Psyllid ID: psy15214

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MNIYSHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLKK
cccccccccHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccEEEcccEEEEEEEEcccccccccEEEEEEEEEccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEEEEccEEEEEEEEEEcccccEEEEEccEEEEEEEEEEEEEEcc
ccHHHccccEEEEccccccccccccccEEEEEccccHHHHHHHHHHccccccccEEEEEEccccccccccEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEcccEEEEEEEEEccccccccEEEEEEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEEEccc
mniyshslntsriknlyynyntdtkidIRTIlstnstnsnLLSIAntgllfhptflATKIQtagrgragriwysepeiTLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVqlkwpndlllngnkFCGILIDTCIEKKNNNWAIIGIGLnlglprilskkinignISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNfnhaytnktvDILKLNKIQKGIVIGINKNGCLLLNTKfgkitissgdvslrlkk
mniyshslntsRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTkfgkitissgdvslrlkk
MNIYSHSLNTSRIKNLYYNYNTDTKIDIRtilstnstnsnllsiantGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLKK
********NTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITIS**********
***YSHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRL**
MNIYSHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLKK
MNIYSHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MNIYSHSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q9JWI7 592 Bifunctional enzyme BirA/ yes N/A 0.852 0.381 0.326 2e-25
Q5F5C8 592 Bifunctional enzyme BirA/ yes N/A 0.852 0.381 0.317 1e-24
P06709321 Bifunctional protein BirA N/A N/A 0.852 0.704 0.327 2e-24
Q9JXF1 592 Bifunctional enzyme BirA/ yes N/A 0.852 0.381 0.326 3e-23
P37416320 Bifunctional protein BirA yes N/A 0.852 0.706 0.323 1e-22
P46363302 Bifunctional protein BirA yes N/A 0.901 0.791 0.311 6e-20
P0CI75325 Bifunctional protein BirA yes N/A 0.732 0.596 0.276 2e-14
E0U174325 Bifunctional protein BirA yes N/A 0.732 0.596 0.276 2e-14
P29906240 Biotin--[acetyl-CoA-carbo yes N/A 0.830 0.916 0.273 8e-13
Q59014237 Putative biotin ligase OS yes N/A 0.792 0.886 0.306 2e-06
>sp|Q9JWI7|BICOA_NEIMA Bifunctional enzyme BirA/CoaX OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=birA/coaX PE=3 SV=1 Back     alignment and function desciption
 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 7/233 (3%)

Query: 36  STNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKY 94
           S+N  +L +A       H T   T +Q+ GRGR GR W       L FS  W F      
Sbjct: 92  SSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYE 151

Query: 95  LTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIG 154
           L SL  V ++A   AL + G K Q+KWPNDL++  +K  GILI+T +       A++GIG
Sbjct: 152 LGSLSPVAAVACRRALSRLGLKTQIKWPNDLVVGRDKLGGILIET-VRTGGKTVAVVGIG 210

Query: 155 LNLGLPRILSKKINIGNI----SELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYW 210
           +N  LP+ +    ++ ++    S   N +   LL   +  L   L  +   GF+ F+  +
Sbjct: 211 INFVLPKEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEY 270

Query: 211 NFNHAYTNKTVDILKLNK-IQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR 262
              +    K V +L+  + + +G V G++  G L L T  GK T+ SG++SLR
Sbjct: 271 QAANRDHGKAVLLLRDGETVFEGTVKGVDGQGVLHLETAEGKQTVVSGEISLR 323
Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 3
>sp|Q5F5C8|BICOA_NEIG1 Bifunctional enzyme BirA/CoaX OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=birA/coaX PE=3 SV=1 Back     alignment and function description
>sp|P06709|BIRA_ECOLI Bifunctional protein BirA OS=Escherichia coli (strain K12) GN=birA PE=1 SV=1 Back     alignment and function description
>sp|Q9JXF1|BICOA_NEIMB Bifunctional enzyme BirA/CoaX OS=Neisseria meningitidis serogroup B (strain MC58) GN=birA/coaX PE=3 SV=1 Back     alignment and function description
>sp|P37416|BIRA_SALTY Bifunctional protein BirA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=birA PE=3 SV=2 Back     alignment and function description
>sp|P46363|BIRA_HAEIN Bifunctional protein BirA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=birA PE=3 SV=1 Back     alignment and function description
>sp|P0CI75|BIRA_BACSU Bifunctional protein BirA OS=Bacillus subtilis (strain 168) GN=birA PE=1 SV=1 Back     alignment and function description
>sp|E0U174|BIRA_BACPZ Bifunctional protein BirA OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=birA PE=3 SV=1 Back     alignment and function description
>sp|P29906|BIRA_PARDE Biotin--[acetyl-CoA-carboxylase] synthetase OS=Paracoccus denitrificans GN=birA PE=3 SV=1 Back     alignment and function description
>sp|Q59014|BPL_METJA Putative biotin ligase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1619 PE=1 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
UNIPROTKB|P06709321 birA [Escherichia coli K-12 (t 0.758 0.626 0.342 1.8e-23
TIGR_CMR|CPS_4745333 CPS_4745 "birA bifunctional pr 0.762 0.606 0.330 3.8e-23
TIGR_CMR|SO_0214319 SO_0214 "birA bifunctional pro 0.762 0.633 0.330 1e-20
TIGR_CMR|CHY_2371328 CHY_2371 "BirA bifunctional pr 0.766 0.618 0.322 2.1e-20
UNIPROTKB|Q9KV39320 VC_0319 "BirA bifunctional pro 0.784 0.65 0.297 7.2e-20
TIGR_CMR|VC_0319320 VC_0319 "birA bifunctional pro 0.784 0.65 0.297 7.2e-20
TIGR_CMR|CBU_1002323 CBU_1002 "birA bifunctional pr 0.781 0.640 0.309 1.5e-19
TIGR_CMR|DET_0849266 DET_0849 "biotin--acetyl-CoA-c 0.766 0.763 0.308 1.7e-18
UNIPROTKB|Q81ST5326 birA "BirA bifunctional protei 0.784 0.638 0.294 2.2e-18
TIGR_CMR|BA_1560326 BA_1560 "birA bifunctional pro 0.784 0.638 0.294 2.2e-18
UNIPROTKB|P06709 birA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 71/207 (34%), Positives = 108/207 (52%)

Query:    61 QTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG-QKVQL 119
             Q AGRGR GR W+S     L  S+ W+ +        L LVI I ++  L+K G  KV++
Sbjct:   112 QQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRV 171

Query:   120 KWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIG--NISEL-L 176
             KWPNDL L   K  GIL++   +  +    +IG G+N+ + R+    +N G   + E  +
Sbjct:   172 KWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGI 231

Query:   177 NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIG 236
             N++   L A+ I  L  +L+LFE  G + ++  W     + N+ V ++  +K   GI  G
Sbjct:   232 NLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRG 291

Query:   237 INKNGCLLLNTKFGKITI-SSGDVSLR 262
             I+K G LLL    G I     G++SLR
Sbjct:   292 IDKQGALLLEQD-GIIKPWMGGEISLR 317
GO:0009102 "biotin biosynthetic process" evidence=IMP
GO:0003677 "DNA binding" evidence=IEA;IDA
GO:0004077 "biotin-[acetyl-CoA-carboxylase
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
TIGR_CMR|CPS_4745 CPS_4745 "birA bifunctional protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0214 SO_0214 "birA bifunctional protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2371 CHY_2371 "BirA bifunctional protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KV39 VC_0319 "BirA bifunctional protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0319 VC_0319 "birA bifunctional protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1002 CBU_1002 "birA bifunctional protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0849 DET_0849 "biotin--acetyl-CoA-carboxylase ligase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q81ST5 birA "BirA bifunctional protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1560 BA_1560 "birA bifunctional protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P37416BIRA_SALTY6, ., 3, ., 4, ., 1, 50.32320.85280.7062yesN/A
P29906BIRA_PARDE6, ., 3, ., 4, ., 1, 50.27310.83010.9166yesN/A
Q59014BPL_METJA6, ., 3, ., 4, ., 1, 50.30630.79240.8860yesN/A
P46363BIRA_HAEIN6, ., 3, ., 4, ., 1, 50.31170.90180.7913yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.40.691
3rd Layer2.3.1LOW CONFIDENCE prediction!
3rd Layer6.3.4.150.737
3rd Layer2.3.1.181LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
COG0340238 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) lig 6e-50
PRK06955300 PRK06955, PRK06955, biotin--protein ligase; Provis 2e-48
PRK11886319 PRK11886, PRK11886, bifunctional biotin--[acetyl-C 1e-43
TIGR00121237 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-c 2e-39
PRK13325 592 PRK13325, PRK13325, bifunctional biotin--[acetyl-C 2e-27
PRK08330236 PRK08330, PRK08330, biotin--protein ligase; Provis 3e-21
PRK05935190 PRK05935, PRK05935, biotin--protein ligase; Provis 2e-12
PRK08477211 PRK08477, PRK08477, biotin--protein ligase; Provis 3e-12
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 8e-12
PTZ00276245 PTZ00276, PTZ00276, biotin/lipoate protein ligase; 3e-11
pfam0223747 pfam02237, BPL_C, Biotin protein ligase C terminal 4e-05
PTZ00275285 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase 8e-05
>gnl|CDD|223417 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information 
 Score =  164 bits (416), Expect = 6e-50
 Identities = 82/235 (34%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 33  STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
             +STN+     A +G       +A + QTAGRGR GR W S     L  SL  +  +  
Sbjct: 3   EIDSTNTEAKERAASGAPEGTVVVA-EEQTAGRGRRGRKWSSPKGGGLYMSLLLRPDLPP 61

Query: 93  KYLTSLPLVISIALSIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIG 152
             L SL LV  +A++ AL+KFG  V++KWPND+LLNG K  GIL++   ++      ++G
Sbjct: 62  AELPSLSLVAGLAVAEALRKFGIDVRIKWPNDVLLNGKKLAGILVEAVGDENGLLAVVVG 121

Query: 153 IGLNLGLPRILSKKIN---IGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKY 209
           IG+N+  P    + I         E   ++ E+LLA  +  L   L+ F   GF+  +  
Sbjct: 122 IGINVNNPPPDFEDIGQPATSLQEEGEEIDREELLAKLLKELEKYLRQFLREGFAPILAR 181

Query: 210 WNFNHAYTNKTVDILKLNKIQKG-IVIGINKNGCLLLNTKFGKI-TISSGDVSLR 262
           W        K V +     +  G I  GI+++G LLL T  G++ TI SG+VSLR
Sbjct: 182 WRARSLSLGKEVRLTLGGGVIFGGIAKGIDEDGALLLETDDGEVQTIYSGEVSLR 236

Length = 238
>gnl|CDD|235896 PRK06955, PRK06955, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|237010 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>gnl|CDD|232834 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>gnl|CDD|183976 PRK13325, PRK13325, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>gnl|CDD|169384 PRK08330, PRK08330, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|235649 PRK05935, PRK05935, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|236273 PRK08477, PRK08477, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information
>gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|216943 pfam02237, BPL_C, Biotin protein ligase C terminal domain Back     alignment and domain information
>gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 100.0
PRK06955300 biotin--protein ligase; Provisional 100.0
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 100.0
PRK08330236 biotin--protein ligase; Provisional 100.0
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 100.0
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 100.0
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 100.0
PTZ00276245 biotin/lipoate protein ligase; Provisional 100.0
PRK08477211 biotin--protein ligase; Provisional 100.0
PRK05935190 biotin--protein ligase; Provisional 100.0
KOG1536|consensus649 100.0
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.89
PF0223748 BPL_C: Biotin protein ligase C terminal domain; In 99.13
PRK14348221 lipoate-protein ligase B; Provisional 96.94
PRK14342213 lipoate-protein ligase B; Provisional 96.47
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 96.32
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 96.32
PRK14344223 lipoate-protein ligase B; Provisional 96.16
PRK14345234 lipoate-protein ligase B; Provisional 95.53
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 95.39
PRK14343235 lipoate-protein ligase B; Provisional 95.22
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 95.01
PRK14349220 lipoate-protein ligase B; Provisional 94.9
PRK14341213 lipoate-protein ligase B; Provisional 94.14
PF04017183 DUF366: Domain of unknown function (DUF366); Inter 93.93
PRK03822338 lplA lipoate-protein ligase A; Provisional 93.23
COG2029189 Uncharacterized conserved protein [Function unknow 92.26
PF0142367 LSM: LSM domain ; InterPro: IPR001163 This family 91.93
PRK14347209 lipoate-protein ligase B; Provisional 91.35
PRK14061562 unknown domain/lipoate-protein ligase A fusion pro 91.27
PRK14346230 lipoate-protein ligase B; Provisional 91.2
PF1456342 DUF4444: Domain of unknown function (DUF4444); PDB 90.61
PF1084266 DUF2642: Protein of unknown function (DUF2642); In 86.28
cd0172667 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins 84.28
cd0173168 archaeal_Sm1 The archaeal sm1 proteins: The Sm pro 84.25
smart0065167 Sm snRNP Sm proteins. small nuclear ribonucleoprot 84.17
cd0060063 Sm_like The eukaryotic Sm and Sm-like (LSm) protei 83.62
PRK0073772 small nuclear ribonucleoprotein; Provisional 82.78
cd0616875 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins 81.25
cd0172268 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins 80.85
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information 
Probab=100.00  E-value=1.2e-62  Score=433.06  Aligned_cols=231  Identities=32%  Similarity=0.494  Sum_probs=211.0

Q ss_pred             EEEEcccccHHHHHHHHhhcCC-CCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEeeecCcCccccCchHHHHHHHH
Q psy15214         28 IRTILSTNSTNSNLLSIANTGL-LFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIAL  106 (265)
Q Consensus        28 i~~~~~v~STn~~a~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~alav  106 (265)
                      ++++++++|||++|+  +++.+ .+++++|+|++||+||||+||+|+||+| +||||++++++.++...+.+++++|+|+
T Consensus         2 i~~~~~~~STn~~~~--~~~~~~~~~~~vv~A~~QTaGRGR~gr~W~Sp~g-~l~~S~~l~~~~~~~~~~~ls~~~~lAv   78 (237)
T TIGR00121         2 VIVLDVIDSTNQYAL--ELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEG-GLYFSLILRPDLPKSPAPGLTLVAGIAI   78 (237)
T ss_pred             EEEEeecCCHHHHHH--HHHhcCCCCCeEEEEcccCCCCCCCCCcccCCCC-ceEEEEEECCCCChhHhhhhHHHHHHHH
Confidence            678999999999999  87765 4589999999999999999999999999 8999999998877778889999999999


Q ss_pred             HHHHHHcCCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCCCCcc--ccccccccC--CCHHH
Q psy15214        107 SIALKKFGQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKIN--IGNISELLN--MEHEK  182 (265)
Q Consensus       107 ~~aL~~~~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~~~~~--atsL~~~~g--~~~~~  182 (265)
                      +++|++++.+++||||||||+++||+||||+|.....+...++||||||||++++. ++.+.  ++||.++.+  +++++
T Consensus        79 ~~al~~~~~~~~iKWPNDI~~~~kKi~GIL~E~~~~~~~~~~vviGIGiNv~~~~~-~~~~~~~a~sl~~~~~~~~~~~~  157 (237)
T TIGR00121        79 AEVLKELGDQVQVKWPNDILLKDKKLGGILTELTGKENRADYVVIGIGINVQNRKP-AESLREQAISLSEEAGIDLDRGE  157 (237)
T ss_pred             HHHHHHhCCCCCCcCCceEEECCeEEEEEEEEcccCCCCcCEEEEEEEEccCCCCC-chhhcccceehHHhhCCCCCHHH
Confidence            99999998899999999999999999999999887666667899999999997543 33333  899988766  99999


Q ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECCCceEEEEeCCceEEEEeeeEEEe
Q psy15214        183 LLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLR  262 (265)
Q Consensus       183 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~~G~L~l~~~~g~~~~~~Gev~l~  262 (265)
                      |++.++++|+.++..|.+++|+.++++|++++.++|++|++..+++.++|++.|||++|+|+|+++++.++|++|||++|
T Consensus       158 ll~~l~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~G~~~gI~~~G~L~v~~~~~~~~~~sGev~~~  237 (237)
T TIGR00121       158 LIEGFLRNFEENLEWFEQEGIDEILSKWEKLSAHIGREVSLTTGNGEIEGIARGIDKDGALLLEDGGGIKKIISGEISLR  237 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhhccCCeEEEEeCCcEEEEEEEeECCCceEEEEeCCeEEEEEEEEEEEC
Confidence            99999999999999999999999999999999999999999988888999999999999999997777889999999985

The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>KOG1536|consensus Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function Back     alignment and domain information
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information
>COG2029 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A Back     alignment and domain information
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function Back     alignment and domain information
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences Back     alignment and domain information
>smart00651 Sm snRNP Sm proteins Back     alignment and domain information
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PRK00737 small nuclear ribonucleoprotein; Provisional Back     alignment and domain information
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1hxd_A321 Crystal Structure Of E. Coli Biotin Repressor With 8e-25
3rir_A323 Crystal Strucrture Of Biotin Protein Ligase From S. 1e-10
3v7r_A329 Crystal Structure Of Staphylococcus Aureus Biotin P 2e-10
3v7c_A329 Cystal Structure Of Sabpl In Complex With Inhibitor 2e-10
4dq2_A328 Structure Of Staphylococcus Aureus Biotin Protein L 2e-10
1wnl_A235 Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase 1e-09
1wpy_A235 Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase 2e-09
2djz_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 4e-09
2deq_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 5e-09
2dxu_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 8e-09
2dve_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 8e-09
2dxt_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 1e-08
2e41_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 3e-08
3l1a_A266 Structural Ordering Of Disordered Ligand Binding Lo 2e-07
3rux_A270 Crystal Structure Of Biotin-Protein Ligase Bira Fro 2e-07
2cgh_A268 Crystal Structure Of Biotin Ligase From Mycobacteri 2e-07
2ej9_A237 Crystal Structure Of Biotin Protein Ligase From Met 3e-07
2eay_A233 Crystal Structure Of Biotin Protein Ligase From Aqu 3e-06
3efs_A233 Biotin Protein Ligase From Aquifex Aeolicus In Comp 4e-06
3efr_A233 Biotin Protein Ligase R40g Mutant From Aquifex Aeol 5e-05
>pdb|1HXD|A Chain A, Crystal Structure Of E. Coli Biotin Repressor With Bound Biotin Length = 321 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 4/206 (1%)
Query: 61  QTAGRGRAGRIWYSEPEITLTFSLAWKFKISLKYLTSLPLVISIALSIALKKFG-QKVQL 119
           Q AGRGR GR W+S     L  S+ W+ +        L LVI I ++  L+K G  KV++
Sbjct: 112 QQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRV 171
Query: 120 KWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILSKKINIGNIS---ELL 176
           KWPNDL L   K  GIL++   +  +    +IG G+N+ + R+    +N G I+     +
Sbjct: 172 KWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGI 231
Query: 177 NMEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIG 236
           N++   L A+ I  L  +L+LFE  G + ++  W     + N+ V ++  +K   GI  G
Sbjct: 232 NLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRG 291
Query: 237 INKNGCLLLNTKFGKITISSGDVSLR 262
           I+K G LLL           G++SLR
Sbjct: 292 IDKQGALLLEQDGIIKPWMGGEISLR 317
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus Length = 323 Back     alignment and structure
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein Ligase In Complex With Inhibitor Length = 329 Back     alignment and structure
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor Length = 329 Back     alignment and structure
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase In Complex With Biotinol-5'-Amp Length = 328 Back     alignment and structure
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase) Ligase From Pyrococcus Horikoshii Ot3 In Complex With Adp Length = 235 Back     alignment and structure
>pdb|1WPY|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase) Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotin Length = 235 Back     alignment and structure
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a Mutation Length = 235 Back     alignment and structure
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g Mutation Length = 235 Back     alignment and structure
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a Length = 235 Back     alignment and structure
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation Arg51ala Length = 235 Back     alignment and structure
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With Atp And Biotin, Mutation D104a Length = 235 Back     alignment and structure
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With The Reaction Product Analog Biotinol-5'-Amp, Mutations R48a And K111a Length = 235 Back     alignment and structure
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of Biotin Protein Ligase Into Active Conformations As A Consequence Of Dehydration Length = 266 Back     alignment and structure
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From Mycobacterium Tuberculosis In Complex With An Acylsulfamide Bisubstrate Inhibitor Length = 270 Back     alignment and structure
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium Tuberculosis Length = 268 Back     alignment and structure
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Methanococcus Jannaschii Length = 237 Back     alignment and structure
>pdb|2EAY|A Chain A, Crystal Structure Of Biotin Protein Ligase From Aquifex Aeolicus Length = 233 Back     alignment and structure
>pdb|3EFS|A Chain A, Biotin Protein Ligase From Aquifex Aeolicus In Complex With Biotin And Atp Length = 233 Back     alignment and structure
>pdb|3EFR|A Chain A, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In Complex With Biotin Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1bia_A321 BIRA bifunctional protein; transcription regulatio 4e-64
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 1e-59
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 1e-55
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 8e-54
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 8e-53
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 4e-47
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 8e-38
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Length = 321 Back     alignment and structure
 Score =  202 bits (515), Expect = 4e-64
 Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 33  STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
             +STN  LL                + Q AGRGR GR W+S     L  S+ W+ +   
Sbjct: 86  VIDSTNQYLLDRIGELK--SGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGP 143

Query: 93  KYLTSLPLVISIALSIALKKFG-QKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAII 151
                L LVI I ++  L+K G  KV++KWPNDL L   K  GIL++   +  +    +I
Sbjct: 144 AAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVI 203

Query: 152 GIGLNLGLPRILSKKINIGNISELLNMEHE----KLLAVFICYLIDSLKLFEHYGFSIFM 207
           G G+N+ + R+    +N G    L           L A+ I  L  +L+LFE  G + ++
Sbjct: 204 GAGINMAMRRVEESVVNQG-WITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYL 262

Query: 208 KYWNFNHAYTNKTVDILKLNKIQKGIVIGINKNGCLLLNTKFGKITISSGDVSLRLKK 265
             W     + N+ V ++  +K   GI  GI+K G LLL           G++SLR  +
Sbjct: 263 SRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAE 320
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 4dq2_A* Length = 323 Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Length = 233 Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Length = 270 Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Length = 235 Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Length = 237 Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 100.0
1bia_A321 BIRA bifunctional protein; transcription regulatio 100.0
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 100.0
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 100.0
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 100.0
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 100.0
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 98.75
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 98.06
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 97.73
1vqz_A341 Lipoate-protein ligase, putative; class II AARS an 97.67
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 97.58
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 97.46
3a7r_A337 Lipoate-protein ligase A; adenylate-forming enzyme 97.32
2e5a_A347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 96.58
2ddz_A190 190AA long hypothetical protein; hexamer, structur 95.62
1h64_175 SnRNP SM-like protein; SM fold, spliceosome, snRNP 87.33
1d3b_B91 Protein (small nuclear ribonucleoprotein associat 85.21
4emk_B75 U6 snRNA-associated SM-like protein LSM6; SM fold, 84.53
1y96_A86 Gemin6, SIP2, GEM-associated protein 6; SM fold, p 83.96
1i4k_A77 Putative snRNP SM-like protein; core snRNP domain, 83.73
1mgq_A83 SM-like protein; LSM, RNA-binding, archea, RNA bin 82.98
1th7_A81 SnRNP-2, small nuclear riboprotein protein; archae 82.43
1ljo_A77 Archaeal SM-like protein AF-SM2; snRNP, core snRNP 81.8
4emk_A94 U6 snRNA-associated SM-like protein LSM5; SM fold, 81.53
1d3b_A75 Protein (small nuclear ribonucleoprotein SM D3); s 80.86
4emh_A105 Probable U6 snRNA-associated SM-like protein LSM4; 80.68
3pgw_B 231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 80.54
1i8f_A81 Putative snRNP SM-like protein; beta barrel-like S 80.39
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-65  Score=465.66  Aligned_cols=252  Identities=21%  Similarity=0.294  Sum_probs=216.2

Q ss_pred             CCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEe
Q psy15214          6 HSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLA   85 (265)
Q Consensus         6 ~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~   85 (265)
                      +.|+++.|...|.+..  -+.+++++++++|||++|+  ......+++++|+|++||+||||+||+|+||+|+|||||++
T Consensus        65 ~~l~~~~i~~~l~~~~--~g~~i~~~~~~~STn~~a~--~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~  140 (323)
T 3rkx_A           65 DIWYQGIIDQYTKSSA--LFDFSEVYDSIDSTQLAAK--KSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVV  140 (323)
T ss_dssp             SSCCHHHHHHHHHTCS--SCSEEEEEEEESCHHHHHH--HHTTTCCCCEEEEEEEEC------------CTTCEEEEEEE
T ss_pred             ccCCHHHHHhhccccc--CCceEEEEcCCCCHHHHHH--HHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEE
Confidence            6799999999884422  3456999999999999994  33333789999999999999999999999999999999999


Q ss_pred             eecCcCccccCchHHHHHHHHHHHHHHc-CCccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCC-C
Q psy15214         86 WKFKISLKYLTSLPLVISIALSIALKKF-GQKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRI-L  163 (265)
Q Consensus        86 ~~~~~~~~~~~~l~l~~alav~~aL~~~-~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~-~  163 (265)
                      ++|+.++..++.+++++|+||++||+++ +.+++||||||||++|||+||||+|...+.+...++||||||||++++. +
T Consensus       141 l~p~~~~~~~~~lsl~~avAv~~al~~~~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~~~~~  220 (323)
T 3rkx_A          141 LRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENF  220 (323)
T ss_dssp             ECCCCCTTSGGGHHHHHHHHHHHHHHTTCSSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCCGGGS
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHHHhcCCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCCcccC
Confidence            9998888889999999999999999998 6799999999999999999999999988877778999999999998643 3


Q ss_pred             CCCcc--ccccccccC--CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcccCCCEEEEEECCeEEEEEEEeECC
Q psy15214        164 SKKIN--IGNISELLN--MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNHAYTNKTVDILKLNKIQKGIVIGINK  239 (265)
Q Consensus       164 ~~~~~--atsL~~~~g--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gI~~  239 (265)
                      +++++  ||||..+.+  ++|++|++.++++|+.+|..|.+.+|..++++|++++.++|++|++..+++.++|++.|||+
T Consensus       221 p~~l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~~~G~~~gId~  300 (323)
T 3rkx_A          221 DESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQFKGQAIDLDY  300 (323)
T ss_dssp             CTTTGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CEEEEEEEEECT
T ss_pred             CcccCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeEEEEEEEEECC
Confidence            34554  999998876  99999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CceEEEEeCCc-eEEEEeeeEEE
Q psy15214        240 NGCLLLNTKFG-KITISSGDVSL  261 (265)
Q Consensus       240 ~G~L~l~~~~g-~~~~~~Gev~l  261 (265)
                      +|+|+|++++| +++|++||||+
T Consensus       301 ~G~Llv~~~~G~~~~~~sGevsl  323 (323)
T 3rkx_A          301 DGYLIVRDEAGESHRLISADIDF  323 (323)
T ss_dssp             TSCEEEEETTSCEEEESSCEEEC
T ss_pred             CCEEEEEECCCCEEEEEEeeEEC
Confidence            99999999999 79999999985
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4 Back     alignment and structure
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A* Back     alignment and structure
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A Back     alignment and structure
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B Back     alignment and structure
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens} Back     alignment and structure
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A* Back     alignment and structure
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A Back     alignment and structure
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1 Back     alignment and structure
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1 Back     alignment and structure
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A Back     alignment and structure
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 Back     alignment and structure
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Back     alignment and structure
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1biaa3207 d.104.1.2 (A:64-270) Biotin repressor/biotin holoe 6e-15
d2zgwa2188 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylas 1e-12
d1biaa247 b.34.1.1 (A:271-317) Biotin repressor/biotin holoe 2e-09
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.6 bits (169), Expect = 6e-15
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 33  STNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLAWKFKISL 92
             +STN  LL                + Q AGRGR GR W+S     L  S+ W+ +   
Sbjct: 23  VIDSTNQYLLDRIGEL--KSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGP 80

Query: 93  KYLTSLPLVISIALSIALKKFGQ-KVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAII 151
                L LVI I ++  L+K G  KV++KWPNDL L   K  GIL++   +  +    +I
Sbjct: 81  AAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVI 140

Query: 152 GIGLNLGLPRI---LSKKINIGNISELLNMEHEKLLAVFICYLIDSLKLFEHYGFSIFMK 208
           G G+N+ + R+   +  +  I      +N++   L A+ I  L  +L+LFE  G + ++ 
Sbjct: 141 GAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLS 200

Query: 209 YWN 211
            W 
Sbjct: 201 RWE 203
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188 Back     information, alignment and structure
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 100.0
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 100.0
d1biaa247 Biotin repressor/biotin holoenzyme synthetase, C-t 99.29
d2zgwa147 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal 98.15
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 97.78
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 97.62
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 97.21
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 97.04
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 97.02
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 96.95
d2ddza1188 Uncharacterized protein PH0223 {Pyrococcus horikos 95.61
d1h641_71 Archaeal homoheptameric Sm protein {Archaeon Pyroc 90.2
d1mgqa_74 Archaeal homoheptameric Sm protein {Archaeon Metha 89.01
d1i4k1_72 Archaeal homoheptameric Sm protein {Archaeon Archa 88.04
d1i8fa_71 Archaeal homoheptameric Sm protein {Archaeon Pyrob 86.98
d1th7a176 Archaeal homoheptameric Sm protein {Sulfolobus sol 86.98
d1d3bb_81 B core SNRNP protein {Human (Homo sapiens) [TaxId: 85.66
d1ljoa_75 Archaeal homoheptameric Sm protein {Archaeon Archa 85.23
d1d3ba_72 D3 core SNRNP protein {Human (Homo sapiens) [TaxId 82.15
d1b34a_80 D1 core SNRNP protein {Human (Homo sapiens) [TaxId 81.97
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-54  Score=371.77  Aligned_cols=201  Identities=30%  Similarity=0.481  Sum_probs=161.4

Q ss_pred             CCCCHHHHHhhhccCCCCCceeEEEEcccccHHHHHHHHhhcCCCCCCeEEEeCcccCCCCCCCCeeeeCCCCceEEEEe
Q psy15214          6 HSLNTSRIKNLYYNYNTDTKIDIRTILSTNSTNSNLLSIANTGLLFHPTFLATKIQTAGRGRAGRIWYSEPEITLTFSLA   85 (265)
Q Consensus         6 ~~l~~~~i~~~~~~~~~~~~~~i~~~~~v~STn~~a~~~~~~~~~~~~~vv~A~~QT~GrGR~gr~W~Sp~g~~L~~S~~   85 (265)
                      +.||++.|..++      ...++.++|+|+|||++|+  +++.+.+++++|+|++||+||||+||+|.||+|++||||++
T Consensus         2 ~~l~~~~i~~~l------~~~~i~~~~~i~STn~~~~--~~~~~~~~~~vv~A~~QT~GrGR~gr~W~S~~G~~l~~S~~   73 (207)
T d1biaa3           2 QLLNAKQILGQL------DGGSVAVLPVIDSTNQYLL--DRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMF   73 (207)
T ss_dssp             CCCCHHHHHHTC------CSSCEEECSSBSCHHHHHH--TTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEE
T ss_pred             CcCCHHHHHhhC------CCCcEEEEeccCcHHHHHH--HhhhcCCCCcEEEECccccCCCcCCCccccccccccccccc
Confidence            469999999888      4557999999999999999  88777889999999999999999999999999988999999


Q ss_pred             eecCcCccccCchHHHHHHHHHHHHHHcC-CccceeeCCcEEEcCeeEEEEEEEeeecCCCccEEEEEeccccCCCCCCC
Q psy15214         86 WKFKISLKYLTSLPLVISIALSIALKKFG-QKVQLKWPNDLLLNGNKFCGILIDTCIEKKNNNWAIIGIGLNLGLPRILS  164 (265)
Q Consensus        86 ~~~~~~~~~~~~l~l~~alav~~aL~~~~-~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGIGiNv~~~~~~~  164 (265)
                      ++++.++...+.+++++|+|++++|+++. .+++||||||||++|||+||||+|.....+...++|||||||+++++...
T Consensus        74 ~~~~~~~~~~~~l~~~~~lav~~~l~~~~~~~~~iKWPNDIl~~~kKi~GIL~E~~~~~~~~~~vviGiGiNv~~~~~~~  153 (207)
T d1biaa3          74 WRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEE  153 (207)
T ss_dssp             EEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC-----
T ss_pred             cccccCchhhhhhhhHHHHHHHHHHhhcccceeeeeechhhhcCCCccccceEEEEeccCCcceeeeecccccccCCCcc
Confidence            99988777788899999999999999985 59999999999999999999999988776666789999999999865432


Q ss_pred             CCcc-ccccccccC--CCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhc
Q psy15214        165 KKIN-IGNISELLN--MEHEKLLAVFICYLIDSLKLFEHYGFSIFMKYWNFNH  214 (265)
Q Consensus       165 ~~~~-atsL~~~~g--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  214 (265)
                      +..+ ++++..+.+  ++++++++.++++|..++..|.+++|+.++++|++++
T Consensus       154 ~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l~~~l~~~~~~gf~~~~~~w~~~D  206 (207)
T d1biaa3         154 SVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLD  206 (207)
T ss_dssp             ------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHB
T ss_pred             ccccchhHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence            2122 444444455  9999999999999999999999999999999999876
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]} Back     information, alignment and structure
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]} Back     information, alignment and structure
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure