
Sbjct: 85  LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK----SARPDRERPLRAV 136

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T   YR     +L +D+T E SF+ + +WL +I+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 125

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 57.1 bits (139), Expect = 6e-11
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            F ++T   YRG    +L+F  T+  SF+ +  W  ++ 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV 104

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           +F  L  G Y      +++FDVT+  ++K+V  W   + 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV 114

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           +   L    Y G  G +L FDVT+  + +++ +W+ + +
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++T+  YRG +G LL+FD+T   ++  VE+WL ++ 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY 124

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T   YRG  G LL++D+T+  ++  +  WL   +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR 124

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 13/39 (33%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+  +T+  YRG +G LL++D+    ++++VE+WL +++
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF S+T   YRG  G LL++D+T+  ++  +  WL   +
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 109

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 11/39 (28%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++T+  YRG +G L+++D++  +S+++   WL +++
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR 112

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF ++T   YRG  G L+++D+T  +++  +  WL   +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 114

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ S+    YRG    +++FD++N N+    + W+ Q+K
Sbjct: 105 RYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK 143

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 13/39 (33%), Positives = 29/39 (74%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ ++T+  YRG +G LL++D+    ++++VE+WL +++
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 14/39 (35%), Positives = 28/39 (71%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF +L    YR + G +L++D+T+E+SF+ V+ W+ +++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 105

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL     R +   ++++D+TN NSF+   KW+  ++
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 115

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 96  RF-LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF  S+    YR     + ++D+TN  SF  +  W+ + K
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL     R +   ++++D+TN NSF    KW+  ++
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVR 113

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 14/39 (35%), Positives = 27/39 (69%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL    YRG+   ++++D+T ++SF  ++KW+ ++K
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK 122

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 11/39 (28%), Positives = 25/39 (64%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF +L    YRG+   ++++D+T E +F  ++ W+ +++
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR 105

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 96  RFLSLTTGLY-RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
                      +    FL++F VT+  SF  V + LL+++
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 123

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ SL    YRG    ++++D+TNE SF   + W+ +++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           R+ SL    YRG    +++FDVTN+ SF+  +KW+ +++
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQ 111

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            F ++     R   GFLL+F + +  SF +V K   QI 
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 107

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            + ++    +R   GFL +F +T   SF     +  QI 
Sbjct: 78  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 96  RFLSLTTGLY-RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
                      +    FL++F VT+  SF  V + LL+++
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 102

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            + ++     R   GFL +F + N  SF D+  +  QIK
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            + ++    +R   GFL +F +T   SF     +  QI 
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            + ++     R   GFL +F + N  SF+D+ ++  QIK
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            F ++     R   GFL+++ VT++ SF+ V+++   I 
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL 116

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            + ++     R   GFL +F + N  SF+D+  +  QIK
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 6/39 (15%), Positives = 18/39 (46%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
               L          +++++ VT++ SF+   +  +Q++
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            +  L      G  G++L++ VT+ +SF+ +E    ++ 
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            + ++    +R   GFL +F +T   SF     +  QI 
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            +            G++L++ VT+  SF+ ++    ++ 
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           +F S+     +   GF+L++ + N+ SF+D++    QI 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 7/39 (17%), Positives = 19/39 (48%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           +F ++          F+L++ +T+  S ++++    QI 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 8/39 (20%), Positives = 18/39 (46%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           +F ++          F+L+F VT++ S +++      I 
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           +F ++     +   GF L++ +T +++F D++    QI 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
                  + +F + +E SF+ V  + L++
Sbjct: 83  AAWVDAVVFVFSLEDEISFQTVYNYFLRL 111

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENS-FKDVEKWLLQIK 134
            F S           +L ++D++   +    ++ WL  IK
Sbjct: 68  EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK 107

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
                  + +F + +ENSF+ V +   Q+ 
Sbjct: 70  SGWADAVIFVFSLEDENSFQAVSRLHGQLS 99

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 5/30 (16%), Positives = 17/30 (56%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            +    +L+++ +T+  SF+   +  +Q++
Sbjct: 109 MQVGDAYLIVYSITDRASFEKASELRIQLR 138

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 5/30 (16%), Positives = 17/30 (56%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            +    +L+++ +T+  SF+   +  +Q++
Sbjct: 78  MQVGDAYLIVYSITDRASFEKASELRIQLR 107

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 96  RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
           RF SL    YR     L+++DVT   SF     W+ ++ 
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELH 102

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 4/30 (13%), Positives = 17/30 (56%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            +G   +++++ + +  SF+   +  +Q++
Sbjct: 75  LQGGSAYVIVYSIADRGSFESASELRIQLR 104

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
            R   GF+L++D+T+  SF++V      + 
Sbjct: 96  MRWGEGFVLVYDITDRGSFEEVLPLKNILD 125

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
                 FL+++ V +  SF     +L  + 
Sbjct: 89  LNWAHAFLVVYSVDSRQSFDSSSSYLELLA 118

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
           Y  +   LL F V N  SF ++  KW  +IK
Sbjct: 92  YADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.93
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.92
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.91
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.91
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.91
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.91
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.91
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.91
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.9
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.9
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.9
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.9
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.9
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.9
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.9
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.9
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.9
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.89
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.89
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.89
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.89
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.89
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.89
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.89
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.88
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.88
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.88
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.88
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.88
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.87
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.87
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.87
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.87
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.87
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.87
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.87
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.87
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.86
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.86
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.85
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.85
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.85
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.85
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.85
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.85
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.84
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.84
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.83
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.83
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.83
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.83
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.82
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.82
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.81
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.81
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.81
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.8
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.8
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.8
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.79
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.79
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.79
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.66
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.78
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.78
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.72
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.71
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.7
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.66
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.65
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.65
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.64
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.63
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.62
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.62
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.62
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.61
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.6
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.59
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.59
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.58
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.57
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.56
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.55
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.52
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.48
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.44
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.43
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.41
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.41
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.41
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.41
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.4
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.39
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.39
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.38
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.36
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.35
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.28
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.27
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.27
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.26
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.24
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.24
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.24
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.23
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.23
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.21
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.21
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.2
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.16
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.13
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.13
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.12
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.11
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.11
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.1
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.1
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.08
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.07
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.05
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.04
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.04
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.03
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.02
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.02
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.02
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.0
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.98
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.98
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.97
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.96
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.95
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.95
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.94
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.94
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.92
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.87
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.87
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.8
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.78
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.75
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.73
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.7
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.67
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.41
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.34
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.33
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.31
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.3
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.21
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.2
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.9
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.73
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.72
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.55
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.8
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.67
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.65
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.4
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.08
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.04
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.04
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	95.41
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.08
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.98
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.76
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	93.62
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.29
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	91.79
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	91.67
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	87.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	86.56
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	85.13
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	84.38
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	83.87

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.97  E-value=6.3e-32  Score=209.59  Aligned_cols=130  Identities=22%  Similarity=0.305  Sum_probs=109.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..|||+ ||++|||   ++.++. +.|.+.|.||+|.++..+.+.++ +..+    |||+|+++|+.+++.||+++++++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~-~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECS-SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEec-ceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            468998 9999999   555554 77899999999999999999888 8877    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|||+++++||+++..|+..+++....+      +|++|||||+||.++|+|+.+|+++||++.+.
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~------~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~  150 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSD------VIIMLVGNKTDLADKRQVSIEEGERKAKELNV  150 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTS------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCC------CeEEEEeeccchHhcCcccHHHHhhHHHHhCC
Confidence            9999999999999999999999887766      79999999999999999999999999998753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.93  E-value=2.7e-25  Score=165.63  Aligned_cols=133  Identities=26%  Similarity=0.409  Sum_probs=97.6

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      +++++.+||+ +|+.|||   ++..+. ..+...+.||++.++..+.+.++ +..+    ||++|+++|..++..+++++
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   81 (183)
T 2fu5_C            3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGA   81 (183)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-TEEEEEEEEEC---------CCTTTTTC
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence            3567889998 9999999   666665 45667788999998888888888 7544    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+.+....+      .|++|||||+|+.++|.++.+++++++++.+
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  144 (183)
T 2fu5_C           82 MGIMLVYDITNEKSFDNIRNWIRNIEEHASAD------VEKMILGNKCDVNDKRQVSKERGEKLALDYG  144 (183)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEEC--CCSCCCSCHHHHHHHHHHHT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECccCCccCcCCHHHHHHHHHHcC
Confidence            99999999999999999999999998875544      6899999999999889999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=5.5e-25  Score=167.50  Aligned_cols=133  Identities=22%  Similarity=0.410  Sum_probs=106.9

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      +++++.+||+ +|+.+||   +++++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..+++++
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            4567789997 9999999   666655 55677888999988888888888 7544    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+++..|+..+.+....+      .|++|||||+|+.++|+++.+++++++++.+
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~  165 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSN------IVQLLIGNKSDLSELREVSLAEAQSLAEHYD  165 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999999998876544      6899999999999889999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.5e-24  Score=165.63  Aligned_cols=133  Identities=26%  Similarity=0.431  Sum_probs=116.7

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      +++++.+||+ +|+.|||   +++++. ..+...+.+|++.++..+.+.++ +..+    |||+|+++|..+...+++++
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            3567899997 9999999   666555 55677889999999988888888 7654    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|+|||+++++||+++..|+..+.+.....      .|++|||||+|+.++|+++.++++++++..+
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~  162 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNK------VITVLVGNKIDLAERREVSQQRAEEFSEAQD  162 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence            99999999999999999999999998876554      6899999999999889999999999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.91  E-value=8.9e-24  Score=160.63  Aligned_cols=132  Identities=25%  Similarity=0.408  Sum_probs=116.1

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ++++.+||+ +|+.|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..+++++|
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSYYRGSH   82 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence            567889998 9999999   666655 55677888999999888888888 7644    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||+.+..|+..+.......      .|++|||||+|+.++|.++.+++.+++++.+
T Consensus        83 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  144 (206)
T 2bcg_Y           83 GIIIVYDVTDQESFNGVKMWLQEIDRYATST------VLKLLVGNKCDLKDKRVVEYDVAKEFADANK  144 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence            9999999999999999999999998876554      6899999999999889999999999997654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.91  E-value=9.9e-24  Score=157.30  Aligned_cols=132  Identities=23%  Similarity=0.416  Sum_probs=115.4

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ++++.+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   84 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-GKYVKLQIWDTAGQERFRSVTRSYYRGAA   84 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence            567889998 9999999   665555 55667788999988888888887 7544    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||+.+..|+..+......+      .|+++||||+|+.+.+.++.+++.+++++..
T Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  146 (186)
T 2bme_A           85 GALLVYDITSRETYNALTNWLTDARMLASQN------IVIILCGNKKDLDADREVTFLEASRFAQENE  146 (186)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            9999999999999999999999998876554      6899999999998889999999999988754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.91  E-value=1.1e-23  Score=158.47  Aligned_cols=133  Identities=24%  Similarity=0.398  Sum_probs=111.4

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      +...+.+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++++
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-GKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-TEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            3556789998 9999999   666655 55667788899988888888888 7544    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|+|||+++++||+.+..|+..+.+....+      .|++||+||+|+.++++++.+++++++++.+
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  157 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSN------MVIMLIGNKSDLESRRDVKREEGEAFAREHG  157 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccCCccccCHHHHHHHHHHcC
Confidence            99999999999999999999999998876554      6899999999999889999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=2.6e-23  Score=154.24  Aligned_cols=137  Identities=23%  Similarity=0.341  Sum_probs=113.4

Q ss_pred             ccccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhh
Q psy15036         34 MTAAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGL  104 (179)
Q Consensus        34 m~~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~  104 (179)
                      |.........+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+
T Consensus         3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~   81 (181)
T 2efe_B            3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMY   81 (181)
T ss_dssp             -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGGGGGTHHH
T ss_pred             ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhhhhhhHHH
Confidence            34444556789997 9999999   555555 55667778999988888888887 6554    9999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++++|++|+|||++++.||+.+..|+..+.+....+      .|+++|+||+|+.+.++++.+++++++++..
T Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (181)
T 2efe_B           82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN------MVMALAGNKSDLLDARKVTAEDAQTYAQENG  148 (181)
T ss_dssp             HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCcccccccCCHHHHHHHHHHcC
Confidence            999999999999999999999999999998876544      6899999999998889999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.6e-23  Score=157.89  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=114.3

Q ss_pred             ccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036         36 AAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR  106 (179)
Q Consensus        36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~  106 (179)
                      +.+.++..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHSLAPMYYR   94 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHhhhHHhhc
Confidence            445677899997 9999999   666665 44567888999998887888877 6654    999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      .++++|+|||+++++||+.+..|+..+.+.....      .|+++|+||+|+.++++++.+++++++++..
T Consensus        95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~------~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~  159 (192)
T 2fg5_A           95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN------IVMAIAGNKCDLSDIREVPLKDAKEYAESIG  159 (192)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHTTT
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            9999999999999999999999999998876544      6899999999998889999999999998654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.91  E-value=1.8e-23  Score=154.45  Aligned_cols=133  Identities=21%  Similarity=0.423  Sum_probs=115.3

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ...+..+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTRSYYRGA   88 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-TEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCChHhhhhHHHHhccC
Confidence            3556789998 9999999   666655 45677788999988888888887 6544    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+......+      .|+++|+||+|+.++++++.+++++++++..
T Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (179)
T 1z0f_A           89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPN------TVIILIGNKADLEAQRDVTYEEAKQFAEENG  151 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999999998876554      6899999999999889999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.91  E-value=2.6e-23  Score=157.55  Aligned_cols=132  Identities=27%  Similarity=0.400  Sum_probs=115.0

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .+++.+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..++..+++++|
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-DKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            567789998 9999999   665555 45667788999988887888777 6554    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||+.+..|+..+......+      .|+++||||+|+.+.+.++.+++++++++.+
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  144 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDN------AQVLLVGNKCDMEDERVVSSERGRQLADHLG  144 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSS------CEEEEEEECTTCTTSCCSCHHHHHHHHHHHT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccCcccccCHHHHHHHHHHCC
Confidence            9999999999999999999999998876444      6899999999999889999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.4e-24  Score=162.14  Aligned_cols=133  Identities=29%  Similarity=0.403  Sum_probs=116.7

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      +.+++.+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++++
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            4567899998 9999999   666655 55677888999988888888877 6554    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+......+      .|++|||||+|+.+++.++.++++.++++.+
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  159 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDN------AQVILVGNKCDMEEERVVPTEKGQLLAEQLG  159 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence            99999999999999999999999999876554      7899999999999989999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.91  E-value=9.9e-24  Score=154.82  Aligned_cols=131  Identities=23%  Similarity=0.364  Sum_probs=107.5

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      .++.+||+ +|+.|||   +++.+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|+
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   81 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-GKRVNLAIWDTAGQERFHALGPIYYRDSNG   81 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-SCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence            45689997 9999999   665555 55667788999998888888888 7765    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+.+..|+..+.+....+      .|+++|+||+|+.++++++.+++++++++.+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNE------ICLCIVGNKIDLEKERHVSIQEAESYAESVG  142 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGG------SEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CeEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            999999999999999999999998776544      6899999999999889999999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.91  E-value=2.1e-23  Score=156.53  Aligned_cols=134  Identities=28%  Similarity=0.368  Sum_probs=115.5

Q ss_pred             cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG  107 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~  107 (179)
                      ....++.+||+ +|+.+||   +++.+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++.
T Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~   94 (189)
T 2gf9_A           16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-DKRIKLQIWDTAGQERYRTITTAYYRG   94 (189)
T ss_dssp             CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-TEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred             CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-CeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence            34566789998 9999999   666665 45667788999988877777777 6554    9999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|++|+|||+++++||+.+..|+..+.+....+      .|+++|+||+|+.+++.++.+++++++++.+
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  158 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDN------AQVILVGNKCDLEDERVVPAEDGRRLADDLG  158 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence            999999999999999999999999998876444      6899999999999889999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=159.85  Aligned_cols=132  Identities=20%  Similarity=0.167  Sum_probs=107.5

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh-hhhhhhcCC
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS-LTTGLYRGT  108 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~-~~~~~~~~~  108 (179)
                      ..+..+||+ +|++|||   +++++. ..+...+.++.+.++..+.+.++ +..+    ||++|++++.. ++..|++++
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD-KEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEET-TEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEEC-CEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            445689997 9999999   665554 22333455677777777888888 7765    99999998875 888999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCC-ccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGA-LFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~-~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|+|||+++++||+++..|+.++.+.... +      .|++|||||+|+.++|.++.++++++|++..
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~  161 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD------LPVILVGNKSDLARSREVSLEEGRHLAGTLS  161 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEeechhccccCCcCHHHHHHHHHHhC
Confidence            9999999999999999999999999876542 3      6889999999999889999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.91  E-value=2.7e-23  Score=156.12  Aligned_cols=133  Identities=23%  Similarity=0.387  Sum_probs=117.2

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ++.++.+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++.+
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            4556789998 9999999   666555 55677888999998888888888 7554    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+.+....+      .|++||+||+|+.+.+.++.++++++++...
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  152 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASEN------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG  152 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999999998887655      6899999999999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.4e-23  Score=154.06  Aligned_cols=133  Identities=26%  Similarity=0.412  Sum_probs=112.5

Q ss_pred             cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG  107 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~  107 (179)
                      .++++..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...++++
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-TEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-CEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            34567899998 9999999   665555 44567788999988888888888 7544    9999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|++++|||+++++||+.+..|+..+.+..+.       .|+++||||+|+.+.+.++.+++..++....
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  144 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDD-------VCRILVGNKNDDPERKVVETEDAYKFAGQMG  144 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTT-------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECCCCchhcccCHHHHHHHHHHcC
Confidence            99999999999999999999999999886654       6889999999999989999999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.90  E-value=1.7e-23  Score=160.89  Aligned_cols=129  Identities=15%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.+||   ++.++. ..+...+.||++.++ .+.+.++ +..+    |||+|+++|..++..+++++|++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETE-EQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEEC-CEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            4579998 9999999   666655 667888899999877 4667777 7665    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHH-HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036        112 LLIFDVTNENSFKD-VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       112 ilvyDit~~~Sf~~-l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~  178 (179)
                      |+|||+++++||++ +..|+..+.+..+.       .|++|||||+||.+            +|.++.+++.++|++.+.
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCPS-------TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCTT-------SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            99999999999999 69999999987654       68999999999976            489999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.90  E-value=5.7e-24  Score=157.38  Aligned_cols=129  Identities=19%  Similarity=0.251  Sum_probs=110.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchhhhhhhhcCCcEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ..+||+ +|+.|||   +++.+. ..+...+.||++.++..+.+.++ +.   .+  ||++|+++|..++..+++++|++
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP-GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEET-TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeC-CCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            478997 9999999   666655 55667788999988888888888 62   33  99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+++..|+..+.+...   ..      |+++|||||+|+.++|.++.+++++++++.+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~  146 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQ------PLVALVGNKIDLEHMRTIKPEKHLRFCQENG  146 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCC------CeEEEEEEccccccccccCHHHHHHHHHHcC
Confidence            999999999999999999999987542   22      5688999999999889999999999998754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=9.5e-24  Score=162.88  Aligned_cols=131  Identities=14%  Similarity=0.134  Sum_probs=104.0

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEecCCCee----eeCCCchh-chhhhhhhhc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR-FLSLTTGLYR  106 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~-~~~~~~~~~~  106 (179)
                      ..+..+||+ ||++|||   ++.++.+   .+.+. .+++|.++..+.+.++ +..+    |||+|++. +..+.+.|++
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~-~~~~~l~~~Dt~g~~~~~~~l~~~~~~  110 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVD-GESATIILLDMWENKGENEWLHDHCMQ  110 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEET-TEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEEC-CeeeEEEEeecCCCcchhhhHHHHHHh
Confidence            455679998 9999999   6666652   22333 3557778877888888 7764    99999987 6678888999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      .++++|+|||+++++||+++..|+.++.+... .+      .|++|||||+||.++|+|+.++++.+|....
T Consensus       111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~------~piilVgNK~DL~~~r~v~~~e~~~~a~~~~  176 (211)
T 2g3y_A          111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTED------IPIILVGNKSDLVRCREVSVSEGRACAVVFD  176 (211)
T ss_dssp             CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTT------SCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC------CcEEEEEEChHHhcCceEeHHHHHHHHHHcC
Confidence            99999999999999999999999998876432 23      6899999999998889999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=156.44  Aligned_cols=128  Identities=13%  Similarity=0.134  Sum_probs=105.1

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.|||   ++.++. ..+...+.+|++..+. +.+.++ +..+    |||+|+++|..+ ..|+++++++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVD-HQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEET-TEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEEC-CEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            3579997 9999999   665555 5577888999997763 556677 6655    999999999886 5699999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+++..|+.++.+...   .+      .|++|||||+|+.++|+++.++++++|++.+
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  158 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRS------IPALLLGNKLDMAQYRQVTKAEGVALAGRFG  158 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCC------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCC------CCEEEEEECcchhhcCccCHHHHHHHHHHcC
Confidence            999999999999999999999987642   23      6889999999999889999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.90  E-value=6.7e-23  Score=150.16  Aligned_cols=131  Identities=20%  Similarity=0.326  Sum_probs=113.5

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      +...+||+ +|+.|||   +++.+. ..+...+.+|++.++..+.+.++ +..+    |||+|++++..+...+++++|+
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~   81 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRALAPMYYRGSAA   81 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence            34679997 9999999   666655 44567788999988887888887 6544    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+.+..|+..+.+.....      .|+++||||+|+.+.++++.+++++++++..
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~------~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~  142 (170)
T 1z0j_A           82 AIIVYDITKEETFSTLKNWVRELRQHGPPS------IVVAIAGNKCDLTDVREVMERDAKDYADSIH  142 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECCccccccccCHHHHHHHHHHcC
Confidence            999999999999999999999998875554      7899999999999889999999999988654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=157.93  Aligned_cols=143  Identities=21%  Similarity=0.332  Sum_probs=108.6

Q ss_pred             ccccccccccccccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCc
Q psy15036         24 PTYRCTKVTKMTAAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLV   94 (179)
Q Consensus        24 ~~~~~~~~~~m~~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~   94 (179)
                      +..-|.+......  ..+..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+
T Consensus         9 ~~~~~~~~~~~p~--~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~   85 (192)
T 2il1_A            9 HHSSGLVPRGSPR--PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQ   85 (192)
T ss_dssp             ---------------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-TEEEEEEEEEECCS
T ss_pred             ccccccCCCCCCc--ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCc
Confidence            4445555444333  456789997 9999999   666655 45567788999988888888888 7544    999999


Q ss_pred             hhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036         95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus        95 e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      +++..+...+++++|++|+|||+++++||+.+..|+..+......+      .|++|||||+|+.+.|+++.++++++++
T Consensus        86 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~------~piilV~NK~Dl~~~~~v~~~~~~~~~~  159 (192)
T 2il1_A           86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED------AELLLVGNKLDCETDREITRQQGEKFAQ  159 (192)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHH
Confidence            9999999999999999999999999999999999999998876654      6899999999999889999999999997


Q ss_pred             h
Q psy15036        175 T  175 (179)
Q Consensus       175 ~  175 (179)
                      +
T Consensus       160 ~  160 (192)
T 2il1_A          160 Q  160 (192)
T ss_dssp             T
T ss_pred             h
Confidence            6

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-23  Score=161.22  Aligned_cols=132  Identities=21%  Similarity=0.414  Sum_probs=107.4

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .+++.+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +..+    |||+|+++|..++..+++.++
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-GKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            346789998 9999999   666655 55667788999998888888888 7544    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||+.+..|+..+.......      .|++|||||+|+.+.|+++.+++.+++++..
T Consensus        88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  149 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNHWLSELRENADDN------VAVGLIGNKSDLAHLRAVPTEESKTFAQENQ  149 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--------CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            9999999999999999999999998876544      6899999999999889999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.90  E-value=3.3e-23  Score=155.81  Aligned_cols=137  Identities=26%  Similarity=0.468  Sum_probs=115.4

Q ss_pred             ccccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhh
Q psy15036         34 MTAAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGL  104 (179)
Q Consensus        34 m~~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~  104 (179)
                      +...++++..+||+ +|+.|||   +++++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+
T Consensus        16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~   94 (193)
T 2oil_A           16 PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAITSAY   94 (193)
T ss_dssp             ----CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTTHHHH
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHH
Confidence            34445678899997 9999999   666655 45667788999988887888777 6554    9999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++++++|+|||++++.+|+.+..|+..+.......      .|+++|+||+|+.+.+.+..+++++++++.+
T Consensus        95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  161 (193)
T 2oil_A           95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT------IVVMLVGNKSDLSQAREVPTEEARMFAENNG  161 (193)
T ss_dssp             HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CeEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence            999999999999999999999999999998765444      6899999999998888999999999997654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=158.96  Aligned_cols=134  Identities=24%  Similarity=0.379  Sum_probs=105.3

Q ss_pred             cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG  107 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~  107 (179)
                      .++++..+||+ +|+.+||   +++.+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++.
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~   97 (200)
T 2o52_A           19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-GKTVKLQIWDTAGQERFRSVTRSYYRG   97 (200)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEET-TEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEEC-CeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence            34567889998 9999999   655555 55667788999988888888887 7544    9999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|++|+|||+++++||+.+..|+..+......+      .|++|||||+|+.+++.++.+++.+++++..
T Consensus        98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  161 (200)
T 2o52_A           98 AAGALLVYDITSRETYNSLAAWLTDARTLASPN------IVVILCGNKKDLDPEREVTFLEASRFAQENE  161 (200)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence            999999999999999999999999998876554      6899999999998889999999999988754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=3.9e-23  Score=158.14  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=109.2

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ..+..+||+ +|+.|||   +++++. ..+...+.||++.++ .+.+.++ +..+    |||+|+++|..++..++++++
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESS-SSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEEC-CEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            445689998 9999999   666655 556777889998776 4667777 7655    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhh
Q psy15036        110 GFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQ  176 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~  176 (179)
                      ++|+|||+++++||+++ ..|+..+++..+.       .|++|||||+|+.+            +|.|+.++++++|++.
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEFCPN-------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTT-------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            99999999999999999 7999999877544       68999999999974            4789999999999876


Q ss_pred             C
Q psy15036        177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      +
T Consensus       175 ~  175 (205)
T 1gwn_A          175 G  175 (205)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.90  E-value=5.5e-23  Score=153.03  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=112.4

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .....+||+ +|+.|||   ++..+. ..+...+.+|++..+ .+.+.++ +..+    ||++|+++|..+...+++++|
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEID-NQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeC-CcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            344689997 9999999   555555 556778889998777 5677777 7655    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++++|||+++++||+++..|+..+.+.....     ..|+++||||+|+.++|.++.+++++++++..
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~  154 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE-----SFPMILVANKVDLMHLRKVTRDQGKEMATKYN  154 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-----CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEECCCchhccCcCHHHHHHHHHHhC
Confidence            9999999999999999999999997754321     16889999999999999999999999998765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.90  E-value=5.8e-23  Score=153.70  Aligned_cols=128  Identities=15%  Similarity=0.149  Sum_probs=108.8

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.|||   +++++. ..+...+.||++..+ .+.+.++ +..+    ||++|+++|..++..++++++++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECS-SCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEEC-CEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            4579997 9999999   666655 556778899998776 4567777 7655    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~  177 (179)
                      |+|||+++++||+++ ..|+..+.+..+.       .|++|||||+|+.+            +|.|+.+++.++|++.+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCPN-------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  154 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTT-------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence            999999999999999 7999999877544       68999999999975            37899999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.90  E-value=7.7e-23  Score=149.64  Aligned_cols=129  Identities=20%  Similarity=0.315  Sum_probs=112.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++++|+++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            478997 9999999   666655 55677788999988887888887 6554    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+..+.+.....      .|+++||||+|+.+++.++.+++.+++++..
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPN------IVIALSGNKADLANKRAVDFQEAQSYADDNS  142 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECccCccccccCHHHHHHHHHHcC
Confidence            9999999999999999999998876554      6899999999998889999999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.90  E-value=4.2e-23  Score=156.26  Aligned_cols=129  Identities=14%  Similarity=0.145  Sum_probs=85.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-c--cCCCcccCcceeeeeEEEEEecCCC--ee----eeCCCchhchhhhhhhhcCC
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-Y--LGTGTHGKTVGIVFPAISVTYSIGP--RY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~--~~~~~~~~Ti~~~~~~k~v~~~~~~--~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ..+||+ +|+.|||   ++..+. .  .+...+.+|++.++..+.+.++ +.  .+    ||++|+++|..+...+++++
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP-DTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECT-TSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC-CcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            578997 9999999   666665 3  4667888999988888888888 76  33    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCC-CCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQR-CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~-~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+.....   ..      .|+++||||+|+.+ +|.++.+++++++++.+
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~------~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~  164 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERP------LRAVLVANKTDLPPQRHQVRLDMAQDWATTNT  164 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC------CEEEEEEECC-------CCCHHHHHHHHHHTT
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC------CcEEEEEECcccchhhccCCHHHHHHHHHHcC
Confidence            999999999999999999999999998765   33      68999999999988 89999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.89  E-value=1e-22  Score=152.04  Aligned_cols=133  Identities=28%  Similarity=0.391  Sum_probs=114.4

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeee-EEEEEecCCC---------e--e--eeCCCchhch
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFP-AISVTYSIGP---------R--Y--FRFPLVSRFL   98 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~-~k~v~~~~~~---------~--i--wDt~G~e~~~   98 (179)
                      +++++.+||+ +|+.|||   +++.+. ..+...+.+|++.++. .+.+.++ +.         .  +  ||++|++++.
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~   84 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRA-NGPDGAVGRGQRIHLQLWDTAGLERFR   84 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECT-TSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEec-CCcccccccCcEEEEEEEeCCCcHHHH
Confidence            3677899998 9999999   666665 4566788899998887 6677777 65         3  3  9999999999


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      .+...+++++|++|+|||++++++|+.+..|+..+..... ..      .|+++|+||+|+.+++.++.+++++++++.+
T Consensus        85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  158 (195)
T 3bc1_A           85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN------PDIVLCGNKSDLEDQRAVKEEEARELAEKYG  158 (195)
T ss_dssp             HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSS------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988764 33      6889999999999889999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.89  E-value=1.1e-22  Score=151.13  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=110.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|.+..+ .+.+.++ +..+    ||++|+++|..+...+++++|+++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEEC-CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            478997 9999999   666665 667888899999877 5777777 7554    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+.++.+.....     ..|+++||||+|+.+++.++.+++++++++..
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  142 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKV-----QIPIMLVGNKKDLHMERVISYEEGKALAESWN  142 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC---------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccchhcceecHHHHHHHHHHhC
Confidence            9999999999999999999997765431     16889999999999999999999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.89  E-value=8.2e-23  Score=153.31  Aligned_cols=130  Identities=22%  Similarity=0.236  Sum_probs=112.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhch-hhhhhhhcCCcE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFL-SLTTGLYRGTMG  110 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~-~~~~~~~~~~~~  110 (179)
                      ...+||+ +|+.|||   ++.++. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|. .+...+++++|+
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3579997 9999999   666655 55677788999998888888888 7544    9999999998 899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|+|||+++++||+.+..|+.++.+... .+      .|+++|+||+|+.+.|+++.+++++++++..
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  158 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLAND------IPRILVGNKCDLRSAIQVPTDLAQKFADTHS  158 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSC------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECccccccceeCHHHHHHHHHHcC
Confidence            9999999999999999999999988752 33      6889999999999889999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=1.6e-22  Score=147.94  Aligned_cols=128  Identities=19%  Similarity=0.253  Sum_probs=110.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|||   ++..+. ..+...+.||++.++..+.+.++ +..+    ||++|++++..+...+++++|++++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-EHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            58997 9999999   555555 55667788999988887888887 6654    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC---CCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC---REVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~---r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+..+.+....+      .|+++|+||+|+.+.   +++..+++++++++.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~  142 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKD------IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG  142 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCCccccccccCCCHHHHHHHHHHcC
Confidence            999999999999999999998876544      689999999999765   8899999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.3e-22  Score=150.28  Aligned_cols=132  Identities=27%  Similarity=0.356  Sum_probs=105.7

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccC-CCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLG-TGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~-~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      .++..+||+ +|+.+||   ++..+. ..+ ...+.+|++.++....+.++ +..+    ||++|+++|..+...+++++
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-GVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-TEEEEEEEEECCCC--------CCGGGC
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            456789997 9999999   665555 333 34678999988887777787 7644    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+......+      .|+++|+||+|+.+++.++.+++++++++.+
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  147 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHD------VALMLLGNKVDSAHERVVKREDGEKLAKEYG  147 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECCSTTSCCCSCHHHHHHHHHHHT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence            99999999999999999999999998876544      6899999999999889999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.89  E-value=7.4e-23  Score=149.66  Aligned_cols=129  Identities=15%  Similarity=0.193  Sum_probs=112.2

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ++.+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-DEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-TEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEEC-CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            3579997 9999999   555555 55677889999988888888887 6544    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+.+..|+..+......       .|+++|+||+|+.+.++++.+++++++++.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  140 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEVGD-------IPTALVQNKIDLLDDSCIKNEEAEGLAKRLK  140 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCS-------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence            9999999999999999999999887644       6889999999999889999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.89  E-value=1e-22  Score=149.24  Aligned_cols=128  Identities=22%  Similarity=0.383  Sum_probs=105.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      +.+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|+++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            468997 9999999   555555 45667788999988888888888 7654    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+..+.+.....      .|+++|+||+|+ .++.++.+++++++++.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~  138 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDE------AQLLLVGNKSDM-ETRVVTADQGEALAKELG  138 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTC-TTCCSCHHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECccC-CcCccCHHHHHHHHHHcC
Confidence            9999999999999999999998876554      689999999999 568899999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.89  E-value=1.5e-22  Score=152.39  Aligned_cols=131  Identities=18%  Similarity=0.150  Sum_probs=110.1

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .....+||+ +|+.|||   +++.+. ..+...+.+|++..+. ..+.++ +..+    |||+|+++|..++..+++++|
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYK-NEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEET-TEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEEC-CEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            345689998 9999999   665555 5567788999997775 456677 6655    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHhhhCC
Q psy15036        110 GFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~~~~~  178 (179)
                      ++|+|||+++++||+++ ..|+..+......       .|++|||||+|+.+  .|.++.+++.+++++.+.
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-------AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC  161 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTT-------SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence            99999999999999998 7899999876544       68999999999975  488999999999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.89  E-value=3.9e-23  Score=158.28  Aligned_cols=134  Identities=27%  Similarity=0.391  Sum_probs=112.9

Q ss_pred             cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC----------ee----eeCCCchhc
Q psy15036         37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP----------RY----FRFPLVSRF   97 (179)
Q Consensus        37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~----------~i----wDt~G~e~~   97 (179)
                      .+++++.+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +.          .+    |||+|+++|
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~   97 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN-AQGPNGSSGKAFKVHLQLWDTAGQERF   97 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEE-C-------CCEEEEEEEEEEEESHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEEC-CccccccccCceeEEEEEEECCCcHhH
Confidence            35677899998 9999999   665555 45677888999998888888887 65          33    999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ..++..+++.+|++|+|||+++++||+.+..|+..+..... ..      .|++||+||+|+.+++.++.+++++++++.
T Consensus        98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~------~piilV~NK~Dl~~~~~v~~~~~~~~~~~~  171 (217)
T 2f7s_A           98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN------PDIVLIGNKADLPDQREVNERQARELADKY  171 (217)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTC------CEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred             HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC------CCEEEEEECCccccccccCHHHHHHHHHHC
Confidence            99999999999999999999999999999999988766543 22      689999999999988999999999999875


Q ss_pred             C
Q psy15036        177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      .
T Consensus       172 ~  172 (217)
T 2f7s_A          172 G  172 (217)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.89  E-value=2.5e-22  Score=148.23  Aligned_cols=129  Identities=22%  Similarity=0.303  Sum_probs=112.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    |||+|++++..+...+++++|+++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            358997 9999999   666655 55677888999988888888888 7544    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+..+......+      .|+++|+||+|+.++++++.+++..++++..
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  150 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSD------VIIMLVGNKTDLSDKRQVSTEEGERKAKELN  150 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTS------SEEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCcccccCcCCHHHHHHHHHHcC
Confidence            9999999999999999999998876554      6899999999999889999999999988754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.89  E-value=4.5e-22  Score=147.01  Aligned_cols=132  Identities=23%  Similarity=0.249  Sum_probs=107.5

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      .+..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|+
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-TEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34679997 9999999   666655 55677888999998888888888 7644    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +++|||+++++||+.+..|+..+.......  .....|+++||||+|+. +++++.+++.+++++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~  144 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVK--EPESFPFVILGNKIDIS-ERQVSTEEAQAWCRD  144 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCS--CTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHcccc--ccCCCcEEEEEECCccc-ccccCHHHHHHHHHh
Confidence            999999999999999999999998776411  00116889999999998 689999999999984

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=148.70  Aligned_cols=129  Identities=14%  Similarity=0.171  Sum_probs=99.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchh--chhhhhhhhcCCcEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR--FLSLTTGLYRGTMGF  111 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~--~~~~~~~~~~~~~~v  111 (179)
                      ..+||+ +|+.|||   +++++.........++.|.++..+.+.++ +..+    ||++|+++  +..+...+++.++++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVD-GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEET-TEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEEC-CEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            468997 9999999   66666644333445677777777888888 7654    99999998  677888999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+.+..|+..+.+... .+      .|+++||||+|+.+.|+++.++++.++.+..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~  142 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADH------VPIILVGNKADLARCREVSVEEGRACAVVFD  142 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCC------CCEEEEEEChhhccccccCHHHHHHHHHHcC
Confidence            999999999999999999999887532 22      6889999999999889999999999987654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=3.3e-22  Score=150.42  Aligned_cols=128  Identities=20%  Similarity=0.223  Sum_probs=109.1

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.+||   ++.++. ..+...+.+|++..+ .+.+.++ +..+    ||++|+++|..+...+++++|++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESS-SCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEC-CEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            4679997 9999999   665555 556778889998766 4667777 7654    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      |+|||+++++||+++. .|+..+.+..+.       .|++|||||+|+.+.            |.++.+++.+++++.+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPN-------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG  165 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTT-------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence            9999999999999997 899999887553       688999999999753            7899999999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.88  E-value=2.7e-22  Score=148.31  Aligned_cols=129  Identities=20%  Similarity=0.233  Sum_probs=109.5

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.|||   +++.+. ..+...+.+|++..+. +.+.++ +..+    ||++|+++|..+...++++++++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVD-GIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEET-TEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            4578997 9999999   665555 5567788899987775 667777 6544    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+.+..|+.++.+.. ..+      .|+++|+||+|+.+.++++.+++++++.+..
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  145 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDD------FPVVLVGNKADLESQRQVPRSEASAFGASHH  145 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSC------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999996544 333      6889999999999889999999999987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.88  E-value=1.8e-23  Score=158.49  Aligned_cols=133  Identities=23%  Similarity=0.387  Sum_probs=107.7

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      ++.++.+||+ +|+.+||   +++.+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  106 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGA  106 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-TEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence            3567889998 9999999   665555 55667778899988888888888 7554    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |++|+|||+++++||+.+..|+..+......+      .|++||+||+|+.+++.++.+++++++++..
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~  169 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASEN------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG  169 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC------SEEEEC-CCSSCC--CCCCSCC-CHHHHTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCC------CCEEEEEECccCCccccCCHHHHHHHHHHcC
Confidence            99999999999999999999999998776554      6899999999999889999888888887654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=4.5e-23  Score=154.61  Aligned_cols=130  Identities=13%  Similarity=0.101  Sum_probs=105.5

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeeeccCCCcc-----------cCcceeeeeEEEE-EecCCCee----eeCCCchhch
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTH-----------GKTVGIVFPAISV-TYSIGPRY----FRFPLVSRFL   98 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~-----------~~Ti~~~~~~k~v-~~~~~~~i----wDt~G~e~~~   98 (179)
                      ..+..+||+ +|++|||   +++++.+.+...+           .||++.++..+.+ .++ +..+    |||+|+++|.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVK-GFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSS-SCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccccccccc-CCceEEEEEeCCChHHHH
Confidence            445789998 9999999   6666666666663           4588877765555 555 5554    9999999999


Q ss_pred             hhhhhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036         99 SLTTGLYRGTMGFLLIFDVT------NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit------~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      .+++.+++++|++|+|||++      ++++|+++..|+.+++.....       .|++|||||+|+.+  .++.++++++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~-------~piilv~NK~Dl~~--~~~~~~~~~~  159 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD-------VPIVIQVNKRDLPD--ALPVEMVRAV  159 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTS-------SCEEEEEECTTSTT--CCCHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCC-------CCEEEEEEchhccc--ccCHHHHHHH
Confidence            99999999999999999999      778999999999888433222       68999999999976  5999999999


Q ss_pred             HhhhCC
Q psy15036        173 GSTQSS  178 (179)
Q Consensus       173 a~~~~~  178 (179)
                      +++.+.
T Consensus       160 ~~~~~~  165 (198)
T 3t1o_A          160 VDPEGK  165 (198)
T ss_dssp             HCTTCC
T ss_pred             HHhcCC
Confidence            987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.88  E-value=3.6e-22  Score=148.01  Aligned_cols=124  Identities=14%  Similarity=0.063  Sum_probs=99.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|++|||   ++.++. ..+.. +.||++..+ .+.+.++ +..+    |||+|+++     ..|++++|++|
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVD-GQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEET-TEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEEC-CEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            468997 9999999   666665 44544 889998554 5777887 7655    99999987     46899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc--CCCCCCCHHHHHHHHhhh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL--QRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl--~~~r~Vs~~e~~~~a~~~  176 (179)
                      +|||+++++||+++..|++.+........   +.+|++|||||+|+  ..+|.++.+++++++++.
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~---~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~  140 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGR---GGLALALVGTQDRISASSPRVVGDARARALXADM  140 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSS---CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccccccCcCCHHHHHHHHHhh
Confidence            99999999999999998887776543210   11689999999999  467899999999999875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=1.6e-22  Score=153.20  Aligned_cols=130  Identities=20%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|+++|..+...+++++|++
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            3579997 9999999   666655 44667788999988887888888 7654    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC------CCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ------RCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~------~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+|||+++++||+.+..|+..+......+      .|++|||||+|+.      ..|.++.+++++++++..
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~  170 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDAAHET------VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG  170 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHC---------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999998776544      6899999999996      568999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.88  E-value=3.3e-22  Score=146.25  Aligned_cols=127  Identities=16%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      .+||+ +|++|||   +++.+.+.......++.+..+ .+.+.++ +..+    ||++|++++..+...+++.++++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVD-GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEET-TEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEEC-CEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58997 9999999   666666554445567777655 4666777 6665    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ||+++++||+.+..|+..+.+... .+      .|+++||||+|+.+.+.++.+++++++....
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  137 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDD------VPIILVGNKSDLVRSREVSVDEGRACAVVFD  137 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---C------CCEEEEEECTTCCSSCCSCHHHHHHHHHHTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEeccccccccccCHHHHHHHHHHhC
Confidence            999999999999999999987542 22      6889999999999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.88  E-value=3e-22  Score=146.88  Aligned_cols=129  Identities=20%  Similarity=0.183  Sum_probs=94.5

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh-hhhhhhcCCcEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS-LTTGLYRGTMGFL  112 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~-~~~~~~~~~~~vi  112 (179)
                      .+||+ +|++|||   ++..+. ..+...+.++.+.++..+.+.++ +..+    ||++|++++.. ++..+++++|+++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i   80 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVD-KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL   80 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEET-TEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEEC-CeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence            58997 9999999   555554 33444455556667777888888 7665    99999999976 7888899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+.++.+.....     ..|+++||||+|+.++++++.+++.+++++..
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  140 (169)
T 3q85_A           81 IVFSVTDRRSFSKVPETLLRLRAGRPHH-----DLPVILVGNKSDLARSREVSLEEGRHLAGTLS  140 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSTTS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEECCChHHHHHHHHHHHHHHhcccCC-----CCCEEEEeeCcchhhcccCCHHHHHHHHHHcC
Confidence            9999999999999999999998876531     16889999999999889999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=8.1e-22  Score=150.00  Aligned_cols=131  Identities=22%  Similarity=0.390  Sum_probs=110.7

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ..+..+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +..+    |||+|+++|..+...+++++|
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-TEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            445679997 9999999   665555 45667788999988888888888 7543    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||++++++|+.+..|+..+.+.....      .|+++|+||+|+ ..+.++.+++.+++++.+
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~  155 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHANDE------AQLLLVGNKSDM-ETRVVTADQGEALAKELG  155 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTTC------SEEEEEEECTTC-SSCCSCHHHHHHHHHHHT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCC-cccccCHHHHHHHHHHcC
Confidence            9999999999999999999999998876554      689999999999 568899999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.87  E-value=6.3e-22  Score=148.67  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|++|||   ++.++. ..+...+.||.+ .+ .+.+.++ +..+    |||+|+++|.     |++++++++
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVD-GQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEET-TEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEEC-CEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            479998 9999999   665554 667777888844 44 4778888 7766    9999999886     889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCc--CCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELL--QRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl--~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++..|+.++.+... .+      .|++|||||+|+  ..+|.++.+++++++++..
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~  152 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYNYFLRLCSFRNASE------VPMVLVGTQDAISAANPRVIDDSRARKLSTDLK  152 (184)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHTTSCGGG------SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECcccccccccccCHHHHHHHHHHcC
Confidence            99999999999999999999987653 22      688999999999  5678999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=7.7e-22  Score=147.87  Aligned_cols=132  Identities=22%  Similarity=0.369  Sum_probs=111.2

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      +....+||+ +|+.+||   ++.++. ..+...+.+|++.++..+.+.++ +..+    |||+|++++..+...+++++|
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-GNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            334579997 9999999   666665 55677889999998888888887 6654    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||++++++|+.+..|+.++.+.....     ..|+++|+||+|+. +++++.+++.+++++..
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~  151 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYCTRN-----DIVNMLVGNKIDKE-NREVDRNEGLKFARKHS  151 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCS-----CCEEEEEEECTTSS-SCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCcC-----CCcEEEEEECCcCc-ccccCHHHHHHHHHHcC
Confidence            9999999999999999999999988764321     16889999999994 47899999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.87  E-value=4.9e-22  Score=150.32  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=100.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEecCCCee----eeCCCchh-chhhhhhhhcCCc
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR-FLSLTTGLYRGTM  109 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~-~~~~~~~~~~~~~  109 (179)
                      ..+||+ +|++|||   ++.++.+   .+.+. .++++.++..+.+.++ +..+    |||+|++. ++.+.+.|++.++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVD-GESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEET-TEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEEC-CeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            468997 9999999   6666652   22333 3457778777888888 7764    99999877 5668889999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++++|||+++++||+++..|+..+.+... .+      .|++|||||+||.+.|.++.+++..+|....
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~------~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~  145 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTED------IPIILVGNKSDLVRXREVSVSEGRAXAVVFD  145 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCC------CeEEEEEechhhhccccccHHHHHHHHHHhC
Confidence            99999999999999999999998887642 23      6899999999998889999999999887654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.87  E-value=6.2e-22  Score=149.72  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=101.3

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .....+||+ +|+.|||   ++..+. ..+...+.+|++..+ .+.+.++ +..+    ||++|+++|..++..+++++|
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVD-GRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEET-TEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEEC-CEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            445689998 9999999   555554 456778889998665 4667777 7654    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhh
Q psy15036        110 GFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQ  176 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~  176 (179)
                      ++|+|||+++++||+++. .|+..+....+.       .|++|||||+|+.+            ++.++.+++..+++..
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  166 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-------APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI  166 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSS-------SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence            999999999999999996 899999887653       68899999999975            4789999999999876


Q ss_pred             C
Q psy15036        177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      .
T Consensus       167 ~  167 (201)
T 2q3h_A          167 K  167 (201)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.87  E-value=9.1e-22  Score=143.68  Aligned_cols=127  Identities=15%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|||   +++.+. ..+...+.+|++..+. +.+.++ +..+    ||++|++++..+...++++++++++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVD-CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESS-SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            58997 9999999   655555 5567788899987664 667777 6654    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |||+++++||+.+..|+..+.+.....     ..|+++|+||+|+.+++.++.+++.+++++.
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~  138 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTE-----DVPMILVGNKCDLEDERVVGKEQGQNLARQW  138 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcC-----CCcEEEEEECccccccccCCHHHHHHHHHHc
Confidence            999999999999999999998765321     1688999999999988999999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.87  E-value=4.2e-22  Score=147.41  Aligned_cols=133  Identities=22%  Similarity=0.242  Sum_probs=95.6

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchhhhhhhhcCCc
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ....+||+ +|+.|+|   ++..+. ..+...+.+|++.++..+.+.++ +.   .+  ||++|++++..+...+++++|
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-SSCCEEEEEECCC----------CCSTTCC
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEc-CCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            34579997 9999999   665555 55677888999988887777776 33   22  999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc-CCCCCCCHHHHHHHHhh
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL-QRCREVVTPDQIMFGST  175 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl-~~~r~Vs~~e~~~~a~~  175 (179)
                      ++|+|||+++++||+.+..|+.++.......  .....|+++||||+|+ ..++.++.+++.++++.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~  148 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVN--SPETFPFVILGNKIDAEESKKIVSEKSAQELAKS  148 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCS--CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhccc--CcCCCcEEEEEECCccccccccCCHHHHHHHHHh
Confidence            9999999999999999999999998776410  0011688999999999 45678999999999874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.87  E-value=1.4e-21  Score=148.06  Aligned_cols=132  Identities=23%  Similarity=0.255  Sum_probs=109.7

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      .+..+||+ +|+.|||   ++..+. ..+...+.+|++.++..+.+.++ +..+    ||++|++++..+...+++++|+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            45689997 9999999   666655 45677888999999888888888 7654    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +|+|||+++++||+.+..|+..+.......  .....|+++|+||+|+. .+.+..+++.++++.
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~  145 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPR--DPENFPFVVLGNKIDLE-NRQVATKRAQAWCYS  145 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCS--SGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccc--cCCCCcEEEEEECCCCc-ccccCHHHHHHHHHh
Confidence            999999999999999999999998766421  00116889999999998 578999999999873

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.87  E-value=2.8e-22  Score=152.98  Aligned_cols=127  Identities=16%  Similarity=0.162  Sum_probs=105.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++.++. ..+...+.||++..+ .+.+.++ +..+    |||+|+++|..++..+++++|++|
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECS-SCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEEC-CEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            579997 9999999   555555 556778889998666 4667777 7654    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC--------CCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE--------VVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~--------Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++. .|+..+....+.       .|++|||||+|+.+++.        ++.+++.+++++.+
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPN-------VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG  152 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTT-------CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence            999999999999996 899999887653       68899999999976654        58999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=149.53  Aligned_cols=129  Identities=19%  Similarity=0.163  Sum_probs=105.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   +++.+. ..+...+.+|.+..+ .+.+.++ +..+    |||+|+++|..+...+++++|++|
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG-KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-CEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            479997 9999999   666655 556788889998777 4666665 5444    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+..+.+.....     ..|++|||||+|+.+++.++.+++.+++++..
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~  160 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKT-----RVPVVLVGNKADLSPEREVQAVEGKKLAESWG  160 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC----------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccCccccccCHHHHHHHHHHhC
Confidence            9999999999999999999998764321     16889999999999999999999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.87  E-value=1.8e-21  Score=141.81  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=105.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|+|   +++.+. ..+...+.+|.+..+. ..+.++ +..+    ||++|++++..+...+++.++++++
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-TEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEEC-CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            58997 9999999   555555 4466778888886663 556677 6543    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+.+..|+..+.+.....     ..|+++|+||+|+.+.++++.+++++++++..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  140 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN  140 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT-----TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEECccccccCccCHHHHHHHHHHcC
Confidence            999999999999999999998876531     16889999999999889999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.86  E-value=5.6e-21  Score=143.37  Aligned_cols=127  Identities=17%  Similarity=0.298  Sum_probs=108.0

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe----------------------------
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR----------------------------   87 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~----------------------------   87 (179)
                      +..+||+ +|+.+||   ++..+. ..+...+.+|++.++..+.+.++ +..                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLN-DINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETT-C------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEec-Ccccccccccccccccccccccccccccccc
Confidence            4579997 9999999   665655 55677888999988888888877 633                            


Q ss_pred             -----------e--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         88 -----------Y--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        88 -----------i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                                 +  ||++|+++|..+...+++.+|++++|||+++++||+.+..|+..+.+...        .|+++|+|
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--------~piilv~N  155 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--------YIIILVAN  155 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--------CEEEEEEE
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--------CcEEEEEE
Confidence                       3  99999999999999999999999999999999999999999999987643        48899999


Q ss_pred             CCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        155 LELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       155 K~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+| ..+++++.+++++++++..
T Consensus       156 K~D-~~~~~~~~~~~~~~~~~~~  177 (208)
T 3clv_A          156 KID-KNKFQVDILEVQKYAQDNN  177 (208)
T ss_dssp             CTT-CC-CCSCHHHHHHHHHHTT
T ss_pred             CCC-cccccCCHHHHHHHHHHcC
Confidence            999 5668999999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.86  E-value=3.2e-21  Score=140.37  Aligned_cols=128  Identities=17%  Similarity=0.195  Sum_probs=107.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|||   ++..+. ..+...+.+|++..+ .+.+.++ +..+    ||++|++++..+...++++++++++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVD-SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEEC-CEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            58997 9999999   555554 556777888887544 5677777 7653    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+.++.+.....     ..|+++|+||+|+.++++++.+++++++++.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  139 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYE-----KVPVILVGNKVDLESEREVSSSEGRALAEEWG  139 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTS-----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECCcccccccCCHHHHHHHHHHhC
Confidence            999999999999999999998765421     16889999999998889999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.86  E-value=3.5e-21  Score=146.10  Aligned_cols=127  Identities=16%  Similarity=0.131  Sum_probs=107.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.+||   ++..+. ..+...+.||++.++. ..+.++ +..+    ||++|+++|..++..+++++|+++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEET-TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEEC-CEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            478997 9999999   555555 5567778899987775 456777 6544    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+ ..|+..+.+..+.       .|+++||||+|+.+.            |.++.+++.+++++.+
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  172 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCPN-------VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS  172 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTT-------CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC
Confidence            99999999999999 7899998876544       688999999999765            7799999999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=4.1e-21  Score=147.06  Aligned_cols=131  Identities=14%  Similarity=0.204  Sum_probs=107.3

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.|||   ++..+. ..+...+.+|++.......+...++..  +  |||+|++++..+...+++++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            4579997 9999999   666666 556778889998877666655541322  3  99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+|||++++.||+++..|+..+......+      .|++|||||+|+.+.++++.+++.++++...
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  148 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNE------APIVVCANKIDIKNRQKISKKLVMEVLKGKN  148 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSS------SCEEEEEECTTCC----CCHHHHHHHTTTCC
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence            99999999999999999999999887665      6889999999999888999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.86  E-value=4.5e-21  Score=144.98  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|.+..+ ...+.++ +..+    ||++|++++..+...+++.+++++
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            468997 9999999   655555 556778889988666 4667777 6543    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+..+.+.....     ..|++|||||+|+.+.++++.+++.+++++..
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  150 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN  150 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEeccCccccccccHHHHHHHHHHhC
Confidence            9999999999999999999998876421     16889999999999889999999999998654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.86  E-value=1.3e-22  Score=152.05  Aligned_cols=128  Identities=16%  Similarity=0.226  Sum_probs=92.9

Q ss_pred             eeEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEe---c-CCCee--eeCCCchhchhhhhhhhcCCc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTY---S-IGPRY--FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~---~-~~~~i--wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .+||+ +|++|||   +++++..   .+...+.+|+|.++..+.+.+   + ....+  |||+|+++|..+.+.|+++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            47997 9999999   6666654   355678899998887666554   1 02233  999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC---HHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV---TPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs---~~e~~~~a~~~~  177 (179)
                      ++++|||++++ .||+++..|+.++....+.       +|++|||||+|+.+.+.++   .+++.++|++.+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  146 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASS-------SPVILVGTHLDVSDEKQRKACMSKITKELLNKRG  146 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTT-------CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCC-------CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence            99999999997 5899999999999876543       6899999999998766654   455677776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.86  E-value=4.6e-21  Score=142.37  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=109.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   +++.+. ..+...+.+|.+..+. +.+.++ +..+    ||++|++++..+...+++.+|+++
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEEC-CEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            469997 9999999   665555 5567778888886663 556677 6543    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||++++++|+.+..|+.++.+.....     ..|+++|+||+|+.+.++++.+++++++++..
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  154 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN  154 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCT-----TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccCccCHHHHHHHHHHcC
Confidence            9999999999999999999998876531     16889999999999889999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.7e-21  Score=145.20  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++.++. ..+...+.+|++..+ .+.+.++ +..+    ||++|+++ ..+...+++.+++++
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATID-DEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEEC-CEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            479997 9999999   666655 556778889998766 4566777 6554    99999998 788899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++..|+..+.+... .+      .|++|||||+|+.+.|+++.+++++++++..
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~  163 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKN------VTLILVGNKADLDHSRQVSTEEGEKLATELA  163 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSC------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCC------CcEEEEEECcccccccccCHHHHHHHHHHhC
Confidence            99999999999999999999987654 23      6889999999999889999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.85  E-value=2.2e-21  Score=148.87  Aligned_cols=127  Identities=18%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|++..+ .+.+.++ +..+    |||+|+++|..++..++++++++|
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVK-GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEET-TEEEEEEEEEC---------------CEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEEC-CEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            468997 9999999   555555 456677888887655 4567777 7654    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++. .|+..+.+....       .|++|||||+|+...            |.++.+++.++|++.+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  181 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKK-------VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG  181 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSS-------CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence            999999999999996 899999876544       688999999999764            4899999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.85  E-value=4e-21  Score=142.76  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=107.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|++..+ ...+.++ +..+    ||++|+++|..+...+++++|+++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEET-TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEEC-CEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            368997 9999999   665555 556777888988655 4566777 6665    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++. .|+..+.+..+.       .|+++||||+|+.+.            |.++.+++.+++++.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  152 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTT-------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCC-------CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence            999999999999997 899999887653       688999999999653            7899999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.85  E-value=8.2e-21  Score=143.85  Aligned_cols=131  Identities=22%  Similarity=0.450  Sum_probs=110.9

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      +++.+||+ +|+.|||   +++.+. ..+...+.||++.++....+.++ +..+    ||++|+++++.+...+++++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~   80 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERYRRITSAYYRGAVG   80 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-TEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence            35789997 9999999   666666 44667788999988888888898 8765    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||++++.+|+++..|+..+.......      .|+++|+||+||.+.+.++.+++++++.+..
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~  141 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNN  141 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CeEEEEEECcccccccCcCHHHHHHHHHHcC
Confidence            999999999999999999999887664433      6889999999999889999999999998654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.85  E-value=2.1e-21  Score=149.24  Aligned_cols=128  Identities=18%  Similarity=0.240  Sum_probs=106.2

Q ss_pred             cCceeeEEE-EeCCCCc---eeEe-eeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKH-LKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~-~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .....+||+ +|+.|||   ++++ +.+.+...+.+|+|.++....+.++ +..+    |||+|+++|..++..++++++
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            455689998 9999999   5655 4466778889999988887888777 6655    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ++|+|||+++++||+++..|+..+.+....       .|++|||||+|+.+.+ +.. ++.+++++.
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~-~~~-~~~~~~~~~  147 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGNKVDIKDRK-VKA-KSIVFHRKK  147 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTT-------CCEEEEEECTTSSSCS-SCG-GGCCHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECCcccccc-ccH-HHHHHHHHc
Confidence            999999999999999999999999987654       6889999999997643 332 555565544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.85  E-value=3.5e-22  Score=163.07  Aligned_cols=120  Identities=9%  Similarity=-0.015  Sum_probs=88.4

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCC----cccCcceeeeeEEEEEecCCCee--eeCCCchhchh---hhhhhhcCCcEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTG----THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS---LTTGLYRGTMGF  111 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~----~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~---~~~~~~~~~~~v  111 (179)
                      ||| +|++|||   ++.++...+.+    .+.||+|.++..  +  +..-.+  |||+|||+|+.   +++.||++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--ccEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            677 9999999   55444333322    367999988752  2  302233  99999999974   478999999999


Q ss_pred             EEEEeCCCh--hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC-------CCCCHHHHHHHHhh
Q psy15036        112 LLIFDVTNE--NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC-------REVVTPDQIMFGST  175 (179)
Q Consensus       112 ilvyDit~~--~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~-------r~Vs~~e~~~~a~~  175 (179)
                      |+|||++++  ++++.+..|++++.+..+.       .|++|||||+||.++       |+|+.++++++|++
T Consensus        77 IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~-------ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~  142 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNLAMIIEYAYKVNPS-------INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL  142 (331)
T ss_dssp             EEECCCSSCTTHHHHHHHHHHHHHHHHCTT-------CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred             EEEEECCchHHHHHHHHHHHHHHHhhcCCC-------CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence            999999998  3344444455555554433       689999999999763       68999999999985

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.85  E-value=4.2e-21  Score=146.26  Aligned_cols=127  Identities=17%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++.++. ..+...+.+|++..+ ...+.++ +..+    |||+|+++|..+...+++++|+++
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEEC-CEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            479997 9999999   565555 556777888887544 5677777 7765    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC------------CCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR------------EVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r------------~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++. .|+..+......       .|+++||||+|+.+.+            .++.+++..++++.+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  177 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSS-------CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence            999999999999996 899999887644       6889999999997654            489999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.85  E-value=9.8e-21  Score=142.92  Aligned_cols=132  Identities=23%  Similarity=0.466  Sum_probs=114.8

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      ++++.+||+ +|+.|||   +++.+. ..+...+.||++.++....+.++ +..+    ||++|++++..+...+++.++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~  103 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGLERYRAITSAYYRGAV  103 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-TEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence            567789997 9999999   666666 44667888999999988899998 8765    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++++|||++++.||+++..|+..+.+.....      .|+++|+||+||.+.+.++.++++++|.+..
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~  165 (191)
T 1oix_A          104 GALLVYDIAKHLTYENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNG  165 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence            9999999999999999999999887654443      6889999999999888999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.85  E-value=5.1e-22  Score=147.31  Aligned_cols=127  Identities=18%  Similarity=0.188  Sum_probs=92.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.||++..+. +.+.++ +..+    |||+|+++|..++..+++++|+++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN-GATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEEC-CEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            468997 9999999   555555 5567788888886553 334455 5444    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC----------CCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE----------VVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~----------Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++. .|+..+.+..+.       .|+++||||+|+.+++.          ++.+++.+++++.+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  153 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPG-------VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG  153 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTT-------CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence            999999999999997 799999887543       68899999999976654          58999999998765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.85  E-value=5.6e-21  Score=145.01  Aligned_cols=122  Identities=14%  Similarity=0.057  Sum_probs=93.4

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      .+||+ +|++|||   +++++.......+.||++...  +.+.++ +..+  |||+|+++++.++..|++++|++++|||
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D  101 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIA-GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD  101 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEET-TEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEEC-CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence            57897 9999999   666666433356778888653  567778 7666  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +++++||+++..|+.++.+... .+      .|+++||||+|+.+  +++.+++++++..
T Consensus       102 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~~~~~  153 (198)
T 1f6b_A          102 CADHERLLESKEELDSLMTDETIAN------VPILILGNKIDRPE--AISEERLREMFGL  153 (198)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTT------SCEEEEEECTTSTT--CCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCC------CcEEEEEECCCccc--cCCHHHHHHHhCc
Confidence            9999999999999999876532 22      68899999999975  7889999888763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.4e-20  Score=143.39  Aligned_cols=127  Identities=17%  Similarity=0.121  Sum_probs=100.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.||++..+. ..+.++ +..+    |||+|++++..+...+++++|++|
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEET-TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEEC-CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            368997 9999999   655555 5566778889887765 446677 6544    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+ ..|+..+....+.       .|+++||||+|+.+.            +.++.+++.++|++..
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  172 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPN-------VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ  172 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTT-------CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence            99999999999999 7899998876544       588999999999765            6799999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.1e-20  Score=138.29  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=105.4

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|||   +++.+. ..+...+.+|++..+. +.+..+ +..+    |||+|++++..+...+++.+|++++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCD-KSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEET-TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEEC-CEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            58997 9999999   665555 4456678888886654 455565 5543    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||++++++|+.+..|+..+.+.....    +..|+++|+||+|+.+.++++.+++..+++...
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~----~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~  140 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDV----ESIPIMLVGNKCDESPSREVQSSEAEALARTWK  140 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCC----CCCCEEEEEEccccccccccCHHHHHHHHHHhC
Confidence            999999999999999999988765321    115889999999999889999999999987654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.84  E-value=4.9e-20  Score=137.16  Aligned_cols=128  Identities=19%  Similarity=0.188  Sum_probs=103.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|.+.. ....+.++ +..+    ||++|++++..+...+++.+|+++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEE-EEEEEEET-TEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchhe-EEEEEEEC-CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            468997 9999999   665555 45667778888643 44667777 7664    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+.+..|+..+.+.....     ..|+++|+||+|+. .+.+..+++.+++++..
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~  139 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSE-----DVPMVLVGNKCDLP-SRTVDTKQAQDLARSYG  139 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCS-----CCCEEEEEECTTSS-SCSSCHHHHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEECccCc-ccccCHHHHHHHHHHcC
Confidence            9999999999999999999998865431     16889999999997 47899999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.84  E-value=2.2e-20  Score=140.73  Aligned_cols=122  Identities=13%  Similarity=0.026  Sum_probs=100.1

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      .+||+ +|++|||   +++++.......+.||++..  .+.+.++ +..+  |||+|+++++.++..+++++|++++|||
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   99 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIG-NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   99 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEET-TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEEC-CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence            57897 9999999   66666644345678888864  4577788 7666  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +++++||+++..|+.++.+... .+      +|+++||||+|+.+  +++.++++++++.
T Consensus       100 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~~~~~  151 (190)
T 1m2o_B          100 AADPERFDEARVELDALFNIAELKD------VPFVILGNKIDAPN--AVSEAELRSALGL  151 (190)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTT------CCEEEEEECTTSTT--CCCHHHHHHHTTC
T ss_pred             CCChHHHHHHHHHHHHHHcchhhcC------CCEEEEEECCCCcC--CCCHHHHHHHhCC
Confidence            9999999999999999876432 22      68999999999976  7888888877653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.83  E-value=4.3e-21  Score=145.08  Aligned_cols=128  Identities=11%  Similarity=0.021  Sum_probs=94.3

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEE--ecCCC--ee--eeCCCchhchhhh---hhh
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVT--YSIGP--RY--FRFPLVSRFLSLT---TGL  104 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~--~~~~~--~i--wDt~G~e~~~~~~---~~~  104 (179)
                      ...+..+||+ +|+.|||   +++++.+.+...  +|++.++..+.+.  +.++.  .+  ||++|+++|..+.   ..|
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3455689998 9999999   665555544443  5665555433332  32123  23  9999999998887   899


Q ss_pred             hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-------CCCCCHHHHHHHHh
Q psy15036        105 YRGTMGFLLIFDVTNE--NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-------CREVVTPDQIMFGS  174 (179)
Q Consensus       105 ~~~~~~vilvyDit~~--~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-------~r~Vs~~e~~~~a~  174 (179)
                      +++++++|+|||++++  ++++.+..|+.++......       .|++|||||+||.+       +|.|+.+++.++|+
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~  164 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD-------MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD  164 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTT-------CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCC-------CcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence            9999999999999998  7888888888887654443       69999999999743       67888999999988

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.83  E-value=1e-19  Score=132.10  Aligned_cols=127  Identities=18%  Similarity=0.222  Sum_probs=105.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.|+|   ++..+. ..+...+.+|.+..+ .+.+.++ +..+    ||++|++++..+...+++.+|++++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEEC-CEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            47897 9999999   555554 445667778887554 4666777 6654    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||++++++|+.+..|+..+.+.....     ..|+++|+||+|+.+ +.++.+++++++++.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~-----~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~  138 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSD-----DVPMVLVGNKSDLAA-RTVESRQAQDLARSYG  138 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCS-----CCCEEEEEECTTCSC-CCSCHHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEEchhhhh-cccCHHHHHHHHHHcC
Confidence            999999999999999999998876531     168899999999977 7889999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.83  E-value=9.2e-20  Score=136.70  Aligned_cols=123  Identities=14%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeec-c-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKY-L-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~-~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ...+||+ +|+.|||   ++..+.. . +...+.+|++  +..+.+.++ +..+  |||+|++++..++..+++++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS-SLSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS-SCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC-CEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            3579997 9999999   6666653 3 4667888988  445677788 7777  999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      +|||+++++||+.+..|+..+.+...   .+      .|+++|+||+|+.+  .++.++..+++.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~--~~~~~~~~~~~~  152 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRR------IPILFFANKMDLRD--AVTSVKVSQLLC  152 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSC------CCEEEEEECTTSTT--CCCHHHHHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCC------CeEEEEEeCcCccc--CCCHHHHHHHhC
Confidence            99999999999999999999876543   23      68899999999975  566777777663

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=5.2e-20  Score=138.39  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=105.9

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.+||   ++..+. ..+...+.+|++..+. ..+.++ +..+    |||+|+++|..+...+++.+|++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCD-KSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEET-TEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEEC-CEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            3468997 9999999   666655 5566778889886654 455566 5543    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||++++++|+.+..|+..+.+.....    +..|+++||||+|+.+ +.++.+++.+++++.+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~  144 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSV----EDIPVMLVGNKCDETQ-REVDTREAQAVAQEWK  144 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCG----GGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCC----CCCCEEEEEECccCCc-cccCHHHHHHHHHHhC
Confidence            99999999999999999998888765421    1168899999999975 7899999999988754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.83  E-value=9.9e-20  Score=136.24  Aligned_cols=128  Identities=19%  Similarity=0.197  Sum_probs=95.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|.+..+ .+.+.++ +..+    ||++|++++..+...+++.+++++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEEC-CEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            368997 9999999   555555 446667778887655 3566777 6653    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|||++++++|+.+..|+..+.......     ..|+++|+||+|+.+ +.++.+++++++++.+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~  156 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSD-----DVPMVLVGNKCDLPT-RTVDTKQAHELAKSYG  156 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCS-----CCCEEEEEECTTCSC-CCSCHHHHHHHHHHHT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCC-----CCeEEEEEECCcCCc-ccCCHHHHHHHHHHcC
Confidence            9999999999999999999998876521     168899999999976 7899999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.82  E-value=5.9e-20  Score=137.29  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=92.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|++|||   +++++.......+.||+|..  .+.+.++ +..+  ||++|+++++.++..|++++|++++||
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   91 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ-GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI   91 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET-TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence            468997 9999999   66666655556678898843  4567777 7666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      |+++++||+++..|+.++.+.. ..+      .|+++||||+|+.+.+
T Consensus        92 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~~~  133 (181)
T 1fzq_A           92 DSADRKRFEETGQELTELLEEEKLSC------VPVLIFANKQDLLTAA  133 (181)
T ss_dssp             ETTCGGGHHHHHHHHHHHTTCGGGTT------CCEEEEEECTTSTTCC
T ss_pred             ECcCHHHHHHHHHHHHHHHhChhhcC------CCEEEEEECcCcccCC
Confidence            9999999999999998876532 222      6889999999997644

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.82  E-value=1.2e-19  Score=132.27  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=87.8

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      +||+ +|+.|||   ++..+. ..+ ..+.||++.  ..+.+... +..+  ||++|++++..++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~t~~~--~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCS-SCCCCCSSC--CEEEEECS-SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCc-CcccCcCce--eEEEEEEC-CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            5887 9999999   666665 334 346788884  34566666 6666  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      +++++||+++..|+..+.+.. ..+      .|+++||||+|+.+.
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAEDELRD------AVLLVFANKQDLPNA  116 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTC
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcC------CeEEEEEECcCCcCC
Confidence            999999999999999887542 222      689999999999763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.81  E-value=1.6e-19  Score=135.70  Aligned_cols=120  Identities=9%  Similarity=0.036  Sum_probs=89.4

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCC-cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcE
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTG-THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~-~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      ......||+ +|+.+||   ++.++. ..+.. .+.+|++...  ..+... +..+  |||+|+++|..++..|++++|+
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG-RVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET-TEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC-CEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            445689997 9999999   666655 45556 6789998543  445555 5555  9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCc--cCccccceEEEEeeCCCcCCC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGAL--FTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~--~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      +|+|||+++++||+++..|+..+.+.....  .+.....|++|||||+|+.+.
T Consensus        90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            999999999999999999999887642210  000001689999999999765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.6e-19  Score=135.10  Aligned_cols=120  Identities=10%  Similarity=0.079  Sum_probs=92.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ..+||+ +|+.+||   ++.++. ..+. .+.||++..  .+.+.++ +..+  |||+|++++..++..+++++|++|+|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEET-TEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            368997 9999999   666666 4444 778898844  4566777 7666  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      ||+++++||+++..|+.++.+... .+      .|+++||||+|+.+  .++.++..+..
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~i~~~~  142 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAHEDLRK------AGLLIFANKQDVKE--CMTVAEISQFL  142 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTT------CEEEEEEECTTSTT--CCCHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhchhhCC------CeEEEEEECCCCcC--CCCHHHHHHHh
Confidence            999999999999999999886531 22      68999999999975  45566655543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.81  E-value=4e-19  Score=132.49  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+.|||   ++.++.......+.||++..  .+.+.++ +..+  |||+|++++..++..+++++|++++||
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHR-GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   93 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEET-TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            468997 9999999   66666644367788998844  4566677 7766  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQI  170 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~  170 (179)
                      |+++++||+++..|+.++.+... .+      .|+++|+||+|+.+.+  ..++..
T Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~--~~~~~~  141 (186)
T 1ksh_A           94 DSADRQRMQDCQRELQSLLVEERLAG------ATLLIFANKQDLPGAL--SCNAIQ  141 (186)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTCC--CHHHHH
T ss_pred             ECcCHHHHHHHHHHHHHHHhChhcCC------CcEEEEEeCccCCCCC--CHHHHH
Confidence            99999999999999988876522 22      6899999999997643  344443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.80  E-value=7.7e-20  Score=134.03  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=90.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+.|||   ++..+.......+.||++..  .+.+.++ +..+  |||+|++++..++..+++++|++++||
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~   82 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYK-NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   82 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEET-TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEEC-CEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            468997 9999999   66666533334578888754  3566777 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      |+++++||+.+..|+..+.+... .+      .|+++|+||+|+.+.
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~  123 (171)
T 1upt_A           83 DSCDRDRIGISKSELVAMLEEEELRK------AILVVFANKQDMEQA  123 (171)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTC
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhCC------CEEEEEEECCCCcCC
Confidence            99999999999999988875432 22      689999999999764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.80  E-value=2.3e-19  Score=133.69  Aligned_cols=122  Identities=11%  Similarity=0.070  Sum_probs=95.7

Q ss_pred             CceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ....+||+ +|+.+||   ++.++.......+.+|+|...  +.+.++ +..+  ||++|++++..+...+++++|++++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEET-TEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEEC-CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            33579997 9999999   666665433367788888554  566677 7666  9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      |||+++++||+++..|+..+.+.. ..+      .|+++||||+|+.+  .++.++..+.
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~i~~~  146 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRK------AGLLIFANKQDVKE--CMTVAEISQF  146 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTT--CCCHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCC------CeEEEEEECCCccc--CCCHHHHHHH
Confidence            999999999999999998887643 222      68999999999976  4455555544

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.80  E-value=2.8e-19  Score=144.59  Aligned_cols=128  Identities=17%  Similarity=0.175  Sum_probs=107.7

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|+.|||   ++.++. ..+...+.+|++..+ .+.+.++ +..+    |||+|+++|..+...+++++|++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  230 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  230 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEET-TEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEEC-CEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence            3468997 9999999   555554 556778888988655 4667777 7665    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+++. .|+..+....+.       .|+++||||+|+.+.            |.++.+++.+++++..
T Consensus       231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  302 (332)
T 2wkq_A          231 LICFSLVSPASFHHVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  302 (332)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTT-------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhhCCC-------CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence            9999999999999996 899999877653       688999999999653            7899999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.79  E-value=9e-19  Score=131.30  Aligned_cols=110  Identities=14%  Similarity=0.076  Sum_probs=91.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ..+||+ +|+.+||   ++..+. ..+...+.||++.++.  .+... +..+  ||++|+++|..++..+++++|++|+|
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG-NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   97 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET-TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC-CEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence            468997 9999999   666665 5566778899997764  35555 5555  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ||+++++||+.+..|+..+.+... .+      .|++|||||+|+.+
T Consensus        98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~  138 (188)
T 1zd9_A           98 VDAADQEKIEASKNELHNLLDKPQLQG------IPVLVLGNKRDLPG  138 (188)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTT------CCEEEEEECTTSTT
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCC------CCEEEEEECCCCcc
Confidence            999999999999999988876422 22      68899999999976

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.79  E-value=3.1e-19  Score=144.63  Aligned_cols=127  Identities=15%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeecc---C-CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc-----hhhhhhhhcC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYL---G-TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF-----LSLTTGLYRG  107 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~---~-~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~-----~~~~~~~~~~  107 (179)
                      .+||+ +|++|||   ++..+...   + ...+.+|++..+.  .+.++++..+  ||++|+++|     ..++..++++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            58997 9999999   55554422   1 2367789987775  3445413344  999999999     7889999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHh--CCccCccccceEEEEeeCCCcCC--CCC----CCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMD--GALFTHFELQIVFMRGCLELLQR--CRE----VVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~--~~~~~~~~~~~iilvGnK~Dl~~--~r~----Vs~~e~~~~a~~~~  177 (179)
                      +|++|+|||+++++||+++..|...+.+..  ..+      .|++|||||+|+.+  +|.    +..+++.+++++.+
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~------~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD------AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG  152 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT------CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC------CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999988866655432  222      68999999999987  676    88899999998875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.79  E-value=5.9e-19  Score=133.08  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+.|||   ++.++.......+.||++.  ..+.+... +..+  ||++|+++|..++..+++++|++++||
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~--~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~  104 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYK-NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV  104 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE--EEEEEEET-TEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce--eEEEEEEC-CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            368997 9999999   6666553322356788873  34566666 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      |+++++||+.+..|+..+.+... .+      .|++|||||+|+.+.
T Consensus       105 D~~~~~s~~~~~~~l~~~~~~~~~~~------~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          105 DSNDRERVQESADELQKMLQEDELRD------AVLLVFANKQDMPNA  145 (192)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTC
T ss_pred             ECCCHHHHHHHHHHHHHHhcccccCC------CeEEEEEECCCCCCC
Confidence            99999999999999998875432 22      689999999999763

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.66  E-value=8.4e-21  Score=144.05  Aligned_cols=127  Identities=17%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.+|++..+ ...+.++ +..+    |||+|+++|..+...+++++|+++
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            468997 9999999   665555 556677788887555 4555666 5554    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC------------CCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR------------EVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r------------~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++. .|+..+....+.       .|+++||||+|+.+.+            .++.+++.+++++.+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~-------~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  177 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  177 (204)
Confidence            999999999999996 899988876543       6889999999997643            778888888887654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.78  E-value=6.1e-19  Score=130.84  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+.|||   ++.++.......+.||++..  .+.+.++ +..+  ||++|++++..++..+++++|++++||
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYK-NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV   93 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEET-TEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEEC-CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            478997 9999999   55555522226678888844  4566777 7666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      |+++++||+.+..|+..+.+.. ..+      .|+++|+||+|+.+  ..+.++..+.
T Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~--~~~~~~i~~~  143 (183)
T 1moz_A           94 DSTDKDRMSTASKELHLMLQEEELQD------AALLVFANKQDQPG--ALSASEVSKE  143 (183)
T ss_dssp             ETTCTTTHHHHHHHHHHHTTSSTTSS------CEEEEEEECTTSTT--CCCHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHcChhhCC------CeEEEEEECCCCCC--CCCHHHHHHH
Confidence            9999999999999998887653 222      68999999999976  3455555443

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.78  E-value=9.2e-19  Score=130.95  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=89.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+.+||   ++..+.......+.||++..  .+.+.++ +..+  |||+|++++..+...+++++|++++||
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~   97 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYK-NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV   97 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEET-TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEEC-CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence            468997 9999999   55555533234577888843  4566677 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      |+++++||+.+..|+..+.+... .+      .|+++|+||+|+.+.
T Consensus        98 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~  138 (189)
T 2x77_A           98 DSTDRDRMGVAKHELYALLDEDELRK------SLLLIFANKQDLPDA  138 (189)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCSTTTT------CEEEEEEECTTSTTC
T ss_pred             eCCCHHHHHHHHHHHHHHHhhhhcCC------CeEEEEEECCCCcCC
Confidence            99999999999999988876432 22      689999999999764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.76  E-value=4e-20  Score=146.07  Aligned_cols=128  Identities=17%  Similarity=0.103  Sum_probs=95.0

Q ss_pred             cCceeeEEE-EeCC---------CCc---eeEeeec----cCCCcccCcc-eeeeeEEEEE--------------ecCCC
Q psy15036         39 EFSFNFGTQ-LGRR---------GIP---LLKHLKY----LGTGTHGKTV-GIVFPAISVT--------------YSIGP   86 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~---------gvG---~~~~~~~----~~~~~~~~Ti-~~~~~~k~v~--------------~~~~~   86 (179)
                      .....+||+ +|++         +||   ++.++..    .+...+.||+ +.++..+.+.              ++ +.
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~   93 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED-CV   93 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC-Cc
Confidence            455689998 9999         999   6666553    3556677775 5555433322              23 34


Q ss_pred             ee----ee-----------------------CCCchhchhhhhhhhc---------------------CCcEEEEEEeCC
Q psy15036         87 RY----FR-----------------------FPLVSRFLSLTTGLYR---------------------GTMGFLLIFDVT  118 (179)
Q Consensus        87 ~i----wD-----------------------t~G~e~~~~~~~~~~~---------------------~~~~vilvyDit  118 (179)
                      .+    ||                       ++|+++|..++..||+                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            33    99                       8899999999999998                     899999999999


Q ss_pred             Ch--hhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        119 NE--NSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       119 ~~--~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      ++  +||+++..|+.++.+. ...+      .|++|||||+||.++|.+  +++++++++
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~------~piilV~NK~Dl~~~~~v--~~~~~~~~~  225 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTK------KPIVVVLTKCDEGVERYI--RDAHTFALS  225 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTT------CCEEEEEECGGGBCHHHH--HHHHHHHHT
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCC------CCEEEEEEcccccccHHH--HHHHHHHHh
Confidence            99  9999999999999876 3233      688999999999877776  688888865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.72  E-value=6.2e-18  Score=129.25  Aligned_cols=122  Identities=12%  Similarity=0.114  Sum_probs=93.3

Q ss_pred             CceeeEEE-EeCCCCc---eeEeeec-cCCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcC--
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLKY-LGTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRG--  107 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~~-~~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~--  107 (179)
                      ....+||+ +|+.|||   ++..+.. .+..   .+.+|++.++       . +..+  ||++|+++++.....|++.  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-GSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------G-GSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------e-CceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            34578997 9999999   5555553 2222   3556665443       3 3334  9999999999999999988  


Q ss_pred             --CcEEEEEEeCC-ChhhHHHHHHHHHHHHHHh----CCccCccccceEEEEeeCCCcCCCCCCC------HHHHHHHHh
Q psy15036        108 --TMGFLLIFDVT-NENSFKDVEKWLLQIKVMD----GALFTHFELQIVFMRGCLELLQRCREVV------TPDQIMFGS  174 (179)
Q Consensus       108 --~~~vilvyDit-~~~Sf~~l~~w~~~i~~~~----~~~~~~~~~~~iilvGnK~Dl~~~r~Vs------~~e~~~~a~  174 (179)
                        ++++|+|||++ ++++|..+..|+.++....    ..+      .|+++|+||+|+.+.+.++      .+++..++.
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~  154 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG------IDILIACNKSELFTARPPSKIKDALESEIQKVIE  154 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC------CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC------CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence              89999999999 9999999999999887653    233      6899999999998877766      566777765


Q ss_pred             h
Q psy15036        175 T  175 (179)
Q Consensus       175 ~  175 (179)
                      +
T Consensus       155 ~  155 (218)
T 1nrj_B          155 R  155 (218)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.71  E-value=1.4e-17  Score=126.88  Aligned_cols=112  Identities=9%  Similarity=-0.027  Sum_probs=80.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchh-hhhhhhcCCcE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLS-LTTGLYRGTMG  110 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~-~~~~~~~~~~~  110 (179)
                      ..+||+ +|+.|||   ++.++. ..+.+.+.++ +.++.  .+.++ +.   .+  |||+|+++|.. +...|++++++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEec-CCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            468997 9999999   666655 4466666544 44444  36666 43   23  99999999998 88999999999


Q ss_pred             EEEEEeCCChh-hHHHHHH-HHHHHHHHh--CCccCccccceEEEEeeCCCcCCCCC
Q psy15036        111 FLLIFDVTNEN-SFKDVEK-WLLQIKVMD--GALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus       111 vilvyDit~~~-Sf~~l~~-w~~~i~~~~--~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      +|+|||+++.+ ++..+.. |...+....  ..+      .|++|||||+||.+.+.
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~  132 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS------PSLLIACNKQDIAMAKS  132 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC------CEEEEEEECTTSTTCCC
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccC------CCEEEEEECCCCCCccc
Confidence            99999999954 5776655 444444322  222      68999999999976543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.70  E-value=4.4e-17  Score=133.26  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=82.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+.+||   ++.++.........||++..+.  .+... +..+  |||+|+++|..+...+++.+|++|+||
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~  240 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV  240 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEET-TEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecC-cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            357997 9999999   5655553322334578886653  45556 6566  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      |+++++||+.+..|+..+.+... .+      .|++|||||+|+.+.+
T Consensus       241 D~~~~~s~~~~~~~~~~~~~~~~~~~------~piilV~NK~Dl~~~~  282 (329)
T 3o47_A          241 DSNDRERVNEAREELMRMLAEDELRD------AVLLVFANKQDLPNAM  282 (329)
T ss_dssp             ETTCSSSHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTCC
T ss_pred             ECCchHHHHHHHHHHHHHHhhhccCC------CeEEEEEECccCCccc
Confidence            99999999999988887765432 22      6899999999997643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=3.5e-17  Score=120.27  Aligned_cols=121  Identities=12%  Similarity=0.035  Sum_probs=86.2

Q ss_pred             eeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc--C
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR--G  107 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~--~  107 (179)
                      .+||+ +|++|||   +++.+.+ .+...+.|+.+.+.....+.++ +..+  |||+|+++|.      .+...|++  +
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            47887 9999999   6666553 3333445665556666677777 7666  9999999885      45577886  8


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++++++|||.++.++   ...|+.++.+.   +      .|+++||||+|+.+.+.++. ++.+++++.+
T Consensus        82 ~~~~i~v~D~~~~~~---~~~~~~~~~~~---~------~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~  138 (165)
T 2wji_A           82 PDLVVNIVDATALER---NLYLTLQLMEM---G------ANLLLALNKMDLAKSLGIEI-DVDKLEKILG  138 (165)
T ss_dssp             CSEEEEEEETTCHHH---HHHHHHHHHHT---T------CCEEEEEECHHHHHHTTCCC-CHHHHHHHHT
T ss_pred             CCEEEEEecCCchhH---hHHHHHHHHhc---C------CCEEEEEEchHhccccChhh-HHHHHHHHhC
Confidence            999999999998654   45688777652   2      57899999999987777764 5777777653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.66  E-value=8.7e-17  Score=139.12  Aligned_cols=127  Identities=12%  Similarity=0.043  Sum_probs=93.6

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEE------EEecC---CCee--eeCCCchhchhhhhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAIS------VTYSI---GPRY--FRFPLVSRFLSLTTGL  104 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~------v~~~~---~~~i--wDt~G~e~~~~~~~~~  104 (179)
                      ...+||+ +|+++||   ++..+. ..+...+.+|+|.++..+.      +.++.   +..+  ||++|++.|..+...|
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            4579997 9999999   555555 4566788899998876542      22220   1233  9999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++++++|+|||+++.   +.+..|+.++....+.       .|+++||||+|+.+.+.++.+++++++...+
T Consensus       119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~-------~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~  181 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGK-------SPVIVVMNKIDENPSYNIEQKKINERFPAIE  181 (535)
T ss_dssp             HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSS-------CCEEEEECCTTTCTTCCCCHHHHHHHCGGGT
T ss_pred             ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCC-------CCEEEEEECCCcccccccCHHHHHHHHHhcC
Confidence            9999999999999765   5667899999988754       5889999999999889999999998887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.65  E-value=2.1e-16  Score=116.42  Aligned_cols=105  Identities=11%  Similarity=0.014  Sum_probs=80.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ..+||+ +|+.|||   ++..+. ..+...+.++++.++..+.+.++ +..+  |||+|+++|..+...+++.+|++++|
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   85 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEAFTTMRARGAQVTDIVILV   85 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence            478997 9999999   555555 44556666776666666677788 7777  99999999999999999999999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        115 FDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       115 yDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ||+++   +++++.+.       .....+      .|+++|+||+|+.+
T Consensus        86 ~d~~~~~~~~~~~~l~-------~~~~~~------~p~ilv~nK~Dl~~  121 (178)
T 2lkc_A           86 VAADDGVMPQTVEAIN-------HAKAAN------VPIIVAINKMDKPE  121 (178)
T ss_dssp             EETTCCCCHHHHHHHH-------HHGGGS------CCEEEEEETTTSSC
T ss_pred             EECCCCCcHHHHHHHH-------HHHhCC------CCEEEEEECccCCc
Confidence            99998   55554432       222223      58899999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.8e-16  Score=117.57  Aligned_cols=110  Identities=14%  Similarity=0.153  Sum_probs=79.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeecc-CCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcC---
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYL-GTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRG---  107 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~-~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~---  107 (179)
                      ...+||+ +|+.|||   ++..+... +..   .+.++++.++       . +..+  |||+|++.+......+++.   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-GSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C-CTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c-CCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            4578997 9999999   55555532 222   2334443222       3 3444  9999999998888888887   


Q ss_pred             -CcEEEEEEeCC-ChhhHHHHHHHHHHHHHHhC----CccCccccceEEEEeeCCCcCCCCCC
Q psy15036        108 -TMGFLLIFDVT-NENSFKDVEKWLLQIKVMDG----ALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       108 -~~~vilvyDit-~~~Sf~~l~~w~~~i~~~~~----~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                       +|++|+|||++ ++++|..+..|+..+.....    ..      .|+++|+||+|+.+.+.+
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG------IDILIACNKSELFTARPP  174 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTC------CCEEEEEECTTSTTCCCH
T ss_pred             cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccC------CCEEEEEEchHhcCCCCH
Confidence             89999999999 99999999999988875532    23      689999999999876655

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.64  E-value=3.9e-16  Score=126.17  Aligned_cols=108  Identities=15%  Similarity=-0.022  Sum_probs=84.4

Q ss_pred             eeEeeeccCC-CcccCcceeeeeEEEEEecCCCee-eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHH
Q psy15036         55 LLKHLKYLGT-GTHGKTVGIVFPAISVTYSIGPRY-FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLL  131 (179)
Q Consensus        55 ~~~~~~~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~  131 (179)
                      +.++..+.|. +.+.||+|..+. ..+..+ +... ||+  |++|+.+++.||+++|++|+|||+++++ ||+.+..|+.
T Consensus        34 ~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~  109 (301)
T 1u0l_A           34 ILCKLRGKFRLQNLKIYVGDRVE-YTPDET-GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV  109 (301)
T ss_dssp             EEEEECGGGTTTTCCCCTTCEEE-EECCCS-SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred             EEEEEcccccccCCCCCCccEEE-EEEcCC-CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence            4444457788 899999995543 333333 4333 999  9999999999999999999999999998 7999999999


Q ss_pred             HHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        132 QIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       132 ~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      .++.  . +      .|++|||||+||.+++++  ++++++++...
T Consensus       110 ~~~~--~-~------~piilv~NK~DL~~~~~v--~~~~~~~~~~~  144 (301)
T 1u0l_A          110 LAEK--N-E------LETVMVINKMDLYDEDDL--RKVRELEEIYS  144 (301)
T ss_dssp             HHHH--T-T------CEEEEEECCGGGCCHHHH--HHHHHHHHHHT
T ss_pred             HHHH--C-C------CCEEEEEeHHHcCCchhH--HHHHHHHHHHh
Confidence            8765  2 2      588999999999876655  56777776643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.63  E-value=4.1e-16  Score=130.56  Aligned_cols=92  Identities=8%  Similarity=-0.044  Sum_probs=74.6

Q ss_pred             CCCcccCc-----------ceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----------
Q psy15036         63 GTGTHGKT-----------VGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----------  119 (179)
Q Consensus        63 ~~~~~~~T-----------i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----------  119 (179)
                      +.++|.||           +|+++  +.+.++ +..+  |||+||++|+.++..||++++++|+|||+++          
T Consensus       186 ~~~~Y~PT~~Dil~~r~~TiGi~~--~~~~~~-~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~  262 (402)
T 1azs_C          186 KQDDYVPSDQDLLRCRVLTSGIFE--TKFQVD-KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ  262 (402)
T ss_dssp             TCTTCCCCHHHHHHCCCCCCSEEE--EEEEET-TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSC
T ss_pred             hccccCCccccccccccceeeeEE--EEeecC-CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccc
Confidence            45667765           45443  456667 6555  9999999999999999999999999999999          


Q ss_pred             hhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCC
Q psy15036        120 ENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus       120 ~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      ++||+++..|++.+.... ..+      .|++|||||+||.++|.
T Consensus       263 ~ns~~e~~~~~~~i~~~~~~~~------~piiLvgNK~DL~~~ki  301 (402)
T 1azs_C          263 TNRLQEALNLFKSIWNNRWLRT------ISVILFLNKQDLLAEKV  301 (402)
T ss_dssp             SBHHHHHHHHHHHHHTCTTCSS------CCEEEEEECHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccCCC------CeEEEEEEChhhhhhhh
Confidence            999999999999988653 233      68999999999966543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=2.6e-16  Score=117.20  Aligned_cols=121  Identities=12%  Similarity=0.030  Sum_probs=90.0

Q ss_pred             eeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc--C
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR--G  107 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~--~  107 (179)
                      .+||+ +|+.|||   ++..+.+ .+...+.|++..+.....+.++ +..+  |||+|++++.      .+...|++  .
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   85 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC-CcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence            58897 9999999   5555553 2333445666666666777777 7666  9999999885      45677776  4


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++++++|+|.++   +++...|+.++.+   .+      +|+++|+||+|+.+.+.++ +++.+++++.+
T Consensus        86 ~~~~i~v~d~~~---~~~~~~~~~~~~~---~~------~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~  142 (188)
T 2wjg_A           86 PDLVVNIVDATA---LERNLYLTLQLME---MG------ANLLLALNKMDLAKSLGIE-IDVDKLEKILG  142 (188)
T ss_dssp             CSEEEEEEEGGG---HHHHHHHHHHHHT---TT------CCEEEEEECHHHHHHTTCC-CCHHHHHHHHT
T ss_pred             CCEEEEEecchh---HHHHHHHHHHHHh---cC------CCEEEEEEhhhccccccch-HHHHHHHHHhC
Confidence            999999999875   6677788888765   22      5788999999998777776 46777777654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.62  E-value=2.3e-16  Score=117.36  Aligned_cols=122  Identities=8%  Similarity=0.011  Sum_probs=89.7

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCeeeeCCC-----------chhchhhhhhhhcC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPL-----------VSRFLSLTTGLYRG  107 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G-----------~e~~~~~~~~~~~~  107 (179)
                      +||+ +|+.|||   ++..+. ..+...+.|++...  ...+.+. .-.+|||+|           ++++..+...|+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   78 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence            6897 9999999   555554 44555556654432  3344444 333499999           88999999999998


Q ss_pred             -CcEEEEEEeCCChhhHHHH-HHHHHH--------HHH-HhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        108 -TMGFLLIFDVTNENSFKDV-EKWLLQ--------IKV-MDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       108 -~~~vilvyDit~~~Sf~~l-~~w~~~--------i~~-~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                       ++++++||++++.+||+++ ..|...        +.+ ....+      .|+++||||+|+.+.+   .+++++++++.
T Consensus        79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~---~~~~~~~~~~~  149 (190)
T 2cxx_A           79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD------IPTIVAVNKLDKIKNV---QEVINFLAEKF  149 (190)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT------CCEEEEEECGGGCSCH---HHHHHHHHHHH
T ss_pred             hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC------CceEEEeehHhccCcH---HHHHHHHHHHh
Confidence             9999999999999999998 788763        222 22223      6889999999998755   67788888776


Q ss_pred             C
Q psy15036        177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      +
T Consensus       150 ~  150 (190)
T 2cxx_A          150 E  150 (190)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.62  E-value=1.5e-15  Score=117.28  Aligned_cols=126  Identities=9%  Similarity=-0.048  Sum_probs=79.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCc------hh----chhhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLV------SR----FLSLTTGL  104 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~------e~----~~~~~~~~  104 (179)
                      ..+||+ +|+.|||   ++..+... +.....+....+.....+..+ +..+  |||+|+      ++    +..+ ..+
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~  105 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-LNKYQIIDTPGLLDRAFENRNTIEMTTI-TAL  105 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET-TEEEEEEECTTTTTSCGGGCCHHHHHHH-HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC-CCeEEEEECCCCcCcccchhhhHHHHHH-HHh
Confidence            468997 9999999   55555422 211111211122333344455 5555  999999      54    3333 346


Q ss_pred             hcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH---HHHHHHhhh
Q psy15036        105 YRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP---DQIMFGSTQ  176 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~---e~~~~a~~~  176 (179)
                      ++.++++|+|||++++.||+.  ...|+..+....+.       .|+++||||+|+.+.++++.+   ++.++++..
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  175 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSN-------KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV  175 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-C-------CCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcC-------CcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc
Confidence            889999999999999999863  23566665543222       688999999999888888875   456666543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.61  E-value=9.5e-16  Score=126.55  Aligned_cols=98  Identities=12%  Similarity=0.055  Sum_probs=79.1

Q ss_pred             CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHH
Q psy15036         69 KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----------ENSFKDVEKWLLQIKVM  136 (179)
Q Consensus        69 ~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----------~~Sf~~l~~w~~~i~~~  136 (179)
                      ||+|+..  ..+.++ +..+  ||++||++|+.++..||++++++|+|||+++          .++|++...|++.+...
T Consensus       179 ~T~Gi~~--~~~~~~-~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          179 KTTGIVE--THFTFK-DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             CCCSEEE--EEEEET-TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             ceeceEE--EEEeeC-CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            3556443  456666 6666  9999999999999999999999999999999          56799998898888764


Q ss_pred             hC-CccCccccceEEEEeeCCCcCCCC---------------CCCHHHHHHHHhh
Q psy15036        137 DG-ALFTHFELQIVFMRGCLELLQRCR---------------EVVTPDQIMFGST  175 (179)
Q Consensus       137 ~~-~~~~~~~~~~iilvGnK~Dl~~~r---------------~Vs~~e~~~~a~~  175 (179)
                      .. .+      .|++|+|||+||.+++               .++.+++.+|+.+
T Consensus       256 ~~~~~------~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~  304 (353)
T 1cip_A          256 KWFTD------TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC  304 (353)
T ss_dssp             GGGTT------SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHH
T ss_pred             ccccC------CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHH
Confidence            21 22      6899999999996443               4889999999874

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.60  E-value=9.1e-16  Score=113.66  Aligned_cols=110  Identities=10%  Similarity=-0.062  Sum_probs=79.3

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------h--hhhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------L--TTGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~--~~~~~~  106 (179)
                      .+||+ +|++|||   +++.+.....  ....++...++..+.+.++ +..+  |||+|++++..      +  ...+++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-GMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-CeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            47897 9999999   6666553211  1222333445666778888 7666  99999976421      1  124689


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++|++++|||++++.||+. ..|++.+.+....+      .|+++|+||+||.+
T Consensus        83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~------~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAK------LPITVVRNKADITG  129 (172)
T ss_dssp             TCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTT------CCEEEEEECHHHHC
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccC------CCEEEEEECccCCc
Confidence            9999999999999999874 57888887765444      68899999999954

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.59  E-value=2.4e-16  Score=130.14  Aligned_cols=99  Identities=12%  Similarity=-0.008  Sum_probs=73.7

Q ss_pred             EeeeccCCCcccCcceeeeeE---------EEEEecCC----Cee----eeCCCchhchhhhhhhhcCCcEEEEEEeCC-
Q psy15036         57 KHLKYLGTGTHGKTVGIVFPA---------ISVTYSIG----PRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT-  118 (179)
Q Consensus        57 ~~~~~~~~~~~~~Ti~~~~~~---------k~v~~~~~----~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit-  118 (179)
                      ..+...+.++|.||++..+..         ..+.++ +    ..+    |||+||++|+.++..||++++++|+|||++ 
T Consensus       140 ~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~-~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~  218 (354)
T 2xtz_A          140 ENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPV-GENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISE  218 (354)
T ss_dssp             TSHHHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCC-CE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGG
T ss_pred             HHHHHHhcCCCCCCchheeeecccccceeeEEEEec-cCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcc
Confidence            334444567788877533221         123344 3    333    999999999999999999999999999999 


Q ss_pred             ---------ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036        119 ---------NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       119 ---------~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                               +.++|+++..|++.+.+... .+      .|++|||||+||.+++
T Consensus       219 ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~------~piiLvgNK~DL~~~k  266 (354)
T 2xtz_A          219 YDQTLFEDEQKNRMMETKELFDWVLKQPCFEK------TSFMLFLNKFDIFEKK  266 (354)
T ss_dssp             TTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS------CEEEEEEECHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHHHHHhccccCC------CeEEEEEECcchhhhh
Confidence                     89999999999998876432 22      6899999999996543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.59  E-value=1.6e-15  Score=124.45  Aligned_cols=101  Identities=7%  Similarity=-0.081  Sum_probs=79.6

Q ss_pred             ccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q psy15036         67 HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT----------NENSFKDVEKWLLQIK  134 (179)
Q Consensus        67 ~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit----------~~~Sf~~l~~w~~~i~  134 (179)
                      +.+|+|+..  ..+.++ +..+  ||++||++|+.++..||++++++|+|||++          +.++|++...|+..+.
T Consensus       145 ~~~TiGi~~--~~~~~~-~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~  221 (340)
T 4fid_A          145 RTKTTGIHE--YDFVVK-DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM  221 (340)
T ss_dssp             CCCCCSCEE--EEEESS-SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred             ccceeeeEE--EEEEee-eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence            445677544  456667 7666  999999999999999999999999999999          8899999999988887


Q ss_pred             HHhC-CccCccccceEEEEeeCCCcCCCC---------------CCCHHHHHHHHhhh
Q psy15036        135 VMDG-ALFTHFELQIVFMRGCLELLQRCR---------------EVVTPDQIMFGSTQ  176 (179)
Q Consensus       135 ~~~~-~~~~~~~~~~iilvGnK~Dl~~~r---------------~Vs~~e~~~~a~~~  176 (179)
                      .... .+      .|++|+|||+||.++|               ....++|.+|+.++
T Consensus       222 ~~~~~~~------~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~  273 (340)
T 4fid_A          222 TNEFLKG------AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQL  273 (340)
T ss_dssp             HCGGGTT------SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHH
T ss_pred             hhhccCC------CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHh
Confidence            6432 22      6899999999996532               13577887776543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.58  E-value=3e-15  Score=122.29  Aligned_cols=99  Identities=10%  Similarity=0.016  Sum_probs=78.8

Q ss_pred             ccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q psy15036         67 HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT----------NENSFKDVEKWLLQIK  134 (179)
Q Consensus        67 ~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit----------~~~Sf~~l~~w~~~i~  134 (179)
                      ..||+|+.  ...+.++ +..+  ||++||++++.++..||++++++|+|||++          +.++|++...|++.+.
T Consensus       151 r~~TiGi~--~~~~~~~-~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~  227 (327)
T 3ohm_A          151 RVPTTGII--EYPFDLQ-SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII  227 (327)
T ss_dssp             CCCCCSEE--EEEEEET-TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred             cCceeeEE--EEEEEee-ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence            45677753  3456666 6666  999999999999999999999999999655          7788888888888876


Q ss_pred             HHhC-CccCccccceEEEEeeCCCcCCCC----------------CCCHHHHHHHHh
Q psy15036        135 VMDG-ALFTHFELQIVFMRGCLELLQRCR----------------EVVTPDQIMFGS  174 (179)
Q Consensus       135 ~~~~-~~~~~~~~~~iilvGnK~Dl~~~r----------------~Vs~~e~~~~a~  174 (179)
                      .... .+      .|++|+|||+||.++|                .++.++|.+|..
T Consensus       228 ~~~~~~~------~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~  278 (327)
T 3ohm_A          228 TYPWFQN------SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL  278 (327)
T ss_dssp             TSGGGTT------CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHH
T ss_pred             hhhccCC------ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHH
Confidence            5432 22      6899999999997765                689999999954

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.57  E-value=4e-15  Score=111.27  Aligned_cols=113  Identities=11%  Similarity=-0.040  Sum_probs=76.6

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhhhhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSLTTGL  104 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~~~~~  104 (179)
                      +..+||+ +|+.|||   ++..+... +...+.++.+.+.......++ +.-. |||+|          ++.+..+...|
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence            3578997 9999999   66665533 455666776655554555566 5444 99999          88999999999


Q ss_pred             hcCC---cEEEEEEeCCChhhHHHHH--HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCH
Q psy15036        105 YRGT---MGFLLIFDVTNENSFKDVE--KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVT  166 (179)
Q Consensus       105 ~~~~---~~vilvyDit~~~Sf~~l~--~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~  166 (179)
                      ++.+   +++++|||++++.++....  .|+..      ..      .|+++|+||+|+.+.+++..
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~------~p~i~v~nK~Dl~~~~~~~~  154 (195)
T 1svi_A          100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YG------IPVIVIATKADKIPKGKWDK  154 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TT------CCEEEEEECGGGSCGGGHHH
T ss_pred             HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cC------CCEEEEEECcccCChHHHHH
Confidence            9888   9999999999998888753  34322      22      58899999999987666543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.56  E-value=4.4e-15  Score=122.96  Aligned_cols=96  Identities=9%  Similarity=-0.065  Sum_probs=71.7

Q ss_pred             cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHh
Q psy15036         70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----------ENSFKDVEKWLLQIKVMD  137 (179)
Q Consensus        70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----------~~Sf~~l~~w~~~i~~~~  137 (179)
                      |+|+..  +.+.++ +..+  ||++||++++..+..||++++++|+|||+++          .++|+++..|++.+....
T Consensus       188 T~Gi~~--~~~~~~-~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~  264 (362)
T 1zcb_A          188 TKGIHE--YDFEIK-NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  264 (362)
T ss_dssp             CSSEEE--EEEEET-TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             ccceEE--EEeeeC-CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence            456543  456667 6666  9999999999999999999999999999999          789999999999887642


Q ss_pred             -CCccCccccceEEEEeeCCCcCCCC----------------CCCHHHHHHHHh
Q psy15036        138 -GALFTHFELQIVFMRGCLELLQRCR----------------EVVTPDQIMFGS  174 (179)
Q Consensus       138 -~~~~~~~~~~~iilvGnK~Dl~~~r----------------~Vs~~e~~~~a~  174 (179)
                       ..+      .|+||+|||+||.+++                .++.+++.+|+.
T Consensus       265 ~~~~------~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~  312 (362)
T 1zcb_A          265 VFSN------VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV  312 (362)
T ss_dssp             GGTT------SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred             hhCC------CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHH
Confidence             222      6899999999996543                388999999873

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.55  E-value=1e-14  Score=108.70  Aligned_cols=122  Identities=13%  Similarity=0.026  Sum_probs=87.1

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhhhhhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSLTTGLY  105 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~~~~~~  105 (179)
                      ...+||+ +|+.|||   ++..+.......+.++.+.+........+ .... |||+|          ++.+..+...|+
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN-SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF   99 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET-TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC-CcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence            4578997 9999999   66666654445566666655544444444 4444 99999          888989999999


Q ss_pred             cCC---cEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHhh
Q psy15036        106 RGT---MGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGST  175 (179)
Q Consensus       106 ~~~---~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~~  175 (179)
                      +.+   +++++|+|.++..+  +..+..|+...      +      .|+++|+||+|+.+  ++++..+++++++..
T Consensus       100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~  164 (195)
T 3pqc_A          100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------N------IPFTIVLTKMDKVKMSERAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------T------CCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred             hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------C------CCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence            887   99999999988644  44445565443      2      58899999999954  345666777777765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.52  E-value=9.7e-15  Score=105.57  Aligned_cols=107  Identities=11%  Similarity=-0.057  Sum_probs=69.6

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchh-------chhhhhhhhcCC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR-------FLSLTTGLYRGT  108 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~-------~~~~~~~~~~~~  108 (179)
                      .||+ +|+.|||   ++.++.....  ....++...+.....+..+ +..+  |||+|++.       +......+++.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD-RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET-TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC-CceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            5887 9999999   5555553321  1222333344555667777 7776  99999987       345667789999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      |++++|||++++.+...  .|+....+.  .+      .|+++||||+|+.+.
T Consensus        81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~------~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQAD--YEVAEYLRR--KG------KPVILVATKVDDPKH  123 (161)
T ss_dssp             SEEEEEEESSSCCCHHH--HHHHHHHHH--HT------CCEEEEEECCCSGGG
T ss_pred             CEEEEEEECCCcccHhH--HHHHHHHHh--cC------CCEEEEEECcccccc
Confidence            99999999998655432  333333222  12      578999999999764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.48  E-value=4.6e-14  Score=111.61  Aligned_cols=122  Identities=14%  Similarity=0.026  Sum_probs=85.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhhhhh--c
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTTGLY--R  106 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~~~~--~  106 (179)
                      ..+||+ +|+.|||   ++..+.+ .+.....|.+..+.....+... +..+  |||+|++++..      +.+.|+  .
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC-CeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            468997 9999999   5555553 2222333444445555556666 6566  99999998865      346676  5


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|++++|+|.++.++..   .|..++.+.   .      .|+++|+||+|+.+++.++. ++.++++..+
T Consensus        83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~------~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg  140 (258)
T 3a1s_A           83 DADLVILVADSVNPEQSL---YLLLEILEM---E------KKVILAMTAIDEAKKTGMKI-DRYELQKHLG  140 (258)
T ss_dssp             CCSEEEEEEETTSCHHHH---HHHHHHHTT---T------CCEEEEEECHHHHHHTTCCB-CHHHHHHHHC
T ss_pred             CCCEEEEEeCCCchhhHH---HHHHHHHhc---C------CCEEEEEECcCCCCccchHH-HHHHHHHHcC
Confidence            899999999999976543   466666543   2      58899999999987777764 4677777654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.44  E-value=7e-14  Score=118.13  Aligned_cols=120  Identities=9%  Similarity=-0.089  Sum_probs=84.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCc----------hhchhhhh-
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV----------SRFLSLTT-  102 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~----------e~~~~~~~-  102 (179)
                      ..+||+ +|+++||   ++..+.+...  ....++...+.....+.++ +..+  |||+|+          |+|..++. 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-QQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET-TEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC-CeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            468997 9999999   6655553221  1222333344555667777 7777  999998          77766655 


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      .+++.+|++++|||.++..+++.+ .|+..+.+.   .      .|+++|+||+|+.+++.++.++..+.
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~------~~iiiv~NK~Dl~~~~~~~~~~~~~~  312 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---G------KAVVIVVNKWDAVDKDESTMKEFEEN  312 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---T------CEEEEEEECGGGSCCCTTHHHHHHHH
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---C------CcEEEEEECccCCCcchHHHHHHHHH
Confidence            488999999999999999999886 577776542   2      58899999999988777776665443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.43  E-value=6.2e-13  Score=105.03  Aligned_cols=121  Identities=11%  Similarity=0.018  Sum_probs=83.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhc------
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYR------  106 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~------  106 (179)
                      ..+||+ +|..|+|   ++..+.+..   ...+.++ ........+..+ +..+  |||+|++++......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMG-GFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEEC-CeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            468997 9999999   555554322   2222222 122333455666 6666  999999988776666665      


Q ss_pred             ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHH
Q psy15036        107 ---GTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ  169 (179)
Q Consensus       107 ---~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~  169 (179)
                         ++|++++|+|++... |... ..|++.+.+..+...    ..|+++|+||+|+...+..+.++.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~----~~~~ivv~nK~Dl~~~~~~~~e~~  174 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEI----WCKTLLVLTHAQFSPPDELSYETF  174 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGG----GGGEEEEEECTTCCCSTTCCHHHH
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhh----hcCEEEEEeCcccCCCCCccHHHH
Confidence               889999999998766 5554 588888887765431    137889999999976666666553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.41  E-value=3.8e-13  Score=104.51  Aligned_cols=130  Identities=9%  Similarity=-0.039  Sum_probs=77.2

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeec-cCCCcccC--cceeeeeEEEEEecCCCee--eeCCC-----------chhchhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGK--TVGIVFPAISVTYSIGPRY--FRFPL-----------VSRFLSL  100 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~--Ti~~~~~~k~v~~~~~~~i--wDt~G-----------~e~~~~~  100 (179)
                      +..+||+ +|..|||   ++..+.+ .+.....+  ++..++....+.++ +..+  |||+|           ++.+...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET-TEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC-CceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            3478997 9999999   5555553 22233333  33334445566677 7676  99999           4455566


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC------HHHHHHHHh
Q psy15036        101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV------TPDQIMFGS  174 (179)
Q Consensus       101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs------~~e~~~~a~  174 (179)
                      ...+++++|++|+|+|+++..+  ....|+..+.+..+..    ...|+++|+||+|+.+.+.+.      .++.+++++
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~----~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGER----ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHH----HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhh----ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            6667788999999999986544  2234444444332211    003788899999997666555      346677766


Q ss_pred             hhC
Q psy15036        175 TQS  177 (179)
Q Consensus       175 ~~~  177 (179)
                      +.+
T Consensus       180 ~~~  182 (239)
T 3lxx_A          180 IFG  182 (239)
T ss_dssp             HHS
T ss_pred             HcC
Confidence            654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.41  E-value=1.4e-13  Score=109.70  Aligned_cols=120  Identities=10%  Similarity=-0.055  Sum_probs=81.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc--CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc-
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL--GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR-  106 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~--~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~-  106 (179)
                      ..+||+ +|++|||   ++..+.+.  +...+ |  |.++..+...+..+..+  |||+|++++.      .+.+.|++ 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~-p--g~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNW-P--GVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS-S--CCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCC-C--CCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357897 9999999   66666532  22222 3  33332334444412223  9999999886      46677887 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        107 -GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       107 -~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                       ++|++++|||.++.+++   ..|..++.+.   .      .|+++|+||+|+.+.+.++ .++.++++..+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~------~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg  137 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIET---G------IPVTIALNMIDVLDGQGKK-INVDKLSYHLG  137 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHHT---C------SCEEEEEECHHHHHHTTCC-CCHHHHHHHHT
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHhc---C------CCEEEEEEChhhCCcCCcH-HHHHHHHHHcC
Confidence             59999999999987655   3566666552   2      5888999999997766666 46677776654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.41  E-value=2.2e-13  Score=115.73  Aligned_cols=125  Identities=9%  Similarity=-0.101  Sum_probs=88.3

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCC----------chhchhhhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPL----------VSRFLSLTT  102 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G----------~e~~~~~~~  102 (179)
                      ...+||+ +|+.+||   ++..+.+..  .....++...+.....+.++ +..+  |||+|          +++|..++.
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-QQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET-TEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC-CceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            4578997 9999999   555555321  12223333344545667777 7777  99999          899988776


Q ss_pred             h-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        103 G-LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       103 ~-~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      . +++.+|++++|+|.++.-+ +....|...+.+   ..      .|+++|+||+|+.++++++.+++.+.+++.
T Consensus       272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~  336 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AG------KAVVIVVNKWDAVDKDESTMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TT------CEEEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred             HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cC------CCEEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence            4 7899999999999987543 223456666554   22      488899999999988899999998888765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.41  E-value=8.8e-14  Score=109.91  Aligned_cols=118  Identities=9%  Similarity=-0.020  Sum_probs=83.1

Q ss_pred             EEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh----------hhhhhh--
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS----------LTTGLY--  105 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~----------~~~~~~--  105 (179)
                      ||+ +|+.|||   ++..+.+. +.....|++..+.....+.++ +..+  |||+|+..+..          +.+.|+  
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-TEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            676 9999999   55555532 223344566666777778888 7776  99999988764          567788  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      +++|++|+|+|.++.+++..+..|+.+      ..      .|+++|+||+|+.+.+.+... ...+++..
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l~~~l~~------~~------~pvilv~NK~Dl~~~~~~~~~-~~~l~~~l  139 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYLTSQLFE------LG------KPVVVALNMMDIAEHRGISID-TEKLESLL  139 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHHHHHHTT------SC------SCEEEEEECHHHHHHTTCEEC-HHHHHHHH
T ss_pred             CCCCEEEEEeeCCCchhHHHHHHHHHH------cC------CCEEEEEEChhcCCcCCcHHH-HHHHHHHc
Confidence            899999999999998777765554332      12      588999999999765554432 33354443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.40  E-value=2.3e-13  Score=107.95  Aligned_cols=122  Identities=10%  Similarity=-0.011  Sum_probs=85.9

Q ss_pred             eeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhhhhh--cC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTTGLY--RG  107 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~~~~--~~  107 (179)
                      .+||+ +|++|||   ++..+.+. +.....|+++.+.....+.++ +..+  |||+|+..+..      +.+.|+  .+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-EKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET-TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC-CceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            57897 9999999   55555532 333455666667777777777 7776  99999998876      677777  68


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|++++|+|.++.+   ....|..++.+...        .|+++|+||+|+.+.+.+..+ ...+++..+
T Consensus        82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~~~--------~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg  139 (271)
T 3k53_A           82 ADVIVDIVDSTCLM---RNLFLTLELFEMEV--------KNIILVLNKFDLLKKKGAKID-IKKMRKELG  139 (271)
T ss_dssp             CSEEEEEEEGGGHH---HHHHHHHHHHHTTC--------CSEEEEEECHHHHHHHTCCCC-HHHHHHHHS
T ss_pred             CcEEEEEecCCcch---hhHHHHHHHHhcCC--------CCEEEEEEChhcCcccccHHH-HHHHHHHcC
Confidence            99999999999853   33445555554321        478899999999765555543 555655543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.39  E-value=2.8e-13  Score=107.85  Aligned_cols=120  Identities=6%  Similarity=-0.043  Sum_probs=81.1

Q ss_pred             eeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh----------hhhhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS----------LTTGLY  105 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~----------~~~~~~  105 (179)
                      .+||+ +|+.|+|   ++..+.+. +.....|++..+.....+.+. +..+  |||+|++.+..          +...|+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS-SCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC-CCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            57897 9999999   55555532 222344555556666777777 7777  99999988762          234444


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        106 --RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       106 --~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                        +.+|++|+|+|.++.+++..+..|   +.+.   +      .|+++|+||+|+.+.+.+.. +..++++..
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~------~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~l  141 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQ---LLEL---G------IPCIVALNMLDIAEKQNIRI-EIDALSARL  141 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---T------CCEEEEEECHHHHHHTTEEE-CHHHHHHHH
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHH---HHhc---C------CCEEEEEECccchhhhhHHH-HHHHHHHhc
Confidence              799999999999997766554444   4433   2      58889999999976554432 234454443

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.39  E-value=8.4e-13  Score=111.29  Aligned_cols=122  Identities=11%  Similarity=-0.072  Sum_probs=80.2

Q ss_pred             CceeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCC-ee--eeCCCchhchhh-------hhh
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSRFLSL-------TTG  103 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~~~~~-------~~~  103 (179)
                      ....+||+ +|..++|   ++..+....  .....+....+...+.+.+. +. .+  |||+|++.|..+       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence            45678997 9999999   555555321  11222223334555677777 55 55  999999988655       355


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      +++++|++|+|||.+..+.   ...|+..+.+.   +      .|+++|+||+|+.+.+..  +++++++++.
T Consensus       110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~------~piIvV~NK~Dl~~~~~~--~~~~~l~~~~  168 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM---E------IPFVVVVNKIDVLGEKAE--ELKGLYESRY  168 (423)
T ss_dssp             HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---T------CCEEEECCCCTTTTCCCT--HHHHHSSCCT
T ss_pred             HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---C------CCEEEEEeCcCCCCccHH--HHHHHHHHHc
Confidence            8999999999999944433   35677777665   2      588999999999876655  5566665443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.38  E-value=4.7e-13  Score=114.37  Aligned_cols=113  Identities=9%  Similarity=-0.099  Sum_probs=66.0

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhh--------hhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLT--------TGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~--------~~~~~  106 (179)
                      .+||+ +|..+||   ++..+....  .....++...++....+.++ +..+  |||+|++++....        ..+++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~  311 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA  311 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEET-TEEEEEEC--------------------CCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence            57897 9999999   555555331  12223333345556777888 8777  9999998876433        44789


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      .+|++++|||.+++.+++++..+...+.... .       .|+++|+||+|+...+.+
T Consensus       312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~-------~piIvV~NK~Dl~~~~~~  361 (476)
T 3gee_A          312 EADLILYLLDLGTERLDDELTEIRELKAAHP-A-------AKFLTVANKLDRAANADA  361 (476)
T ss_dssp             SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T-------SEEEEEEECTTSCTTTHH
T ss_pred             cCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C-------CCEEEEEECcCCCCccch
Confidence            9999999999999999876555444444333 2       588999999999876554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.36  E-value=1.6e-12  Score=105.13  Aligned_cols=124  Identities=14%  Similarity=-0.052  Sum_probs=85.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCC----cccCcceeeeeEEEEEecCCCee--eeCCCchhch----------hhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTG----THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----------SLT  101 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~----~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----------~~~  101 (179)
                      ..-+|. +|.+|||   ++..+.+....    ....|..  .....+..+.+..+  |||+|+.++.          ...
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~--~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM--RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS--CEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee--EEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            356675 9999999   66665543222    1122222  11122222202334  9999996544          667


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ..+++.+|++++|+|.++..++.....|++.+.+.   +      .|+++|+||+|+.+.+....+...++++..
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~------~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~  152 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---N------KPVIVVINKIDKIGPAKNVLPLIDEIHKKH  152 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---C------CCEEEEEECGGGSSSGGGGHHHHHHHHHHC
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---C------CCEEEEEECccCCCCHHHHHHHHHHHHHhc
Confidence            78899999999999999999999998888887762   2      588899999999755677777777777664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.35  E-value=4.4e-12  Score=99.57  Aligned_cols=113  Identities=11%  Similarity=0.002  Sum_probs=70.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc--CCCcccCc-ceeeeeEEEEEecCCCee--eeCCCchhchh-----------hh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL--GTGTHGKT-VGIVFPAISVTYSIGPRY--FRFPLVSRFLS-----------LT  101 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~--~~~~~~~T-i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-----------~~  101 (179)
                      ..+||+ +|..|+|   ++..+.+.  +...+.++ +..+.....+..+ +..+  |||+|+..+..           ..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-NREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-TEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-CCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            468997 9999999   55555522  34444443 3334444556667 7777  99999876532           22


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..+++++|++|+|||+++.....  ..++..+.+..+..   ...|++++++||+|+.+
T Consensus       100 ~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~---~~~~~i~vv~nK~Dl~~  153 (260)
T 2xtp_A          100 LLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED---AMGHTIVLFTHKEDLNG  153 (260)
T ss_dssp             HHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG---GGGGEEEEEECGGGGTT
T ss_pred             HhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch---hhccEEEEEEcccccCC
Confidence            33788999999999998622221  22223344333221   01167777778999975

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.28  E-value=1.1e-11  Score=100.09  Aligned_cols=110  Identities=10%  Similarity=0.057  Sum_probs=70.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCC--ccc-CcceeeeeEEEEEecCCCee--eeCCCchh--------chhhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTG--THG-KTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGL  104 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~--~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~  104 (179)
                      ...+|+ +|.+|||   ++..+.+....  ... .|.. ......+..+ +.++  |||+|+.+        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~~-~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEeC-CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            345676 9999999   66555533211  111 1221 1112233344 5555  99999876        55667788


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWL-LQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~-~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ++++|++++|||.+++.+..  ..|+ +.+.+..+ +      .|+++|+||+|+.+.+
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~-~------~p~ilV~NK~Dl~~~~  133 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVG-K------VPILLVGNKLDAAKYP  133 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTT-T------SCEEEEEECGGGCSSH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcC-C------CCEEEEEECcccCCch
Confidence            99999999999999875554  3554 44544322 2      5889999999997543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.27  E-value=1.1e-11  Score=98.13  Aligned_cols=121  Identities=7%  Similarity=-0.085  Sum_probs=76.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceee--eeEEEEEecCCCee--eeCCCchhchhhhhh-------h--
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIV--FPAISVTYSIGPRY--FRFPLVSRFLSLTTG-------L--  104 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~--~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~-------~--  104 (179)
                      ..+||+ +|..|+|   ++..+.+.......++.+..  .....+..+ +..+  |||+|++++..+...       |  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            478997 9999999   55555432211112222222  222233444 5555  999999877543321       2  


Q ss_pred             hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      .+.+|++++|||++.. +|... ..|++.+.+..+...    ..|+++|+||+|+...+.++.++
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~----~~~iivV~nK~Dl~~~~~~~~~~  176 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGI----WNKAIVALTHAQFSPPDGLPYDE  176 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGG----GGGEEEEEECCSCCCGGGCCHHH
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCccc----ccCEEEEEECcccCCcCCCCHHH
Confidence            3479999999999764 46554 488888877654320    13788999999997766666554

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.27  E-value=6.4e-13  Score=109.84  Aligned_cols=125  Identities=14%  Similarity=0.141  Sum_probs=74.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee--ccCCCcc--------cCcceeeeeEEEEEecCCCee----eeCCCc-------h
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK--YLGTGTH--------GKTVGIVFPAISVTYSIGPRY----FRFPLV-------S   95 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~--~~~~~~~--------~~Ti~~~~~~k~v~~~~~~~i----wDt~G~-------e   95 (179)
                      .+.+||+ +|+.|+|   ++..+.  ..+...+        .+|++.++....+..+ +..+    |||+|+       +
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~-~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEER-GVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecC-CcccceEEEEeccccccCccHH
Confidence            4578887 9999999   444432  2233322        3677766554444444 5432    999999       8


Q ss_pred             hchhhhh-------hhhcCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         96 RFLSLTT-------GLYRGTMGF-----------LLIFDVTN-ENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        96 ~~~~~~~-------~~~~~~~~v-----------ilvyDit~-~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      +|..+..       .|+++++++           +++|++++ ..++..+. .|++.+    ...      .|+|+|+||
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~------~piIlV~NK  183 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK------VNIVPVIAK  183 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-------SCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC------CCEEEEEEC
Confidence            8888877       888877665           48888887 77788775 455443    233      688999999


Q ss_pred             CCcCCCCCCCH--HHHHHHHhhh
Q psy15036        156 ELLQRCREVVT--PDQIMFGSTQ  176 (179)
Q Consensus       156 ~Dl~~~r~Vs~--~e~~~~a~~~  176 (179)
                      +|+...+++..  +++.++++++
T Consensus       184 ~Dl~~~~ev~~~k~~i~~~~~~~  206 (361)
T 2qag_A          184 ADTLTLKERERLKKRILDEIEEH  206 (361)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHC
Confidence            99987776665  6777776654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.26  E-value=1.6e-11  Score=105.05  Aligned_cols=88  Identities=6%  Similarity=-0.137  Sum_probs=57.3

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHH--HHHHHH---HHHHhCCccCccccceEE
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV--EKWLLQ---IKVMDGALFTHFELQIVF  150 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l--~~w~~~---i~~~~~~~~~~~~~~~ii  150 (179)
                      ..+... +..+  |||+|+++|......+++.+|++|+|+|.++.+++..+  ..|..+   +......       +++|
T Consensus       104 ~~~~~~-~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-------~~iI  175 (483)
T 3p26_A          104 SHFSTH-RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-------HNLI  175 (483)
T ss_dssp             EEEECS-SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-------CCEE
T ss_pred             EEEecC-CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-------CcEE
Confidence            345555 5666  99999999999999999999999999999998766542  122222   2222222       4688


Q ss_pred             EEeeCCCcCCCCCCCHHHHHHHH
Q psy15036        151 MRGCLELLQRCREVVTPDQIMFG  173 (179)
Q Consensus       151 lvGnK~Dl~~~r~Vs~~e~~~~a  173 (179)
                      +|+||+|+.+.++...++..+.+
T Consensus       176 vviNK~Dl~~~~~~~~~~i~~~~  198 (483)
T 3p26_A          176 IAMNKMDNVDWSQQRFEEIKSKL  198 (483)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHH
T ss_pred             EEEECcCcccchHHHHHHHHHHH
Confidence            99999999775555545444433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.24  E-value=1.5e-11  Score=103.89  Aligned_cols=105  Identities=14%  Similarity=0.035  Sum_probs=67.6

Q ss_pred             EEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchh---------chhhhhhhhcC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR---------FLSLTTGLYRG  107 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~---------~~~~~~~~~~~  107 (179)
                      ||+ +|.++||   ++.++.+...  ....|.+..+.....+.++ +..+  |||+|++.         +......++++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY-GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET-TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC-CeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            676 9999999   6666653321  1223333345556677778 8777  99999764         34566789999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +|++++|||.++..++..  .|+....+.. .       .|++||+||+|+.+
T Consensus        82 ad~il~V~D~~~~~~~~d--~~i~~~l~~~-~-------~p~ilv~NK~D~~~  124 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKED--ESLADFLRKS-T-------VDTILVANKAENLR  124 (439)
T ss_dssp             CSEEEEEEETTTCCCHHH--HHHHHHHHHH-T-------CCEEEEEESCCSHH
T ss_pred             CCEEEEEEECCCCCCHHH--HHHHHHHHHc-C-------CCEEEEEeCCCCcc
Confidence            999999999988666543  2333322222 2       47889999999854

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.24  E-value=2.7e-12  Score=108.44  Aligned_cols=96  Identities=7%  Similarity=-0.077  Sum_probs=67.7

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+... +..+  |||+|+++|......+++.+|++|+|+|.++ .+|+++..|..+.++..... .....+++++|+||+
T Consensus        78 ~~~~~-~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~-~~~~~~~iivviNK~  154 (435)
T 1jny_A           78 RFETK-KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILA-KTMGLDQLIVAVNKM  154 (435)
T ss_dssp             EEECS-SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHH-HHTTCTTCEEEEECG
T ss_pred             EEecC-CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHH-HHcCCCeEEEEEEcc
Confidence            44555 5666  9999999999888899999999999999999 89998877766655432100 000114678899999


Q ss_pred             CcCCC--C----CCCHHHHHHHHhhhC
Q psy15036        157 LLQRC--R----EVVTPDQIMFGSTQS  177 (179)
Q Consensus       157 Dl~~~--r----~Vs~~e~~~~a~~~~  177 (179)
                      |+.+.  +    +...++.++++++.+
T Consensus       155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~  181 (435)
T 1jny_A          155 DLTEPPYDEKRYKEIVDQVSKFMRSYG  181 (435)
T ss_dssp             GGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            99752  1    223456777766543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.24  E-value=1.2e-11  Score=101.53  Aligned_cols=121  Identities=11%  Similarity=0.058  Sum_probs=81.6

Q ss_pred             EEE-EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCC-Cee--eeCCCch----hchhhhhhhhcC---
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIG-PRY--FRFPLVS----RFLSLTTGLYRG---  107 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~-~~i--wDt~G~e----~~~~~~~~~~~~---  107 (179)
                      +|+ +|.++||   ++..+....  ...+. .|+...+  ..+.++ + ..+  ||++|+.    ++..+...|+++   
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            465 9999999   544444221  11222 3443333  245666 4 555  9999964    345566777765   


Q ss_pred             CcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        108 TMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       108 ~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      ++++|+|+|+++   +++++.+..|+.++..+.+..    ...|+++|+||+|+...+    ++.++++++.
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l----~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l  300 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL----TERPQIIVANKMDMPEAA----ENLEAFKEKL  300 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST----TTSCBCBEEECTTSTTHH----HHHHHHHHHC
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh----cCCCEEEEEECccCCCCH----HHHHHHHHHh
Confidence            999999999999   899999999999998875321    115788999999996532    3455665543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.23  E-value=3.8e-11  Score=98.83  Aligned_cols=122  Identities=13%  Similarity=-0.042  Sum_probs=81.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCC--c-ccCcceeeeeEEEEEecCCCee--eeCCCchhch---------hhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTG--T-HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL---------SLTTG  103 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~--~-~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~---------~~~~~  103 (179)
                      ..++|+ +|..|||   ++..+.+....  . ...|.+..  ...+... +..+  |||+|...+.         .....
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN--VGQFEDG-YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE--EEEEEET-TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee--EEEEEec-CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            457887 9999999   55555432211  1 12233322  2334444 5555  9999985432         11224


Q ss_pred             hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        104 LYRGTMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +...+|++++|+|+++..  +++....|+..+......       .|+++|+||+|+.+.+.+  +++.+++++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~-------~piilV~NK~Dl~~~~~~--~~~~~~~~~  307 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD-------LPFLVVINKIDVADEENI--KRLEKFVKE  307 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT-------SCEEEEECCTTTCCHHHH--HHHHHHHHH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC-------CCEEEEEECcccCChHHH--HHHHHHHHh
Confidence            566799999999999988  789889999999876543       588999999999765443  456666554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.23  E-value=5.9e-12  Score=106.32  Aligned_cols=107  Identities=7%  Similarity=-0.040  Sum_probs=63.9

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCCcccCcceee--eeEEEEEecCCCee--eeCCCch--------hchhhhhhhhcC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIV--FPAISVTYSIGPRY--FRFPLVS--------RFLSLTTGLYRG  107 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~--~~~k~v~~~~~~~i--wDt~G~e--------~~~~~~~~~~~~  107 (179)
                      .||+ +|.++||   ++.++.+.......++.|.+  .....+..+ +..+  |||+|++        ++......++++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC-SSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-CceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            5787 9999999   66666543333334455543  223344445 5555  9999986        677788889999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      +|++|+|+|.++..++..  .|+..+.+.  .+      .|++||+||+|+.+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~------~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TK------KPVVLAVNKLDNTEM  126 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHTT--CC------SCEEEEEECCCC---
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cC------CCEEEEEECccCccc
Confidence            999999999998877654  344443322  22      578999999999653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.21  E-value=1.7e-11  Score=104.89  Aligned_cols=115  Identities=10%  Similarity=-0.060  Sum_probs=80.9

Q ss_pred             eEEE-EeCCCCc---eeEeeecc---CCCcccCcceeeeeEEEEEecCCCee--eeCCCch-hchh--------hhhhhh
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYL---GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS-RFLS--------LTTGLY  105 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~---~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e-~~~~--------~~~~~~  105 (179)
                      +||+ +|.++||   +++.+...   ....+ |....++..+.+.++ +..+  |||+|+. ++..        ....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~-~gTT~d~~~~~i~~~-g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-PGTTRDVISEEIVIR-GILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCS-SCCSSCSCCEEEEET-TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCC-CCeeeeeEEEEEecC-CeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            8997 9999999   66555532   12233 323335556777888 8887  9999998 6542        245689


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      +.+|++|+|||++++.+++...-| +.+    ..       .|+++|+||+|+.+  .++.++..+++.
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~il-~~l----~~-------~piivV~NK~DL~~--~~~~~~~~~~~~  376 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRKIL-ERI----KN-------KRYLVVINKVDVVE--KINEEEIKNKLG  376 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH----TT-------SSEEEEEEECSSCC--CCCHHHHHHHHT
T ss_pred             hcccEEEEEecCCCCCCHHHHHHH-HHh----cC-------CCEEEEEECccccc--ccCHHHHHHHhc
Confidence            999999999999999998775433 222    22       47889999999975  356666666543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.21  E-value=1.8e-11  Score=103.62  Aligned_cols=84  Identities=7%  Similarity=-0.071  Sum_probs=57.8

Q ss_pred             cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHHhCCccCcc
Q psy15036         70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN---SFKDVEKWLLQIKVMDGALFTHF  144 (179)
Q Consensus        70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~---Sf~~l~~w~~~i~~~~~~~~~~~  144 (179)
                      .+.++.....+..+ +..+  |||+|+++|......+++.+|++|+|+|.++..   +|+...++.+.+.......    
T Consensus        80 GiTid~~~~~~~~~-~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~----  154 (439)
T 3j2k_7           80 GKTVEVGRAYFETE-KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG----  154 (439)
T ss_pred             CceEEEeEEEEecC-CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcC----
Confidence            34445555566666 6666  999999999998889999999999999998853   2332223333333222222    


Q ss_pred             ccceEEEEeeCCCcC
Q psy15036        145 ELQIVFMRGCLELLQ  159 (179)
Q Consensus       145 ~~~~iilvGnK~Dl~  159 (179)
                       .+++|+|+||+|+.
T Consensus       155 -v~~iIvviNK~Dl~  168 (439)
T 3j2k_7          155 -VKHLIVLINKMDDP  168 (439)
T ss_pred             -CCeEEEEeecCCCc
Confidence             14588999999984

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.20  E-value=7e-12  Score=95.59  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=70.3

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccC-CCcccCcceeeeeE--EEEE-ecCCCee--eeCCC----------chhchhh
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGIVFPA--ISVT-YSIGPRY--FRFPL----------VSRFLSL  100 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~~~~~--k~v~-~~~~~~i--wDt~G----------~e~~~~~  100 (179)
                      ...+||+ +|..|+|   ++..+.+.. .....++.+.....  ..+. .+ +..+  |||+|          ++.+..+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-EPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-SCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-CCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3478997 9999999   665555332 12222222222221  2222 22 3444  99999          5677778


Q ss_pred             hhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036        101 TTGLYRG---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE  163 (179)
Q Consensus       101 ~~~~~~~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~  163 (179)
                      ...|++.   +|++++|+|.++..+.. -..|+..+.+   ..      .|+++|+||+|+...+.
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~------~p~i~v~nK~Dl~~~~~  161 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TG------KPIHSLLTKCDKLTRQE  161 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GC------CCEEEEEECGGGSCHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cC------CCEEEEEeccccCChhh
Confidence            8888887   77899999998754422 2345555544   22      57889999999976433

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.13  E-value=4.6e-11  Score=104.91  Aligned_cols=82  Identities=6%  Similarity=-0.088  Sum_probs=55.9

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHHhCCccCccccceEEEE
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN---SFKDVEKWLLQIKVMDGALFTHFELQIVFMR  152 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~---Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilv  152 (179)
                      ..+... +..+  |||+|+++|......+++.+|++|+|+|.++..   +|.....+.+.+.......     .+++|||
T Consensus       238 ~~~~~~-~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-----i~~iIVV  311 (611)
T 3izq_1          238 SHFSTH-RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIA  311 (611)
T ss_dssp             CEEECS-SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----CCEEEEE
T ss_pred             EEEecC-CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----CCeEEEE
Confidence            345556 6666  999999999999899999999999999998742   2222223333333222222     1568999


Q ss_pred             eeCCCcCCCCCCC
Q psy15036        153 GCLELLQRCREVV  165 (179)
Q Consensus       153 GnK~Dl~~~r~Vs  165 (179)
                      +||+|+.+.++..
T Consensus       312 vNKiDl~~~~~~~  324 (611)
T 3izq_1          312 MNKMDNVDWSQQR  324 (611)
T ss_dssp             EECTTTTTTCHHH
T ss_pred             EecccccchhHHH
Confidence            9999997644433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.13  E-value=1.5e-10  Score=97.84  Aligned_cols=118  Identities=11%  Similarity=-0.050  Sum_probs=73.1

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh-----------h-
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL-----------T-  101 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~-----------~-  101 (179)
                      ..+||. +|.+|||   +++.+.+...  ....++...+.....+.++ |..+  |||+|+.++...           . 
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-TEEEEESSCSCC-----------CCSCCHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-CEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            458997 9999999   6666554321  1112222233444567788 8777  999998544322           2 


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQI  170 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~  170 (179)
                      ..+++.++++++|+|.++..+++.. .+...+.+   ..      .|+++|+||+|+.+++.++.++..
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~------~~~ilv~NK~Dl~~~~~~~~~~~~  316 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RG------RASVVVFNKWDLVVHREKRYDEFT  316 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TT------CEEEEEEECGGGSTTGGGCHHHHH
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cC------CCEEEEEECccCCCchhhHHHHHH
Confidence            3467889999999999988777653 22222222   12      588899999999877776666554

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.12  E-value=5.1e-10  Score=93.66  Aligned_cols=122  Identities=9%  Similarity=0.023  Sum_probs=78.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec----cCCCcccC--cceeeeeEEEEEe-------------cC-C------Cee--e
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY----LGTGTHGK--TVGIVFPAISVTY-------------SI-G------PRY--F   89 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~----~~~~~~~~--Ti~~~~~~k~v~~-------------~~-~------~~i--w   89 (179)
                      ..++|+ +|..++|   ++..+.+    .+..+..+  |+...+....+..             +. +      ..+  |
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            468997 9999999   5555542    23334444  7766654433321             10 1      233  9


Q ss_pred             eCCCchhchhhhhhhhcCCcEEEEEEeCC----ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC--
Q psy15036         90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVT----NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE--  163 (179)
Q Consensus        90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit----~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~--  163 (179)
                      ||+|+++|..........+|++|+|+|.+    .+++++.+..|    ... ..       +|+++|+||+|+.+.+.  
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~~-------~~iivv~NK~Dl~~~~~~~  154 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-GI-------DKIIIVQNKIDLVDEKQAE  154 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-TC-------CCEEEEEECTTSSCTTTTT
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-CC-------CeEEEEEEccCCCCHHHHH
Confidence            99999999776666777889999999998    46777766544    221 22       47889999999976443  


Q ss_pred             CCHHHHHHHHhh
Q psy15036        164 VVTPDQIMFGST  175 (179)
Q Consensus       164 Vs~~e~~~~a~~  175 (179)
                      ...+++++++++
T Consensus       155 ~~~~~i~~~l~~  166 (408)
T 1s0u_A          155 ENYEQIKEFVKG  166 (408)
T ss_dssp             THHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            345777777764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.11  E-value=4.5e-11  Score=101.80  Aligned_cols=109  Identities=12%  Similarity=-0.013  Sum_probs=67.5

Q ss_pred             eeEEE-EeCCCCc---eeEeeecc-C-CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhh--------hhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYL-G-TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLT--------TGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~-~-~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~--------~~~~~  106 (179)
                      .+||+ +|..+||   ++..+.+. + .....++...++..+.+.++ +..+  |||+|..++....        ..+++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~  302 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-GIPVQVLDTAGIRETSDQVEKIGVERSRQAAN  302 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-TEEEEECC--------------------CCCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-CEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence            57897 9999999   55555432 1 12223444445555667778 8877  9999987665332        33688


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      .+|++++|||.+++.++.. ..|++.+.    .       .|+++|+||+|+.+.+.+
T Consensus       303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~-------~piivV~NK~Dl~~~~~~  348 (462)
T 3geh_A          303 TADLVLLTIDAATGWTTGD-QEIYEQVK----H-------RPLILVMNKIDLVEKQLI  348 (462)
T ss_dssp             SCSEEEEEEETTTCSCHHH-HHHHHHHT----T-------SCEEEEEECTTSSCGGGS
T ss_pred             cCCEEEEEeccCCCCCHHH-HHHHHhcc----C-------CcEEEEEECCCCCcchhh
Confidence            9999999999999877765 44555442    2       378899999999765544

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.11  E-value=1.3e-11  Score=105.26  Aligned_cols=101  Identities=10%  Similarity=-0.041  Sum_probs=54.6

Q ss_pred             cCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccC
Q psy15036         68 GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFT  142 (179)
Q Consensus        68 ~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~  142 (179)
                      ..|++..+  ..+..+ +..+  |||+|+++|......+++.+|++|+|+|.++.   +||++..+|.+.+.......  
T Consensus       106 giTi~~~~--~~~~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~--  180 (467)
T 1r5b_A          106 GKTVEVGR--AYFETE-HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG--  180 (467)
T ss_dssp             -------C--CEEECS-SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--
T ss_pred             CceEEeee--EEEecC-CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC--
Confidence            34555433  245556 6666  99999999998888899999999999999986   56765555665554433232  


Q ss_pred             ccccceEEEEeeCCCcCCCC------CCCHHHHHHHHhhh
Q psy15036        143 HFELQIVFMRGCLELLQRCR------EVVTPDQIMFGSTQ  176 (179)
Q Consensus       143 ~~~~~~iilvGnK~Dl~~~r------~Vs~~e~~~~a~~~  176 (179)
                         .|.+|+|+||+|+.+..      +...++..+++++.
T Consensus       181 ---vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~  217 (467)
T 1r5b_A          181 ---INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV  217 (467)
T ss_dssp             ---CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHh
Confidence               13488999999995311      12234566666543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.10  E-value=7.1e-11  Score=102.08  Aligned_cols=72  Identities=8%  Similarity=-0.004  Sum_probs=57.8

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+... +..+  |||+|+++|......+++.+|++|+|+|.++..+......|.. +..   .+      .|+++|+||
T Consensus        75 ~~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~------iPiivviNK  143 (528)
T 3tr5_A           75 MQFPYK-DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RH------TPIMTFINK  143 (528)
T ss_dssp             EEEEET-TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TT------CCEEEEEEC
T ss_pred             EEEEeC-CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cC------CCEEEEEeC
Confidence            445556 6666  9999999999999999999999999999999888887776642 222   22      578899999


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      +|+..
T Consensus       144 ~Dl~~  148 (528)
T 3tr5_A          144 MDRDT  148 (528)
T ss_dssp             TTSCC
T ss_pred             CCCcc
Confidence            99965

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.10  E-value=5.4e-12  Score=109.17  Aligned_cols=108  Identities=13%  Similarity=0.027  Sum_probs=75.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..||+ +|..++|   ++..+. ..+...+.+++..++....+.++.+..+  |||+|++.|..++..+++.+|++|+|+
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVV   83 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVV   83 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEE
Confidence            46786 9999999   555555 2233334555555554445555315555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.++..+.+....|    ......+      .|+++|+||+|+.+
T Consensus        84 Da~dg~~~qt~e~l----~~~~~~~------vPiIVViNKiDl~~  118 (537)
T 3izy_P           84 AADDGVMKQTVESI----QHAKDAH------VPIVLAINKCDKAE  118 (537)
T ss_dssp             BSSSCCCHHHHHHH----HHHHTTT------CCEEECCBSGGGTT
T ss_pred             ECCCCccHHHHHHH----HHHHHcC------CcEEEEEecccccc
Confidence            99986555443333    3333333      57889999999964

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.08  E-value=3.8e-10  Score=95.19  Aligned_cols=88  Identities=8%  Similarity=0.048  Sum_probs=60.5

Q ss_pred             EEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036         80 VTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL  157 (179)
Q Consensus        80 v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D  157 (179)
                      +..+ +..+  |||+|+++|......+++.+|++|+|+|.++... .....|+..+... ..       +++++|+||+|
T Consensus        99 ~~~~-~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~~-------~~iIvviNK~D  168 (434)
T 1zun_B           99 FSTA-KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-GI-------KHIVVAINKMD  168 (434)
T ss_dssp             EECS-SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-TC-------CEEEEEEECTT
T ss_pred             eecC-CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-CC-------CeEEEEEEcCc
Confidence            3334 4455  9999999998888889999999999999998643 3334455544433 21       47889999999


Q ss_pred             cCCCCC----CCHHHHHHHHhhhC
Q psy15036        158 LQRCRE----VVTPDQIMFGSTQS  177 (179)
Q Consensus       158 l~~~r~----Vs~~e~~~~a~~~~  177 (179)
                      +.+...    ...++..+++++.+
T Consensus       169 l~~~~~~~~~~i~~~~~~~~~~~g  192 (434)
T 1zun_B          169 LNGFDERVFESIKADYLKFAEGIA  192 (434)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhC
Confidence            965211    12355666666543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.07  E-value=7.5e-11  Score=100.09  Aligned_cols=107  Identities=7%  Similarity=-0.015  Sum_probs=63.9

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEE--ecCCCee--eeCCC--------chhchhhhhhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVT--YSIGPRY--FRFPL--------VSRFLSLTTGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~--~~~~~~i--wDt~G--------~e~~~~~~~~~~~  106 (179)
                      ..+|+ +|.+|||   ++.++.+.......++.|.+.......  .. +..+  |||+|        ++++......+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-SSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-CceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            46787 9999999   555555332222334445443323333  33 4444  99999        8889999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++|++|+|+|..+.  +.....|+.+..+.  .+      .|++||+||+|+.+
T Consensus       102 ~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~------~pvilV~NK~D~~~  145 (456)
T 4dcu_A          102 EADVIIFMVNGREG--VTAADEEVAKILYR--TK------KPVVLAVNKLDNTE  145 (456)
T ss_dssp             HCSEEEEEEESSSC--SCHHHHHHHHHHTT--CC------SCEEEEEECC----
T ss_pred             hCCEEEEEEeCCCC--CChHHHHHHHHHHH--cC------CCEEEEEECccchh
Confidence            99999999997753  33344455544433  22      57889999999864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.05  E-value=4.6e-10  Score=98.30  Aligned_cols=75  Identities=11%  Similarity=-0.075  Sum_probs=59.3

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      |||+|++.|......+++.+|++|+|+|.++..+++....|.....    .+      .|+++|+||+|+.+.+  ..+.
T Consensus        76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~------ipiIvViNKiDl~~a~--~~~v  143 (599)
T 3cb4_D           76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MD------LEVVPVLNKIDLPAAD--PERV  143 (599)
T ss_dssp             EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TT------CEEEEEEECTTSTTCC--HHHH
T ss_pred             EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CC------CCEEEeeeccCccccc--HHHH
Confidence            9999999999999999999999999999999888888888876543    12      5788999999997643  2333


Q ss_pred             HHHHHhh
Q psy15036        169 QIMFGST  175 (179)
Q Consensus       169 ~~~~a~~  175 (179)
                      ..++++.
T Consensus       144 ~~ei~~~  150 (599)
T 3cb4_D          144 AEEIEDI  150 (599)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4445443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.04  E-value=4.8e-10  Score=88.87  Aligned_cols=108  Identities=12%  Similarity=0.064  Sum_probs=63.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeee--ccCCCcc-------cCcceeeeeEEEEEecCCC--ee--eeCCCch-------hc
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK--YLGTGTH-------GKTVGIVFPAISVTYSIGP--RY--FRFPLVS-------RF   97 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~--~~~~~~~-------~~Ti~~~~~~k~v~~~~~~--~i--wDt~G~e-------~~   97 (179)
                      +.+||+ +|..|+|   ++..+.  ..+...+       .+|++.++....+..+ +.  .+  |||+|..       .+
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-GVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-CeEEEEEEEECCCccccccchhhH
Confidence            579997 9999999   554433  3344444       6788887776666555 65  33  9999983       34


Q ss_pred             hhhh-------hhhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036         98 LSLT-------TGLYRG-------------TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL  157 (179)
Q Consensus        98 ~~~~-------~~~~~~-------------~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D  157 (179)
                      ..+.       ..|++.             +|+++++.+.++......-..+++.+..    .      .|+++|+||+|
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~------~pvi~V~nK~D  155 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K------VNIIPLIAKAD  155 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T------SCEEEEESSGG
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c------CCEEEEEeccC
Confidence            4443       444443             7899999877663222222345544443    3      58889999999


Q ss_pred             cCC
Q psy15036        158 LQR  160 (179)
Q Consensus       158 l~~  160 (179)
                      +..
T Consensus       156 ~~~  158 (274)
T 3t5d_A          156 TLT  158 (274)
T ss_dssp             GSC
T ss_pred             CCC
Confidence            854

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.04  E-value=6e-10  Score=92.16  Aligned_cols=108  Identities=8%  Similarity=-0.009  Sum_probs=73.9

Q ss_pred             eE-EE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCc---------hhchhhhhhh
Q psy15036         44 FG-TQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV---------SRFLSLTTGL  104 (179)
Q Consensus        44 ~K-iv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~---------e~~~~~~~~~  104 (179)
                      ++ |+ +|..|+|   +++.+.+...   ....+|.  +.....+.++ +..+  |||+|.         +.|..... .
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~--d~~~~~i~~~-g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~  254 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPIN-NRKIMLVDTVGFIRGIPPQIVDAFFVTLS-E  254 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------C--CSCEEEEEET-TEEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc--CCEEEEEEEC-CEEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence            45 65 9999999   5555553211   1223344  3445677888 8776  999997         33444333 5


Q ss_pred             hcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        105 YRGTMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ++.+|++++|+|++++.  +++.+..|.+.+......+      .|+++|+||+|+.+.
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~------~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG------KPILVTLNKIDKING  307 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS------CCEEEEEECGGGCCS
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC------CCEEEEEECCCCCCc
Confidence            78999999999999987  7788888887777665443      578999999999653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.03  E-value=1.7e-10  Score=95.65  Aligned_cols=112  Identities=8%  Similarity=0.027  Sum_probs=78.0

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      +|+ +|..++|   ++..+.     +...|++..+  ..+..+ +..+  |||+|+++|.......++.+|++|+|+|  
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~~~~~-~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd--   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YNNDKE-GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP--   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EEECSS-SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC--
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EEEecC-CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc--
Confidence            776 9999999   554444     3455665444  345556 6666  9999999998777778899999999999  


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee-CCCcCCCCCCCH--HHHHHHHhh
Q psy15036        119 NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC-LELLQRCREVVT--PDQIMFGST  175 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn-K~Dl~~~r~Vs~--~e~~~~a~~  175 (179)
                      +...+.....|+..+.... -       |.++++.| |+|+ +.+.+..  ++.++++++
T Consensus        93 ~~g~~~qt~e~~~~~~~~~-i-------~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~  143 (370)
T 2elf_A           93 PQGLDAHTGECIIALDLLG-F-------KHGIIALTRSDST-HMHAIDELKAKLKVITSG  143 (370)
T ss_dssp             TTCCCHHHHHHHHHHHHTT-C-------CEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT
T ss_pred             CCCCcHHHHHHHHHHHHcC-C-------CeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh
Confidence            5566777777777766542 1       34366667 9999 5433333  566666554

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.02  E-value=4.8e-10  Score=93.73  Aligned_cols=125  Identities=10%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc---------CCCc-------ccCcceeeee--EEEEEecCCCee--eeCCCchhc
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL---------GTGT-------HGKTVGIVFP--AISVTYSIGPRY--FRFPLVSRF   97 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~---------~~~~-------~~~Ti~~~~~--~k~v~~~~~~~i--wDt~G~e~~   97 (179)
                      ..+||+ +|..++|   ++..+...         +...       ...+.|+++.  ...+... +..+  |||+|+++|
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~~~iiDtpG~~~f   88 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA-KRHYSHVDCPGHADY   88 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS-SCEEEEEECCCSGGG
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC-CeEEEEEECCChHHH
Confidence            368897 9999999   54444421         1000       0012222222  2233334 5555  999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC---CCHHHHHHHHh
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE---VVTPDQIMFGS  174 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~---Vs~~e~~~~a~  174 (179)
                      ......+++.+|++|+|+|.++... .....|+..+...  .-      |.+++|+||+|+.+...   ...++.+++++
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~--~i------p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  159 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GV------PYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  159 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT--TC------CCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CC------CEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence            9888889999999999999988654 3445666665543  11      33788999999974221   12345666665


Q ss_pred             hh
Q psy15036        175 TQ  176 (179)
Q Consensus       175 ~~  176 (179)
                      +.
T Consensus       160 ~~  161 (405)
T 2c78_A          160 QY  161 (405)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.02  E-value=9.9e-10  Score=91.78  Aligned_cols=64  Identities=5%  Similarity=-0.021  Sum_probs=56.2

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|+++|......+++.+|++|+|+|.++..++.....|+..+.....        .|+++|+||+|+.+
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--------~~iivviNK~Dl~~  143 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--------KNLIIVQNKVDVVS  143 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--------CCEEEEEECGGGSC
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--------CCEEEEEECccccc
Confidence            99999999999999999999999999999998888888888887766543        36888999999965

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.02  E-value=7.1e-10  Score=92.54  Aligned_cols=123  Identities=11%  Similarity=0.047  Sum_probs=76.7

Q ss_pred             eeEEE-EeCCCCc---eeEeeecc--------CCC-----------cccCcceeeeeEEEEEecCCCee--eeCCCchhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYL--------GTG-----------THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF   97 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~--------~~~-----------~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~   97 (179)
                      .+||+ +|..++|   ++..+...        +..           ....|++..  ...+... +..+  |||+|+++|
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~-~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA--HVEYSTA-ARHYAHTDCPGHADY   79 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECE--EEEEECS-SCEEEEEECSSHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEee--eEEeccC-CeEEEEEECCChHHH
Confidence            57897 9999999   44444421        100           112233322  1233334 5555  999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC---CCHHHHHHHHh
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE---VVTPDQIMFGS  174 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~---Vs~~e~~~~a~  174 (179)
                      ......+++.+|++|+|+|.++....+....| ..++..   .     .|.+++++||+|+.+...   ...++++++++
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~-----vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---G-----VEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---T-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---C-----CCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence            88888899999999999999985444333333 333332   2     133778899999974221   22356677776


Q ss_pred             hhC
Q psy15036        175 TQS  177 (179)
Q Consensus       175 ~~~  177 (179)
                      +.+
T Consensus       151 ~~~  153 (397)
T 1d2e_A          151 EFG  153 (397)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.00  E-value=6.2e-11  Score=100.76  Aligned_cols=97  Identities=9%  Similarity=-0.011  Sum_probs=62.0

Q ss_pred             CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---hhHH---HHHHHHHHHHHHhCCc
Q psy15036         69 KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---NSFK---DVEKWLLQIKVMDGAL  140 (179)
Q Consensus        69 ~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---~Sf~---~l~~w~~~i~~~~~~~  140 (179)
                      .|+...+  ..+..+ +..+  |||+|+++|......+++.+|++|+|+|.++.   .||+   ....++..+... .- 
T Consensus        71 iTi~~~~--~~~~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~-~v-  145 (458)
T 1f60_A           71 ITIDIAL--WKFETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GV-  145 (458)
T ss_dssp             CCCSCSC--EEEECS-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TC-
T ss_pred             cEEEEEE--EEEecC-CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc-CC-
Confidence            3444333  344555 5555  99999999998888899999999999999875   3443   222222222221 11 


Q ss_pred             cCccccceEEEEeeCCCcCCCC----CCCHHHHHHHHhhh
Q psy15036        141 FTHFELQIVFMRGCLELLQRCR----EVVTPDQIMFGSTQ  176 (179)
Q Consensus       141 ~~~~~~~~iilvGnK~Dl~~~r----~Vs~~e~~~~a~~~  176 (179)
                            +++|+|+||+|+.+..    ....++..+++++.
T Consensus       146 ------~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~  179 (458)
T 1f60_A          146 ------RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV  179 (458)
T ss_dssp             ------CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ------CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHc
Confidence                  4688999999996311    12334566666554

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.98  E-value=1.7e-10  Score=100.95  Aligned_cols=104  Identities=13%  Similarity=0.039  Sum_probs=71.0

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCC-----cccCcceeeeeEEE--------------EEecCCCee--eeCCCchhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTG-----THGKTVGIVFPAIS--------------VTYSIGPRY--FRFPLVSRF   97 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~-----~~~~Ti~~~~~~k~--------------v~~~~~~~i--wDt~G~e~~   97 (179)
                      ..+|+ +|..++|   ++.++......     ...+++|..+....              +.+. ...+  |||+|++.|
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~-~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET-LPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT-CCEEEEECCCTTSCC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccc-cCCEEEEECCCcHHH
Confidence            46786 9999999   55555422111     23345654432110              0011 1124  999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..++..+++.+|++|+|||.++   ++|++.+..+    +.   .+      .|+++++||+|+..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~------vPiIVViNKiDl~~  136 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YR------TPFVVAANKIDRIH  136 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TT------CCEEEEEECGGGST
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cC------CeEEEEeccccccc
Confidence            9999999999999999999999   8888876643    21   22      57889999999965

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.98  E-value=1.3e-09  Score=82.19  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=70.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee-eeCCCch----------hchhhhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVS----------RFLSLTTGLY  105 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e----------~~~~~~~~~~  105 (179)
                      ...+|+ +|..|+|   +++.+.+. +...+.|+.|.......+.++ +... ||++|+.          .+......++
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~  103 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL  103 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-CCEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence            457886 9999999   66666543 234456777765544556666 5433 9999984          3344444455


Q ss_pred             ---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC--CCCCHHHHHHHHhh
Q psy15036        106 ---RGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC--REVVTPDQIMFGST  175 (179)
Q Consensus       106 ---~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~--r~Vs~~e~~~~a~~  175 (179)
                         +.++++++++|+++..++..  +..|+..      ..      .|+++|+||+|+...  ++...+++++++.+
T Consensus       104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~------~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~  168 (210)
T 1pui_A          104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SN------IAVLVLLTKADKLASGARKAQLNMVREAVLA  168 (210)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TT------CCEEEEEECGGGSCHHHHHHHHHHHHHHHGG
T ss_pred             HhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cC------CCeEEEEecccCCCchhHHHHHHHHHHHHHh
Confidence               57899999999998766643  3344321      12      467788999998542  33334566666654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.97  E-value=7.6e-10  Score=94.64  Aligned_cols=118  Identities=10%  Similarity=-0.033  Sum_probs=75.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC--------CCccc--CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG--------TGTHG--KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLY  105 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~--------~~~~~--~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~  105 (179)
                      ..++|+ +|..++|   ++..+....        ..+..  .|+...+  ..+.++ +..+  |||+|+++|......++
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~-~~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF--SAFKLE-NYRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC--CEEEET-TEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce--EEEEEC-CEEEEEEECCChHHHHHHHHHHH
Confidence            368897 9999999   555554321        12222  3444333  345556 6666  99999999988888899


Q ss_pred             cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC--CCCCHHHHHHHHhh
Q psy15036        106 RGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC--REVVTPDQIMFGST  175 (179)
Q Consensus       106 ~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~--r~Vs~~e~~~~a~~  175 (179)
                      +.+|++|+|+|.++   +++++.+.    .+...   .      .|+++|+||+|+.++  ++...++..+++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~------ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~  156 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEHML----ILDHF---N------IPIIVVITKSDNAGTEEIKRTEMIMKSILQS  156 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---T------CCBCEEEECTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhCCEEEEEEecCCCccHHHHHHHH----HHHHc---C------CCEEEEEECCCcccchhHHHHHHHHHHHHhh
Confidence            99999999999998   66766654    22221   2      345888999999652  12234455555543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.96  E-value=2.5e-09  Score=89.46  Aligned_cols=123  Identities=12%  Similarity=0.060  Sum_probs=78.3

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeec----cCCCcccC--cceeeeeEEEEEec------------C--C------Cee--
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKY----LGTGTHGK--TVGIVFPAISVTYS------------I--G------PRY--   88 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~----~~~~~~~~--Ti~~~~~~k~v~~~------------~--~------~~i--   88 (179)
                      ...++|+ +|..++|   ++..+.+    .+.++..+  |+...+....+...            +  +      ..+  
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            3468897 9999999   5555542    23344444  77655543333210            0  1      233  


Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCC----ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC-
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT----NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE-  163 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit----~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~-  163 (179)
                      |||+|+++|..........+|++|+|+|.+    .+++++.+..|.    .. ..       +|+++|+||+|+.+... 
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~-~~-------~~iivviNK~Dl~~~~~~  155 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----II-GQ-------KNIIIAQNKIELVDKEKA  155 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HH-TC-------CCEEEEEECGGGSCHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----Hc-CC-------CcEEEEEECccCCCHHHH
Confidence            999999999776666777889999999998    456777665442    22 22       47888899999975332 


Q ss_pred             -CCHHHHHHHHhh
Q psy15036        164 -VVTPDQIMFGST  175 (179)
Q Consensus       164 -Vs~~e~~~~a~~  175 (179)
                       ...++.++++++
T Consensus       156 ~~~~~~i~~~l~~  168 (410)
T 1kk1_A          156 LENYRQIKEFIEG  168 (410)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence             234556666543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.95  E-value=3.1e-09  Score=94.51  Aligned_cols=110  Identities=10%  Similarity=-0.006  Sum_probs=75.1

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeeec---cC------CC------------cccCcceeeeeEEEEEecCCCee--ee
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLKY---LG------TG------------THGKTVGIVFPAISVTYSIGPRY--FR   90 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~---~~------~~------------~~~~Ti~~~~~~k~v~~~~~~~i--wD   90 (179)
                      ...+...+|+ +|..++|   ++..+..   ..      ..            ....|+....  ..+... +..+  ||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~-~~~i~liD   83 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWK-DHRINIID   83 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEET-TEEEEEEC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEEC-CeEEEEEE
Confidence            3445678897 9999999   3333321   00      00            2344554332  344555 6566  99


Q ss_pred             CCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         91 FPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        91 t~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |+|+..|......+++.+|++|+|+|.++..++.....|.. +.+.   +      .|+++|+||+|+..
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~------~p~ivviNKiD~~~  143 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---K------VPRIAFANKMDKTG  143 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---T------CCEEEEEECTTSTT
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---C------CCEEEEEECCCccc
Confidence            99999999999999999999999999999988888877764 3322   2      57788899999975

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.95  E-value=2.5e-10  Score=98.06  Aligned_cols=104  Identities=13%  Similarity=0.028  Sum_probs=69.4

Q ss_pred             eeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+|+ +|..++|   ++..+.. .+.....+++..+.....+..+ +..+  |||+|++.|..++..+++.+|++|+|+
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~-~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV   82 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE-NGMITFLDTPGHAAFTSMRARGAQATDIVVLVV   82 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT-SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC-CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence            45676 9999999   5555442 2222222222222222234455 6666  999999999999999999999999999


Q ss_pred             eCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.++   +++++.+.    .+..   .+      .|+++++||+|+.+
T Consensus        83 da~~g~~~qT~e~l~----~~~~---~~------vPiIVviNKiDl~~  117 (501)
T 1zo1_I           83 AADDGVMPQTIEAIQ----HAKA---AQ------VPVVVAVNKIDKPE  117 (501)
T ss_dssp             ETTTBSCTTTHHHHH----HHHH---TT------CCEEEEEECSSSST
T ss_pred             ecccCccHHHHHHHH----HHHh---cC------ceEEEEEEeccccc
Confidence            9988   55555432    2221   22      57889999999964

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.94  E-value=1.8e-09  Score=94.46  Aligned_cols=63  Identities=13%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      |||+|++.|......+++.+|++|+|+|.++..+++....|.....    .+      .|+++|+||+|+.+.
T Consensus        78 iDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~------ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           78 IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QD------LVIIPVINKIDLPSA  140 (600)
T ss_dssp             ECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TT------CEEEEEEECTTSTTC
T ss_pred             EECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CC------CCEEEEEeccCcccc
Confidence            9999999999888889999999999999999988888888876543    22      578899999999763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.94  E-value=1.2e-09  Score=88.00  Aligned_cols=76  Identities=8%  Similarity=-0.155  Sum_probs=61.0

Q ss_pred             CCchhchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC-HHHH
Q psy15036         92 PLVSRFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV-TPDQ  169 (179)
Q Consensus        92 ~G~e~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs-~~e~  169 (179)
                      ..++++..+.+.+++++|++++|||+++++ ||+.+..|+..+..   .+      .|++||+||+||.++++++ .++.
T Consensus        64 ~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~------~~~ilV~NK~DL~~~~~v~~~~~~  134 (302)
T 2yv5_A           64 EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FK------VEPVIVFNKIDLLNEEEKKELERW  134 (302)
T ss_dssp             EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TT------CEEEEEECCGGGCCHHHHHHHHHH
T ss_pred             eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CC------CCEEEEEEcccCCCccccHHHHHH
Confidence            448899999999999999999999999997 99999999997765   22      5778999999997655444 4566


Q ss_pred             HHHHhhh
Q psy15036        170 IMFGSTQ  176 (179)
Q Consensus       170 ~~~a~~~  176 (179)
                      .+++++.
T Consensus       135 ~~~~~~~  141 (302)
T 2yv5_A          135 ISIYRDA  141 (302)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            6666543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.92  E-value=1.9e-09  Score=97.75  Aligned_cols=71  Identities=15%  Similarity=-0.047  Sum_probs=58.5

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC-CCCCCCHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ-RCREVVTP  167 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~-~~r~Vs~~  167 (179)
                      |||+|+++|......+++.+|++|+|||.++..+++....|.....    .+      .|+++|+||+|+. .++.++.+
T Consensus       103 iDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~------~p~ilviNK~D~~~~e~~~~~~  172 (842)
T 1n0u_A          103 IDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ER------IKPVVVINKVDRALLELQVSKE  172 (842)
T ss_dssp             ECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TT------CEEEEEEECHHHHHHTSCCCHH
T ss_pred             EECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cC------CCeEEEEECCCcchhhhccCHH
Confidence            9999999999999999999999999999999999988877754332    12      5778899999986 35567766


Q ss_pred             HH
Q psy15036        168 DQ  169 (179)
Q Consensus       168 e~  169 (179)
                      ++
T Consensus       173 e~  174 (842)
T 1n0u_A          173 DL  174 (842)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.87  E-value=2.2e-09  Score=86.46  Aligned_cols=119  Identities=11%  Similarity=-0.042  Sum_probs=70.6

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCch-h--------chhhhhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS-R--------FLSLTTG  103 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e-~--------~~~~~~~  103 (179)
                      ..+|. +|.+|+|   ++..+.+...    .....|..  .....+..+ +..+  |||+|++ +        +......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~--~~~gi~~~~-~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH--RIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSS--CEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCccee--eEEEEEEEC-CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            34575 9999999   5555443211    11112221  111223334 5555  9999997 2        3344566


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST  175 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~  175 (179)
                      +++.+|++++|+|.++   +.....|+-+...  ...      .|+++|+||+|+...+....+...++++.
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~------~P~ilvlNK~D~~~~~~~~~~~l~~l~~~  145 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGK------APVILAVNKVDNVQEKADLLPHLQFLASQ  145 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSS------SCEEEEEESTTTCCCHHHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcC------CCEEEEEECcccCccHHHHHHHHHHHHHh
Confidence            7889999999999976   4444455544332  222      57888899999976333334555556554

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.87  E-value=1.7e-09  Score=100.16  Aligned_cols=125  Identities=11%  Similarity=0.031  Sum_probs=75.9

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc----C----C-------CcccCcceeeeeEE--EEEecCCCee--eeCCCchhch
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL----G----T-------GTHGKTVGIVFPAI--SVTYSIGPRY--FRFPLVSRFL   98 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~----~----~-------~~~~~Ti~~~~~~k--~v~~~~~~~i--wDt~G~e~~~   98 (179)
                      ..+||+ +|..++|   ++..+...    .    .       .....+.|+++...  .+... +..+  |||+|+++|.
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-TRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-SCEEEEEECCCHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-CEEEEEEECCChHHHH
Confidence            468997 9999999   44444321    0    0       01122344433222  23333 4555  9999999999


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC---CCHHHHHHHHhh
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE---VVTPDQIMFGST  175 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~---Vs~~e~~~~a~~  175 (179)
                      .....+++.+|++|+|+|.++.... ....|+..+.... -       |.+|+|+||+|+.+.++   ...+|+++++++
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~lg-I-------P~IIVVINKiDLv~d~e~le~i~eEi~elLk~  444 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQVG-V-------PYIIVFLNKCDMVDDEELLELVEMEVRELLSQ  444 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHHT-C-------SCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHcC-C-------CeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence            8888899999999999999986433 3344555555431 1       34788999999975222   223566777765


Q ss_pred             h
Q psy15036        176 Q  176 (179)
Q Consensus       176 ~  176 (179)
                      .
T Consensus       445 ~  445 (1289)
T 3avx_A          445 Y  445 (1289)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.81  E-value=4.7e-09  Score=86.30  Aligned_cols=74  Identities=8%  Similarity=-0.050  Sum_probs=55.8

Q ss_pred             eeCCCchhc-------------hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         89 FRFPLVSRF-------------LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        89 wDt~G~e~~-------------~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      |||+|..++             ..+...|+++++++|+|+|.++.+...  ..|+..++......      .|+++|+||
T Consensus       141 vDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~------~~~i~V~nK  212 (360)
T 3t34_A          141 IDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSG------DRTFGVLTK  212 (360)
T ss_dssp             EECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTC------TTEEEEEEC
T ss_pred             EECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccC------CCEEEEEeC
Confidence            999999887             677889999999999999887655433  45666666655544      578899999


Q ss_pred             CCcCCCCCCCHHHHH
Q psy15036        156 ELLQRCREVVTPDQI  170 (179)
Q Consensus       156 ~Dl~~~r~Vs~~e~~  170 (179)
                      +|+.+++....+.+.
T Consensus       213 ~Dl~~~~~~~~~~~~  227 (360)
T 3t34_A          213 IDLMDKGTDAVEILE  227 (360)
T ss_dssp             GGGCCTTCCSHHHHT
T ss_pred             CccCCCcccHHHHHc
Confidence            999776666554443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.80  E-value=8.7e-09  Score=81.89  Aligned_cols=68  Identities=7%  Similarity=-0.078  Sum_probs=48.4

Q ss_pred             eeCCCch-------------hchhhhhhhhcCCcEEE-EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         89 FRFPLVS-------------RFLSLTTGLYRGTMGFL-LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        89 wDt~G~e-------------~~~~~~~~~~~~~~~vi-lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      |||+|..             .+..+...|++.++++| +|+|.++..+......|+..+.   ...      .|+++|+|
T Consensus       130 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~------~~~i~V~N  200 (299)
T 2aka_B          130 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQG------QRTIGVIT  200 (299)
T ss_dssp             EECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTC------SSEEEEEE
T ss_pred             EeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCC------CeEEEEEE
Confidence            9999963             45677888999999887 6899988655544434554443   222      57889999


Q ss_pred             CCCcCCCCCCC
Q psy15036        155 LELLQRCREVV  165 (179)
Q Consensus       155 K~Dl~~~r~Vs  165 (179)
                      |+|+.+.+...
T Consensus       201 K~Dl~~~~~~~  211 (299)
T 2aka_B          201 KLDLMDEGTDA  211 (299)
T ss_dssp             CGGGSCTTCCC
T ss_pred             ccccCCCCchH
Confidence            99997655533

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.80  E-value=2.8e-08  Score=88.59  Aligned_cols=62  Identities=8%  Similarity=-0.119  Sum_probs=50.3

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|+++|......+++.+|++|+|+|.++..+......|.. +..   .+      .|+++|+||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~------ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YK------VPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cC------CCEEEEEeCCCccc
Confidence            9999999999999999999999999999998877766665632 222   22      57788899999865

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.78  E-value=1e-08  Score=91.18  Aligned_cols=107  Identities=11%  Similarity=-0.009  Sum_probs=73.7

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeec---cCC-----------C-------cccCcceeeeeEEEEEecCCCee--eeCCC
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKY---LGT-----------G-------THGKTVGIVFPAISVTYSIGPRY--FRFPL   93 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~---~~~-----------~-------~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G   93 (179)
                      +...+|+ +|..++|   ++..+..   ...           .       ....|+...  ...+..+ +..+  |||+|
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~--~~~~~~~-~~~i~liDTPG   84 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA--ATTAAWE-GHRVNIIDTPG   84 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS--EEEEEET-TEEEEEECCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee--eEEEEEC-CeeEEEEECcC
Confidence            3467886 9999999   4444331   110           0       112233322  2345556 6666  99999


Q ss_pred             chhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        94 ~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +..|......+++.+|++|+|+|.++..++.....|.. +.+.   +      .|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~------~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---G------VPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---T------CCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---C------CCEEEEEECCCccc
Confidence            99999989999999999999999999888888777754 3332   2      57888999999975

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.78  E-value=2.9e-08  Score=85.77  Aligned_cols=71  Identities=8%  Similarity=-0.107  Sum_probs=51.4

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCL  155 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK  155 (179)
                      .+... +..+  |||+|++.|......+++.+|++|+|+|.++...-     |...+.+... .+      .|+++++||
T Consensus        76 ~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~------ipiivviNK  143 (529)
T 2h5e_A           76 QFPYH-DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRD------TPILTFMNK  143 (529)
T ss_dssp             EEEET-TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTT------CCEEEEEEC
T ss_pred             EEEEC-CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcC------CCEEEEEcC
Confidence            34445 5555  99999999998888899999999999999886432     2222222222 22      578899999


Q ss_pred             CCcCCC
Q psy15036        156 ELLQRC  161 (179)
Q Consensus       156 ~Dl~~~  161 (179)
                      +|+...
T Consensus       144 ~Dl~~~  149 (529)
T 2h5e_A          144 LDRDIR  149 (529)
T ss_dssp             TTSCCS
T ss_pred             cCCccc
Confidence            999763

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.76  E-value=5e-09  Score=88.11  Aligned_cols=126  Identities=10%  Similarity=0.086  Sum_probs=70.1

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCC--Cc-------ccCcceeeeeEEEEEecCCCe--e--eeCCCchhch-----
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGT--GT-------HGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFL-----   98 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~--~~-------~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~-----   98 (179)
                      +..|+|+ +|++|+|   +++.+.+...  ..       ..+|++.......++.. +..  +  ||++|...+.     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~-~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-GVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecC-Ccccceeeeechhhhhhccchhh
Confidence            3567886 9999999   5555543211  11       12344433322222223 322  2  9999987642     


Q ss_pred             --h------------------hhhhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         99 --S------------------LTTGLYRGTMGFLLIFDVTNE-NSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        99 --~------------------~~~~~~~~~~~vilvyDit~~-~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                        .                  +.+.+++++++.+++|++..- .+|+.+. .|+..+.   . .      .++|+|+||+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~------v~iIlVinK~  177 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-K------VNIIPLIAKA  177 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-T------SEEEEEEEST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-c------CcEEEEEEcc
Confidence              1                  224466777877777777664 5777765 6776664   2 2      5889999999


Q ss_pred             CcCCCCCCCH--HHHHHHHhhhC
Q psy15036        157 LLQRCREVVT--PDQIMFGSTQS  177 (179)
Q Consensus       157 Dl~~~r~Vs~--~e~~~~a~~~~  177 (179)
                      |+...+++..  +++.+++..++
T Consensus       178 Dll~~~ev~~~k~~i~~~~~~~~  200 (418)
T 2qag_C          178 DTLTPEECQQFKKQIMKEIQEHK  200 (418)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCccHHHHHHHHHHHHHHHHHcC
Confidence            9977677765  67777777654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.75  E-value=1.4e-09  Score=87.63  Aligned_cols=127  Identities=13%  Similarity=0.162  Sum_probs=63.8

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeec--cCCCcc--------cCcceeeeeEEEEEecCCCee----eeCCCc-------h
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKY--LGTGTH--------GKTVGIVFPAISVTYSIGPRY----FRFPLV-------S   95 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~--~~~~~~--------~~Ti~~~~~~k~v~~~~~~~i----wDt~G~-------e   95 (179)
                      +..+||+ +|++|+|   +++.+.+  .++..+        .+|++.......++.. +..+    ||++|+       +
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~-~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER-GVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC-CcccCcchhhhhhhhhhcCcHH
Confidence            3568887 9999999   5544332  233222        2343332222222223 3322    999998       7


Q ss_pred             hchhhhh-------hhhcCCcEEE-----------EEEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         96 RFLSLTT-------GLYRGTMGFL-----------LIFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        96 ~~~~~~~-------~~~~~~~~vi-----------lvyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      ++..+..       .|+++.++..           ++|+... ..+|+.+.  .+.+++....       .++++|+||.
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~--~~~l~~l~~~-------~~iilV~~K~  165 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD--VAFMKAIHNK-------VNIVPVIAKA  165 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH--HHHHHHHTTT-------SCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH--HHHHHHHHhc-------CCEEEEEEeC
Confidence            7777666       6776654322           4444332 23566554  2334444332       5788999999


Q ss_pred             CcCCCCCC--CHHHHHHHHhhhC
Q psy15036        157 LLQRCREV--VTPDQIMFGSTQS  177 (179)
Q Consensus       157 Dl~~~r~V--s~~e~~~~a~~~~  177 (179)
                      |+..++++  ..+++.++++++.
T Consensus       166 Dl~~~~e~~~~~~~~~~~~~~~~  188 (301)
T 2qnr_A          166 DTLTLKERERLKKRILDEIEEHN  188 (301)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcC
Confidence            99765543  4578888888764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.73  E-value=9.9e-10  Score=96.16  Aligned_cols=74  Identities=11%  Similarity=-0.004  Sum_probs=37.7

Q ss_pred             eeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHHhCCcc
Q psy15036         74 VFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE----------NSFKDVEKWLLQIKVMDGALF  141 (179)
Q Consensus        74 ~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~----------~Sf~~l~~w~~~i~~~~~~~~  141 (179)
                      +.....+..+ +..+  |||+|+++|......+++.+|++|+|+|.++.          ++.+.+    ..+.. ...  
T Consensus       244 d~~~~~~~~~-~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~-lgi--  315 (592)
T 3mca_A          244 DVASTTFESD-KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA-LGI--  315 (592)
T ss_dssp             ----------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH-SSC--
T ss_pred             EeeEEEEEeC-CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH-cCC--
Confidence            3333445555 5555  99999999998888899999999999999853          333322    11222 111  


Q ss_pred             CccccceEEEEeeCCCcCC
Q psy15036        142 THFELQIVFMRGCLELLQR  160 (179)
Q Consensus       142 ~~~~~~~iilvGnK~Dl~~  160 (179)
                           |++|+|+||+|+.+
T Consensus       316 -----p~iIvviNKiDl~~  329 (592)
T 3mca_A          316 -----SEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEEEEECGGGGT
T ss_pred             -----CeEEEEEecccccc
Confidence                 45888999999964

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.70  E-value=4.4e-08  Score=86.79  Aligned_cols=75  Identities=9%  Similarity=-0.120  Sum_probs=55.6

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      |||+|+++|......+++.+|++++|+|.++.-+... ..|+..+...   .      .|+++|+||+|+.   ....+.
T Consensus        79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~------ip~ilv~NKiD~~---~~~~~~  145 (665)
T 2dy1_A           79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---G------LPRMVVVTKLDKG---GDYYAL  145 (665)
T ss_dssp             EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---T------CCEEEEEECGGGC---CCHHHH
T ss_pred             EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---c------CCEEEEecCCchh---hhHHHH
Confidence            9999999999989999999999999999887654433 3444444432   2      5778889999987   334555


Q ss_pred             HHHHHhhh
Q psy15036        169 QIMFGSTQ  176 (179)
Q Consensus       169 ~~~~a~~~  176 (179)
                      ..++++..
T Consensus       146 ~~~l~~~l  153 (665)
T 2dy1_A          146 LEDLRSTL  153 (665)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.67  E-value=9.5e-09  Score=89.22  Aligned_cols=64  Identities=8%  Similarity=-0.011  Sum_probs=51.4

Q ss_pred             eeCCCchh-----------chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036         89 FRFPLVSR-----------FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL  157 (179)
Q Consensus        89 wDt~G~e~-----------~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D  157 (179)
                      |||+|...           |......+++.+|++++|+|.++....+....|++.+.+.   .      .|+++|+||+|
T Consensus       159 IDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~------~pvilVlNK~D  229 (550)
T 2qpt_A          159 IDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E------DKIRVVLNKAD  229 (550)
T ss_dssp             EECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G------GGEEEEEECGG
T ss_pred             EECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C------CCEEEEEECCC
Confidence            99999875           5567778899999999999999877777777787766532   2      47889999999


Q ss_pred             cCCC
Q psy15036        158 LQRC  161 (179)
Q Consensus       158 l~~~  161 (179)
                      +..+
T Consensus       230 l~~~  233 (550)
T 2qpt_A          230 MVET  233 (550)
T ss_dssp             GSCH
T ss_pred             ccCH
Confidence            8653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.67  E-value=3.7e-08  Score=87.71  Aligned_cols=68  Identities=13%  Similarity=-0.013  Sum_probs=52.5

Q ss_pred             eeCCCchh---chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC
Q psy15036         89 FRFPLVSR---FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV  165 (179)
Q Consensus        89 wDt~G~e~---~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs  165 (179)
                      |||+|...   .......|++++|++|+|+|.++..++..+..|.+.+...   .      .|+++|+||+|+...+.++
T Consensus       179 iDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~---~------~~iiiVlNK~Dl~~~~~~~  249 (695)
T 2j69_A          179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR---G------LTVFFLVNAWDQVRESLID  249 (695)
T ss_dssp             EECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS---C------CCEEEEEECGGGGGGGCSS
T ss_pred             EECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh---C------CCEEEEEECcccccccccC
Confidence            99999765   3456678999999999999999998998887776554321   2      4688999999997654333

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.57  E-value=1e-07  Score=76.37  Aligned_cols=66  Identities=8%  Similarity=0.006  Sum_probs=43.3

Q ss_pred             eeCCCchh-------------chhhhhhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         89 FRFPLVSR-------------FLSLTTGLYRGTMGFLLIFDVTNENSF-KDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        89 wDt~G~e~-------------~~~~~~~~~~~~~~vilvyDit~~~Sf-~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      |||+|..+             +......+++++|++++|+|.++.... .....+...+   ....      .|+++|+|
T Consensus       136 vDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~------~~~i~v~N  206 (315)
T 1jwy_B          136 VDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEG------KRTIGVIT  206 (315)
T ss_dssp             EECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSC------SSEEEEEE
T ss_pred             EECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCC------CcEEEEEc
Confidence            99999753             556778899999999999998554311 1111222222   2222      57889999


Q ss_pred             CCCcCCCCC
Q psy15036        155 LELLQRCRE  163 (179)
Q Consensus       155 K~Dl~~~r~  163 (179)
                      |+|+.+.+.
T Consensus       207 K~Dl~~~~~  215 (315)
T 1jwy_B          207 KLDLMDKGT  215 (315)
T ss_dssp             CTTSSCSSC
T ss_pred             CcccCCcch
Confidence            999976544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.41  E-value=3.7e-10  Score=86.31  Aligned_cols=128  Identities=11%  Similarity=-0.057  Sum_probs=68.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeee------------EEEEEecCCCee----eeCCCchhchhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFP------------AISVTYSIGPRY----FRFPLVSRFLSL  100 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~------------~k~v~~~~~~~i----wDt~G~e~~~~~  100 (179)
                      ..+||+ +|+.|||   ++.++. ..+...+.++++.++.            .+.+.++++..+    ||+  ++.+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l  114 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALEDL  114 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHHH
Confidence            357887 9999999   555554 4455556677777664            345555412222    776  5666554


Q ss_pred             h----hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH-hCCccCc----cccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036        101 T----TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM-DGALFTH----FELQIVFMRGCLELLQRCREVVTPDQIM  171 (179)
Q Consensus       101 ~----~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~-~~~~~~~----~~~~~iilvGnK~Dl~~~r~Vs~~e~~~  171 (179)
                      .    ..++.+++|+     +..+.||+....|...+... .......    .-..|.++|+||+|+.+++.+..+++.+
T Consensus       115 ~~~~~d~~~id~~g~-----i~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~  189 (226)
T 2hf9_A          115 NLDEIDLLFIENVGN-----LICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMEN  189 (226)
T ss_dssp             CGGGCSEEEEECCSC-----SSGGGGCCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred             hcCCCCEEEEeCCCC-----ccCcchhhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHH
Confidence            4    2233333221     12344444333443222211 1111000    0002347889999997766678888888


Q ss_pred             HHhhh
Q psy15036        172 FGSTQ  176 (179)
Q Consensus       172 ~a~~~  176 (179)
                      ++++.
T Consensus       190 ~~~~~  194 (226)
T 2hf9_A          190 DAKRI  194 (226)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.34  E-value=1.3e-06  Score=72.10  Aligned_cols=87  Identities=13%  Similarity=0.070  Sum_probs=52.9

Q ss_pred             eEEE-EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCC-----------------Cee--eeCCCchhc
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIG-----------------PRY--FRFPLVSRF   97 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~-----------------~~i--wDt~G~e~~   97 (179)
                      +||. +|.++||   +++.+.+..  ...+ .+|++....  .+.++ +                 ..+  |||+|+.++
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~-~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMP-DPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECC-CHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecC-CcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            6886 9999999   555555321  1122 124443332  23444 4                 234  999999876


Q ss_pred             h----hhhh---hhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy15036         98 L----SLTT---GLYRGTMGFLLIFDVTN----------ENSFKDVEKWLLQI  133 (179)
Q Consensus        98 ~----~~~~---~~~~~~~~vilvyDit~----------~~Sf~~l~~w~~~i  133 (179)
                      .    .+..   .+++++|++++|+|.++          .++++.+..|..++
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL  132 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL  132 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence            4    2332   35799999999999987          25666655444443

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.33  E-value=3.9e-07  Score=69.86  Aligned_cols=78  Identities=8%  Similarity=0.037  Sum_probs=45.4

Q ss_pred             eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC-CcCCCCCCCHHH
Q psy15036         90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE-LLQRCREVVTPD  168 (179)
Q Consensus        90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~-Dl~~~r~Vs~~e  168 (179)
                      +.+||++++.+++.||.++|++|+|.|.+|++-++ .+.-+.++.....+.. .....|+++.+||. |+..  .++..|
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~-~L~gapLLVlANKqqDlp~--Ams~~E  183 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVK--RMPCFY  183 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTS-SCSCSCEEEEEEESSTTSC--BCCHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchh-hhCCCeEEEEeCCCcCccC--CCCHHH
Confidence            56799999999999999999999999999986654 4443333333221110 00115777889985 7743  777776


Q ss_pred             HHH
Q psy15036        169 QIM  171 (179)
Q Consensus       169 ~~~  171 (179)
                      ..+
T Consensus       184 I~e  186 (227)
T 3l82_B          184 LAH  186 (227)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.31  E-value=7.1e-07  Score=74.51  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=26.7

Q ss_pred             eeCCCchh----chhhhh---hhhcCCcEEEEEEeCCCh-----------hhHHHHHHHHHHH
Q psy15036         89 FRFPLVSR----FLSLTT---GLYRGTMGFLLIFDVTNE-----------NSFKDVEKWLLQI  133 (179)
Q Consensus        89 wDt~G~e~----~~~~~~---~~~~~~~~vilvyDit~~-----------~Sf~~l~~w~~~i  133 (179)
                      |||+|+.+    +..+..   .+++++|++++|+|.++.           ++++.+..|..++
T Consensus        76 vDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL  138 (397)
T 1wxq_A           76 VDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREI  138 (397)
T ss_dssp             EECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHH
T ss_pred             EECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHH
Confidence            99999864    233333   347899999999999986           6666655444443

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.30  E-value=8e-07  Score=72.80  Aligned_cols=67  Identities=12%  Similarity=-0.005  Sum_probs=43.1

Q ss_pred             eeCCCch-------------hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         89 FRFPLVS-------------RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        89 wDt~G~e-------------~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      |||+|..             .+..+...|++.++.+|+++...+. .+.+ ..|...++...+..      .|+++|+||
T Consensus       135 vDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~-~~~~~i~~~~~~~~------~~~i~V~NK  206 (353)
T 2x2e_A          135 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLAN-SDALKVAKEVDPQG------QRTIGVITK  206 (353)
T ss_dssp             EECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-CGGG-CHHHHHHHHHCTTC------TTEEEEEEC
T ss_pred             EECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-ccch-hHHHHHHHHhCcCC------CceEEEecc
Confidence            9999952             5667788899888888877644332 2222 12333344444333      578899999


Q ss_pred             CCcCCCCC
Q psy15036        156 ELLQRCRE  163 (179)
Q Consensus       156 ~Dl~~~r~  163 (179)
                      +|+.+++.
T Consensus       207 ~Dl~~~~~  214 (353)
T 2x2e_A          207 LDLMDEGT  214 (353)
T ss_dssp             GGGSCTTC
T ss_pred             ccccCcch
Confidence            99976443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.21  E-value=1.5e-06  Score=71.80  Aligned_cols=69  Identities=19%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             CCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036         91 FPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQI  170 (179)
Q Consensus        91 t~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~  170 (179)
                      ...+++|+.+.+.+++.++++++|+|+++++     ..|..++.+....       .|+++|+||+||.. +.+..++.+
T Consensus        53 ~~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~-------~p~ilV~NK~DL~~-~~~~~~~~~  119 (368)
T 3h2y_A           53 SLTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGN-------NKVLLVGNKADLIP-KSVKHDKVK  119 (368)
T ss_dssp             ---CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSS-------SCEEEEEECGGGSC-TTSCHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCC-------CcEEEEEEChhcCC-cccCHHHHH
Confidence            3457899999999999999999999999863     5688888777654       47889999999965 345556665


Q ss_pred             HH
Q psy15036        171 MF  172 (179)
Q Consensus       171 ~~  172 (179)
                      ++
T Consensus       120 ~~  121 (368)
T 3h2y_A          120 HW  121 (368)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.20  E-value=2.4e-06  Score=71.77  Aligned_cols=106  Identities=17%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             EEeCCCCc---eeEeeeccCC--Cccc-CcceeeeeEEEEEecCC-Cee--eeCCCchh----chhhhhhhh---cCCcE
Q psy15036         47 QLGRRGIP---LLKHLKYLGT--GTHG-KTVGIVFPAISVTYSIG-PRY--FRFPLVSR----FLSLTTGLY---RGTMG  110 (179)
Q Consensus        47 vlG~~gvG---~~~~~~~~~~--~~~~-~Ti~~~~~~k~v~~~~~-~~i--wDt~G~e~----~~~~~~~~~---~~~~~  110 (179)
                      |+|.+|+|   +++.+.....  ..+. .|+...  ...+.++ + ..+  ||++|...    +..+...|+   ..++.
T Consensus       162 LVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~  238 (416)
T 1udx_A          162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV  238 (416)
T ss_dssp             EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence            39999999   5555443211  1111 122221  1234455 4 444  99999743    333434444   46999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++.++|++ ++++.+++.|.+++..+...-    ...|.+||.||+|+..
T Consensus       239 lL~vvDls-~~~~~~ls~g~~el~~la~aL----~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          239 LLYVLDAA-DEPLKTLETLRKEVGAYDPAL----LRRPSLVALNKVDLLE  283 (416)
T ss_dssp             EEEEEETT-SCHHHHHHHHHHHHHHHCHHH----HHSCEEEEEECCTTSC
T ss_pred             hhEEeCCc-cCCHHHHHHHHHHHHHHhHHh----hcCCEEEEEECCChhh
Confidence            99999999 889999999999887764210    0036677789999976

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.09  E-value=4e-06  Score=67.16  Aligned_cols=73  Identities=5%  Similarity=-0.002  Sum_probs=48.7

Q ss_pred             eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---H-HHh-CCccCccccceEEEEeeC-CCcCCCCC
Q psy15036         90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI---K-VMD-GALFTHFELQIVFMRGCL-ELLQRCRE  163 (179)
Q Consensus        90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i---~-~~~-~~~~~~~~~~~iilvGnK-~Dl~~~r~  163 (179)
                      |.+||++.+.+++.||.++|++|+|.|.+|++-++ .+.-+.++   . +.. ..+      .|+++.+|| -|+.+  .
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~------apLLVfANKkQDlp~--A  263 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG------RPLLVLSCISQGDVK--R  263 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTT------CCEEEEEEESSTTSC--B
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCC------CeEEEEeCCcccccC--C
Confidence            46899999999999999999999999999997654 33322222   1 211 122      577777896 58854  6


Q ss_pred             CCHHHHHH
Q psy15036        164 VVTPDQIM  171 (179)
Q Consensus       164 Vs~~e~~~  171 (179)
                      ++.+|..+
T Consensus       264 ms~~EI~e  271 (312)
T 3l2o_B          264 MPCFYLAH  271 (312)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            77766554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.90  E-value=6.9e-06  Score=67.80  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                      +....+++|+++.+.+++.++++++|+|++++++     .|.+++.+....       .|+++|+||+||.. +.+..++
T Consensus        53 ~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~-------~piilV~NK~DLl~-~~~~~~~  119 (369)
T 3ec1_A           53 DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAAD-------NPILLVGNKADLLP-RSVKYPK  119 (369)
T ss_dssp             ------CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTT-------SCEEEEEECGGGSC-TTCCHHH
T ss_pred             CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCC-------CCEEEEEEChhcCC-CccCHHH
Confidence            5555689999999999999999999999999874     577777766554       47889999999975 3455555


Q ss_pred             HHHH
Q psy15036        169 QIMF  172 (179)
Q Consensus       169 ~~~~  172 (179)
                      .+++
T Consensus       120 ~~~~  123 (369)
T 3ec1_A          120 LLRW  123 (369)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.73  E-value=1.7e-05  Score=59.79  Aligned_cols=70  Identities=10%  Similarity=-0.172  Sum_probs=43.2

Q ss_pred             eeCCCchhchhhhhhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036         89 FRFPLVSRFLSLTTGL-YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP  167 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~-~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~  167 (179)
                      |||+|+-    ..+.+ ....+++++|+|.++...  ....+...   .   .      .|+++|+||+|+.+.+.+..+
T Consensus       114 idt~G~~----~~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~------~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          114 IENVGNL----ICPVDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---R------VADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             EEEEEBS----SGGGGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---H------TCSEEEEECGGGHHHHTCCHH
T ss_pred             EeCCCCC----CCCchhccccCcEEEEEeCCCcch--hhhhhhhh---h---h------cCCEEEEecccCCcchhhHHH
Confidence            8998851    11222 246789999999887542  11112111   1   1      356788999999765556777


Q ss_pred             HHHHHHhhh
Q psy15036        168 DQIMFGSTQ  176 (179)
Q Consensus       168 e~~~~a~~~  176 (179)
                      +..+++++.
T Consensus       176 ~~~~~~~~~  184 (221)
T 2wsm_A          176 KMKADAKLI  184 (221)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777776653

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.72  E-value=7.8e-05  Score=61.53  Aligned_cols=31  Identities=6%  Similarity=-0.010  Sum_probs=24.4

Q ss_pred             eeCCCchhch----hhhh---hhhcCCcEEEEEEeCCC
Q psy15036         89 FRFPLVSRFL----SLTT---GLYRGTMGFLLIFDVTN  119 (179)
Q Consensus        89 wDt~G~e~~~----~~~~---~~~~~~~~vilvyDit~  119 (179)
                      ||++|+.++.    .+..   .+++.+|++++|+|.++
T Consensus        74 vDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           74 VDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             EECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             EECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            9999998753    2322   35799999999999986

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.55  E-value=2.4e-05  Score=65.25  Aligned_cols=80  Identities=6%  Similarity=0.003  Sum_probs=39.4

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC-CCcc--cCcceeeeeEEEEEecCCC-----------------ee--eeCCCchh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG-TGTH--GKTVGIVFPAISVTYSIGP-----------------RY--FRFPLVSR   96 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~-~~~~--~~Ti~~~~~~k~v~~~~~~-----------------~i--wDt~G~e~   96 (179)
                      .+||. +|.+|||   +++.+.+.. ....  ..|+...  ...+.+. +.                 .+  ||++|..+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~--~g~v~v~-~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN--ESRVPVP-DERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCS--EEEEECC-CHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce--eEEEEEC-CccceeeccccCcccccccccEEEECCCccc
Confidence            47786 9999999   555555321 1111  1233322  2344444 32                 23  99999987


Q ss_pred             chh-------hhhhhhcCCcEEEEEEeCCChhhHHH
Q psy15036         97 FLS-------LTTGLYRGTMGFLLIFDVTNENSFKD  125 (179)
Q Consensus        97 ~~~-------~~~~~~~~~~~vilvyDit~~~Sf~~  125 (179)
                      +.+       ....+++++|++++|+|.++.+++.+
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~  134 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH  134 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence            654       34568899999999999988766543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.80  E-value=0.0026  Score=48.96  Aligned_cols=65  Identities=12%  Similarity=-0.119  Sum_probs=37.0

Q ss_pred             eeCCCchhchhhhh------hhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036         89 FRFPLVSRFLSLTT------GLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ  159 (179)
Q Consensus        89 wDt~G~e~~~~~~~------~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~  159 (179)
                      |||+|+..+.....      ..+.. ++++++.|...   ..++..+..+....... ..       .|+++|+||+|+.
T Consensus       114 iDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-~~-------~p~~iv~NK~D~~  184 (262)
T 1yrb_A          114 IDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-LG-------ATTIPALNKVDLL  184 (262)
T ss_dssp             EECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HT-------SCEEEEECCGGGC
T ss_pred             EeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-cC-------CCeEEEEeccccc
Confidence            99999987654332      14455 77777777653   33333332222211111 12       4677899999997


Q ss_pred             CCC
Q psy15036        160 RCR  162 (179)
Q Consensus       160 ~~r  162 (179)
                      ..+
T Consensus       185 ~~~  187 (262)
T 1yrb_A          185 SEE  187 (262)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.67  E-value=0.0055  Score=53.01  Aligned_cols=72  Identities=10%  Similarity=-0.031  Sum_probs=52.6

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  .||+|+..|..-...-++-+|++|+|+|...--.-+-..-| ..+.++   +      .|++++.||
T Consensus        93 ~~~~~~-~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~------lp~i~fINK  161 (548)
T 3vqt_A           93 MQFPYR-DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---A------TPVMTFVNK  161 (548)
T ss_dssp             EEEEET-TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---T------CCEEEEEEC
T ss_pred             EEEEEC-CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---C------CceEEEEec
Confidence            345556 7666  99999999998888889999999999998775333444455 333332   2      467777899


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      .|...
T Consensus       162 ~Dr~~  166 (548)
T 3vqt_A          162 MDREA  166 (548)
T ss_dssp             TTSCC
T ss_pred             ccchh
Confidence            99864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.65  E-value=3.8e-05  Score=65.12  Aligned_cols=93  Identities=11%  Similarity=-0.070  Sum_probs=55.5

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCC--e--eeeCCCchh--chhhh--------hhh
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGP--R--YFRFPLVSR--FLSLT--------TGL  104 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~--~--iwDt~G~e~--~~~~~--------~~~  104 (179)
                      ..+|+ +|.+|+|   +.+.+.........+|.+........... +.  .  +||..|++.  ++...        ..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~-g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc-cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46777 9999999   44444321111223343322110001112 22  1  299999843  33332        567


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD  137 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~  137 (179)
                      +..+.|.++|+|.++. +++....|++.+++..
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~  149 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG  149 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence            7788899999999998 7788888988877653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.40  E-value=0.0048  Score=48.84  Aligned_cols=55  Identities=13%  Similarity=-0.141  Sum_probs=39.5

Q ss_pred             CCch-hchhhhhhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         92 PLVS-RFLSLTTGLYRGTMGFLLIFDVTNENSFK--DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        92 ~G~e-~~~~~~~~~~~~~~~vilvyDit~~~Sf~--~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +|+. +........+..+|+++.|+|..++.+..  .+.+|+       ..       .|+++|.||+||.+
T Consensus         7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~-------kp~ilVlNK~DL~~   64 (282)
T 1puj_A            7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KN-------KPRIMLLNKADKAD   64 (282)
T ss_dssp             --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SS-------SCEEEEEECGGGSC
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CC-------CCEEEEEECcccCC
Confidence            5543 44445566789999999999999998875  455553       33       36788899999965

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.016  Score=47.81  Aligned_cols=125  Identities=10%  Similarity=-0.012  Sum_probs=70.0

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCCCee--eeCCCchhch----hhh---hhhhc
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----SLT---TGLYR  106 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----~~~---~~~~~  106 (179)
                      ..+|. +|-++||   +++.+++..  ...|. .|+..  ....+.+. +.++  .||+|--+-.    .+.   -...+
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~--~~g~~~~~-~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVT--VPGVIRYK-GAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCE--EEEEEEET-TEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeee--eeEEEEeC-CcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            35785 9999999   666665332  12232 23332  23456777 8787  8999863221    111   23467


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--------CCCCCHHHHHHHHhhh
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--------CREVVTPDQIMFGSTQ  176 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--------~r~Vs~~e~~~~a~~~  176 (179)
                      .+|++++|.|.+++..  .......++...... ..  + .|.+++.||.|..+        ....+.++.+.+...+
T Consensus       149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~-l~--~-k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~  220 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIR-LN--K-TPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY  220 (376)
T ss_dssp             HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEE-ET--C-CCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred             hcCccccccccCccHH--HHHHHHHHHHHhhHh-hc--c-CChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence            8999999999997632  222333333322111 00  1 24456689999643        2345666666655443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.04  E-value=0.015  Score=52.17  Aligned_cols=65  Identities=11%  Similarity=-0.025  Sum_probs=40.4

Q ss_pred             eeCCCchh-------------chhhhhhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036         89 FRFPLVSR-------------FLSLTTGLY-RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC  154 (179)
Q Consensus        89 wDt~G~e~-------------~~~~~~~~~-~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn  154 (179)
                      +||+|-.+             ...+...|. ..+|++++|.|.++.-+-.....++..+   ....      .|+++|.|
T Consensus       155 VDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L---~~~g------~pvIlVlN  225 (772)
T 3zvr_A          155 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQG------QRTIGVIT  225 (772)
T ss_dssp             EECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH---CTTC------SSEEEEEE
T ss_pred             EECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH---HhcC------CCEEEEEe
Confidence            89999432             334555565 4789999999988643322222233333   2333      47888999


Q ss_pred             CCCcCCCC
Q psy15036        155 LELLQRCR  162 (179)
Q Consensus       155 K~Dl~~~r  162 (179)
                      |+|+.++.
T Consensus       226 KiDlv~~~  233 (772)
T 3zvr_A          226 KLDLMDEG  233 (772)
T ss_dssp             CTTSSCTT
T ss_pred             CcccCCcc
Confidence            99996543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.04  E-value=0.014  Score=51.85  Aligned_cols=62  Identities=13%  Similarity=-0.074  Sum_probs=44.9

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .||+|+..|..-...-++-+|++|+|.|...==.-+-..-|... .+.   +      .|++++-||.|...
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~---~------lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY---G------VPRIVYVNKMDRQG  151 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH---T------CCEEEEEECSSSTT
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc---C------CCeEEEEccccccC
Confidence            89999999998888889999999999998764222222334333 322   2      46677789999754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=95.41  E-value=0.011  Score=51.99  Aligned_cols=70  Identities=9%  Similarity=-0.016  Sum_probs=48.3

Q ss_pred             EEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036         80 VTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL  157 (179)
Q Consensus        80 v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D  157 (179)
                      +..+ +..+  .||+|+..|..-...-++-+|++|+|+|...=-.-+-...| ..+.++.         .|+|++-||.|
T Consensus        62 ~~~~-~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~~---------lp~i~~INKmD  130 (638)
T 3j25_A           62 FQWE-NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKMG---------IPTIFFINKID  130 (638)
T ss_dssp             CBCS-SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHHT---------CSCEECCEECC
T ss_pred             EEEC-CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHcC---------CCeEEEEeccc
Confidence            3445 6666  99999999998888889999999999998753222222334 3333332         34567789999


Q ss_pred             cCC
Q psy15036        158 LQR  160 (179)
Q Consensus       158 l~~  160 (179)
                      ...
T Consensus       131 r~~  133 (638)
T 3j25_A          131 QNG  133 (638)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.08  E-value=0.0047  Score=50.32  Aligned_cols=55  Identities=7%  Similarity=-0.075  Sum_probs=36.8

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|...   ......+.+|++++|+|.+..+.+..+..++        ..      .|+++|.||+|+..
T Consensus       177 iDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~--------~~------~p~ivVlNK~Dl~~  231 (355)
T 3p32_A          177 IETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV--------LE------LADIVVVNKADGEH  231 (355)
T ss_dssp             EEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS--------GG------GCSEEEEECCCGGG
T ss_pred             EeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH--------hh------cCCEEEEECCCCcC
Confidence            99999432   2334568999999999987766554332110        11      36678899999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.98  E-value=0.0084  Score=48.55  Aligned_cols=55  Identities=9%  Similarity=-0.061  Sum_probs=33.0

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |||+|...+..   ...+.+|++++|+|.+..+.++.+...   .  .   .      .|.++|.||+|+.+
T Consensus       154 iDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~--~---~------~p~ivv~NK~Dl~~  208 (341)
T 2p67_A          154 VETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L--M---E------VADLIVINKDDGDN  208 (341)
T ss_dssp             EEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H--H---H------HCSEEEECCCCTTC
T ss_pred             EeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h--h---c------ccCEEEEECCCCCC
Confidence            99999654432   356899999999999765443221110   0  0   1      35678899999965

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.76  E-value=0.062  Score=44.50  Aligned_cols=76  Identities=9%  Similarity=0.050  Sum_probs=44.1

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCC-----------------Cee--eeCCCchh-
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIG-----------------PRY--FRFPLVSR-   96 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~-----------------~~i--wDt~G~e~-   96 (179)
                      ..++. +|.+|+|   +++.+.+..  .....|....+.....+.+. +                 ..+  ||++|... 
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~-~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP-DERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC-CHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeC-CcchhhhhhhcccccccCcceEEEeccccccC
Confidence            46785 9999999   666666421  11122211112222344444 4                 123  99999543 


Q ss_pred             ------chhhhhhhhcCCcEEEEEEeCCC
Q psy15036         97 ------FLSLTTGLYRGTMGFLLIFDVTN  119 (179)
Q Consensus        97 ------~~~~~~~~~~~~~~vilvyDit~  119 (179)
                            +......+++.+|+++.|+|..+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234456789999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=93.62  E-value=0.076  Score=43.08  Aligned_cols=55  Identities=7%  Similarity=-0.037  Sum_probs=30.7

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +||+|...   ........+|.+++|+|.++.+..+.+..   .+    -.       .|.++|.||+|+.+
T Consensus       172 iDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~-------~~~ivVlNK~Dl~~  226 (349)
T 2www_A          172 IETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IE-------MADLVAVTKSDGDL  226 (349)
T ss_dssp             EECCCC-----CHHHHHTTCSEEEEEECCC-------------------CC-------SCSEEEECCCSGGG
T ss_pred             EECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----Hh-------cCCEEEEeeecCCC
Confidence            99999531   12345779999999999987644332221   11    11       24567789999853

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.29  E-value=0.21  Score=39.96  Aligned_cols=55  Identities=9%  Similarity=-0.014  Sum_probs=36.6

Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036         98 LSLTTGLYRGTMGFLLIFDVTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus        98 ~~~~~~~~~~~~~vilvyDit~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ..+.+....++|.+++|+|..++.+ ...+.+++..+..  ..       .+++||-||+||.+.
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~-------~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--ND-------IQPIICITKMDLIED  132 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TT-------CEEEEEEECGGGCCC
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CC-------CCEEEEEECCccCch
Confidence            3445556889999999999987654 4444555443332  12       355677899999753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=91.79  E-value=0.036  Score=43.23  Aligned_cols=52  Identities=13%  Similarity=0.068  Sum_probs=27.3

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCe-eeeCCCchh
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-YFRFPLVSR   96 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-iwDt~G~e~   96 (179)
                      ++++ +|.+|||   +++.+.+.......++.|.+.....+.++ ... +|||+|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE-NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT-TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC-CCEEEEECCCccc
Confidence            6887 9999999   55555544333344555554443445555 333 399999753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=91.67  E-value=0.056  Score=42.14  Aligned_cols=45  Identities=9%  Similarity=-0.052  Sum_probs=34.1

Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        100 LTTGLYRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       100 ~~~~~~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .......++|+++.|+|..++.+..+  +. |+        .       .|.++|.||+||.+
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~-------k~~iivlNK~DL~~   60 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------R-------KETIILLNKVDIAD   60 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------T-------SEEEEEEECGGGSC
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------C-------CCcEEEEECccCCC
Confidence            34557889999999999999877754  22 32        2       47788899999965

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=87.05  E-value=0.059  Score=44.09  Aligned_cols=106  Identities=9%  Similarity=0.042  Sum_probs=51.9

Q ss_pred             eEEE-EeCCCCc---eeEeeecc-----CCCcccCcceeeeeEEEEEecCCCee-eeCCCchhchh--------hhhhhh
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYL-----GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVSRFLS--------LTTGLY  105 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~-----~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e~~~~--------~~~~~~  105 (179)
                      .+++ +|..|||   +++.+.+.     ......+.-|.+.....+.++ .... .||+|-.....        ....++
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~  241 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIIT  241 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence            3576 9999999   44444422     011011111111222344555 3333 99999543221        112222


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        106 --RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       106 --~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                        +..+.++++.+....--+..+..    +.......      .|++++.||.|..+
T Consensus       242 ~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~------~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          242 PKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGR------RSFVCYMANELTVH  288 (369)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTEE----EEEEESSS------EEEEEEECTTSCEE
T ss_pred             cccccCceEEEEcCCceEEECCEEE----EEEccCCC------ceEEEEecCCcccc
Confidence              56788888887632211111111    11112222      57889999999865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=86.56  E-value=1.4  Score=35.95  Aligned_cols=48  Identities=8%  Similarity=0.064  Sum_probs=31.4

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ...++|.+++|....-.-+...+.+++-......         .+++||-||+||.+
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~---------~~~iivlNK~DL~~  174 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETLQ---------VEPLIVLNKIDLLD  174 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHT---------CEEEEEEECGGGCC
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcC---------CCEEEEEECccCCC
Confidence            3578999999987653334555566655544332         24477889999965

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=85.13  E-value=0.35  Score=37.94  Aligned_cols=53  Identities=15%  Similarity=0.126  Sum_probs=26.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCch
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVS   95 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e   95 (179)
                      ..++++ +|.++||   +++.+.+.......++.|.+.....+.++ .... |||+|--
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence            357887 9999999   55555543222222222322222234445 4433 9999964

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=84.38  E-value=0.54  Score=37.81  Aligned_cols=34  Identities=18%  Similarity=-0.002  Sum_probs=22.5

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN  121 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~  121 (179)
                      +..+  +||+|...-   .......+|.+++++|....+
T Consensus       147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~  182 (337)
T 2qm8_A          147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGD  182 (337)
T ss_dssp             TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC--
T ss_pred             CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcc
Confidence            4444  999996432   123457899999999986544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=83.87  E-value=0.13  Score=42.13  Aligned_cols=106  Identities=8%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             eEEE-EeCCCCc---eeEeeeccC------CCcccCcceeeeeEEEEEecCCCe-eeeCCCchhchh----hh----hhh
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLG------TGTHGKTVGIVFPAISVTYSIGPR-YFRFPLVSRFLS----LT----TGL  104 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~------~~~~~~Ti~~~~~~k~v~~~~~~~-iwDt~G~e~~~~----~~----~~~  104 (179)
                      .+++ +|..|||   +++.+.+..      .....+.-|.+.....+.++ +.. +.||+|-.....    +.    ..+
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~  239 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKLI  239 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence            4676 9999999   554444321      11111222222223445555 333 399999643221    11    111


Q ss_pred             --hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        105 --YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       105 --~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                        .+..+.++++.+.....-+..+..    +.......      .|++++.||.|..+
T Consensus       240 ~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~------~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          240 TPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGR------RAFTCHFSNRLTIH  287 (368)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSS------EEEEEEECTTSCEE
T ss_pred             ccccccCceEEEEcCCCEEEEcceEE----EEEecCCC------ceEEEEecCccccc
Confidence              245677777776522211111110    11111222      57889999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.89
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.87
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.8
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.79
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.78
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.76
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.7
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.64
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.63
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.63
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.53
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.49
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.45
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.37
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.32
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.29
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.25
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.21
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.69
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.66
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.63
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.59
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.58
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.1
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.98
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.97
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.78
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.38
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.34
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.27
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.25
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.21
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.98
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.84
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.76
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.61
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.5
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.01
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.74
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.51
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.38

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-29  Score=183.27  Aligned_cols=131  Identities=23%  Similarity=0.375  Sum_probs=111.5

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      +|.|||+ +|++|||   ++.++. +.|.+.+.||++.++..+.+..+ +..+    ||++|+++++.+++.|+++++++
T Consensus         1 ~y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   79 (167)
T d1z08a1           1 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-GKRVNLAIWDTAGQERFHALGPIYYRDSNGA   79 (167)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-SCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccC-CccceeeeeccCCcceecccchhhccCCcee
Confidence            4899998 9999999   666555 77899999999999888888888 7776    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |+|||+++++||+++..|++.+.......      +|++|||||+|+.++|+|+.+|++++|++++.
T Consensus        80 i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~------~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~  140 (167)
T d1z08a1          80 ILVYDITDEDSFQKVKNWVKELRKMLGNE------ICLCIVGNKIDLEKERHVSIQEAESYAESVGA  140 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGG------SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred             EEEEeCCchhHHHhhhhhhhhcccccccc------cceeeeccccccccccccchHHHHHHHHHcCC
Confidence            99999999999999999999988776655      78899999999999999999999999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.1e-28  Score=178.44  Aligned_cols=133  Identities=26%  Similarity=0.424  Sum_probs=120.2

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      +|++.+||+ +|++|||   +++++. +.+.+.+.+|++.++..+.+.++ +..+    |||+|+++|..+++.|+++++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~   79 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSYYRSAN   79 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhccc
Confidence            589999998 9999999   666655 67788899999999998999988 8776    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      ++++|||+++++||+++..|+..+.+.....      +|++|||||+|+.++++++.++++++|++.+.
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~  142 (171)
T d2ew1a1          80 ALILTYDITCEESFRCLPEWLREIEQYASNK------VITVLVGNKIDLAERREVSQQRAEEFSEAQDM  142 (171)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred             eEEEeeecccchhhhhhhhhhhhhccccccc------ccEEEEEeecccccccchhhhHHHHHHHhCCC
Confidence            9999999999999999999999998876665      78999999999999999999999999988653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.6e-27  Score=175.61  Aligned_cols=132  Identities=27%  Similarity=0.399  Sum_probs=118.1

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      +|+|.|||+ +|++|||   ++.++. +.+.+.+.++.+.+...+.+... +..+    |||+|+++|..+++.++++++
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~wDt~G~e~~~~~~~~~~~~ad   79 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-DKRIKLQIWDTAGQERYRTITTAYYRGAM   79 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTTTTCC
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEee-cceEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            478999998 9999999   666655 66788999999988888888877 6665    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||.++..|+..+.......      +|+++||||+|+.+++.|+.++++++|++++
T Consensus        80 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~  141 (169)
T d3raba_          80 GFILMYDITNEESFNAVQDWSTQIKTYSWDN------AQVLLVGNKCDMEDERVVSSERGRQLADHLG  141 (169)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCSC------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             EEEEEEECccchhhhhhhhhhhhhhcccCCc------ceEEEEEeecccccccccchhhhHHHHHHcC
Confidence            9999999999999999999998888776665      7899999999999999999999999998865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.8e-27  Score=175.55  Aligned_cols=129  Identities=14%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      +|||+ +|+++||   ++.++. +.+.+.+.||++..+ .+.+.++ +..+    ||++|++++..+++.|+++++++++
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEID-NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEET-TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccc-cccccccccccccccccccchhhhhhhccEEEE
Confidence            69998 9999999   555554 678889999998655 5667777 7776    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |||+++++||++++.|+.++.+.....     ..|++|||||+|+.++|+|+.+|+++||++++.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~-----~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~  141 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRE-----SFPMILVANKVDLMHLRKVTRDQGKEMATKYNI  141 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSS-----CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC
T ss_pred             ecccccchhhhccchhhHHHHhhcccc-----CccEEEEecccchhhhceeehhhHHHHHHHcCC
Confidence            999999999999999999998775432     168899999999999999999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-27  Score=173.85  Aligned_cols=131  Identities=21%  Similarity=0.432  Sum_probs=118.2

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      |+|.|||+ +|+++||   +++++. +.+.+.+.++.+.++..+.+.++ +..+    ||++|++++..++..+++++++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~   79 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTRSYYRGAAG   79 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-TEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEEC-CEEEEEEEeccCCchhHHHHHHHHhcCCcE
Confidence            68999998 9999999   555554 67888899999988888888888 8766    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+.+..|+..+.+.....      +|+++||||+|+...+.++.++++++|++..
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~  140 (166)
T d1z0fa1          80 ALMVYDITRRSTYNHLSSWLTDARNLTNPN------TVIILIGNKADLEAQRDVTYEEAKQFAEENG  140 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEeccCchHHHHHHHHHHHHHHhhcccc------ceEEEEcccccchhhcccHHHHHHHHHHHcC
Confidence            999999999999999999999998776665      7999999999999999999999999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=175.49  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=96.7

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      |||+ +|++|||   +++++.......+.+|.+..+ .+.+.++ +..+    ||++|+++|+.+++.|++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~-~~~i~~~-~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVD-GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEE-EEEEEET-TEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeee-cceeecc-ccccceeeeecccccccceecccchhhhhhhceec
Confidence            8998 9999999   666666554555566666444 5778888 8776    999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |+++++||+++..|+.++.+.....     .+|++|||||+||.++|+|+.+|++++|++.+.
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~-----~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~  137 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTD-----DVPIILVGNKSDLVRSREVSVDEGRACAVVFDC  137 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTS
T ss_pred             cccccccccccccccchhhcccccc-----cceEEEeecccchhhhcchhHHHHHHHHHhcCC
Confidence            9999999999999999998765432     168999999999999999999999999998753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-27  Score=172.59  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=114.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|++|||   ++.++. +.|.+.+.||++.++ .+.+.++ +..+    ||++|+++|..++..+++.++++|
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEET-TEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecC-cEEEEeeecccccccccccccchhhhhhhhhh
Confidence            468998 9999999   666654 678889999999876 4778888 8877    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|||+++++||+++..|+.++.+.....     .+|++|||||+||..+|+|+.+++++||++++.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~  141 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKV-----QIPIMLVGNKKDLHMERVISYEEGKALAESWNA  141 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred             hhcccchhhhhhhhhhhhhhhhhccccc-----ccceeeeccccccccccchhHHHHHHHHHHcCC
Confidence            9999999999999999999998765442     178999999999999999999999999998753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2e-27  Score=174.09  Aligned_cols=127  Identities=15%  Similarity=0.195  Sum_probs=114.8

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++. +.+.+.+.||++.++..+....+ +..+    ||++|++++..+.+.++++++++++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   80 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   80 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeec-CceeeeeeeccCCccchhhhhhhhhccCceEEE
Confidence            47998 9999999   665555 77889999999988888888877 7666    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|++++.+..+.       +|++|||||+|+.++|+++.++++++|++..
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~  137 (164)
T d1z2aa1          81 VFSTTDRESFEAISSWREKVVAEVGD-------IPTALVQNKIDLLDDSCIKNEEAEGLAKRLK  137 (164)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCS-------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred             EEeccchhhhhhcccccccccccCCC-------ceEEEeeccCCcccceeeeehhhHHHHHHcC
Confidence            99999999999999999999988766       6889999999999999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-26  Score=169.43  Aligned_cols=130  Identities=20%  Similarity=0.343  Sum_probs=115.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|+++||   +++++. +.|.+.+.||.+..+.......+ +...    ||++|++++..++..|+++++++|
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccccc-ccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            368998 9999999   666665 77889999999988877777666 5554    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|||+++++||+++..|+..+.+....+      +|++|||||+|+.++|.++.+|+++||++...
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~  141 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPS------IVVAIAGNKCDLTDVREVMERDAKDYADSIHA  141 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTT------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCc------ceEEEecccchhccccchhHHHHHHHHHHcCC
Confidence            9999999999999999999998877665      79999999999999999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=168.92  Aligned_cols=128  Identities=22%  Similarity=0.307  Sum_probs=115.9

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      |||+ +|++|||   +++++. +.+.+.+.++++.+........+ +..+    ||++|++++..+++.++++++++++|
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv   79 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVV   79 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECS-SCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccC-CCceeeeecccCCcchhccchHHHhhccceEEEe
Confidence            6998 9999999   666655 67888999999988887888887 7776    99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      ||+++++||+++.+|+.++.+....+      +|++|||||+|+.+++.++.++++++|+++..
T Consensus        80 ~d~~~~~s~~~i~~~~~~~~~~~~~~------~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~  137 (164)
T d1yzqa1          80 YDITNVNSFQQTTKWIDDVRTERGSD------VIIMLVGNKTDLADKRQVSIEEGERKAKELNV  137 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTS------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred             eccccccchhhhHhhHHHHHHhcCCC------ceEEEEecccchhhhhhhhHHHHHHHHHHcCC
Confidence            99999999999999999998877665      79999999999999999999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=8.9e-27  Score=171.58  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=109.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ++||+ +|+++||   ++.++. +.|.+.|.||++.++. +.+.++ +..+    ||++|++++..++..++++++++++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~-~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-TEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccc-cccccccccccccccchhhhhhhcccccceeEE
Confidence            78998 9999999   665554 7788999999997764 667788 7776    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|++++.+.....     .+|++|||||+|+.++|+|+.++++++|++..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~  140 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN  140 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT-----TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCC-----CCcEEEEeccccccccccccHHHHHHHHHHcC
Confidence            999999999999999999998875432     16899999999999999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-27  Score=176.51  Aligned_cols=134  Identities=27%  Similarity=0.375  Sum_probs=115.1

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe------------e--eeCCCchhchh
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR------------Y--FRFPLVSRFLS   99 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~------------i--wDt~G~e~~~~   99 (179)
                      +|++++||+ +|++|||   +++++. +.+.+.+.+|.+.++..+.+.++ +..            +  ||++|+++|+.
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~i~dt~G~e~~~~   79 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN-AQGPNGSSGKAFKVHLQLWDTAGQERFRS   79 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEE-C-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEe-cccccccccccceEEeccccCCcchhhHH
Confidence            589999998 9999999   665555 66788899999988887887776 432            2  99999999999


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        100 LTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       100 ~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +++.++++++++|+|||+++++||+.+..|+.++.+.....     .+|++|||||+||.++|+|+.+++++||++++.
T Consensus        80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~  153 (186)
T d2f7sa1          80 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-----NPDIVLIGNKADLPDQREVNERQARELADKYGI  153 (186)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTT-----CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCC-----CceEEEEeeeccchhhhcchHHHHHHHHHHcCC
Confidence            99999999999999999999999999999998876554332     278999999999999999999999999998753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-27  Score=172.14  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=110.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .|||+ +|++|||   ++.++. +.+.+.+.||++..+ .+...++ +..+    ||++|+++|...+..++++++++++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCD-KSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEET-TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeec-cccceeccccccccccccccccccccceeEEEE
Confidence            58998 9999999   555544 677889999999655 4566777 7665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+.++.+.....    ...|++|||||+|+.++|+|+.+|+++||++..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~----~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~  139 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDV----ESIPIMLVGNKCDESPSREVQSSEAEALARTWK  139 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred             EeecccccchhcccchhhhhhhhhccC----CCCcEEEEeecccccccccccHHHHHHHHHHcC
Confidence            999999999999999999988765421    126899999999999999999999999999875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=172.31  Aligned_cols=129  Identities=20%  Similarity=0.192  Sum_probs=108.3

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      ....+||+ +|++|||   ++.++. +.|.+.+.||++ ++..+.+.++ +..+    ||++|+++|..++..|++++|+
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~-~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESS-SCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeC-CceEEeecccccccchhhhhhhhcccccce
Confidence            45689998 9999999   555554 678899999998 4556778888 8777    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|||+++++||+++. .|...++... .+      .|++|||||+||.+            +|.|+.+|+.++|++++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~~------~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~  156 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYA-PN------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG  156 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TT------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcC-CC------CCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcC
Confidence            99999999999999986 4555555544 33      68899999999864            68999999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.7e-26  Score=168.78  Aligned_cols=133  Identities=26%  Similarity=0.409  Sum_probs=100.1

Q ss_pred             ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      +.|++.|||+ +|+++||   +++++. +.+.+.+.+|++.++..+.+.++ +..+    ||++|+++|..+++.+++++
T Consensus         1 ~~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~~~~~   79 (173)
T d2fu5c1           1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGA   79 (173)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-TEEEEEEEEEC---------CCTTTTTC
T ss_pred             CcccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHhccCC
Confidence            3689999998 9999999   666555 66788899999999988999998 7766    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++|+|||+++++||+.+..|...+......+      .|+++||||+|+...+.+..+++.+++++..
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~  142 (173)
T d2fu5c1          80 MGIMLVYDITNEKSFDNIRNWIRNIEEHASAD------VEKMILGNKCDVNDKRQVSKERGEKLALDYG  142 (173)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEEC--CCSCCCSCHHHHHHHHHHHT
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHhhhhccCC------ceEEEEEecccchhhcccHHHHHHHHHHhcC
Confidence            99999999999999999999999998776665      6899999999999999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=169.36  Aligned_cols=130  Identities=20%  Similarity=0.201  Sum_probs=113.3

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      ...+||+ +|++|||   +++++. +.+.+.+.||.. ++..+.+.++ +..+    ||++|+++|..++..++++++++
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVD-GIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEET-TEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccC-Ceeeeeeccccccccccccccchhhccceee
Confidence            4589998 9999999   665555 678888888875 5556888888 8877    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+|||+++++||+++..|+..+.+.....     .+|++|||||+||.++|+++.++++.+|+++.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~  142 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRD-----DFPVVLVGNKADLESQRQVPRSEASAFGASHH  142 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSS-----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             eeecccccccccchhhhhhHHHHHHhccC-----CCceEEEEEeechhhccccchhhhhHHHHhcC
Confidence            99999999999999999999988765332     16899999999999999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=169.70  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=107.2

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++. +.|.+.+.||++.++. +.+..+ +..+    ||++|++.+. .+..|+++++++++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~-~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~il   78 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATID-DEVVSMEILDTAGQEDTI-QREGHMRWGEGFVL   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-TEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-cccccc-ccceEEEEeecccccccc-cchhhhccccccee
Confidence            47998 9999999   555555 7788999999998875 445566 7666    9999999885 56679999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCC-ccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGA-LFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~-~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |||+++++||+++..|+..+.+.... +      +|++|||||+||.++|+|+.+|++++|++++.
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~  138 (168)
T d2atva1          79 VYDITDRGSFEEVLPLKNILDEIKKPKN------VTLILVGNKADLDHSRQVSTEEGEKLATELAC  138 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSC------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS
T ss_pred             ecccCCccchhhhhhhcccccccccccC------cceeeeccchhhhhhccCcHHHHHHHHHHhCC
Confidence            99999999999999998877655443 3      78999999999999999999999999998753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-26  Score=167.72  Aligned_cols=128  Identities=20%  Similarity=0.319  Sum_probs=114.6

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .|||+ +|++|||   ++.++. +.+.+.+.||.+.++....+... +..+    ||++|+++|..+++.++++++++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeecc-ceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            68998 9999999   655655 77889999999988877777776 6665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|...+.+....+      +|++|||||+|+.++|.|+.++++++|++..
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~  142 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPN------IVIALSGNKADLANKRAVDFQEAQSYADDNS  142 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCC------ceEEeecccccccccccccHHHHHHHHHhcC
Confidence            999999999999999999998776665      7999999999999999999999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.4e-26  Score=170.54  Aligned_cols=132  Identities=25%  Similarity=0.408  Sum_probs=119.1

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      +|++.|||+ +|+.+||   ++.++. ..+.+.+.||.+..+..+.+.++ +..+    |||+|+++|..+++.|+++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~   80 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSYYRGSH   80 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEe-eEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            789999998 9999999   666655 66788999999988887888888 7776    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||++++++|..+..|...+.+.....      .|++|||||+|+.+++.++.+++..++++..
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~------~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYATST------VLKLLVGNKCDLKDKRVVEYDVAKEFADANK  142 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcccCC------ceEEEEEeccccccccchhHHHHhhhhhccC
Confidence            9999999999999999999999998776665      7999999999999999999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-26  Score=167.78  Aligned_cols=127  Identities=15%  Similarity=0.153  Sum_probs=111.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..|||+ +|++|||   +++++. +.|.+.+.||++..+ .+.+.++ +..+    ||++|++.+..+++.|+++++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESS-SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEee-eeEEEeccccccCcccccccccccccccceeE
Confidence            368998 9999999   666555 778899999999766 4667777 7776    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      +|||+++++||+++..|+..+.+... .+      .|++|||||+|+..++.++.+++..+|++.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~------~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~  138 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTED------VPMILVGNKCDLEDERVVGKEQGQNLARQW  138 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSC------CCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCC------CeEEEEEEecCcccccccchhHHHHHHHHh
Confidence            99999999999999999999987653 33      689999999999999999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7e-26  Score=167.17  Aligned_cols=132  Identities=23%  Similarity=0.416  Sum_probs=117.5

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM  109 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~  109 (179)
                      .|+|++||+ +|+.|||   ++.++. +.+.+.+.+|.+.......+..+ +..+    ||++|++++..+++.++++++
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-GKYVKLQIWDTAGQERFRSVTRSYYRGAA   79 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEec-CcceeEEEEECCCchhhhhhHHHHhhhCC
Confidence            378999998 9999999   666655 67889999999988777777666 6555    999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|+|||+++++||.++..|+..+.+....+      +|+++||||+|+..+++++.+++.++|++..
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piivv~nK~D~~~~~~~~~~~~~~~~~~~~  141 (174)
T d2bmea1          80 GALLVYDITSRETYNALTNWLTDARMLASQN------IVIILCGNKKDLDADREVTFLEASRFAQENE  141 (174)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEEecccchhHHHHhhhhcccccccCCc------eEEEEEEecccccchhchhhhHHHHHHHhCC
Confidence            9999999999999999999999998877665      7999999999999999999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.9e-26  Score=166.69  Aligned_cols=130  Identities=25%  Similarity=0.421  Sum_probs=110.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      +|++||+ +|++|||   ++.++. +.+.+.+.++.+.+......... +..+    ||++|++.+..+++.+++++|++
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~   79 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-GKQIKLQIWDTAGQESFRSITRSYYRGAAGA   79 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-TEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeee-eeEEEEEeecccCccchhhHHHHHhhccCEE
Confidence            4889998 9999999   555544 66788888888877777777666 6555    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |+|||+++++||+.+..|+.++.+....+      +|++|||||+|+..+|.+..+++..+|+++.
T Consensus        80 ilv~d~~~~~sf~~~~~~~~~~~~~~~~~------~piilv~nK~D~~~~~~~~~~~~~~~a~~~~  139 (173)
T d2a5ja1          80 LLVYDITRRETFNHLTSWLEDARQHSSSN------MVIMLIGNKSDLESRRDVKREEGEAFAREHG  139 (173)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             EEEEeecChHHHHhHHHHHHHHHHhCCCC------CeEEEEecCCchhhhhhhHHHHHHHHHHHcC
Confidence            99999999999999999999998876665      7999999999999999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=169.76  Aligned_cols=125  Identities=16%  Similarity=0.209  Sum_probs=104.7

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      -.|||+ +|+.+||   ++.++. +.+.+.+.||++.++..+.+.++ +..+    ||++|++++..+++.|++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBT-TCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccc-cccccccccccccccccceecchhcccccchh
Confidence            368998 9999999   555544 66888999999999988888888 7776    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      +|||+++++||+++..|+.++.+..+.       +|++|||||+||..++..  +++.++|+++
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~~~~-------~piilvgnK~Dl~~~~~~--~~~~~~~~~~  135 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGNKVDIKDRKVK--AKSIVFHRKK  135 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHHHCS-------CCEEEEEECCCCSCSCCT--TTSHHHHSSC
T ss_pred             hccccccccccchhHHHHHHHhhccCC-------Cceeeecchhhhhhhhhh--hHHHHHHHHc
Confidence            999999999999999999999887654       789999999999876544  3456677654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.6e-25  Score=166.58  Aligned_cols=127  Identities=14%  Similarity=0.033  Sum_probs=106.3

Q ss_pred             eeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++ .+.|.+.+.||++. ...+.+.++ +..+    ||++|++.+..+++.+++++|++|+
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   79 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECS-SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-ccccccccc-ceEEeeccccccccccccccccchhhhhhhhhe
Confidence            47998 9999999   55444 47788999999984 445777888 8887    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+.........+      +|++|||||+|+..            +|.|+.+|+.++|+++.
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~  149 (179)
T d1m7ba_          80 CFDISRPETLDSVLKKWKGEIQEFCPN------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  149 (179)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTT------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             eeecccCCCHHHHHHHHHHHHhccCCc------ceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC
Confidence            999999999999976555544444344      79999999999863            67899999999999865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=164.56  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=111.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .|||+ +|++|||   ++.++. +.+.+.+.||++ ++..+.+.++ +..+    ||++|++.+..++..++++++++++
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVD-SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecC-cceEeeccccCCCccccccchHHHhhcccceee
Confidence            68998 9999999   555555 678888999998 4556777777 7766    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |||+++++||+++..|+.++.+.....     ..|++|||||+|+.++|.++.++++.+|+++..
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~  140 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYE-----KVPVILVGNKVDLESEREVSSSEGRALAEEWGC  140 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTS-----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCC-----CCCEEEEEEccchhhcccchHHHHHHHHHHcCC
Confidence            999999999999999999988765431     168999999999999999999999999998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-25  Score=165.30  Aligned_cols=131  Identities=22%  Similarity=0.450  Sum_probs=113.8

Q ss_pred             CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG  110 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~  110 (179)
                      |++++||+ +|+.+||   ++.++. +.+...+.++.+.+...+.+.++ +..+    ||++|+++|..++..+++.+++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~   79 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERYRRITSAYYRGAVG   79 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-TEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEEC-CEEEEEEecccCCcHHHHHHHHHHhhccCe
Confidence            58999998 9999999   665554 66788888888888877888888 7776    9999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +|+|||+++++||+.+..|+.++.+....+      +|++|||||+|+.+++.+..+++..++++..
T Consensus        80 ~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~  140 (175)
T d2f9la1          80 ALLVYDIAKHLTYENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNN  140 (175)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcccchhHHHHHHHHHHhcCCC------CcEEEEEeeecccccccchHHHHHHhhcccC
Confidence            999999999999999999999999887765      7999999999999989999998888887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.9e-25  Score=163.23  Aligned_cols=130  Identities=22%  Similarity=0.229  Sum_probs=111.4

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh-hhhhhhcCCcEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS-LTTGLYRGTMGFL  112 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~-~~~~~~~~~~~vi  112 (179)
                      .|||+ +|++|||   +++++. +.+.+.+.+|.+..+..+...+. +...    ||+.|++.+.. .++.|++++|++|
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeee-ccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            68998 9999999   666655 77889999999988877777776 5554    99999887765 5678999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      +|||+++++||+++..|+.++.+.....     .+|++|||||+||.++|+|+.+++++||++++.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~  141 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLAN-----DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM  141 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCC-----CCeEEEEeccccchhccchhHHHHHHHHHHCCC
Confidence            9999999999999999999998765432     178999999999999999999999999998763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=165.29  Aligned_cols=127  Identities=12%  Similarity=-0.010  Sum_probs=104.3

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ..||+ +|++|||   ++.++. +.+.+.+.||++. ...+...++ +..+    ||++|++.|..+++.|+++++++|+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   79 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVD-GKQVELALWDTAGLEDYDRLRPLSYPDTDVILM   79 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEET-TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecccccccc-ccceeeeccccCccchhcccchhhcccchhhhh
Confidence            47998 9999999   555554 7788999999984 445667777 6665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|.....+....+      .|++|||||+|+.+            ++.|+.+|++++|++..
T Consensus        80 v~d~~~~~Sf~~~~~~~~~~~~~~~~~------~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~  149 (177)
T d1kmqa_          80 CFSIDSPDSLENIPEKWTPEVKHFCPN------VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG  149 (177)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTT------SCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhCCC------CceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            999999999999976554444444343      68999999999963            46799999999998865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=164.54  Aligned_cols=128  Identities=17%  Similarity=0.163  Sum_probs=107.9

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .|||+ +|++|||   +++++. +.+.+.+.||.+ +...+.+.++ +..+    ||++|++++..+++.++++++++++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVID-DRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEET-TEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeec-ccccccccccccccccccccccccccccceEEE
Confidence            58998 9999999   665555 667889999988 4556788888 8776    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||+++..|+.++.+.....     ..|++|||||+|+.++|.++.+++.++|++.+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~  141 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRD-----EFPMILIGNKADLDHQRQVTQEEGQQLARQLK  141 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSS-----CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTT
T ss_pred             eeccccccchhhHHHHhHHHHhhcccC-----CCCEEEEEeccchhhhccchHHHHHHHHHHcC
Confidence            999999999999999999988765432     16888999999999999999999999999875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=167.30  Aligned_cols=126  Identities=17%  Similarity=0.128  Sum_probs=104.4

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|++|||   ++.++. +.|.+.+.||++.. ..+...++ +..+    ||++|+++|..+++.+|+++|++++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEET-TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeC-Cceeeeeccccccchhhhhhhhhcccccceeec
Confidence            68998 9999999   555554 77889999999954 45666677 7665    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC------------CCCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ------------RCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~------------~~r~Vs~~e~~~~a~~~  176 (179)
                      |||+++++||+++..|+.+.......+      +|+++||||+||.            .++.|+.+++++||++.
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~------~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPK------TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL  149 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTT------CCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCC------CceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc
Confidence            999999999999976544444444443      6899999999985            35679999999999885

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4e-25  Score=162.48  Aligned_cols=129  Identities=19%  Similarity=0.247  Sum_probs=114.4

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ++||+ +|++|||   ++.++. +.|.+.+.||++.++..+.+..+ +..+    ||++|++++..+++.+++++|++++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-EHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccc-cccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            58998 9999999   555554 77889999999999988888888 7776    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC---CCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR---CREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~---~r~Vs~~e~~~~a~~~~~  178 (179)
                      |||+++++||+++..|+.++.+.....      +++++||||+|+.+   .|+|+.++++++|+++..
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~  143 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKD------IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGL  143 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC
T ss_pred             EEeCCcccchhhhhhhhhhhccccccc------cceeeeecccccccccchhhhhHHHHHHHHHHcCC
Confidence            999999999999999999888776665      78899999999854   589999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-25  Score=163.03  Aligned_cols=132  Identities=27%  Similarity=0.351  Sum_probs=107.7

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~  108 (179)
                      -|++.|||+ +|+++||   +++++. +.+. ..+.++++.++....+..+ +..+    |||+|++++..+++.+++++
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~~   80 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-GVKVKLQMWDTAGQERFRSVTHAYYRDA   80 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-TEEEEEEEEECCCC--------CCGGGC
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEec-CcEEEEEEEECCCchhhHHHHHHhhcCC
Confidence            489999998 9999999   565554 5554 4456778888888888888 8766    99999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++++|||+++++||..+..|+..+.+.....      .|++|||||+|+.+++.|+.+++..+|++..
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~  143 (170)
T d2g6ba1          81 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHD------VALMLLGNKVDSAHERVVKREDGEKLAKEYG  143 (170)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECCSTTSCCCSCHHHHHHHHHHHT
T ss_pred             ceeEEEecCCcccchhhhhhhhhhhhhccCCC------ceEEEEEeeechhhcccccHHHHHHHHHHcC
Confidence            99999999999999999999999988777655      6889999999999999999999999999865

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.1e-26  Score=166.70  Aligned_cols=128  Identities=14%  Similarity=0.195  Sum_probs=103.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeeec-cC-CCcccCcceeeeeEEEEEecCCCee----ee---CCCchhchhhhhhhhcCC
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKY-LG-TGTHGKTVGIVFPAISVTYSIGPRY----FR---FPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~-~~-~~~~~~Ti~~~~~~k~v~~~~~~~i----wD---t~G~e~~~~~~~~~~~~~  108 (179)
                      ..|||+ +|++|||   ++.++.. .+ ...+.+|.+.+++.+.+.++ +..+    ||   ++|+++|  ++..|++++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~   78 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD-GESATIILLDMWENKGENEW--LHDHCMQVG   78 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEET-TEEEEEEEECCTTTTHHHHH--HHHCCCCCC
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccC-Cceeeeeeeccccccccccc--ccccccccc
Confidence            369998 9999999   6666553 22 24456778888888889888 7765    55   5677877  677899999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |++|+|||+++++||+++..|+.++.+... .+      +|++|||||+||.++|+|+.++++++|++++.
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~------~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~  143 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRARQTED------IPIILVGNKSDLVRCREVSVSEGRACAVVFDC  143 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTT------SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhccccCC------ceEEEEeccccccccccccHHHHHHHHHHcCC
Confidence            999999999999999999999999886543 23      78999999999999999999999999988753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=153.55  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=109.7

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      +..|||+ +|+++||   ++.++. +.+.+.+.+|++.....+.+..+ +..+    ||++|+.++......+++.++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-TEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeec-CceeeEeeecccCcceehhhhhhhhhccceE
Confidence            4589998 9999999   555554 77888999999988888888887 7766    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      +++||++++.||+.+..|++++.+......  .+..|++|||||+|+.+ |+++.+|+++||+++.
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~  145 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKE--PESFPFVILGNKIDISE-RQVSTEEAQAWCRDNG  145 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSC--TTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTT
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhcccc--CCCceEEEeccccchhh-ccCcHHHHHHHHHHcC
Confidence            999999999999999999999987653321  12268999999999964 8999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=153.12  Aligned_cols=128  Identities=18%  Similarity=0.207  Sum_probs=109.5

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .|||+ +|+++||   ++.++. +.+.+.+.||++.++. ..+... +..+    ||++|++.+...++.+++.++++++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEET-TEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeee-ceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            48998 9999999   665555 6688899999998775 445566 6666    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS  178 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~  178 (179)
                      |||+++++||+++..|+..+.+.....     ..|++|||||+|+. ++.++.+++++||++++.
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~  139 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSD-----DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGI  139 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCS-----SCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTC
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCC-----CCeEEEEecccccc-cccccHHHHHHHHHHhCC
Confidence            999999999999999999998876432     16899999999996 478999999999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=8.7e-24  Score=155.63  Aligned_cols=132  Identities=22%  Similarity=0.261  Sum_probs=95.5

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe-e----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR-Y----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~-i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      .+||+ +|+++||   ++.++. ..+.+.+.||.+........... +.. +    ||++|++++..++..+++.+++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-SSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeec-CcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            68998 9999999   666655 66788889998877665555555 433 2    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC-CCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC-REVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~-r~Vs~~e~~~~a~~~~  177 (179)
                      +|||++++.||+.+..|++++.+......  .+..|++|||||+|+.++ +.++.++++++|++.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~  144 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNS--PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG  144 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSC--TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcc--cccCcEEEEecccchhhhhcchhHHHHHHHHHHcC
Confidence            99999999999999999999987654321  112688999999999765 4588999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=154.67  Aligned_cols=127  Identities=16%  Similarity=0.118  Sum_probs=104.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      ..+||+ +|++|||   ++.++. +.|.+.+.||++. ...+.+..+ +..+    ||++|++.|..++..|++++++++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEET-TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeecc-CcceEEEeecccccccchhhhhhcccccceee
Confidence            479998 9999999   555555 7788999999984 445667777 7666    999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036        113 LIFDVTNENSFKDVEK-WLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS  177 (179)
Q Consensus       113 lvyDit~~~Sf~~l~~-w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~  177 (179)
                      +|||+++++||+++.. |...++.... +      .|++|||||+|+.++            +.++..++..+|++..
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~-~------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  152 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCP-N------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  152 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-T------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCC-C------CcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcC
Confidence            9999999999999975 5555555443 3      689999999998543            4577889999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-23  Score=151.33  Aligned_cols=127  Identities=22%  Similarity=0.397  Sum_probs=106.8

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+++||   ++.++. ..+.+.+.||++.++..+.+.++ +..+    |||+|+++|..+++.++++++++++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            68998 9999999   666555 66788899999999998999998 8876    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      |||+++++||++++.|+..+.......      .|++++++|.|+.. +.+..++++++|++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~  137 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDE------AQLLLVGNKSDMET-RVVTADQGEALAKELG  137 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCTT-CCSCHHHHHHHHHHHT
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCc------ceeeeecchhhhhh-hhhhHHHHHHHHHhcC
Confidence            999999999999999999888877665      68888999999864 7899999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.9e-22  Score=148.84  Aligned_cols=130  Identities=23%  Similarity=0.264  Sum_probs=110.8

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      ++||+ +|+++||   ++.++. +.+...+.||++.+...+..... +..+    ||++|++.+...++.+++.++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   80 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   80 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeC-CceEEEEeeecCCcccccccccccccCccEEEE
Confidence            68998 9999999   665555 67889999999998888888888 7776    9999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~  176 (179)
                      |||+++++||+++..|++++++......  .+..|++|||||+||.+ +.+..+++.+++.++
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~  140 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRD--PENFPFVVLGNKIDLEN-RQVATKRAQAWCYSK  140 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSS--GGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHT
T ss_pred             eecccchhhhhcchhhHHHHHHHhcccc--ccCCCEEEEEEeecccc-cchhHHHHHHHHHHh
Confidence            9999999999999999999987654311  11268899999999965 778888888887655

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=148.06  Aligned_cols=130  Identities=22%  Similarity=0.367  Sum_probs=112.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF  111 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v  111 (179)
                      -.++||+ +|+++||   +++++. +.+.+.+.++.+..+..+.+.++ +..+    ||++|++++..+++.++++++++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-GNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEe-ccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            3479998 9999999   666655 67788889998888888888887 7765    99999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036        112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS  177 (179)
Q Consensus       112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~  177 (179)
                      ++|||+++++||+.+..|+.++.+.....     .+|+++++||.|+. +++|+.+++++++++..
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~  143 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRN-----DIVNMLVGNKIDKE-NREVDRNEGLKFARKHS  143 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCS-----CCEEEEEEECTTSS-SCCSCHHHHHHHHHHTT
T ss_pred             EEEEECCCccccccchhhhhhhccccccc-----ceeeEEEeeccccc-cccccHHHHHHHHHHCC
Confidence            99999999999999999999987765442     26888999999975 48999999999999875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.3e-22  Score=147.54  Aligned_cols=123  Identities=14%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL  113 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil  113 (179)
                      .+||+ +|+.+||   ++.++. ..+ +.+.+|.+..+ .+.+.++ +..+    ||++|++++     .|++++|++|+
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~t~~~~~-~~~i~v~-~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVD-GQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCC-CCCCCSSCEEE-EEEEEET-TEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CCcCCccceeE-EEEeecC-ceEEEEEEeeccccccc-----ccccccceeEE
Confidence            59998 9999999   555555 444 45667777555 5778888 8776    999999865     48999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc--CCCCCCCHHHHHHHHhhh
Q psy15036        114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL--QRCREVVTPDQIMFGSTQ  176 (179)
Q Consensus       114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl--~~~r~Vs~~e~~~~a~~~  176 (179)
                      |||+++++||+++..|++++.......   .+.+|++|||||.|+  .++|.|+.+++++++.+.
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~---~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~  138 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEG---RGGLALALVGTQDRISASSPRVVGDARARALCADM  138 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTS
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcc---cCCccEEEEeeecCcchhhhcchhHHHHHHHHHHh
Confidence            999999999999999999997764332   122688899988777  457889999999997553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=131.68  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||+ +|+++||   ++.++. ..+.+.+.||+|.++  +.+..+ +..+  ||++|++.+...+..++++++++++||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKG-NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEET-TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeee-eEEEEEeeccccccccccccccccccchhhccc
Confidence            47998 9999999   666555 667788999999765  356667 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |++++++|+++..|+..+.+... .+      .|++|||||.|+.+
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~------~pi~lv~nK~Dl~~  118 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQLQG------IPVLVLGNKRDLPG  118 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTT------CCEEEEEECTTSTT
T ss_pred             ccccccccchhhhhhhhhhhhhcccC------CcEEEEEeccccch
Confidence            99999999999988887765432 22      68999999999965

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.80  E-value=1.6e-19  Score=131.20  Aligned_cols=113  Identities=15%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      .+||+ +|++|||   +++++.......+.||++...  ..+..+ +..+  ||++|+++++...+.+++.++++++|||
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   78 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR-GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   78 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET-TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeee--eecccc-ccceeeeecCcchhhhhHHHhhhhhhhcceeeee
Confidence            58998 9999999   777777666677889998554  455666 6566  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHH-HhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036        117 VTNENSFKDVEKWLLQIKV-MDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~-~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      ++++.+|..+..|+..... ....+      .|+++||||+|+.+.+.+
T Consensus        79 ~~d~~~~~~~~~~~~~~~~~~~~~~------~p~iiv~nK~Dl~~~~~~  121 (165)
T d1ksha_          79 SADRQRMQDCQRELQSLLVEERLAG------ATLLIFANKQDLPGALSC  121 (165)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTCCCH
T ss_pred             cccchhHHHHHHhhhhhhhhcccCC------CceEEEEeccccccccCH
Confidence            9999999999766665543 33333      689999999999764443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.79  E-value=1.6e-19  Score=133.44  Aligned_cols=117  Identities=13%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+++||   +++++.........||.+....  .+..+ +..+  ||++|+++++.+++.++++++++++||
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~   92 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK-NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV   92 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET-TEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE--EEeeC-CEEEEEEecccccccchhHHhhhccceeEEEEe
Confidence            479998 9999999   6666664444566788876543  44556 6666  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHH
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQ  169 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~  169 (179)
                      |++++.+|.++..|+..+.+.. ..+      +|+++||||+|+.+  .++.++.
T Consensus        93 d~~d~~s~~~~~~~l~~~~~~~~~~~------~piliv~NK~Dl~~--~~~~~~i  139 (182)
T d1moza_          93 DSTDKDRMSTASKELHLMLQEEELQD------AALLVFANKQDQPG--ALSASEV  139 (182)
T ss_dssp             ETTCTTTHHHHHHHHHHHTTSSTTSS------CEEEEEEECTTSTT--CCCHHHH
T ss_pred             eecccccchhHHHHHHHHHHhhccCC------cceEEEEEeecccc--ccCHHHH
Confidence            9999999999998887765433 223      78999999999965  4444443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.78  E-value=9.2e-19  Score=128.27  Aligned_cols=113  Identities=15%  Similarity=0.112  Sum_probs=89.4

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      +..+||+ +|+++||   +++++.........++.|.+  .+.+... +..+  ||++|+++++..++.+++.++++|+|
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~--~~~i~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ-GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET-TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeee--EEEeccC-CeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            3568998 9999999   66666644334556677644  3566666 6666  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ||++++.||.++..|+.++.......     ..|++|||||+|+.+.
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~-----~~pillv~nK~Dl~~~  132 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLS-----CVPVLIFANKQDLLTA  132 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGT-----TCCEEEEEECTTSTTC
T ss_pred             eccccccchhhhhhhhhhhhhhhccC-----CCeEEEEEEecccccc
Confidence            99999999999988887776443221     1689999999999763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.76  E-value=2.1e-18  Score=126.42  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=87.2

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+++||   +++++.........+|.+..+.  ..... ...+  ||++|++.++..+..+++.++++++||
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~   87 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   87 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEE--EEEET-TEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEE--Eeecc-ceeeEEecCCCcchhhhHHHhhhcccceEEEEE
Confidence            468998 9999999   7777764444556677775543  33444 4444  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |++++++|.++..|+....+.. ...      .|+++||||+|+.+
T Consensus        88 D~s~~~~~~~~~~~l~~~~~~~~~~~------~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          88 DCADRDRIDEARQELHRIINDREMRD------AIILIFANKQDLPD  127 (173)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTSGGGTT------CEEEEEEECTTSTT
T ss_pred             ecccchhHHHHHHHHHHHhhhccccc------ceeeeeeecccccc
Confidence            9999999999988887766532 233      78999999999965

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=5.8e-18  Score=125.54  Aligned_cols=111  Identities=9%  Similarity=-0.012  Sum_probs=89.4

Q ss_pred             eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      .+||| ||+.|||   +++++. +.+  .+.||+|.++.  .+... +..+  ||++|+++++..+..+|+.++++++||
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~--~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   76 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY--PFDLQ-SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV   76 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE--EEECS-SCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE--EEecc-ceeeeeccccccccccccccccccccceeeEee
Confidence            58998 9999999   666665 444  47899997764  45556 6666  999999999999999999999999999


Q ss_pred             eCCChh-----------hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036        116 DVTNEN-----------SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV  164 (179)
Q Consensus       116 Dit~~~-----------Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V  164 (179)
                      |.++.+           +++.+..|...+......+      .|++++|||.|+.+.+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~------~~~~~v~NK~Dl~~~~~~  130 (200)
T d2bcjq2          77 ALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN------SSVILFLNKKDLLEEKIM  130 (200)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS------SEEEEEEECHHHHHHHTT
T ss_pred             eccchhhhhhhhccccchHHHHHHHHHHHhhhhccC------ccEEEecchhhhhhhccc
Confidence            988864           5677888988887766555      789999999998654433

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.9e-18  Score=124.35  Aligned_cols=105  Identities=11%  Similarity=0.055  Sum_probs=77.6

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      .+||| ||++|||   +++++..    ...||+|..  ...+... +..+  ||++||++|+.+++.||++++++++|||
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~----~~~~t~~~~--~~~~~~~-~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d   74 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKI----IHEAGTGIV--ETHFTFK-DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVA   74 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----HHSCCCSEE--EEEEEET-TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh----CCCCCccEE--EEEEEee-eeeeeeeccccccccccchhhcccCCceeeeEEe
Confidence            58998 9999999   6555542    223555532  2345555 5555  9999999999999999999999999999


Q ss_pred             CCChhhHH-----------HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSFK-----------DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf~-----------~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +++.++|.           .+..|...+.......      .|++++|||.|+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~------~~~~lv~Nk~d~~~  123 (195)
T d1svsa1          75 LSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD------TSIILFLNKKDLFE  123 (195)
T ss_dssp             GGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT------SEEEEEEECHHHHH
T ss_pred             ecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC------CCEEEEeccchhhh
Confidence            99999873           3345555554443343      68999999999743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5.2e-17  Score=120.70  Aligned_cols=107  Identities=9%  Similarity=-0.053  Sum_probs=75.2

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      ++||| ||++|||   ++.++.  +...+.||+|+..  ..+.+. +..+  ||++|++.++..+..+++++++++++||
T Consensus         2 ~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~--~~~~~~-~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~   76 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHE--YDFEIK-NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS   76 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEE--EEEEET-TEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEE--EEEeee-eeeeeeecccceeeecccccccccccceeEEEEE
Confidence            68998 9999999   666653  5577899999654  456666 6666  9999999999999999999999999999


Q ss_pred             CCChhhH----------HHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSF----------KDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf----------~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .++..+|          +....|+..+... ...+      +|++|+|||+|+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~piilv~NK~Dl~~  125 (200)
T d1zcba2          77 SSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN------VSIILFLNKTDLLE  125 (200)
T ss_dssp             TTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT------SEEEEEEECHHHHH
T ss_pred             cCCcceeeeecccchhhhHHHHHHHHHhhChhhcC------ceEEEEeccchhhh
Confidence            9987554          4444444444322 2222      79999999999854

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=5.9e-17  Score=123.56  Aligned_cols=112  Identities=9%  Similarity=-0.046  Sum_probs=82.9

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEE
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFL  112 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vi  112 (179)
                      -|.+++||| ||++|||   +++++.   ...+.||+|+..  ..+.++ +..+  ||++||++++..+..+++++++++
T Consensus         2 ~~k~~~KilllG~~~vGKTsll~~~~---~~~~~pTiG~~~--~~~~~~-~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           2 VYRATHRLLLLGAGESGKSTIVKQMR---ILHVVLTSGIFE--TKFQVD-KVNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHHHSEEEEEECSTTSSHHHHHHHHH---HHHCCCCCSCEE--EEEEET-TEEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             cchhcCEEEEECCCCCCHHHHHHHHh---cCCcCCCCCeEE--EEEEEC-cEEEEEEecCccceeccchhhhcccccceE
Confidence            356789998 9999999   665554   234579999654  567777 7777  999999999999999999999999


Q ss_pred             EEEeCCChhh-----------HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        113 LIFDVTNENS-----------FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       113 lvyDit~~~S-----------f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      +|+|+++.++           .+.+..|...+......+      .|++|+|||+||.+++
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~------~~iil~~NK~Dl~~~k  130 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT------ISVILFLNKQDLLAEK  130 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSS------CEEEEEEECHHHHHHH
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCC------CcEEEEechhhhhhhh
Confidence            9999987543           222233333333322233      7999999999996543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.58  E-value=1.3e-14  Score=103.37  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=81.7

Q ss_pred             eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036         44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD  116 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD  116 (179)
                      +||+ +|+++||   +++++. +.+...+..+..   ........ ...+  ||++|++.+......+++.+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC---CEEEEECS-SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee---EEEEEeee-eEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            5897 9999999   666665 444443333322   12233334 4444  9999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ++++.+|..+..|+.++.......     .+|+++++||.|+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~v~~k~d~~~  115 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELR-----DAVLLVFANKQDLPN  115 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGT-----TCEEEEEEECTTSTT
T ss_pred             ecChHHHHHHHHHHHHHHHhhccc-----CceEEEEeecccccc
Confidence            999999999998888877544322     278999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5e-14  Score=105.34  Aligned_cols=112  Identities=10%  Similarity=0.040  Sum_probs=76.8

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCC--Cee--eeCCCchhch-hhhhhhhcCCcEEEEEE
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIG--PRY--FRFPLVSRFL-SLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~--~~i--wDt~G~e~~~-~~~~~~~~~~~~vilvy  115 (179)
                      +|+ +|+++||   ++.++.........||++.++..  +.+.++  ..+  ||++|+++++ .....+++.++++++||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEE--EEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            476 9999999   66776644334445777766543  333312  233  9999999986 46688889999999999


Q ss_pred             eCCChhhH-HHHHHHHHHHHH-HhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        116 DVTNENSF-KDVEKWLLQIKV-MDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       116 Dit~~~Sf-~~l~~w~~~i~~-~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      |.++..++ .....|+..+.. .....    ..+|+++|+||+|+...+
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~----~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALK----NSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTST----TCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhh----cCCcEEEEEECcccCCCC
Confidence            99998774 455555555432 22111    127899999999997633

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=100.17  Aligned_cols=111  Identities=10%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|++|||   ++.++.........++.+..  .+..... +..+  ||+++++..+.....+++.++++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~   90 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV   90 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS--CEEEEET-TEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcccccccee--EEEEeec-ceEEEEeccccccccccchhhhhccceeeeeec
Confidence            358998 9999999   66666643333344555432  3445555 5555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |.++.++|+....+...........     .+|+++||||+|+..
T Consensus        91 d~~d~~~~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~  130 (177)
T d1zj6a1          91 DSTDRERISVTREELYKMLAHEDLR-----KAGLLIFANKQDVKE  130 (177)
T ss_dssp             ETTCTTTHHHHHHHHHHHHTSGGGT-----TCEEEEEEECTTSTT
T ss_pred             ccccccchhhhhhhhhhhhhccccc-----ceEEEEEEEcccccc
Confidence            9999999999877766665433221     278999999999965

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7.6e-13  Score=93.80  Aligned_cols=115  Identities=14%  Similarity=0.053  Sum_probs=89.7

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT  118 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit  118 (179)
                      ||+ +|+++||   ++.++.......+.||++...  ..+... +...  ||+.|...+....+.+++.+++++++||.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIG-NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA   78 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEECCT-TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeE--EEeccC-CeeEEEEeeccchhhhhhHhhhhhheeeeeeecccc
Confidence            787 9999999   777777555567788887544  344455 4444  999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHH
Q psy15036        119 NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ  169 (179)
Q Consensus       119 ~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~  169 (179)
                      ++.++..+..|.....+.....     ..|+++++||.|+..  .++..+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~i~~~k~d~~~--~~~~~~i  122 (166)
T d2qtvb1          79 DPERFDEARVELDALFNIAELK-----DVPFVILGNKIDAPN--AVSEAEL  122 (166)
T ss_dssp             CGGGHHHHHHHHHHHHTCTTTT-----TCCEEEEEECTTSSS--CCCHHHH
T ss_pred             chhhhhhhhHHHHhhhhhhccC-----CceEEEEeccccccc--cCCHHHH
Confidence            9999999988877776544332     268889999999965  4444444

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.37  E-value=4e-12  Score=90.60  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=84.3

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF  115 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy  115 (179)
                      ..+||+ +|+++||   +++++.........+|.+...  .....+ +..+  ||.+|.+.+......++...+++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK-NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET-TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceee--eeeccC-ceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            358998 9999999   777776443344566766443  334445 5555  999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036        116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |+++..++.....|.....+.. ...      +|+++|+||.|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~iv~nk~Dl~~  120 (169)
T d1upta_          81 DSCDRDRIGISKSELVAMLEEEELRK------AILVVFANKQDMEQ  120 (169)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTT
T ss_pred             hhhhcchhhhccchhhhhhhhhcccc------ceEEEEEeeccccc
Confidence            9999999999977655554432 232      68889999999976

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=2.6e-12  Score=93.64  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=68.5

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCchhch--------hhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL--------SLTTG  103 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~--------~~~~~  103 (179)
                      +.-+|+ +|..+||   +++++.+...    .....|..  ......... +..+  |||+|.....        .....
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~--~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK--RLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS--CEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccc--cccceeeee-eeeeeecccccccccccccchhccccccc
Confidence            455686 9999999   6666653321    11222322  223344555 6666  9999985442        23344


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +++++|++++|+|.+++.+... ..|.+.+++....       .|+++|+||+|+.+
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~-------~piilv~NK~Dl~~  129 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLVGK-------VPILLVGNKLDAAK  129 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTT-------SCEEEEEECGGGCS
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheeccccc-------hhhhhhhccccccc
Confidence            5788999999999987655433 4455555544433       57889999999965

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.29  E-value=1.2e-11  Score=89.37  Aligned_cols=121  Identities=14%  Similarity=0.048  Sum_probs=83.6

Q ss_pred             ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036         41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI  114 (179)
Q Consensus        41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv  114 (179)
                      ....||+ +|++|||   ++.++.........||.+...  ..+.++ +..+  ||+.++..+......+++..++++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIA-GMTFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEET-TEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccce--eEEEec-ccccccccccchhhhhhHHhhhhcccceeeee
Confidence            3468998 9999999   777776544444556666444  355666 6666  99999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036        115 FDVTNENSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF  172 (179)
Q Consensus       115 yDit~~~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~  172 (179)
                      +|++++.++.....+....... ...+      .|+++++||.|+..  .++.++..+.
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~------~~~li~~~K~D~~~--~~~~~~i~~~  138 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIAN------VPILILGNKIDRPE--AISEERLREM  138 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTT------SCEEEEEECTTSTT--CCCHHHHHHH
T ss_pred             eeccCccchHHHHHHHHHhhcccccCC------CceEEEEeccCccc--cCCHHHHHHH
Confidence            9999999999987655554432 2222      68889999999865  5555554443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3.3e-12  Score=91.19  Aligned_cols=110  Identities=12%  Similarity=-0.011  Sum_probs=75.8

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCC--cccCcceeeeeEEEEEecCCCee--eeCCCchhch--------hhhhhhhcC
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTG--THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL--------SLTTGLYRG  107 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~--------~~~~~~~~~  107 (179)
                      +||+ +|.++||   +++.+.+....  ...|....+.....+... +..+  ||++|.....        .....+++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-GMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc-CceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            6897 9999999   66666533221  122222222223445566 6666  9999864432        234456889


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ++++++++|.++..+++....|.+.+......       .|++||+||+||..+
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK-------LPITVVRNKADITGE  127 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT-------CCEEEEEECHHHHCC
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcccc-------cceeeccchhhhhhh
Confidence            99999999999999999888887777665544       578899999998553

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.8e-11  Score=90.65  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=75.6

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhc----CCcEE
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYR----GTMGF  111 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~----~~~~v  111 (179)
                      |.-.|+ +|.++||   ++.++.+.   +..++.........+..+ +..+  ||++|+++++.....++.    .++.+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~---~~~~~tt~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTD---SVRPTVVSQEPLSAADYD-GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS---SCCCBCCCSSCEEETTGG-GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC---CCCCeEEecceEEEEEeC-CeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            445676 9999999   66666642   234454444444555566 6666  999999988776665554    44788


Q ss_pred             EEEEeCC-ChhhHHHHHHHHHHHH----HHhCCccCccccceEEEEeeCCCcCCC
Q psy15036        112 LLIFDVT-NENSFKDVEKWLLQIK----VMDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       112 ilvyDit-~~~Sf~~l~~w~~~i~----~~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      ++++|.. ...+++.+..|+.++.    .....+      +|+++|+||+|+.+.
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENG------IDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC------CCEEEEEECTTSTTC
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc------CCeEEEEEeeccccc
Confidence            8888755 5778888877776543    333333      689999999999663

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=4.2e-08  Score=70.87  Aligned_cols=123  Identities=11%  Similarity=-0.046  Sum_probs=69.9

Q ss_pred             CceeeEEE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCchhc------------h
Q psy15036         40 FSFNFGTQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF------------L   98 (179)
Q Consensus        40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~------------~   98 (179)
                      .+-.+||. +|..+||   ++..+.+...   ..+..|.. ......+.++ +..+  +|++|....            .
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR-DPVDDEVFID-GRKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEET-TEEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeeccccccc-ccceeeeccC-CceeeeeccCCccccccccccccccchh
Confidence            33468997 9999999   6555543211   22222211 1112345556 6666  788876432            2


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036         99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS  174 (179)
Q Consensus        99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~  174 (179)
                      .....+.+.+|++++|+|...... .....++..+.+.   +      .|+|+|+||+|+..+++...++..+..+
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~---~------~~~i~v~nK~D~~~~~~~~~~~~~~~~~  148 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR---G------RASVVVFNKWDLVVHREKRYDEFTKLFR  148 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT---T------CEEEEEEECGGGSTTGGGCHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc---C------CceeeeccchhhhcchhhhhhhHHHHHH
Confidence            233445678999999999875433 2224444444432   2      5788999999997655555555554443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=2.3e-08  Score=71.60  Aligned_cols=103  Identities=16%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             EEE-EeCCCCc---eeEeeeccCCCc----ccCcceeeeeEEEEEecCCCee--eeCCCchh---------chhhhhhhh
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLGTGT----HGKTVGIVFPAISVTYSIGPRY--FRFPLVSR---------FLSLTTGLY  105 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~~~~----~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~---------~~~~~~~~~  105 (179)
                      .|+ +|..+||   +++.+.+.....    ...|..  .....+... +..+  ||++|...         +......++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRD--PVQDTVEWY-GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------C--CSEEEEEET-TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeec--ccccccccc-ccccccccccceeeeecccccccccccccccc
Confidence            465 9999999   666665432221    122222  122344445 5555  89988421         223334457


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..+|+++++.|.+...+... ..|+..++...         .|+++|+||+|+.+
T Consensus        79 ~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~~---------~pviiv~NK~Dl~~  123 (171)
T d1mkya1          79 READLVLFVVDGKRGITKED-ESLADFLRKST---------VDTILVANKAENLR  123 (171)
T ss_dssp             TTCSEEEEEEETTTCCCHHH-HHHHHHHHHHT---------CCEEEEEESCCSHH
T ss_pred             ccCcEEEEeecccccccccc-ccccccccccc---------ccccccchhhhhhh
Confidence            78999999999776544433 45555555432         46788999999864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=2.1e-08  Score=70.74  Aligned_cols=104  Identities=11%  Similarity=-0.042  Sum_probs=63.1

Q ss_pred             eEEE-EeCCCCc---eeEeeeccCCC--cccCcceeeeeEEEEEecCCCee--eeCCCchh--------ch-hhhhhhhc
Q psy15036         44 FGTQ-LGRRGIP---LLKHLKYLGTG--THGKTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FL-SLTTGLYR  106 (179)
Q Consensus        44 ~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~-~~~~~~~~  106 (179)
                      +||+ +|.++||   +++.+.+....  ...+..........+... +..+  |||+|...        +. ......++
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-GILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET-TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC-CeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            5897 9999999   66666533211  111111111223445566 6666  99998421        11 11223467


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .+|++++|+|.+++.+.+...-+     .....       .+++++.||.|+.+
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~-----~~~~~-------~~~i~~~~k~d~~~  121 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKIL-----ERIKN-------KRYLVVINKVDVVE  121 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHH-----HHHTT-------SSEEEEEEECSSCC
T ss_pred             hCCEEEEEEeCCCCcchhhhhhh-----hhccc-------ccceeeeeeccccc
Confidence            89999999999998776654333     22223       46778899999976

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=2.7e-08  Score=71.63  Aligned_cols=102  Identities=12%  Similarity=0.071  Sum_probs=57.0

Q ss_pred             EEE-EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCCCeeeeCCCch-----------hc----hhhhh
Q psy15036         45 GTQ-LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIGPRYFRFPLVS-----------RF----LSLTT  102 (179)
Q Consensus        45 Kiv-lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~~~iwDt~G~e-----------~~----~~~~~  102 (179)
                      .|+ +|.++||   +++.+.+..  .+.+ ..|..    ...+... +..+|||+|..           ++    .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~----~~~~~~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK----IIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS----CEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec----ccccccc-cceecccCCceeccccccccccccchhhhhhhh
Confidence            366 9999999   555554321  1111 12433    2233444 44459999941           11    12233


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHH----------HHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        103 GLYRGTMGFLLIFDVTNENSFKDVEK----------WLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       103 ~~~~~~~~vilvyDit~~~Sf~~l~~----------w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ..++.+|++++|+|.+.+........          .++.+.+   .+      .|+++|+||+|+.+
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~------~p~iiv~NK~D~~~  135 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LD------IPTIVAVNKLDKIK  135 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TT------CCEEEEEECGGGCS
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cC------CCEEEEEeeeehhh
Confidence            45678999999999876544333211          1222222   22      47888999999754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=1.2e-07  Score=68.23  Aligned_cols=106  Identities=12%  Similarity=-0.014  Sum_probs=58.5

Q ss_pred             EE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCchhc----h---hhhhhhhcCCc
Q psy15036         46 TQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----L---SLTTGLYRGTM  109 (179)
Q Consensus        46 iv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----~---~~~~~~~~~~~  109 (179)
                      |. +|.++||   +++.+++...   .....|...... ...... +..+  |||+|..+.    .   ...-..+..++
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecC-CCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            54 9999999   6656653221   111122222221 112223 5555  999995321    1   12224567899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHH---HhCCccCccccceEEEEeeCCCcCCC
Q psy15036        110 GFLLIFDVTNENSFKDVEKWLLQIKV---MDGALFTHFELQIVFMRGCLELLQRC  161 (179)
Q Consensus       110 ~vilvyDit~~~Sf~~l~~w~~~i~~---~~~~~~~~~~~~~iilvGnK~Dl~~~  161 (179)
                      .+++++|.... .+..+..|...+..   ....       .|+++|+||+|+.++
T Consensus        82 ~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~-------~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          82 VLLYVLDAADE-PLKTLETLRKEVGAYDPALLR-------RPSLVALNKVDLLEE  128 (180)
T ss_dssp             EEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHH-------SCEEEEEECCTTSCH
T ss_pred             hhhhhcccccc-cccchhhhhhhhhccccccch-------hhhhhhhhhhhhhhH
Confidence            99999997653 33444444444332   2222       478889999999653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.10  E-value=2.7e-06  Score=61.14  Aligned_cols=107  Identities=12%  Similarity=-0.006  Sum_probs=63.1

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCCccc---C---ccee--eeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHG---K---TVGI--VFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGT  108 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~---~---Ti~~--~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~  108 (179)
                      .++|- +|..++|   ++..+.........   +   ..|.  ......+..+ +..+  +|++|+..|.......+..+
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE-NYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET-TEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccC-Cccccccccccccccccchhhhhhhc
Confidence            56784 9999999   55555422111100   0   1111  1111222334 4444  99999999998888899999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      |++++|+|.++....+....| ..+..   .+      .|+++|.||.|+.+
T Consensus        84 d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~------~p~iiv~NKiD~~~  125 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTGEHM-LILDH---FN------IPIIVVITKSDNAG  125 (179)
T ss_dssp             CEEEEEEETTTCSCHHHHHHH-HHHHH---TT------CCBCEEEECTTSSC
T ss_pred             cccccccccccccchhhhhhh-hhhhh---cC------CcceeccccccccC
Confidence            999999999875433322222 22222   12      46778889999865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=1.4e-06  Score=62.64  Aligned_cols=111  Identities=13%  Similarity=0.013  Sum_probs=56.4

Q ss_pred             EE-EEeCCCCc---eeEeeeccC--CC-cccCcceeeeeEEEEEecCCCee--eeCCCchhch----hhhh---hhhcCC
Q psy15036         45 GT-QLGRRGIP---LLKHLKYLG--TG-THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----SLTT---GLYRGT  108 (179)
Q Consensus        45 Ki-vlG~~gvG---~~~~~~~~~--~~-~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----~~~~---~~~~~~  108 (179)
                      .| ++|.++||   +++.+.+..  .. ....|.....  ....+.++..+  |||+|..+..    .+..   ..+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~--~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeee--ceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36 49999999   555544221  11 1222333222  23344425555  9999963321    1212   234567


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHH--HHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        109 MGFLLIFDVTNENSFKDVEKWLL--QIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       109 ~~vilvyDit~~~Sf~~l~~w~~--~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      +.++.+.+....+.......+..  ..........  .+ .|+++|+||+|+.+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-kp~ivv~NK~Dl~~  131 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL--TE-RPQIIVANKMDMPE  131 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST--TT-SCBCBEEECTTSTT
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhc--cC-CcchhhccccchHh
Confidence            88888887666544333322222  2222221110  01 36778899999965

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.97  E-value=1.4e-05  Score=58.89  Aligned_cols=73  Identities=8%  Similarity=0.027  Sum_probs=51.7

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  .||+|+..|..-...-.+.+|++|||.|..+--..+..+.| ..+.... -       ++++++-||
T Consensus        60 ~~~~~~-~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~g-i-------~~iiv~iNK  129 (204)
T d2c78a3          60 VEYETA-KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQVG-V-------PYIVVFMNK  129 (204)
T ss_dssp             EEEECS-SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHTT-C-------CCEEEEEEC
T ss_pred             EEEEeC-CeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHcC-C-------CeEEEEEEe
Confidence            355667 7777  99999999987777778899999999999775444443444 3333322 1       356666899


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      .|+.+
T Consensus       130 ~D~~~  134 (204)
T d2c78a3         130 VDMVD  134 (204)
T ss_dssp             GGGCC
T ss_pred             cccCC
Confidence            99854

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.78  E-value=2.7e-05  Score=57.91  Aligned_cols=68  Identities=12%  Similarity=-0.058  Sum_probs=46.7

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      +..+  .||+|++.|.......+..+|++|+|+|..+--.-.. ..-+..+...   +      .|+|+|.||+|+....
T Consensus        69 ~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~------~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY---R------TPFVVAANKIDRIHGW  138 (227)
T ss_dssp             CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---T------CCEEEEEECGGGSTTC
T ss_pred             ccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhcC---C------CeEEEEEECccCCCch
Confidence            4445  8999999998887778899999999999876322222 2222233322   2      4677888999996533

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=2.3e-05  Score=56.49  Aligned_cols=47  Identities=13%  Similarity=-0.084  Sum_probs=30.1

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .+..+++++++.|.++.-.- .-..+++.++..   .      .|+++|+||+|+..
T Consensus       102 ~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~------~piivv~NK~D~~~  148 (195)
T d1svia_         102 TREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---G------IPVIVIATKADKIP  148 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---T------CCEEEEEECGGGSC
T ss_pred             cccchhhhhhhhhccccccc-cccccccccccc---c------CcceechhhccccC
Confidence            44567999999998754221 113444444432   2      47889999999854

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.75  E-value=5.7e-05  Score=55.13  Aligned_cols=72  Identities=10%  Similarity=0.054  Sum_probs=48.5

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+... +..+  .|++|+..|......-.+.+|++++|.|..+-- +....+.+..+.....        +++|++-||.
T Consensus        60 ~~~~~-~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~~~--------~~iIv~iNK~  129 (196)
T d1d2ea3          60 EYSTA-ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQIGV--------EHVVVYVNKA  129 (196)
T ss_dssp             EEECS-SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHTTC--------CCEEEEEECG
T ss_pred             EEEec-eeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHhcC--------CcEEEEEecc
Confidence            33444 5555  999999999776666778999999999987631 1222333333333332        3677888999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+..
T Consensus       130 D~~~  133 (196)
T d1d2ea3         130 DAVQ  133 (196)
T ss_dssp             GGCS
T ss_pred             cccc
Confidence            9854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.72  E-value=0.00012  Score=55.42  Aligned_cols=120  Identities=8%  Similarity=-0.090  Sum_probs=65.8

Q ss_pred             eeeEEE-EeCCCCc---eeEeeecc--C--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhch-------hhhhh-
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYL--G--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SLTTG-  103 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~--~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~~~~-  103 (179)
                      ..++|+ +|..|+|   ++..+.+.  +  ......|...  ......++ +..+  +||+|-....       ..... 
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~--~~~~~~~~-g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP--VMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC--EEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeE--EEEEEEec-cEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            468897 9999999   44444322  1  1112223222  22345567 7777  9999953221       11111 


Q ss_pred             -hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036        104 -LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD  168 (179)
Q Consensus       104 -~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e  168 (179)
                       .....+++++|.+++...--..-...+..+.+..+..+.    .++++|-||+|+......+.++
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~----~~~ivv~t~~D~~~~~~~~~e~  169 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW----NKAIVALTHAQFSPPDGLPYDE  169 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGG----GGEEEEEECCSCCCGGGCCHHH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhh----hCEEEEEECcccCCcCCCcHHH
Confidence             223578888888876542112223444455554444311    3567889999997666666543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.38  E-value=0.00013  Score=55.80  Aligned_cols=71  Identities=10%  Similarity=0.051  Sum_probs=52.4

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  +||+|+..|..-...-.+-+|++|+|.|..+--.-.....|. .+++.   +      .|.+++.||
T Consensus        60 ~~~~~~-~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~------~p~~i~iNk  128 (267)
T d2dy1a2          60 APLLFR-GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---G------LPRMVVVTK  128 (267)
T ss_dssp             EEEEET-TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---T------CCEEEEEEC
T ss_pred             cccccc-ccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---c------ccccccccc
Confidence            355667 7777  999999999988888899999999999988765555445553 23322   2      466677899


Q ss_pred             CCcC
Q psy15036        156 ELLQ  159 (179)
Q Consensus       156 ~Dl~  159 (179)
                      .|..
T Consensus       129 ~D~~  132 (267)
T d2dy1a2         129 LDKG  132 (267)
T ss_dssp             GGGC
T ss_pred             cccc
Confidence            9963

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.34  E-value=0.00076  Score=49.87  Aligned_cols=72  Identities=7%  Similarity=-0.052  Sum_probs=46.8

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      .+... +..+  .|++|++.|......-...+|++|+|.|...--.=+....| . +....+-       +.+|++-||.
T Consensus        83 ~~~~~-~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~-~~~~~gv-------~~iiv~vNK~  152 (222)
T d1zunb3          83 YFSTA-KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-Y-IASLLGI-------KHIVVAINKM  152 (222)
T ss_dssp             EEECS-SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-H-HHHHTTC-------CEEEEEEECT
T ss_pred             EEecc-ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-H-HHHHcCC-------CEEEEEEEcc
Confidence            33444 5555  89999999987776678899999999998763221211122 1 2222222       3577788999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+.+
T Consensus       153 D~~~  156 (222)
T d1zunb3         153 DLNG  156 (222)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            9965

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.00095  Score=51.03  Aligned_cols=72  Identities=13%  Similarity=0.027  Sum_probs=53.9

Q ss_pred             EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036         78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL  155 (179)
Q Consensus        78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK  155 (179)
                      ..+..+ +..+  .||+|+..|..-...-++-+|++|+|.|..+--.-.-..-| +..++.   +      .|.+++.||
T Consensus        64 ~~~~~~-~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~---~------lP~i~fINK  132 (276)
T d2bv3a2          64 TTCFWK-DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY---K------VPRIAFANK  132 (276)
T ss_dssp             EEEEET-TEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT---T------CCEEEEEEC
T ss_pred             eeeccC-CeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc---C------CCEEEEEec
Confidence            456667 7777  99999999998888889999999999998876444444555 222322   2      577778899


Q ss_pred             CCcCC
Q psy15036        156 ELLQR  160 (179)
Q Consensus       156 ~Dl~~  160 (179)
                      .|.++
T Consensus       133 mDr~~  137 (276)
T d2bv3a2         133 MDKTG  137 (276)
T ss_dssp             TTSTT
T ss_pred             ccccc
Confidence            99764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00026  Score=56.91  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=54.8

Q ss_pred             eeEEE-EeCCCCc---eeEeeeccCCC--cccCc--ceeeeeEEEEEecCCCee--eeCCCchhchh-----hhhhhhcC
Q psy15036         43 NFGTQ-LGRRGIP---LLKHLKYLGTG--THGKT--VGIVFPAISVTYSIGPRY--FRFPLVSRFLS-----LTTGLYRG  107 (179)
Q Consensus        43 ~~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~T--i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-----~~~~~~~~  107 (179)
                      .++|. +|..|||   +++.+.+....  ...++  .+.+-....+....+..+  |||+|-.....     +...-+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~  135 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  135 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhhc
Confidence            58896 9999999   66666543221  11111  111111122333313334  99999754432     22233557


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036        108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL  158 (179)
Q Consensus       108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl  158 (179)
                      +|.++++.|..-.+.  . ...++.+++.   +      -|+++|.||+|.
T Consensus       136 ~d~~l~~~~~~~~~~--d-~~l~~~l~~~---~------k~~~~V~nK~D~  174 (400)
T d1tq4a_         136 YDFFIIISATRFKKN--D-IDIAKAISMM---K------KEFYFVRTKVDS  174 (400)
T ss_dssp             CSEEEEEESSCCCHH--H-HHHHHHHHHT---T------CEEEEEECCHHH
T ss_pred             ceEEEEecCCCCCHH--H-HHHHHHHHHc---C------CCEEEEEeCccc
Confidence            888888776432221  1 2333444432   2      378889999996

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00036  Score=48.85  Aligned_cols=109  Identities=11%  Similarity=-0.084  Sum_probs=52.4

Q ss_pred             eeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhch---------hhhhhh
Q psy15036         42 FNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL---------SLTTGL  104 (179)
Q Consensus        42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~---------~~~~~~  104 (179)
                      |--.|+ +|.++||   +++.+.+..  ...+.++............+ ...+  ||+.|.....         .....+
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC-CceeEeecCCCceecchhhhhhhhhhccccc
Confidence            333465 9999999   665554321  11111111111111222333 3333  7877753321         122223


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036        105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR  162 (179)
Q Consensus       105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r  162 (179)
                      ...+++++++.|.++..  .....+...+.+   ..      .|+++|.||.|+...+
T Consensus        83 ~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~---~~------~~~i~v~~k~d~~~~~  129 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWT--PDDEMVLNKLRE---GK------APVILAVNKVDNVQEK  129 (179)
T ss_dssp             CCCEEEEEEEEETTCCC--HHHHHHHHHHHS---SS------SCEEEEEESTTTCCCH
T ss_pred             hhhcceeEEEEecCccc--hhHHHHHHHhhh---cc------Cceeeeeeeeeccchh
Confidence            34577777777766532  222233333332   22      3566778888876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.98  E-value=0.00018  Score=53.20  Aligned_cols=40  Identities=8%  Similarity=-0.015  Sum_probs=33.3

Q ss_pred             EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC
Q psy15036         79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN  119 (179)
Q Consensus        79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~  119 (179)
                      .+..+ +..+  .||+|++.|......=.+-+|++|+|.|..+
T Consensus        75 ~~~~~-~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          75 RFETK-KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  116 (224)
T ss_dssp             EEECS-SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             EEecC-CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEeccc
Confidence            34445 5566  8999999998888888889999999999986

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.84  E-value=0.00083  Score=48.63  Aligned_cols=64  Identities=6%  Similarity=0.031  Sum_probs=42.1

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .|++|++.|....-.-...+|++|+|.|....-.-...+.-+..+... .-       +++|++-||+|+.+
T Consensus        91 iD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i-------~~iIV~vNK~Dl~~  154 (205)
T d2qn6a3          91 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV-------KNLIIVQNKVDVVS  154 (205)
T ss_dssp             EECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC-------CCEEEEEECGGGSC
T ss_pred             eccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CC-------ceeeeccccCCCcc
Confidence            799999999776666678899999999987631111112222222222 22       47778899999954

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0011  Score=52.11  Aligned_cols=73  Identities=15%  Similarity=-0.062  Sum_probs=52.6

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-CCCCCHH
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-CREVVTP  167 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-~r~Vs~~  167 (179)
                      .||+|+..|..-...-++-+|++++|+|...--.......|......    .      .|++++-||.|... +-..+.+
T Consensus       101 iDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~------~p~i~viNKiDr~~~el~~~~~  170 (341)
T d1n0ua2         101 IDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----R------IKPVVVINKVDRALLELQVSKE  170 (341)
T ss_dssp             ECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----T------CEEEEEEECHHHHHHTSCCCHH
T ss_pred             EcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----C------CCeEEEEECcccccccHHhhHH
Confidence            89999999998888888999999999999876555554555443322    2      46778889999742 3345555


Q ss_pred             HHHH
Q psy15036        168 DQIM  171 (179)
Q Consensus       168 e~~~  171 (179)
                      |+.+
T Consensus       171 ~~~~  174 (341)
T d1n0ua2         171 DLYQ  174 (341)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00036  Score=52.28  Aligned_cols=73  Identities=11%  Similarity=-0.045  Sum_probs=48.5

Q ss_pred             EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHH--------HHHHHHHHHHHHhCCccCcccc
Q psy15036         77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFK--------DVEKWLLQIKVMDGALFTHFEL  146 (179)
Q Consensus        77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~--------~l~~w~~~i~~~~~~~~~~~~~  146 (179)
                      ...+... +.++  .|++|+..|......=...+|++|||.|.+.- -|+        -...| ..++.. +-       
T Consensus        76 ~~~~~~~-~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G-~~e~g~~~~~QT~eh~-~~~~~~-gv-------  144 (239)
T d1f60a3          76 LWKFETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-EFEAGISKDGQTREHA-LLAFTL-GV-------  144 (239)
T ss_dssp             CEEEECS-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHHHTCTTSHHHHHH-HHHHHT-TC-------
T ss_pred             eeEeccC-CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC-ccccccCchHhHHHHH-HHHHHc-CC-------
Confidence            3455666 6677  89999999977666678889999999997642 111        11222 222222 22       


Q ss_pred             ceEEEEeeCCCcCC
Q psy15036        147 QIVFMRGCLELLQR  160 (179)
Q Consensus       147 ~~iilvGnK~Dl~~  160 (179)
                      +++|++-||.|+.+
T Consensus       145 ~~iiv~iNKmD~~~  158 (239)
T d1f60a3         145 RQLIVAVNKMDSVK  158 (239)
T ss_dssp             CEEEEEEECGGGGT
T ss_pred             CeEEEEEECCCCCC
Confidence            46778899999865

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.61  E-value=0.0017  Score=46.44  Aligned_cols=64  Identities=8%  Similarity=0.072  Sum_probs=44.2

Q ss_pred             eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036         89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus        89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .|++|++.|......-...+|++++|.|....-.-....+-+..++... .       ++++++-||.|+.+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~-------~~iiv~inK~D~~d  146 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-Q-------KNIIIAQNKIELVD  146 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-C-------CCEEEEEECGGGSC
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-C-------ccceeeeecccchh
Confidence            8999999998777777789999999999876422222222223333322 2       56778899999865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00049  Score=48.08  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=17.5

Q ss_pred             cCceeeEEE-EeCCCCc---eeEeeec
Q psy15036         39 EFSFNFGTQ-LGRRGIP---LLKHLKY   61 (179)
Q Consensus        39 ~~~~~~Kiv-lG~~gvG---~~~~~~~   61 (179)
                      +.+...||+ +|.++||   +++.+..
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            455689997 9999999   6665553

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.01  E-value=0.0036  Score=46.70  Aligned_cols=68  Identities=6%  Similarity=-0.030  Sum_probs=34.6

Q ss_pred             CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---hhHH---HHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036         85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---NSFK---DVEKWLLQIKVMDGALFTHFELQIVFMRGCLE  156 (179)
Q Consensus        85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---~Sf~---~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~  156 (179)
                      +..+  .|++|+..|......-...+|++++|.|...-   .++.   ....-+..+.... -       +.++++-||.
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~-i-------~~iiv~iNKm  172 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG-I-------NHLVVVINKM  172 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT-C-------SSEEEEEECT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC-C-------CeEEEEEEcC
Confidence            4445  89999999987777778899999999998752   1111   1111122222221 1       3567778999


Q ss_pred             CcCC
Q psy15036        157 LLQR  160 (179)
Q Consensus       157 Dl~~  160 (179)
                      |+..
T Consensus       173 D~~~  176 (245)
T d1r5ba3         173 DEPS  176 (245)
T ss_dssp             TSTT
T ss_pred             CCCc
Confidence            9864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.74  E-value=0.046  Score=40.84  Aligned_cols=47  Identities=11%  Similarity=-0.176  Sum_probs=33.0

Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      ...++.+|+++.|.|..++-|..+  ..++++.   ..+       |+|+|.||+||..
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~---~~K-------p~IlVlNK~DLv~   56 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDIL---KNK-------PRIMLLNKADKAD   56 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC---SSS-------CEEEEEECGGGSC
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH---cCC-------CeEEEEECccCCc
Confidence            456889999999999988876654  2222222   233       6778889999965

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.51  E-value=0.27  Score=35.77  Aligned_cols=48  Identities=15%  Similarity=0.005  Sum_probs=34.9

Q ss_pred             hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        104 LYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       104 ~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      -.-+.|.+++|+++.+|+ +...+.+|+-.+....         .+++||-||+||.+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~---------i~pvIvlnK~DL~~   55 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE---------LETVMVINKMDLYD   55 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT---------CEEEEEECCGGGCC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC---------CCEEEEEeCcccCC
Confidence            346789999999988754 5666788877665432         35566789999954

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.38  E-value=0.44  Score=34.69  Aligned_cols=47  Identities=13%  Similarity=0.055  Sum_probs=34.3

Q ss_pred             hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036        105 YRGTMGFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR  160 (179)
Q Consensus       105 ~~~~~~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~  160 (179)
                      .-+.|.+++|++..++ -++..+.+++-.+....         .+.+||-||+||.+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~---------i~pvIvlnK~DL~~   55 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAND---------IQPIICITKMDLIE   55 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTT---------CEEEEEEECGGGCC
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcC---------CCEEEEEecccccc
Confidence            4578999999998876 45677788876655432         35566789999965